The impacts of COVID-19 lockdown on wildlife in Deccan Plateau, India

Integrating human mobility and animal movement data reveals complex space-use between humans and white-tailed deer in urban environments

Human expansion into wildlife habitats has increased the need to understand human-wildlife interactions, necessitating interdisciplinary approaches to assess zoonotic disease transmission risks and public health impacts. This study integrated fine-grained human foot traffic data with hourly GPS data from 38 white-tailed deer (Odocoileus virginianus), a species linked to SARS-CoV-2, brucella, and chronic wasting disease, in Howard County, Maryland. We explored spatial and temporal overlap between human and deer activity over 24 months (2018-2019) across a hexagonal tessellation with metrics like hourly popularity and visit counts. Negative binomial models were fitted to the visit counts of each deer and humans per tessellation area, using landscape features as predictors. A separate deer-only model included commercial human activity as another predictor. Spatial analysis showed deer and humans sharing spaces in the study area, with results indicating deer using more populated residential areas and areas with commercial activity. Temporal analysis showed deer avoiding commercial spaces during daytime but using them in late evening and early morning. These findings highlight the complex space use between species and the importance of integrating detailed human mobility and animal movement data when managing wildlife-human conflict and zoonotic disease transmission, particularly in urban areas with a high probability of deer-human interactions.

Impacts of the COVID-19 Pandemic on Wildlife in Huangshan Scenic Area, Anhui Province, China

Human activities impact ecosystems globally, and understanding human-wildlife coexistence is crucial for species conservation. This study analyzed trends in local wildlife populations before and during the COVID-19 pandemic to assess their response to human disturbance. From 2017 to 2022, 60 camera sites were monitored, and seven species with the largest population size-excluding rodents-were selected for analysis. The results revealed that the presence of humans (p = 0.025) and domesticated animals (cats and dogs, p = 0.002) significantly decreased during the pandemic. Conversely, five species (except the Tibetan macaque and mainland serow) showed habitat expansion and population growth (p < 0.05), which may be related to their avoidance of human presence or artificial structures such as roads and tourism facilities. In addition, the analysis showed that most species, except the Tibetan macaque and wild boar, adjusted their activity patterns, showing increased diurnal activity when human disturbances were reduced (RR > 0). These findings suggest that species may adapt their behaviors to avoid human presence. This study highlights the negative impacts of human activities on local wildlife and emphasizes the need for stronger conservation and management efforts to mitigate human disturbances in scenic areas.

Evaluation of Risk Factors Influencing Tick-Borne Infections in Livestock Through Molecular Analyses

Climate changes and human-related activities are identified as major factors responsible for the increasing distribution and abundance of vectors worldwide and, consequently, of vector-borne diseases (VBDs). Farmed animals, during grazing or in establishments with the absence of biosecurity measures, can easily be exposed to wildlife showing high-risk of contagion of several infectious diseases, including VBDs. Furthermore, livestock represents an interface between wildlife and humans, and thus, promoting the transmission pathway of VBDs. Little is known about the presence and prevalence of VBDs in livestock in Southern Italy; therefore, the present study evaluated the circulation of zoonotic VBDs in livestock and potential risk of exposure. A total of 621 whole blood samples belonging to cattle and buffaloes (n = 345) and small ruminants (n = 276) were examined by molecular examinations for the detection of tick-borne pathogens (TBPs). High prevalence (66.3%) for at least one agent was observed. Moreover, the risk of exposure related to environmental features was assessed, as follows: presence of humid areas, high-density of animals, and sample collection during May. These results show a high circulation of TBPs among livestock and underline the need for surveillance in high-risk habitats for public health.

Species and habitat specific changes in bird activity in an urban environment during Covid 19 lockdown

Covid-19 lockdowns provided ecologists with a rare opportunity to examine how animals behave when humans are absent. Indeed many studies reported various effects of lockdowns on animal activity, especially in urban areas and other human-dominated habitats. We explored how Covid-19 lockdowns in Israel have influenced bird activity in an urban environment by using continuous acoustic recordings to monitor three common bird species that differ in their level of adaptation to the urban ecosystem: (1) the hooded crow, an urban exploiter, which depends heavily on anthropogenic resources; (2) the rose-ringed parakeet, an invasive alien species that has adapted to exploit human resources; and (3) the graceful prinia, an urban adapter, which is relatively shy of humans and can be found in urban habitats with shrubs and prairies. Acoustic recordings provided continuous monitoring of bird activity without an effect of the observer on the animal. We performed dense sampling of a 1.3 square km area in northern Tel-Aviv by placing 17 recorders for more than a month in different micro-habitats within this region including roads, residential areas and urban parks. We monitored both lockdown and no-lockdown periods. We portray a complex dynamic system where the activity of specific bird species depended on many environmental parameters and decreases or increases in a habitat-dependent manner during lockdown. Specifically, urban exploiter species decreased their activity in most urban habitats during lockdown, while human adapter species increased their activity during lockdown especially in parks where humans were absent. Our results also demonstrate the value of different habitats within urban environments for animal activity, specifically highlighting the importance of urban parks. These species- and habitat-specific changes in activity might explain the contradicting results reported by others who have not performed a habitat specific analysis.

