The in situ bacterial production of fluorescent organic matter; an investigation at a species level

Fluorescence characteristics of dissolved organic matter (DOM) in bottled drinking water of different countries: A potential risk to public health

Bottled drinking water of numerous brands from different countries, including Bangladesh, Malaysia, Australia, India, Singapore, Norway, Japan, Vietnam, and Taiwan, were studied using three-dimensional fluorescence (excitation-emission matrix, EEM) spectroscopy and multivariate parallel factor analysis (PARAFAC) model. Fluorescent-dissolved organic matter (DOM) components such as microbial processed tyrosine-, fulvic acid (M)-, and tryptophan-like had maximum intensity/concentration at 70.8%, 16.7%, and 12.5% bottled drinking water samples, respectively. The total intensity of all fluorescing DOM components was minimum and maximum in one of the brands from Australia and Vietnam, respectively. Unlike in Japan, the concentrations of DOM components in bottled drinking water were comparable to or higher than groundwater, freshwater, and marine water in Bangladesh, Malaysia, India, and Taiwan. The concentration of Escherichia coli was quantified from its significant correlation equation with the microbial-processed tryptophan-like component. Apart from 60% and 20% of bottled water samples from Malaysia and Bangladesh, the remaining samples of studied countries were medium to very high-risk because of E. coli signatures. The adverse health impacts from previously identified over-acceptable-limit mineral concentrations in bottled drinking water are discussed. DOM components at such concentrations in bottled drinking water also strengthened doubts about the efficiency of conventional water treatment techniques and biofilm control. Economic indicators of the studied countries affirmed that willingness and proper management knowledge are necessary to ensure safe bottled drinking water besides budget and labor wages. PRACTITIONER POINTS: Higher protein-like components intensity than humic-like affirmed microbial abundance Risks for E. coli availability was medium to very high in maximum samples Adverse health impacts for overlimit Pb, Al, and PO4 3- minerals in Bangladeshi brands Inefficiency of drinking water treatment techniques in DOM and biofilm control Importance of labor wage, willingness, and knowledge for drinking water treatment.

Compositions and concentrations of dissolved organic matter, selected elements and anions in German drinking waters

Dissolved organic matter (DOM) in water resources can lead to various drinking water quality issues, including undesirable color, taste, and odor, while also enhancing the mobility of heavy metals and promoting the formation of disinfection byproducts. This study investigated DOM concentrations and compositions in German drinking waters using fluorescence spectroscopy and size-exclusion chromatography coupled with organic carbon detection (LC-OCD). Additionally, the occurrence of selected elements and other inorganic ions were studied. Eighty-nine (89) drinking water samples were collected with the help of residents across Germany. The study revealed that DOM concentrations ranged from 0.3 to 5.7 mg/L, primarily due to humic substances. DOM fractions identified using LC-OCD and fluorescence spectroscopy showed a correlation, indicating that an increase in organic carbon resulted in an increase in fluorescent DOM, as expected due to the aromatic character of humic substances. Heavy metal concentrations in drinking waters were below the regulatory limits set by the German Drinking Water Ordinance (TrinkwV) for safe drinking water, except for one example of a lead concentration, which was 16.2 μg/L. No specific relation was found between the sources of drinking water (including surface water, groundwater, and bank filtrate) and the concentration and composition of DOM, as well as the occurrence of heavy metals. However, correlations between vanadium and chromium, nickel and lead, calcium and magnesium, and calcium and sulfate suggested that these components may share common sources or exhibit similar geochemical behaviors.

Mechanism of A. oleivorans S4 treating soluble phosphorus deficiency and hydrocarbon contamination simultaneously

Both soluble phosphorus (P) deficiency and petroleum hydrocarbon contamination represent challenges in soil environments. While phosphate-solubilizing bacteria and hydrocarbon-degrading bacteria have been identified and employed in environmental bioremediation, the bacteria co-adapted to soluble P deficiency and hydrocarbon contamination has rarely been reported. This study explored the ability of Acinetobacter oleivorans S4 (A. oleivorans S4) to solubilize phosphate using n-hexadecane (H), glucose (G), and a mixed carbon source (HG) in tricalcium phosphate (TCP) medium. A. oleivorans S4 exhibited robust growth in H-TCP, releasing 31 mg L-1 of soluble P. Conversely, A. oleivorans S4 barely grew in G-TCP, releasing 654 mg L-1 of soluble P. In HG-TCP, biomass surpassed that in H-TCP, with phosphate release comparable to that in G-TCP. HPLC analysis revealed a small amount of TCA cycle acids in H-TCP and a large amount of gluconate in G-TCP and HG-TCP. Transcriptomic analysis showed elevated expression of genes associated with alkane degradation, P starvation, N utilization, and trehalose synthesis in H-TCP, revealing the molecular co-adaptation mechanism of A. oleivorans S4. Furthermore, the addition of glucose enhanced alkane degradation, P and N utilization, and reduced trehalose synthesis. It indicated that incomplete glucose metabolism may provide energy for other reactions, and the increase in soluble P mediated by gluconate may alleviate oxidative stress. Overall, A. oleivorans S4 proves promising for remediating soluble P-deficient and hydrocarbon-contaminated environments, and glucose stimulates its transformation into a super phosphate-solubilizing bacterium.

Effects of polystyrene microplastics on the extracellular and intracellular dissolved organic matter released by Skeletonema costatum using a novel in situ method

Microplastics (MPs) affect the physicochemical algal-dissolved organic matter properties, indirectly influencing the environmental behavior of contaminants including persistent organic pollutants and heavy metals. Limited research is available on the roles played by intracellular- and extracellular-dissolved organic matter (I-DOM and E-DOM) in the processes that affect the environmental behavior of contaminants. Furthermore, the effects of MPs on the production of I-DOM and E-DOM, as well as their environmental behaviors, remain uncertain. A critical issue lies in the challenge of quantitatively identifying I-DOM and E-DOM in situ. In this work, a new fluorescence ratio method was developed and applied to in situ examine the impacts of polystyrene (PS) MPs (50, 500 nm, and 5 μm) on the I-DOM and E-DOM released by Skeletonema costatum (S. costatum). The experimental results indicated that the detection limits were 0.06 mg L-1, with the respective minimum detectable proportions being 2% for both E-DOM and I-DOM. The suppressive effects of 10-50 mg L-1 of 50 and 500 nm PS MPs on the cell proliferation of S. costatum and the E-DOM secretion were most pronounced on day 6. And the rates of suppression of E-DOM secretion were 10.1%-18.2% and 4.2%-13.9%, respectively. The exposure of algal cells to 50 mg L-1 of 50 and 500 nm PS MPs led to cell rupture and the leakage of I-DOM on day 6. This suggests that the developed method in the laboratory could offer a promising approach for studying the generation of E-DOM and I-DOM in situ, as well as their environmental behaviors affected by MPs.

Online monitoring of greywater reuse system using excitation-emission matrix (EEM) and K-PARAFACs

A currently increasing interest in water reuse is met with the concern about water quality. Excitation-emission matrix (EEM) measurements, which are widely implemented in laboratory analysis, emerge as a promising tool for characterizing both microbial and chemical water qualities in the online monitoring of water reuse systems. However, the robustness of EEM measurements has been rarely validated in actual online monitoring campaigns where predictions are made for new samples independent of those used to establish EEM analysis models, including the popular parallel factor analysis (PARAFAC). In this study, two strategies of conducting PARAFAC were examined for the online monitoring of a greywater reuse system using two EEM datasets from two monitoring periods for model establishment and model testing respectively. With the first strategy that is commonly used in laboratory analyses, an entire EEM datasets from one period was used to establish one PARAFAC model, and the maximum fluorescence intensity (Fmax) of a PARAFAC component was used to predict total cell count (TCC) in another period. However, under the disturbance of dissolved organic matter (DOM) fluorescence in the background, Fmax gave unreliable predictions in model testing. To address this problem, a second and novel strategy was proposed using an EEM clustering and PARAFAC component shift mining technique. This unsupervised algorithm, named K-PARAFACs, automatically groups EEMs into K clusters and on each cluster establishes a cluster-specific PARAFAC model with distinct component shapes. With this method, multiple PARAFAC models were established on one EEM dataset, with each model representing samples with certain TCC ranges and DOM compositions. In model testing, these cluster-specific PARAFAC models served as EEM classifiers. A new sample was not characterized by Fmax but by the cluster-specific model that best fitted the EEM signal of the sample with the least numerical error. The proposed strategy demonstrates its robustness by successfully predicting the TCC trend in test datasets. Our findings suggest that K-PARAFACs is a promising tool that enables robust qualitative monitoring of water reuse systems with background DOM variability.

Temporal drivers of tryptophan-like fluorescent dissolved organic matter along a river continuum

Tryptophan-like fluorescence (TLF) is used to indicate anthropogenic inputs of dissolved organic matter (DOM), typically from wastewater, in rivers. We hypothesised that other sources of DOM, such as groundwater and planktonic microbial biomass can also be important drivers of riverine TLF dynamics. We sampled 19 contrasting sites of the River Thames, UK, and its tributaries. Multivariate mixed linear models were developed for each site using 15 months of weekly water quality observations and with predictor variables selected according to the statistical significance of their linear relationship with TLF following a stepwise procedure. The variables considered for inclusion in the models were potassium (wastewater indicator), nitrate (groundwater indicator), chlorophyll-a (phytoplankton biomass), and Total bacterial Cells Counts (TCC) by flow cytometry. The wastewater indicator was included in the model of TLF at 89 % of sites. Groundwater was included in 53 % of models, particularly those with higher baseflow indices (0.50-0.86). At these sites, groundwater acted as a negative control on TLF, diluting other potential sources. Additionally, TCC was included positively in the models of six (32 %) sites. The models on the Thames itself using TCC were more rural sites with lower sewage inputs. Phytoplankton biomass (Chlorophyll-a) was only used in two (11 %) site models, despite the seasonal phytoplankton blooms. It is also notable that, the wastewater indicator did not always have the strongest evidence for inclusion in the models. For example, there was stronger evidence for the inclusion of groundwater and TCC than wastewater in 32 % and 5 % of catchments, respectively. Our study underscores the complex interplay of wastewater, groundwater, and planktonic microbes, driving riverine TLF dynamics, with their influence determined by site characteristics.

Co-inoculation of fungi and desert cyanobacteria facilitates biological soil crust formation and soil fertility

The inoculation of cyanobacteria for enriching soil nutrients and forming biological soil crusts (BSCs) is considered an effective means to restore degraded soil. However, there are limited studies on the application of co-inoculation of fungi and cyanobacteria for degraded soil remediation. In this study, a high exopolysaccharide-secreting fungi Zh2 was isolated from lichen BSCs in Hobq Desert, and co-inoculated with a cyanobacterial strain identified as Phormidium tenue in different proportions to form BSCs on sand during a 35 days incubation period. Results revealed significant differences in crust biomass and soil properties among crusts with different cyanobacterial/fungal inoculation ratios. Microbial biomass, soil nutrient content and enzyme activities in crusts co-inoculated with cyanobacteria and fungi were higher than those inoculated with cyanobacteria and fungi alone. The inoculation of cyanobacteria contributed to the fulvic-like accumulation, and the inoculated fungi significantly increased the humic-like content and soil humification. Redundancy analysis showed that the inoculation of cyanobacteria was positively correlated with the activities of urease and phosphatase, and the content of fulvic-like. Meanwhile, the inoculation of fungi was positively correlated with the contents of total carbon, total nitrogen and humic-like, the activities of catalase and sucrase. Cyanobacteria and fungi play distinct roles in improving soil fertility and accumulating dissolved organic matter. This study provides new insights into the effects of cyanobacteria and fungi inoculations on the formation and development of cyanobacterial-fungus complex crusts, offering a novel method for accelerating induced crust formation on the surface of sand.

Dissolved organic matter (DOM) is independently stratified in thermally stratified water bodies

Thermal stratification often occurs in deep-water bodies, including oceans, lakes, and reservoirs. Dissolved organic matter (DOM) plays a critical role in regulating the dynamics of aquatic food webs and water quality in aquatic ecosystems. In the past, thermal stratification boundaries have been sometimes used exclusively to analyze the vertical distribution of DOM in thermally stratified water bodies. However, the validity of this practice has been challenged. Currently, there is limited understanding of the formation mechanism and stratification of the vertical distribution of DOM in thermally stratified water bodies, which hinders the analysis of the interactions between DOM and vertical aquatic ecological factors. To address this gap, we conducted a comprehensive study to extensively collect the vertical distribution of DOM in thermally stratified water bodies and identify the primary factors influencing this distribution. We found that DOM was independently stratified in thermally stratified water bodies (including two cases in unstratified water bodies), and that the formation mechanisms and statuses of DOM stratification were different from those of thermal stratification. The boundaries and numbers of DOM stratification were generally inconsistent with those of thermal stratification. Therefore, it is more accurate to divide DOM into different layers according to its own vertical profile, and analyze DOM characteristics of each layer based on its own stratification instead of thermal stratification. This study sheds light on the relationship between DOM and thermal stratification and provides a novel approach for analyzing DOM vertical distribution characteristics and their impact on aquatic ecosystems. This finding also holds significant implications for the design and implementation of environmental management programs aimed at preserving the health and functionality of aquatic ecosystems.

Unique dissolved organic matter molecules and microbial communities in rhizosphere of three typical crop soils and their significant associations based on FT-ICR-MS and high-throughput sequencing analysis

Using cucumber, maize, and ryegrass as model plants, the diversity and uniqueness of the molecular compositions of dissolved organic matter (DOM) and the structures of microbial communities in typical crop rhizosphere soils, as well as their associations, were investigated based on high-resolution mass spectrometry combined with high-throughput sequencing. The results showed that the rhizosphere contained 2200 organic molecules that were not identified in the non-rhizosphere soils, as characterized by FT-ICR-MS. The rhizosphere DOM molecules generally contained more N, S, and P heteroatoms, stronger hydrophilicity, and more refractory organic matter, representing high and complex chemical diversity characteristics. 16SrRNA sequencing results demonstrated that Proteobacteria, Actinomycetes and Firmicutes were the dominant flora in the soils. Plant species could significantly change the composition and relative abundance of rhizosphere microbial populations. The microbial community structures of rhizosphere and non-rhizosphere soils showed significant differences at both the phylum and class levels. Multiple interactions between the microorganisms and DOM compositions formed a complex network of relationships. There were strong and remarkable positive or negative couplings between different sizes and categories of DOM molecules and the specific microbial groups (P < 0.05, |R| ≥ 0.9) in the rhizosphere soils as shown by network profiles. The correlations between DOM molecules and microbial groups in rhizosphere soils had plant species specificity. The results above emphasized the relationship between the heterogeneity of DOM and the diversity of microbial communities, and explored the molecular mechanisms of the biochemical associations in typical plant rhizosphere soils, providing a foundation for in-depth understanding of plant-soil-microbe interactions.

Seasonal variations in dissolved organic matter concentration and composition in an outdoor system for bank filtration simulation

Dissolved organic matter (DOM) in surface waters can vary markedly in character depending on seasonal variations such as rainfall intensity, UV radiations and temperature. Changes in DOM as well as temperature and rainfall intensity over the year can affect the biochemical processes occurring in bank filtration (BF). Identification and characterization of DOM in the surface water could help to optimize the water treatment and provide stable and safe drinking water. This study investigated year-long variations of DOM concentrations and compositions in a surface water of a circulated outdoor pond (research facility) connected to a BF passage. DOM was dominated by humic substances and a changing pattern of DOM in surface water was observed throughout the year. A significant increase of DOM (∼ 38%) in surface water was noted in August compared to November. The fluorescent DOM showed that DOM in summer was enriched with the degradable fraction whilst non-degradable fraction was dominated in winter. A constant (1.7 ± 0.1 mg/L) effluent DOM was recirculated in the system throughout the year. DOM removal through BF varied between 4% to 39% and was achieved within a few meters after infiltration and significantly correlated with influent DOM concentration (R2 = 0.82, p < 0.05). However, no significant (p > 0.05) change in the removal of DOM was observed in two subsurface layers (upper and lower). This study highlights the presence of a constant non-degradable DOM in the bank filtrate, which was not affected by temperature, redox conditions and UV radiations.

Characterization of DOM released from bacteria in response to chlorine in water based on indicator bacteria E. coli

ABSTRACTIn this study, Escherichia coli (E. coli) was used as an indicator bacterium treated with five different concentrations of chlorine (0.1; 0.5; 1.0; 2.0, and 5.0 mg/L) and without chlorine (0.0 mg/L) to evaluate the changes in the DOM characteristics. The dissolved organic carbon (DOC) concentration initially increased along with the chlorine concentrations and decreased after 24 h (0.0 and 0.1 mg/L) and 168 h (0.5; 1.0; 2.0 and 5.0 mg/L). Ultra-violet absorbance at 260 nm (UV260) showed that the absorbance decreased for control without chlorine (0.0 mg/L) and 0.1 mg/L chlorine, while increased for other concentrations of chlorine within 120 h. The DOC and UV260 results indicated that the high concentrations of chlorine initiated high contents of DOM which contained more humic-like molecules than the DOM released from E. coli without chlorine. Fluorescence excitation-emission matrix (EEM) analysis suggested that the DOM released from E. coli without chlorine enriched with protein-like substances, whereas the fulvic-like and humic-like substances more intensified in the DOM for the high concentrations of chlorine (>1.0 mg/L). The molecular weight distribution of DOM showed that the intensity of high molecular weight substances and polydispersity increased along with chlorine concentration and contact time, whereas the low molecular weight substances were relatively higher in the DOM for control without chlorine. The obtained results of this study would be useful for a better understanding of the variation of DOM during treatment and could be used as an important reference for optimizing the operation condition of the water treatment plants.

Rotifer distribution patterns in relation to dissolved organic matter in the middle reaches of Huai River Basin during the dry season

Increased dissolved organic matter (DOM) may induce water browning and affect zooplankton communities by changing photochemical environment, microbial food web, and bioavailability of organic carbon supply. However, little is known about the relationship between DOM components and rotifers in natural rivers, relative to the cladocerans and copepods. Here, we investigated the spatial patterns of rotifer distribution in relation to DOM by collecting forty-four water samples from four areas in the middle reaches of Huai River Basin. Results revealed that DOM was described by two humic-like and two protein-like components. There were significant differences in the composition and diversity of rotifer communities among areas, which might be related to autochthonous and allochthonous DOM as well as geographical distances. Specifically, rotifer communities were mainly related to molecular weight, substituents on the aromatic ring, humification level, and protein-like materials. Autochthonous and fresh DOM was positively associated with rotifer abundance and richness, and terrigenous humic-like substances were positively associated with rotifer diversity and evenness. There was a reciprocal effect between rotifer and DOM. Our findings will contribute to the understanding of the possible effects of water browning on rotifer communities, providing new insights into the key role of DOM and rotifer in the energy transfer of aquatic systems.