3D solid of SARS-CoV-2 viral particles applying Legendre polynomials from tomography Fourier analysis

We show the construction of 3D solids (volumetric 3D models) of SARS-CoV-2 viral particles from the tomographic studies (videos) of SARS-CoV-2-infected tissues. To this aim, we propose a video analysis (tomographic images) by frames (medical images of the virus), which we set as our metadata. We optimize the frames by means of Fourier analysis, which induces a periodicity with simple structure patterns to minimize noise filtering and to obtain an optimal phase of the objects in the image, focusing on the SARS-CoV-2 cells to obtain a medical image under study phase (MIS) (process repeated over all frames). We build a Python algorithm based on Legendre polynomials called "2DLegendre_Fit," which generates (using multilinear interpolation) intermediate images between neighboring MIS phases. We used this code to generate m images of size M×M, resulting in a matrix with size M×M×M (3D solid). Finally, we show the 3D solid of the SARS-CoV-2 viral particle as part of our results in several videos, subsequently rotated and filtered to identify the glicoprotein spike protein, membrane protein, envelope, and the hemagglutinin esterase. We show the algorithms in our proposal along with the main MATLAB functions such as FourierM and Results as well as the data required for the program execution in order to reproduce our results.

Worse sleep and increased energy expenditure yet no movement changes in sub-urban wild boar experiencing an influx of human visitors (anthropulse) during the COVID-19 pandemic

Expansion of urban areas, landscape transformation and increasing human outdoor activities strongly affect wildlife behaviour. The outbreak of the COVID-19 pandemic in particular led to drastic changes in human behaviour, exposing wildlife around the world to either reduced or increased human presence, potentially altering animal behaviour. Here, we investigate behavioural responses of wild boar (Sus scrofa) to changing numbers of human visitors to a suburban forest near Prague, Czech Republic, during the first 2.5 years of the COVID-19 epidemic (April 2019-November 2021). We used bio-logging and movement data of 63 GPS-collared wild boar and human visitation data based on an automatic counter installed in the field. We hypothesised that higher levels of human leisure activity will have a disturbing effect on wild boar behaviour manifested in increased movements and ranging, energy spent, and disrupted sleep patterns. Interestingly, whilst the number of people visiting the forest varied by two orders of magnitude (from 36 to 3431 people weekly), even high levels of human presence (>2000 visitors per week) did not affect weekly distance travelled, home range size, and maximum displacement of wild boar. Instead, individuals spent 41 % more energy at high levels of human presence (>2000 visitors per week), with more erratic sleep patterns, characterised by shorter and more frequent sleeping bouts. Our results highlight multifaceted effects of increased human activities ('anthropulses'), such as those related to COVID-19 countermeasures, on animal behaviour. High human pressure may not affect animal movements or habitat use, especially in highly adaptable species such as wild boar, but may disrupt animal activity rhythms, with potentially detrimental fitness consequences. Such subtle behavioural responses can be overlooked if using only standard tracking technology.

Partial COVID-19 closure of a national park reveals negative influence of low-impact recreation on wildlife spatiotemporal ecology

Human presence exerts complex effects on the ecology of species, which has implications for biodiversity persistence in protected areas experiencing increasing human recreation levels. However, the difficulty of separating the effect on species of human presence from other environmental or disturbance gradients remains a challenge. The cessation of human activity that occurred with COVID-19 restrictions provides a 'natural experiment' to better understand the influence of human presence on wildlife. Here, we use a COVID-19 closure within a heavily visited and highly protected national park (Glacier National Park, MT, USA) to examine how 'low-impact' recreational hiking affects the spatiotemporal ecology of a diverse mammal community. Based on data collected from camera traps when the park was closed and then subsequently open to recreation, we found consistent negative responses to human recreation across most of our assemblage of 24 species, with fewer detections, reduced site use, and decreased daytime activity. Our results suggest that the dual mandates of national parks and protected areas to conserve biodiversity and promote recreation have potential to be in conflict, even for presumably innocuous recreational activities. There is an urgent need to understand the fitness consequences of these spatiotemporal changes to inform management decisions in protected areas.