Fluorescent Dissolved Organic Matter Components as Surrogates for Disinfection Byproduct Formation in Drinking Water: A Critical Review

Disinfection byproduct (DBP) formation, prediction, and minimization are critical challenges facing the drinking water treatment industry worldwide where chemical disinfection is required to inactivate pathogenic microorganisms. Fluorescence excitation-emission matrices-parallel factor analysis (EEM-PARAFAC) is used to characterize and quantify fluorescent dissolved organic matter (FDOM) components in aquatic systems and may offer considerable promise as a low-cost optical surrogate for DBP formation in treated drinking waters. However, the global utility of this approach for quantification and prediction of specific DBP classes or species has not been widely explored to date. Hence, this critical review aims to elucidate recurring empirical relationships between common environmental fluorophores (identified by PARAFAC) and DBP concentrations produced during water disinfection. From 45 selected peer-reviewed articles, 218 statistically significant linear relationships (R2 ≥ 0.5) with one or more DBP classes or species were established. Trihalomethanes (THMs) and haloacetic acids (HAAs), as key regulated classes, were extensively investigated and exhibited strong, recurrent relationships with ubiquitous humic/fulvic-like FDOM components, highlighting their potential as surrogates for carbonaceous DBP formation. Conversely, observed relationships between nitrogenous DBP classes, such as haloacetonitriles (HANs), halonitromethanes (HNMs), and N-nitrosamines (NAs), and PARAFAC fluorophores were more ambiguous, but preferential relationships with protein-like components in the case of algal/microbial FDOM sources were noted. This review highlights the challenges of transposing site-specific or FDOM source-specific empirical relationships between PARAFAC component and DBP formation potential to a global model.

Transformation of algal-dissolved organic matter via sunlight-induced photochemical and microbial processes: interactions between two processes

Algal-dissolved organic matter (ADOM) is an important fraction of dissolved organic carbon (DOC) in eutrophic water. Although ADOM is known to be readily transformed by microbes, the role of sunlight-induced photochemical process and the interactions between two processes on ADOM transformation remains unclear. In this study, three types of treatments for ADOM, including photochemical process under natural solar light (L treatment), microbial process (M treatment), and the simultaneous photochemical plus microbial process (L&M), were performed for 18 days. Our results showed that M treatment was more effective for the loss of DOC, chromophoric DOM (CDOM) at short wavelengths (a₂₅₄ and a₂₈₀), than L treatment, while L treatment was more effective for the transformation of a₃₅₀ and the fluorescent components of the ubiquitous humic-like component and the tryptophan-like component. Comparison in the decay kinetics of DOC and CDOM in the three treatments showed that the simultaneous photochemical and biological processes exhibited an inhibitory effect on DOC decay rate but not the percentage of labile DOC fraction. Higher relative abundance of protein-like substances was found after L&M treatment, while the relative abundance of humic-like substance and aromaticity increased after M treatment, and the low molecular-weight compounds were produced after L treatment. Our results emphasized the importance of photochemistry in processing ADOM to mediate the chemodiversity in natural water.

Photoinduced production of substances with humic-like fluorescence, upon irradiation of water samples from alpine lakes

Evidence is here provided that irradiation of some lake water samples can trigger the formation of fluorophores with humic-like properties, at the same time increasing water absorbance. This phenomenon is the opposite of photobleaching, which is often observed when natural waters are irradiated. The photoproduced humic-like fluorophores observed here would be of autochthonous rather than allochthonous origin, which marks a difference with the fraction of humic substances that derives from terrestrial sources. Photogeneration of humic-like compounds can be highlighted in water samples where the fluorescence signal of initially occurring humic substances is low, so that their photobleaching is minimised. Samples that are most likely to show photoinduced formation of humic-like fluorophores are in fact characterised by high values of protein-like vs. humic-like contribution ratios to fluorescence, as evidenced by parallel factor (PARAFAC) analysis. Mountain lakes in late summer appear to be suitable candidates to highlight the described phenomenon. In some cases, lake-water irradiation caused a decrease in the spectral slope of the absorbance that, together with increasing absorbance values, is consistent with an increase in molecular mass and aromaticity of organic matter. The absorbance increase triggered by irradiation might play a role in screening biologically harmful UV radiation, in mountain environments that would otherwise be characterised by very clear water that allows for easy transmission of UV light along the water column.

Dissolved organic matter transformations in a freshwater rivermouth

River-to-lake transitional areas are biogeochemically active ecosystems that can alter the amount and composition of dissolved organic matter (DOM) as it moves through the aquatic continuum. However, few studies have directly measured carbon processing and assessed the carbon budget of freshwater rivermouths. We compiled measurements of dissolved organic carbon (DOC) and DOM in several water column (light and dark) and sediment incubation experiments conducted in the mouth of the Fox river (Fox rivermouth) upstream from Green Bay, Lake Michigan. Despite variation in the direction of DOC fluxes from sediments, we found that the Fox rivermouth was a net sink of DOC where water column DOC mineralization outweighed the release of DOC from sediments at the rivermouth scale. Although we found DOM composition also changed during our experiments, alterations in DOM optical properties were largely independent of the direction of sediment DOC fluxes. We found a consistent decrease in humic-like and fulvic-like terrestrial DOM and a consistent increase in the overall microbial composition of rivermouth DOM during our incubations. Moreover, greater ambient total dissolved phosphorus concentrations were positively associated with the consumption of terrestrial humic-like, microbial protein-like, and more recently derived DOM but had no effect on bulk DOC in the water column. Unexplained variation indicates that other environmental controls and water column processes affect the processing of DOM in this rivermouth. Nonetheless, the Fox rivermouth appears capable of substantial DOM transformation with implications for the composition of DOM entering Lake Michigan.

Supplementary Information

The online version contains supplementary material available at 10.1007/s10533-022-01000-z.

Multiple fluorescence approaches to identify rapid changes in microbial indicators at karst springs

Karst springs are globally important for drinking water supply but are often also exceptionally vulnerable to contamination. Such springs usually exhibit strong variation in microbial water quality in sharp response to rainfall events, thus, posing a health hazard to consumers of water supplied from these sources. The rapid detection of such changes is extremely important as well as being able to establish a link to the sources of such pollution, so that appropriate measures can be taken both in terms of immediate protection of human health and the management of karst aquifers. In this study, a fluorescence-based multi-parameter approach was trialed in order to evaluate which methods can be used to monitor rainfall-induced rapid changes in microbial water quality at karst springs, as well as determine whether such changes can be linked to sources of human effluent contamination. The results from three monitoring periods at two karst springs revealed marked responses to rainfall events for all of the microbial parameters measured. Total cell count (TCC) measurements using flow cytometry (FCM) showed very strong positive correlations with the more conventionally monitored faecal indicator bacteria (FIB) and total coliforms (TC), indicating that such a fluorescence-based and cultivation-independent technique can be very useful to indicate rapid changes in microbial water quality at karst springs. Furthermore, very strong positive correlations were also found between tryptophan-like fluorescence (TLF) measurements and concentrations of all monitored microbial parameters, again demonstrating that such a fluorescence-based approach can also be useful for detecting rapid changes in concentrations of traditional faecal indicators. Interestingly, it was found that fluorescent whitening compounds (FWCs) signals do not necessarily follow temporal variations of microbial indicators. However, the frequency of detection of positive FWCs signals may still reveal useful information about the overall magnitude of human wastewater effluent impacts on karst aquifer systems.

Large-scale study on groundwater dissolved organic matter reveals a strong heterogeneity and a complex microbial footprint

Dissolved organic matter (DOM) in terrestrial groundwater is generally low in concentration compared to inland surface waters. However, the overall amount of groundwater DOM is huge, as there is 100 times more fresh groundwater than fresh surface water. To date, research on groundwater DOM has merely focused on specific threats to humans such as e.g. DOM and heavy metal complexations and DOM from hydrocarbon contamination. A comprehensive, large-scale study of groundwater is still missing. Here, we examine DOM properties in a large-scale approach with regards to surface characteristics such as land use and altitude, aquifer characteristics as well as microbial features. We analyzed 1600 water samples from 100 groundwater bodies all over Austria with regards to their DOM quantity, quality and bacterial abundance (BA). DOM quality was evaluated with self-organizing maps on fluorescence excitation-emission-matrices (EEMs) combined with Ward clustering and subsequent parallel factor analysis to describe DOM properties of each cluster. We evaluated how these clusters differed among each other, based on DOC and nitrate concentrations, BA and selected environmental characteristics. Our results show that fluorescence components in groundwater resemble components found in other groundwater studies, in studies from forest streams, the dark ocean, agricultural catchments and wastewater treatment plants. The latter fluorescence components were associated with a cluster that is characterized by agricultural and urban land use, as well as by high nitrate concentrations. Clusters with an increased abundance of high-molecular weight and humic components, commonly associated with vascular plant and soil origin, correlated with a higher bacterial abundance. This observation provides evidence that elevated numbers of suspended bacteria mainly originate from the surface. Our study shows that DOM fluorescence can be a fast monitoring tool to identify aquifers under anthropogenic stress and delineate sensitive recharge areas with high surface-groundwater interaction.

A case study: The deployment of a novel in situ fluorimeter for monitoring biological contamination within the urban surface waters of Kolkata, India

The quality and health of many of our vital freshwater systems are poor. To tackle this with ever increasing pressures from anthropogenic and climatic changes, we must improve water quality monitoring and devise and implement more appropriate water quality parameters. Recent research has highlighted the potential for Peak T fluorescence (tryptophan-like fluorescence, TLF) to monitor microbial activity in aquatic systems. The VLux TPro (Chelsea Technologies Ltd., UK), an in situ real-time fluorimeter, was deployed in different urban freshwater bodies within Kolkata (West Bengal, India) during March 2019. This study is the first to apply this technology in surface waters within a densely populated urban area. Spot-sampling was also undertaken at 13 sampling locations enabling physicochemical analysis, bacterial enumeration and determination of nutrient (nitrate and phosphate) concentrations. This case study has demonstrated the ability of an in situ fluorimeter, VLux TPro, to successfully identify both biological contamination events and potential elevated microbial activity, related to nutrient loading, in complex surface freshwaters, without the need for expensive and time-consuming laboratory analysis.

A continuous, in-situ, near-time fluorescence sensor coupled with a machine learning model for detection of fecal contamination risk in drinking water: Design, characterization and field validation

We designed and validated a sensitive, continuous, in-situ, remotely reporting tryptophan-like fluorescence sensor and coupled it with a machine learning model to predict high-risk fecal contamination in water (>10 colony forming units (CFU)/100mL E. coli). We characterized the sensor's response to multiple fluorescence interferents with benchtop analysis. The sensor's minimum detection limit (MDL) of tryptophan dissolved in deionized water was 0.05 ppb (p <0.01) and its MDL of the correlation to E. coli present in wastewater effluent was 10 CFU/100 mL (p <0.01). Fluorescence response declined exponentially with increased water temperature and a correction factor was calculated. Inner filter effects, which cause signal attenuation at high concentrations, were shown to have negligible impact in an operational context. Biofouling was demonstrated to increase the fluorescence signal by approximately 82% in a certain context, while mineral scaling reduced the sensitivity of the sensor by approximately 5% after 24 hours with a scaling solution containing 8 times the mineral concentration of the Colorado River. A machine learning model was developed, with TLF measurements as the primary feature, to output fecal contamination risk levels established by the World Health Organization. A training and validation data set for the model was built by installing four sensors on Boulder Creek, Colorado for 88 days and enumerating 298 grab samples for E. coli with membrane filtration. The machine learning model incorporated a proxy feature for fouling (time since last cleaning) which improved model performance. A binary classification model was able to predict high risk fecal contamination with 83% accuracy (95% CI: 78% - 87%), sensitivity of 80%, and specificity of 86%. A model distinguishing between all World Health Organization established risk categories performed with an overall accuracy of 64%. Integrating TLF measurements into an ML model allows for anomaly detection and noise reduction, permitting contamination prediction despite biofilm or mineral scaling formation on the sensor's lenses. Real-time detection of high risk fecal contamination could contribute to a major step forward in terms of microbial water quality monitoring for human health.

Characteristics of Chromophoric Dissolved Organic Matter (CDOM) Produced by Heterotrophic Bacteria Isolated from Aquaculture Systems

Heterotrophic bacteria (HB) play an important role in aquatic ecosystems as recyclers of dissolved organic matter (DOM). The objective of this study was to characterize the spectral characteristics of intracellular (IC), and extracellular (EC) compounds produced by 12 HB isolated from two aquaculture systems. Microorganisms belonging to the genera Bacillus, Paenibacillus, and Psychrobacillus were identified by analysis of the 16S ribosomal gene. Aliquots of bacterial culture were centrifugated every hour (1st to 7th) to obtain the EC compounds. The pellet was ultrasound-lysed to obtain the IC compounds. Excitation-emission matrices were used in combination with parallel factor analysis (PARAFAC) to characterize the fluorescent components of DOM (FDOM). PARAFAC indicated two protein-like components and two humic-like components in both cell spaces. At the IC, B. macquariensis showed a high fluorescence index (FI), probably associated with fulvic acid, quinones, or ketones. Psychrobacillus insolitus showed an inverse correlation between spectral slopes S275–295 and S350–400 in the EC and IC fractions, which may indicate differential release of low and high molecular weight molecules in these two fractions. The opposite occurred with B. licheniformis and P. alvei. The origin of FDOM in HB is an important finding of this work. The most significant amount of protein-like substances was produced at the IC level, with the humic- and fulvic-type at the EC. The main finding of this work is the evidence of differential production of humic-type or protein-type FDOM production by HB species from marine and freshwater aquaculture systems in their intracellular and extracellular fractions, as well different relative molecular weight. For aquaculture, these findings suggest that some bacterial species show promise in supplying essential amino acids to growing organisms, and others play a major role in nutrient exchange and the global carbon cycle.

A new conceptual framework for the transformation of groundwater dissolved organic matter

Groundwater comprises 95% of the liquid fresh water on Earth and contains a diverse mix of dissolved organic matter (DOM) molecules which play a significant role in the global carbon cycle. Currently, the storage times and degradation pathways of groundwater DOM are unclear, preventing an accurate estimate of groundwater carbon sources and sinks for global carbon budgets. Here we reveal the transformations of DOM in aging groundwater using ultra-high resolution mass spectrometry combined with radiocarbon dating. Long-term anoxia and a lack of photodegradation leads to the removal of oxidised DOM and a build-up of both reduced photodegradable formulae and aerobically biolabile formulae with a strong microbial signal. This contrasts with the degradation pathway of DOM in oxic marine, river, and lake systems. Our findings suggest that processes such as groundwater extraction and subterranean groundwater discharge to oceans could result in up to 13 Tg of highly photolabile and aerobically biolabile groundwater dissolved organic carbon released to surface environments per year, where it can be rapidly degraded. These findings highlight the importance of considering groundwater DOM in global carbon budgets.

The in situ Production of Aquatic Fluorescent Organic Matter in a Simulated Freshwater Laboratory Model

Dissolved organic matter (DOM) is ubiquitous throughout aquatic systems. Fluorescence techniques can be used to characterize the fluorescing proportion of DOM, aquatic fluorescent organic matter (AFOM). AFOM is conventionally named in association with specific fluorescence “peaks,” which fluoresce in similar optical regions as microbially-derived proteinaceous material (Peak T), and terrestrially-derived humic-like compounds (Peaks C/C+), with Peak T previously being investigated as a tool for bacterial enumeration within freshwaters. The impact of anthropogenic nutrient loading on the processing of DOM by microbial communities is largely unknown. Previous laboratory studies utilizing environmental freshwater have employed growth media with complex background fluorescence, or very high nutrient concentrations, preventing the investigation of AFOM production under a range of more representative nutrient concentrations within a matrix exhibiting very low background fluorescence. We describe a laboratory-based model with Pseudomonas aeruginosa that incorporates a low fluorescence growth matrix consisting of a simulated freshwater (SFW), representative of low-hardness freshwater systems allowing controlled nutrient conditions to be studied. The effects of microbial processing of DOM as a function of available nitrogen, phosphorous, and dissolved organic carbon (DOC) in the form of glucose were investigated over 48 h at highly resolved time increments. The model system demonstrates the production of a range of complex AFOM peaks in the presence and absence of DOC, revealing no linear relationship between cell numbers and any of the peaks for the bacterial species studied, with AFOM peaks increasing with microbial cell number, ranging from 55.2 quinine sulfate units (QSU) per 10⁶ cells to 155 QSU per 10⁶ cells (p < 0.05) for Peak T during the exponential growth phase of P. aeruginosa under high nutrient conditions with 5 mg L⁻¹ DOC. Nutrient and DOC concentration was found to cause differential production of autochthonous- or allochthonous-like AFOM, with lower DOC concentrations resulting in higher Peak T production relative to Peaks C/C+ upon the addition of nutrients, and high DOC concentrations resulting in higher Peak C/C+ production relative to Peak T. Our results show the production of allochthonous-like AFOM from a simple and non-fluorescent carbon source, and provide uncertainty in the use of Peak T as a reliable surrogate for specific bacterial enumeration, particularly in dynamic or nutrient-impacted environments, pointing toward the use of fluorescence as an indicator for microbial metabolism.

Heat Shock Response of the Active Microbiome From Perennial Cave Ice

Ice caves constitute the newly investigated frozen and secluded model habitats for evaluating the resilience of ice-entrapped microbiomes in response to climate changes. This survey identified the total and active prokaryotic and eukaryotic communities from millennium-old ice accumulated in Scarisoara cave (Romania) using Illumina shotgun sequencing of the ribosomal RNA (rRNA) and messenger RNA (mRNA)-based functional analysis of the metatranscriptome. Also, the response of active microbiome to heat shock treatment mimicking the environmental shift during ice melting was evaluated at both the taxonomic and metabolic levels. The putatively active microbial community was dominated by bacterial taxa belonging to Proteobacteria and Bacteroidetes, which are highly resilient to thermal variations, while the scarcely present archaea belonging to Methanomicrobia was majorly affected by heat shock. Among eukaryotes, the fungal rRNA community was shared between the resilient Chytridiomycota and Blastocladiomycota, and the more sensitive Ascomycota and Basidiomycota taxa. A complex microeukaryotic community highly represented by Tardigrada and Rotifera (Metazoa), Ciliophora and Cercozoa (Protozoa), and Chlorophyta (Plantae) was evidenced for the first time in this habitat. This community showed a quick reaction to heat shock, followed by a partial recovery after prolonged incubation at 4°C due to possible predation processes on the prokaryotic cluster. Analysis of mRNA differential gene expression revealed the presence of an active microbiome in the perennial ice from the Scarisoara cave and associated molecular mechanisms for coping with temperature variations by the upregulation of genes involved in enzyme recovery, energy storage, carbon and nitrogen regulation, and cell motility. This first report on the active microbiome embedded in perennial ice from caves and its response to temperature stress provided a glimpse into the impact of glaciers melting and the resilience mechanisms in this habitat, contributing to the knowledge on the functional role of active microbes in frozen environments and their response to climatic changes.