COVID-19 lockdown has indirect, non-equivalent effects on activity patterns of Reeves's Pheasant (Syrmaticus reevesii) and sympatric species

The outbreak of the COVID-19 pandemic has brought massive shifts in human activities through a global blockade, directly affecting wildlife survival. However, the indirect impacts of changes in human activities are often easily overlooked. We conducted surveys of Reeves's Pheasant (Syrmaticus reevesii) and its sympatric species by camera traps in forest-type nature reserves in three different scenarios: pre-lockdown, lockdown and post-lockdown. An increase in livestock activities observed during the lockdown and post-lockdown period in our study area provided us an opportunity to investigate the indirect impact of the lockdown on wildlife. The pre-lockdown period was used as a baseline to compare any changes in trends of relative abundance index, activity patterns and temporal spacing of targeted species and livestock. During the lockdown period, the relative abundance index of livestock increased by 50% and there was an increase in daytime activity. Reeves's Pheasant showed avoidance responses to almost all sympatric species and livestock in three different periods, and the livestock avoidance level of Reeves's Pheasant during the lockdown period was significantly and positively correlated with the relative abundance index of livestock. Species-specific changes in activity patterns of study species were observed, with reduced daytime activities of Hog Badger and Raccoon Dog during and after the confinement periods. This study highlights the effect of the COVID-19 lockdown on the responses of wildlife by considering the changes in their temporal and spatial use before, during and after lockdown. The knowledge gained on wildlife during reduced human mobility because of the pandemic aids in understanding the effect of human disturbances and developing future conservation strategies in the shared space, to manage both wildlife and livestock.

Wildlife in climate refugia: Mammalian diversity, occupancy, and tiger distribution in the Western Himalayas, Nepal

Anthropogenic land-use change continues to be predicated as a major driver of terrestrial biodiversity loss for the rest of this century. It has been determined that the effect of climate change on wildlife population will accelerate the rate and process of decline of global vertebrate populations. We investigated wildlife composition, occupancy, and activity pattern along the larger climate resilient forests that serve as microrefugia for a wide range of species under the escalating climate change. We used camera trap survey covering 250 km2 of climate microrefugia in Dadeldhura hills in far western region of Nepal. We used 62 trapping locations accumulating 1800 trap nights taking 98,916 photographs in 62 days-survey period during the summer season of 2020. We photographed 23 mammalian species with estimated species richness of 30 species (95% CI: 25-34) based on multi-species occupancy model. We estimated overall species occupancy ψ(SE(ψ)) to be 0.87 (0.09) in climatic microrefugia. While human activity predominated throughout the day, the majority of animals was found to exhibit nocturnal temporal patterns. Tiger and hyaena, two of the top predators, were newly discovered in the western Himalayan range of Nepal, with their discovery at the 34 highest elevations of 2511 meters and 2000m, respectively. In Nepal, high-altitude tiger range is characterized by tiger distribution above a 2000 m cutoff representing habitats in the physiographic zone of high mountains and above. Our findings establish a baseline and show that the climatic microrefugia that have been identified have high levels of species richness and occupancy, which characterize the Dadeldhura hill forest ranges as biologically varied and ecologically significant habitat. These areas identified as climatic microrefugia habitats should be the focus of conservation efforts, particularly efforts to reduce human disturbance and adapt to climate change.

COVID-19 lockdown highlights impact of recreational activities on the behaviour of coral reef fishes

In 2020, the COVID-19 pandemic led to a reduction in human activities and restriction of all but essential movement for much of the world's population. A large, but temporary, increase in air and water quality followed, and there have been several reports of animal populations moving into new areas. Extending on long-term monitoring efforts, we examined how coral reef fish populations were affected by the government-mandated lockdown across a series of Marine Protected Area (MPA) and non-Marine Protected Area (nMPA) sites around Moorea, French Polynesia. During the first six-week lockdown that Moorea experienced between March and May 2020, increases (approx. two-fold) in both harvested and non-harvested fishes were observed across the MPA and nMPA inner barrier reef sites, while no differences were observed across the outer barrier sites. Interviews with local amateur and professional fishers indicated that while rules regarding MPA boundaries were generally followed, some subsistence fishing continued in spite of the lockdown, including within MPAs. As most recreational activities occur along the inner reef, our data suggest that the lockdown-induced reduction in recreational activities resulted in the recolonization of these areas by fishes, highlighting how fish behaviour and space use can rapidly change in our absence.