Changes in the characteristics of organic matter associated with hydrodynamics and phytoplankton size structure in the central-eastern Yellow Sea

The central-eastern Yellow Sea is an important region for transporting organic matter (OM) to the Pacific Ocean, however, there is limited information available regarding the characteristics and sources of OM in this area. The present study investigated the concentrations and stable isotopic compositions of carbon (δ¹³C) and nitrogen (δ¹⁵N) for particulate matter and sediment in the central-eastern Yellow Sea during April 2019. The physicochemical properties (i.e., salinity, temperature, fluorescence, and nutrients), size-fractionated phytoplankton biomass (Chl-a), and concentration and fluorescence characteristics of dissolved organic matter (DOM) were also determined. The satellite SST and Chl-a data indicated that mixing cold and warm water masses were observed. Phytoplankton blooms occurred a few days before our sampling campaign. Considering the high concentration of suspended solids in the bottom layer, resuspended sediment caused by tidal currents could be a major source of OM in coastal areas. The δ¹³C values of particulate organic matter (POM) in the coastal area were higher (-23 to -22‰) than those of OM from terrestrial sources (approximately -28 to -27‰). Instead, the lowest δ¹³C values were observed in the central part of our study area, where the relative abundance of picophytoplankton was high. These results indicated that phytoplankton-derived OM after phytoplankton spring blooms in the coastal area could be the primary source of OM rather than terrestrial origins. In addition, the source of OM that presented low δ¹³C values could be picophytoplankton-derived OM. The characteristics of DOM were related to biological processes (mediated by phytoplankton and bacteria) and resuspension of sedimentary organic matter. We did not detect an influx of large amounts of terrestrial OM in coastal sediments. Overall, the source and characteristics of OM appeared to be influenced by the hydrodynamics and the distribution properties of lower trophic-level organisms in the central-eastern Yellow Sea during the spring season.

In-situ fluorescence spectroscopy is a more rapid and resilient indicator of faecal contamination risk in drinking water than faecal indicator organisms

Faecal indicator organisms (FIOs) are limited in their ability to protect public health from the microbial contamination of drinking water because of their transience and time required to deliver a result. We evaluated alternative rapid, and potentially more resilient, approaches against a benchmark FIO of thermotolerant coliforms (TTCs) to characterise faecal contamination over 14 months at 40 groundwater sources in a Ugandan town. Rapid approaches included: in-situ tryptophan-like fluorescence (TLF), humic-like fluorescence (HLF), turbidity; sanitary inspections; and total bacterial cells by flow cytometry. TTCs varied widely in six sampling visits: a third of sources tested both positive and negative, 50% of sources had a range of at least 720 cfu/100 mL, and a two-day heavy rainfall event increased median TTCs five-fold. Using source medians, TLF was the best predictor in logistic regression models of TTCs ≥10 cfu/100 mL (AUC 0.88) and best correlated to TTC enumeration (ρ_s 0.81), with HLF performing similarly. Relationships between TLF or HLF and TTCs were stronger in the wet season than the dry season, when TLF and HLF were instead more associated with total bacterial cells. Source rank-order between sampling rounds was considerably more consistent, according to cross-correlations, using TLF or HLF (min ρ_s 0.81) than TTCs (min ρ_s 0.34). Furthermore, dry season TLF and HLF cross-correlated more strongly (ρ_s 0.68) than dry season TTCs (ρ_s 0.50) with wet season TTCs, when TTCs were elevated. In-situ TLF or HLF are more rapid and resilient indicators of faecal contamination risk than TTCs.

Characterisation of Organic Matter and Its Transformation Processes in On-Site Wastewater Effluent Percolating through Soil Using Fluorescence Spectroscopic Methods and Parallel Factor Analysis (PARAFAC)

This research has used fluorescence spectroscopy and parallel factor analysis (PARAFAC) in order to characterize dissolved organic matter in septic tank effluent, as it passes through the biomat/biozone, infiltrating into the unsaturated zone beneath domestic wastewater treatment systems (DWWTSs). Septic tank effluent and soil moisture samples from the percolation areas of two DWWTSs have been analyzed using fluorescence excitation–emission spectroscopy. Using PARAFAC analysis, a six-component model was obtained whereby individual model components could be assigned to humified organic matter, fluorescent whitening compounds (FWCs), and protein-like compounds. This has shown that fluorescent dissolved organic matter (FDOM) in domestic wastewater was dominated by protein-like compounds and FWCs and that, with treatment in the percolation area, protein-like compounds and FWCs are removed and contributions from terrestrially derived (soil) organic decomposition compounds increase, leading to a higher degree of humification and aromaticity. The results also suggest that the biomat is the most important element determining FDOM removal and consequently affecting DOM composition. Furthermore, no significant difference was found in the FDOM composition of samples from the percolation area irrespective of whether they received primary or secondary effluent. Overall, the tested fluorometric methods were shown to provide information about structural and functional properties of organic matter which can be useful for further studies concerning bacterial and/or virus transport from DWWTSs.

An ultrasensitive fluorimetric sensor for pre-screening of water microbial contamination risk

In recent years, global efforts have been directed towards the development of water safety routines, consequently demanding cost-effective sensors capable of detecting outbreaks at early stages. This work reports the development and study of an original in-field tryptophan fluorimetric sensor as a potential indicator of real-time microbial contamination in water. The sensor excitation and emission wavelengths were selected with respect to the coliform bacteria tryptophan peak; 280 nm for excitation and 330 nm for emission. The in-lab tests with standard samples show a detection limit of 4.89 nM (≈0.1 μg/l) for L-tryptophan. The sensor exhibited good linearity over three orders of magnitude and considerable detection reproducibility, which was confirmed during calibration tests. Small-scale in situ tests showed that the sensor was better correlated with coliform bacteria than other online sensors such as turbidity. This suggests that the fluorimetric tryptophan sensor can be integrated into early warning systems that quickly assess changes in water microbial quality.

Correspondence between DOM molecules and microbial community in a subtropical coastal estuary on a spatiotemporal scale

Dissolved organic matter (DOM) changes in quantity and quality over time and space, especially in highly dynamic coastal estuaries. Bacterioplankton usually display seasonal and spatial variations in abundance and composition in the coastal regions, and influence the DOM pool via assimilation, transformation and release of organic molecules. The change in DOM can also affect the composition of bacterial community. However, little is known on the correspondence between DOM molecules and bacterial composition, particularly through a systematic field survey. In this study, the spatiotemporal signatures of microbial communities and DOM composition in the subtropical coastal estuary of Xiamen are investigated over one and half years. The co-occurrence analysis between bacteria and DOM suggested microorganisms likely transformed the DOM from a relatively high (>400 Da) to a low (<400 Da) molecular weight, corresponding to an apparent increase in overall aromaticity. This might be the reason why microbial transformation renders "dark" organic matter visible in mass spectrometry due to more efficient ionization of microbial metabolites, as well as photodegradation processes. K- and r-strategists exhibited different correlations with two-size categories of DOM molecules owing to their different lifestyles and responses to environmental nutrient conditions. A comparison of the environmental variables and DOM composition with the microbial communities showed that the environmental/DOM variations played a more important role in shaping the microbial communities than vice versa. This study sheds light on the interactions between microbial populations and DOM molecules at the spatiotemporal scale, improving our understanding of microbial roles in marine biogeochemical cycles.

Laboratory In-Situ Production of Autochthonous and Allochthonous Fluorescent Organic Matter by Freshwater Bacteria

This work investigates the origin and range of fluorescent organic matter (FOM) produced in-situ by environmentally sourced freshwater bacteria. Aquatic FOM is an essential component in global carbon cycling and is generally classified as either autochthonous, produced in-situ via microbial processes, or allochthonous, transported into aquatic systems from external sources. We have demonstrated that, within laboratory model systems, environmentally sourced mixed microbial communities and bacterial isolates can produce and/or export FOM associated with both autochthonous and allochthonous material. This study focuses on fluorescence peak B, T, M, C and C+, exploring (1) the cellular nature of FOM produced, (2) FOM exported as extracellular material into the water column and (3) the impact of physical cell lysis on FOM signature. For the laboratory model systems studied, Peak T fluorescence is retained within bacterial cells (>68%), while Peak C fluorescence is mainly observed as extracellular material (>80%). Peak M is identified as both cellular and extracellular FOM, produced by all isolated freshwater microorganisms investigated. The origin of Peak C+ is postulated to originate from functional metabolites associated with specific microorganisms, seen specifically within the Pseudomonas sp. monoculture here. This work challenges the binary classification of FOM as either allochthonous or autochthonous, suggesting that FOM processing and production occurs along a dynamic continuum. Within this study, fluorescence intensity data for the environmental bacteria isolate monocultures are presented as enumeration corrected data, for the first time providing quantitative fluorescence data per bacterial colony forming unit (cfu). From this, we are able to assess the relative contribution of different bacteria to the autochthonous FOM pool and if this material is cellular or extracellular.

Biodegradation and Structural Modification of Humic Acids in a Compost Induced by Fertilization with Steelmaking Slag under Coastal Seawater, as Detected by TMAH-py-GC/MS, EEM and HPSEC Analyses

The compost's humic acid (HA) content decreased when it was fertilized in coastal seawater with steelmaking slag, as confirmed. This study clarified the cause for this change by a detailed analysis of the structural changes in HAs based on the TMAH-py-GC/MS, HPSEC, and 3D-EEM spectra. An increase in the levels of pyrolysates of tannic acid with a low polymerization degree was attributed to the biodegradation of a high polymerized aromatic structure. Moreover, analyses of 3D-EEM, supported by HPSEC, indicated that approximately 20 kDa of the fluorescent matter was generated at the protein-like peaks (Ex/Em = 220/340 and 275/350 nm) in HAs derived from a mixture of compost with steelmaking slag. It would be caused due to the formation of HAs from the bacterial by-product by a catalytic reaction of the steelmaking slag. From these findings reported herein, we conclude that bio-degradation was a major reason for the decreased HA content, and the formation of HA from a part of the degradation products. This would be a reason for the structural modification of HA under the seawater condition.

A year-long cyclic pattern of dissolved organic matter in the tap water of a metropolitan city revealed by fluorescence spectroscopy

Delivering drinking water with stable quality in metropolitan cities is a big challenge. This study investigated the year-long dynamics of dissolved organic matter (DOM) in the tap water and source water of a metropolitan city in southern China using fluorescence spectroscopy. The DOM detected in the tap water, and source water of Shenzhen city was season and location-dependent. A year-long cyclic trend of DOM was found with predominate protein-like fluorescence in the dry season compared to the humic-like enriched DOM in the wet season. A general DOM pattern was estimated by measuring the shift in dominant fluorescence regions on the excitation-emission matrix (EEM). The difference in fluorescent DOM (FDOM) composition (in terms of the ratio of protein-like to humic-like fluorescence) was above 200% between wet and dry seasons. The taps associated with reservoirs receiving water from the eastern tributary of Dongjiang River showed significant changes in protein-like contents than the taps with source water originating from the western part of the river. This study highlights the importance of optimizing drinking water treatment plants' operational conditions after considering seasonal changes and source water characteristics.

Advances in the characterization and monitoring of natural organic matter using spectroscopic approaches

Natural organic matter (NOM) is ubiquitous in environment and plays a fundamental role in the geochemical cycling of elements. It is involved in a wide range of environmental processes and can significantly affect the environmental fates of exogenous contaminants. Understanding the properties and environmental behaviors of NOM is critical to advance water treatment technologies and environmental remediation strategies. NOM is composed of characteristic light-absorbing/emitting functional groups, which are the "identification card" of NOM and susceptive to ambient physiochemical changes. These groups and their variations can be captured through optical sensing. Therefore, spectroscopic techniques are elegant tools to track the sources, features, and environmental behaviors of NOM. In this work, the most recent advances in molecular spectroscopic techniques, including UV-Vis, fluorescence, infrared, and Raman spectroscopy, for the characterization, measurement, and monitoring of NOM are reviewed, and the state-of-the-art innovations are highlighted. Furthermore, the limitations of current spectroscopic approaches for the exploration of NOM-related environmental processesand how these weaknesses/drawbacks can be addressed are explored. Finally, suggestions and directions are proposed to advance the development of spectroscopic methods in analyzing and elucidating the properties and behaviors of NOM in natural and engineered environments.

Tryptophan-like fluorescence as a high-level screening tool for detecting microbial contamination in drinking water

Regular monitoring of drinking water quality is vital to identify contamination of potable water supplies. Testing for microbial contamination is important to prevent transmission of waterborne disease, but establishing and maintaining a water quality monitoring programme requires sustained labour, consumables and resources. In low resource settings such as developing countries, this can prove difficult, but measuring microbial contamination is listed as a requirement of reaching the UN's Sustainable Development Goal 6 for water and sanitation. A nine-month water quality monitoring programme was conducted in rural Malawi to assess the suitability of tryptophan-like fluorescence (TLF), an emerging method for rapidly detecting microbial contamination, as a drinking water quality monitoring tool. TLF data was compared with thermotolerant coliforms (TTCs, E. coli) and inorganic hydrochemical parameters. A large (n = 235) temporal dataset was collected from five groundwater drinking water sources, with samples collected once or twice weekly depending on the season. The results show that TLF can indicate a broader contamination risk but is not as sensitive to short term variability when compared to other faecal indicators. This is likely due to a broad association of TLF with elevated DOC concentrations from a range of different sources. Elevated TLF may indicate preferential conditions for the persistence of TTCs and/or E. coli, but not necessarily a public health risk from microbial contamination. TLF is therefore a more precautionary risk indicator than microbial culturing techniques and could prove useful as a high-level screening tool for initial risk assessment. For widespread use of TLF to be successful, standardisation of TLF values associated with different levels of risk is required, however, this study highlights the difficulties of equating TLF thresholds to TTCs or E. coli data because of the influence of DOC/HLF on the TLF signal.

Large-scale survey of seasonal drinking water quality in Malawi using in situ tryptophan-like fluorescence and conventional water quality indicators

Faecally-contaminated drinking water is a risk to human health, with the greatest risks to those living in developing countries. UN Sustainable Development Goal 6 aims to address this issue. Tryptophan-like fluorescence (TLF) shows potential as a rapid method for detecting microbial contamination in drinking water, which could reduce the spread of waterborne diseases. This study is the first to investigate the effectiveness of TLF for a large-scale survey using a randomised, spot-sampling approach. The large-scale survey took place in Malawi, sub-Saharan Africa, in the dry season (n = 183). A subset of sources were revisited at the end of the following wet season (n = 41). The effectiveness of TLF was assessed by comparing TLF results to thermotolerant coliforms (TTC), humic-like fluorescence (HLF), inorganic hydrochemical data and sanitary risk scores. The most prominent differences in microbial water quality were observed between source types, with little variation between districts and seasons. TLF, TTCs, turbidity and sanitary risk scores were all elevated at alternative sources (shallow wells and tap stands) compared to hand-pumped boreholes. In the dry season, 18% of hand-pumped boreholes showed TTC contamination, which increase to 21% in the wet season. Groundwater recharge processes are likely responsible for seasonal variability of inorganic hydrochemistry at hand-pumped boreholes. TLF was able to distinguish no and low WHO risk classes (TTC 0-9 cfu/100 mL) from medium, high and very high risk classes (TTC 10 - >1000 cfu/100 mL). TLF failed to distinguish between no and low risk classes, which limits the use of TLF for assessing water quality to drinking water standards. This dataset indicates that HLF may raise baseline TLF for samples with low TLF values, increasing false positives. Therefore, TLF is better suited as a rapid high-level water quality screening tool to assess moderate and high levels of faecal contamination.

In-situ fluorescence spectroscopy indicates total bacterial abundance and dissolved organic carbon

We explore in-situ fluorescence spectroscopy as an instantaneous indicator of total bacterial abundance and faecal contamination in drinking water. Eighty-four samples were collected outside of the recharge season from groundwater-derived water sources in Dakar, Senegal. Samples were analysed for tryptophan-like (TLF) and humic-like (HLF) fluorescence in-situ, total bacterial cells by flow cytometry, and potential indicators of faecal contamination such as thermotolerant coliforms (TTCs), nitrate, and in a subset of 22 samples, dissolved organic carbon (DOC). Significant single-predictor linear regression models demonstrated that total bacterial cells were the most effective predictor of TLF, followed by on-site sanitation density; TTCs were not a significant predictor. An optimum multiple-predictor model of TLF incorporated total bacterial cells, nitrate, nitrite, on-site sanitation density, and sulphate (r² 0.68). HLF was similarly related to the same parameters as TLF, with total bacterial cells being the best correlated (ρ_s 0.64). In the subset of 22 sources, DOC clustered with TLF, HLF, and total bacterial cells, and a linear regression model demonstrated HLF was the best predictor of DOC (r² 0.84). The intergranular nature of the aquifer, timing of the study, and/or non-uniqueness of the signal to TTCs can explain the significant associations between TLF/HLF and indicators of faecal contamination such as on-site sanitation density and nutrients but not TTCs. The bacterial population that relates to TLF/HLF is likely to be a subsurface community that develops in-situ based on the availability of organic matter originating from faecal sources. In-situ fluorescence spectroscopy instantly indicates a drinking water source is impacted by faecal contamination but it remains unclear how that relates specifically to microbial risk in this setting.

Tryptophan-like and humic-like fluorophores are extracellular in groundwater: implications as real-time faecal indicators

Fluorescent natural organic matter at tryptophan-like (TLF) and humic-like fluorescence (HLF) peaks is associated with the presence and enumeration of faecal indicator bacteria in groundwater. We hypothesise, however, that it is predominantly extracellular material that fluoresces at these wavelengths, not bacterial cells. We quantified total (unfiltered) and extracellular (filtered at < 0.22 µm) TLF and HLF in 140 groundwater sources across a range of urban population densities in Kenya, Malawi, Senegal, and Uganda. Where changes in fluorescence occurred following filtration they were correlated with potential controlling variables. A significant reduction in TLF following filtration (ΔTLF) was observed across the entire dataset, although the majority of the signal remained and thus considered extracellular (median 96.9%). ΔTLF was only significant in more urbanised study areas where TLF was greatest. Beneath Dakar, Senegal, ΔTLF was significantly correlated to total bacterial cells (ρs 0.51). No significant change in HLF following filtration across all data indicates these fluorophores are extracellular. Our results suggest that TLF and HLF are more mobile than faecal indicator bacteria and larger pathogens in groundwater, as the predominantly extracellular fluorophores are less prone to straining. Consequently, TLF/HLF are more precautionary indicators of microbial risks than faecal indicator bacteria in groundwater-derived drinking water.

High Anthropogenic Organic Matter Inputs during a Festival Increase River Heterotrophy and Refractory Carbon Load

Streams and rivers metabolize dissolved organic matter (DOM). Although most DOM compounds originate from natural sources, recreational use of rivers increasingly introduces chemically distinct anthropogenic DOM. So far, the ecological impact of this DOM source is not well understood. Here, we show that a large music festival held adjacent to the Traisen River in Austria increased the river's dissolved organic carbon (DOC) concentration from 1.6 to 2.1 mg L^-1 and stream ecosystem respiration from -3.2 to -4.5 mg L^-1. The DOC increase was not detected by sensors continuously logging absorbance spectra, thereby challenging their applicability for monitoring. However, the fluorescence intensity doubled during the festival. Using parallel factor analysis, we were able to assign the increase in fluorescence intensity to the chemically stable UV-B filter phenylbenzimidazole sulfonic acid, indicating organic compounds in sunscreen and other personal care products as sources of elevated DOC. This observation was confirmed by liquid chromatography coupled with mass spectrometry. The elevated respiration is probably fueled by anthropogenic DOM contained in beer and/or urine. We conclude that intense recreational use of running waters transiently increases the anthropogenic DOM load into stream ecosystems and alters the fluvial metabolism. We further propose that chemically distinct, manmade DOM extends the natural range of DOM decomposition rates in fluvial ecosystems.

Characterization of the fate and changes of post-irradiance fluorescence signal of filtered anthropogenic effluent dissolved organic matter from wastewater treatment plant in the coastal zone of Gapeau river

Anthropogenic effluent dissolved organic matter (DOM) plays an important role in coastal zone pollution. The objectives of the present study were to characterize the fluorescence signal of anthropogenic effluent DOM from wastewater treatment plant and to evaluate the effect of solar irradiation on the fluorescence signal in the coastal zone. Solar irradiation experiments were conducted to evaluate the effect photochemical degradation using excitation-emission matrix (EEM) method combined with parallel factor analysis (PARAFAC). Results showed high fluorescence of DOM before irradiation and the intensity tends to decrease after 4th and 15th day of irradiation. Rapid photochemical degradation of humic-like fluorophores and appearance of a post-irradiance dominant anthropogenic effluent DOM fluorophores were also observed after irradiation. Our experiments showed a sharp reduction in fluorescence intensity which occurred after 4th day of solar irradiation and the fluorescence signal did not disappeared after 15th day indicating the formation of a specific signal due to solar irradiation. PARAFAC model divided the bulk EEM spectra into three individual fluorescent components with C1 "terrestrial humic-like" and C2 "humic-like of longer wavelength" and C3 is a noisy component with two emission maxima. Multilinear regression of PARAFAC components contribution with mixing composition was most suitable according to the equation C*i = A^WW_i,0 + A^WW_i,1.f_SW + A^WW_i,2.f_RW, where C*_i is the normalized contribution of PARAFAC component number i in a given irradiation day; A^WW_i,0, A^WW_i,1, A^WW_i,2 are the multilinear regression coefficients and contain implicitly the effect of f_WW; and WW, SW, and RW are treated wastewater, sea water, and river water respectively. The values of A^WW_i,0, A^WW_i,1, and A^WW_i,2 fitted second-order kinetics with irradiation process with kinetic constant of 9.68, - 987.35, and - 977.67 respectively for C1 equation and the same trend for C2 and no values for C3 due to its noisy character indicating the rapid degradation with increase of f_SW and f_RW and the predominance of the residual fluorescence coming from f_WW which is the content fraction of anthropogenic effluent DOM because A^WW_i,0 was 100 times less sensitive to photobleaching. A suitable model for predicting the fluorescence EEMs as a function of mixing composition was developed.

Demonstration of Tryptophan-Like Fluorescence Sensor Concepts for Fecal Exposure Detection in Drinking Water in Remote and Resource Constrained Settings

Low-cost, field-deployable, near-time methods for assessing water quality are not available when and where waterborne infection risks are greatest. We describe the development and testing of a novel device for the measurement of tryptophan-like fluorescence (TLF), making use of recent advances in deep-ultraviolet light emitting diodes (UV-LEDs) and sensitive semiconductor photodiodes and photomultipliers. TLF is an emerging indicator of water quality that is associated with members of the coliform group of bacteria and therefore potential fecal contamination. Following the demonstration of close correlation between TLF and E. coli in model waters and proof of principle with sensitivity of 4 CFU/mL for E. coli, we further developed a two-LED flow-through configuration capable of detecting TLF levels corresponding to “high risk” fecal contamination levels (>10 CFU/100 mL). Findings to date suggest that this device represents a scalable solution for remote monitoring of drinking water supplies to identify high-risk drinking water in near-time. Such information can be immediately actionable to reduce risks.

Impact of UV radiation on DOM transformation on molecular level using FT-ICR-MS and PARAFAC

Dissolved organic matter (DOM) is an omnipresent constituent of natural water bodies. Reuse and transformation of DOM compounds in the water column is driven by physicochemical and biological processes leading to the production of refractory DOM. Typically, breakdown of DOM chemical compounds into smaller or more condensed fragments is triggered by ultraviolet (UV) radiation. Here, we present a study on the photodegradation of DOM produced during an incubation experiment with a natural microbial community. At the end of the first incubation without UV irradiation, the samples from 3 mesocosms were filtered to remove microbes and particles and continuously exposed to UV radiation (280-365 nm). We investigated DOM in depth via monitoring of dissolved organic carbon (DOC) concentrations, DOM molecular characterization by Fourier-Transform Ion Cyclotron Resonance Mass Spectrometry (FT-ICR-MS) and excitation emission matrix spectroscopy (EEMS). Analysis of variance indicated no significant differences in the DOC concentration between treatments. Main peaks in the fluorescent DOM (FDOM) were photo-bleached by UV radiation, and an increase in the fluorescent intensity of selected peaks was observed on irradiated samples toward the end of the experiment. Parallel factor analysis (PARAFAC) indicated the presence of three main components in all treatments: C1 (Marine humic M), C2 (Bacterial produced humic C), C3 (Tyrosine), and an additional component in the dark incubation of mesocosm 3, C4 (Tryptophan). Despite an intensive filtration protocol through 0.7, 0.2 and 0.1 μm filters, low bacterial abundances were determined (<2.5 × 10^-3 cells mL^-1). We observed a direct correlation between structural indices and the intensity of PARAFAC components. Average double bond equivalent and aromaticity were strongly positively correlated with PARAFAC components C1 and C2 for one or more mesocosm. Moreover, FT-ICR-MS showed that under the tested conditions, the refractory character of the DOM assessed as the similarity to a deep ocean DOM reference did not increase on molecular level. Thus, mechanisms other than photochemical transformations of relatively recent DOM are likely necessary to facilitate long-term stability of DOM in the oceans.

Detection of bacteria in burn wounds with a novel handheld autofluorescence wound imaging device: a pilot study

OBJECTIVE

To compare the detection of bacteria in burn wounds between an bacterial fluorescence imaging device MolecuLight i:X, (Canada), and standard microbiological swabs.

METHODS

Wounds were swabbed three times on one occasion; once with a standard swab, once with a high-fluorescent area swab, indicating a bacterial load >10⁴ colony-forming units (CFU)/gram and a finally with a non-fluorescent (nF) area swab. Proportion agreement of the microbiological results was calculated and the accuracy of the device to detect relevant bacteria was assessed.

RESULTS

A total of 14 patients with 20 wounds participated in the study. Median post-burn day at sampling time was 21 days. Of the 20 wounds, nine had a positive swab result in either of the three swabs, and 11 showed a highfluorescent area. Overall, positive and negative proportion agreement between standard swab and high-fluorescent swab sample results were 100%. Sensitivity, specificity, positive and negative predictive values of presence of high-fluorescence were 78%, 64%, 64%, and 78%, respectively. For Pseudomonas aeruginosa detection, these results were 100%, 70%, 44% and 100%, respectively.

CONCLUSION

The diagnostic accuracy of the bacterial fluorescence imaging device to detect relevant bacteria in burn wounds was moderate and the reliability was equal to standard swabbing. Further research in larger sample sizes and on the relevance of minimal bacterial load and its potential to help with Pseudomonas aeruginosa management is needed.

Dissolved organic matter and metabolic dynamics in dryland lowland rivers

Dissolved organic matter (DOM) within freshwaters is essential for broad ecosystem function. The concentration and type of DOM within rivers depends on the relative contributions of allochthonous sources and the production and consumption of DOM by microbes. In this work we have examined the temporal patterns in DOM quality and productivity in three lowland rivers in dryland Australia using fluorescence excitation emission scans. We assessed the production and consumption of DOM within light and dark bottle assays to quantify the relative contribution of bacteria and algae to the DOM pool and simultaneously assessed whether the systems were autotrophic or heterotrophic. DOM varied temporally within the three river systems over the course of the study period. Characterisation of DOM within light and dark bottles following a 6-hour incubation revealed microbial consumption of a humic-like component and production of protein-like components similar in nature to the amino acids tryptophan and tyrosine. The lack of a significant difference in DOM quality between the light and dark bottles indicated that the protein-like DOM is likely derived from bacterial activity. Respiration was shown to be higher than gross primary production in both whole river and bottle assays, yielding negative net production values and demonstrating that these rivers were predominately heterotrophic. Our work suggests that bacterial metabolism of DOM may be a significant contributor to the production of protein-like components within heterotrophic freshwater systems.

Quantification of bacteria in water using PLS analysis of emission spectra of fluorescence and excitation-emission matrices

Bacterial contamination of drinking water is a considerable concern for public health. Tryptophan-like fluorescence (TLF) has been widely suggested to enable fast and inexpensive monitoring and quantification of bacterial contamination of water. Typically, TLF is determined at a certain excitation (ex)/emission (em) wavelengths pair. The aim of this study was to assess fluorescence spectroscopy supported with partial least squares (PLS) algorithms as a tool for a rapid evaluation of the microbial quality of water, by comparing the use of a single ex/em wavelengths pair, of the spectrum of emission obtained at a single excitation wavelength to that of whole excitation-emission matrices (EEMs). For that, laboratory-grown Escherichia coli, Bacillus subtilis and Pseudomonas aeruginosa were studied as the model systems, as well as 90 groundwater samples from 6 different wells in Israel. The groundwater samples were characterized for fluorescence emission, coliforms, fecal coliforms, fecal streptococci and heterotrophic plate counts. The PLS analysis of emission spectra and, especially, of EEMs was capable of meaningfully reducing the detection limit of microorganisms in model systems, as compared with the single ex/em wavelengths pair-based determination commonly used, reaching a detection threshold as low as 10 CFU/ml. Use of PLS-analyzed EEMs becomes beneficial also in terms of correlation and similarity between the actual and predicted bacterial concentrations. Similarly, improved detection of bacteria was also achieved in groundwater samples. Furthermore, at a level of >10⁴ CFU/ml, use of EEMs coupled with PLS enabled discrimination between E. coli, B. subtilis and P. aeruginosa.

In situ fluorescence measurements of dissolved organic matter: A review

There is a need for an inexpensive, reliable and fast monitoring tool to detect contaminants in a short time, for quick mitigation of pollution sources and site remediation, and for characterization of natural dissolved organic matter (DOM). Fluorescence spectroscopy has proven to be an excellent technique in quantifying aquatic DOM, from autochthonous, allochthonous or anthropogenic sources. This paper reviews the advances in in situ fluorescence measurements of DOM and pollutants in various water environments. Studies have demonstrated, using high temporal-frequency DOM fluorescence data, that marine autochthonous production of DOM is highly complex and that the allochthonous input of DOM from freshwater to marine water can be predicted. Furthermore, river measurement studies found a delayed fluorescence response of DOM following precipitation compared to turbidity and discharge, with various lags, depending on season, site and input of dissolved organic carbon (DOC) concentration. In addition, research has shown that blue light fluorescence (λ_emission = 430-500 nm) can be a good proxy for DOC, in environments with terrestrial inputs, and ultraviolet fluorescence (λ_emission = UVA-320-400 nm) for biochemical oxygen demand, and also E. coli in environments with sanitation issues. The correction of raw fluorescence data improves the relationship between fluorescence intensity and these parameters. This review also presents the specific steps and parameters that must be considered before and during in situ fluorescence measurement session for a harmonized qualitative and quantitative protocol. Finally, the strengths and weaknesses of the research on in situ fluorescence are identified.

Fluorescence fingerprints of oral bacteria

The rapid detection and identification of microorganisms is one of the most important factors in many cases of ill health. The purpose of this study was to determine the fluorescence characteristics of seven oral bacteria using emission spectra with the aim of distinguishing between the bacteria, and to compare fluorescence imaging methods for the direct assessment of oral bacteria. Fluorescence images of each bacterium were obtained under a 405-nm light source using a two-filter system. The emissions of all samples were measured with a fluorescence spectrometer. The complete fluorescence data set collected for each sample employed a three-dimensional data cube. The differences in the autofluorescence characteristics of the seven oral bacteria were determined by principal components analysis (PCA). The fluorescence images of the oral bacteria varied with the genus and the filter system. The three-dimensional excitation-emission matrix fluorescence spectra exhibited distinctive fluorescence features associated with intracellular fluorophores. The seven bacteria could be clearly differentiated on the PCA score plot. The findings of this study indicate that oral bacteria can be identified based on their autofluorescence characteristics. Fluorescence spectroscopy coupled with PCA can be used to detect and classify oral bacteria.

Organochlorine pesticides and dissolved organic matter within a system of urban exorheic lakes

Urban lakes represent the most extensive water bodies in cities and provide blue ecosystem services, by retaining pollutants, offering cultural services, and mitigating climate change. Human activities threaten to decrease the supply of ecosystem services associated with urban lakes. Exorheic lakes play an essential role in reducing and changing the characteristics of pollutants and organic matter along the environmental continuum. This study aims to gain further understanding on the distribution and fate of organochlorine pesticides (OCPs) in relation to fluorescent dissolved organic matter (DOM) within an exorheic lake system, located along Colentina river, Bucharest. Results indicated a historical usage of HCHs, which were present in lake water and sediment samples, in concentrations exceeding the regulatory limits, with potential eco-toxicity on aquatic biota. Decades of intense applications along the river, before OCPs ban, led to their accumulation in sediments and their re-mobilization, each year, after the lakes were drained, dredged, and refilled. Fluorescence measurements revealed that DOM accumulated in certain lakes due to wastewater discharges, and surface runoff, but decreased towards the end of the exorheic lakes through dilution, sedimentation, and biodegradation. The results also showed that fluorescent DOM may have a substantial impact on OCPs cycle in urban lakes and may help to determine the conditions and effectiveness of removing OCPs from water and sediments. These issues contribute to the decrease of ecosystem services supply associated with urban lakes, having multiple hidden consequences on the urban environment.

Spatial variation of organochlorine pesticides and dissolved organic matter in urban closed lakes

Closed lakes located in urban parks act as sinks of organochlorine pesticides (OCPs), which have been used, for decades, as insecticides, herbicides and fungicides. The closed lakes from Bucharest, Romania, are periodically managed to prevent eutrophication and accumulation of pollutants. However, it is not known if these practices reduce or enhance the legacy pollution with OCPs. The aim of this study was to explore the spatial variation of OCPs in closed lakes. The total concentration of OCPs in water and sediments ranged between 0.0176 and 37.1 µg/L, and between 122 to 1,890 ng/g, respectively. The concentrations of OCPs were compared with the consensus-based sediment quality guidelines (SQGs) in order to evaluate the ecological risks of sediments. The highest potential adverse effects were associated with γ-HCH exposure. Periodical draining and dredging of lakes lead to the resuspension of contaminants, increasing pesticide bioavailability and accumulation in sediments. In addition, we observed that fluorescent dissolved organic matter (DOM) might influence the OCPs cycle. The quantity and character of fluorescent DOM can provide further insight into OCPs degradation. Also, this study may help urban planners to determine the state of urban waters and to find the best solution for water management.

Treatment of leachate organic matter through sunlight driven processes

Leachate organic matter (LOM) from mature, stabilized landfills is recalcitrant in nature resulting from high concentrations of humic substances, such as humic acids and other complex organic matter. This research focused on the behavior and fate of LOM in aquatic sun-lit systems to address the extent and mechanisms of LOM photodegradation by exposing leachate to natural sunlight in central Florida for a period of 90 days. Transformation processes were measured using ultraviolet-visible (UV-Vis) spectroscopy, fluorescence excitation-emission matrix spectroscopy, size-exclusion chromatography, and chemical oxygen demand over the test period. Results of the study suggest that photolytic, and in some cases biological, reactions were responsible for the reduction of LOM demonstrated by the transformation of high molecular weight recalcitrant material to lower molecular weight material, loss of fluorescence and color, and reduction of UV₂₅₄ absorbance.

Assessing the impact of environmental activities on natural organic matter in South Africa and Belgium

The presence and persistence of natural organic matter (NOM) in drinking water treatment plants (WTPs) requires a robust and rapid monitoring method. Measurement and monitoring of NOM fractions using current technology is time-consuming and expensive. This study uses fluorescence measurements in combination with Parallel Factor (ParaFac) analysis to characterize NOM fractions. This was achieved through: (1) determining the origin and composition of NOM fractions using fluorescence index (FI), humification index, biological index, and freshness index, and (2) using multivariate analysis to reveal key parameters and hidden NOM fraction characteristics influenced by seasonal changes and environmental activities. The ParaFac model revealed that the NOM fractions for Belgium plants are mainly hydrophobic acids, aromatic proteins, biological activity, humic acid-like, and fulvic acid-like moieties. The NOM fractions in South African plants were mainly aromatic protein, humic acid-like, fulvic acid-like, tryptophan-like, and protein-like moieties. For Belgium plants in spring FI >1.7, indicating high microbial sources, whereas FI < 1.3 for South African plants, signifying terrestrial sources of NOM. On the one hand, the first principal component (PC1) interpreted 33.02% of the total variance, and is a measure of fluorescent NOM relative concentration. On the other hand, the PC2 interpreted 21.47% and contains most of the information on humification, freshness, and biological indicators, while PC3 interpreted 17.74% and contains information on the origin and variation in environmental conditions. These results will assist in developing a method for online monitoring of NOM fractions in water sources based on environment activities and spectral measurements.