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Hagen WR, Louro RO. A Comparative Multi-Frequency EPR Study of Dipolar Interaction in Tetra-Heme Cytochromes. Int J Mol Sci 2023; 24:12713. [PMID: 37628894 PMCID: PMC10454114 DOI: 10.3390/ijms241612713] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/05/2023] [Revised: 08/04/2023] [Accepted: 08/09/2023] [Indexed: 08/27/2023] Open
Abstract
Distances between Fe ions in multiheme cytochromes are sufficiently short to make the intramolecular dipole-dipole interaction between hemes probable. In the analysis of EPR data from cytochromes, this interaction has thus far been ignored under the assumption that spectra are the simple sum of non-interacting components. Here, we use a recently developed low-frequency broadband EPR spectrometer to establish the extent of dipolar interaction in the example cytochromes, characterize its spectral signatures, and identify present limitations in the analysis. Broadband EPR spectra of Shewanella oneidensis MR-1 small tetraheme cytochrome (STC) have been collected over the frequency range of 0.45 to 13.11 GHz, and they have been compared to similar data from Desulfovibrio vulgaris Hildenborough cytochrome c3. The two cases are representative examples of two very different heme topologies and corresponding electron-transfer properties in tetraheme proteins. While in cytochrome c3, the six Fe-Fe distances can be sorted into two well-separated groups, those in STC are diffuse. Since the onset of dipolar interaction between Fe-Fe pairs is already observed in the X-band, the g values are determined in the simulation of the 13.11 GHz spectrum. Low-frequency spectra are analyzed with the inclusion of dipolar interaction based on available structural data on mutual distances and orientations between all hemes. In this procedure, all 24 possible assignments of individual heme spectra to heme topologies are sampled. The 24 configurations can be reduced to a few, but inspection falls short of a unique assignment, due to a remaining lack of understanding of the fine details of these complex spectra. In general, the EPR analysis suggests the four-heme system in c3 to be more rigid than that in STC, which is proposed to be related to different physiological roles in electron transfer.
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Affiliation(s)
- Wilfred R. Hagen
- Department of Biotechnology, Delft University of Technology, Building 58, Van der Maasweg 9, 2629 HZ Delft, The Netherlands
| | - Ricardo O. Louro
- Instituto de Tecnologia Química e Biológica António Xavier (ITQB-NOVA), Universidade Nova de Lisboa, 2780-157 Oeiras, Portugal
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Hagen WR. Very Low-Frequency Broadband Electron Paramagnetic Resonance Spectroscopy of Metalloproteins. J Phys Chem A 2021; 125:3208-3218. [PMID: 33848159 PMCID: PMC8154605 DOI: 10.1021/acs.jpca.1c01217] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
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A previously developed
spectrometer for broadband electron paramagnetic
resonance (EPR) spectroscopy of dilute randomly oriented systems has
been considerably modified to extend the frequency reach down to the
hundred MHz range and to boost concentration sensitivity by 1 to 2
orders of magnitude. The instrument is now suitable for the study
of biological systems in particular metalloproteins. As a proof of
concept, examples from the class of low-spin ferric hemoproteins are
studied in terms of frequency-dependent changes in their EPR spectra.
Mono-heme cytochrome c EPR is determined by g-strain
over a wide frequency range, whereas a combination of unresolved ligand
hyperfine interaction and concentration-dependent intermolecular dipolar
interaction becomes dominant at very low frequencies. In the four
heme containing cytochrome c3, g-strain
combines with intramolecular dipolar interaction over the full-studied
frequency range of 0.23–12.0 GHz. It is concluded that the
point-dipole approach is inappropriate to describe magnetic interactions
between low-spin ferric heme systems and that a body of literature
on redox interactions in multi-heme proteins will be affected by this
conclusion.
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Affiliation(s)
- Wilfred R Hagen
- Department of Biotechnology, Delft University of Technology, Van der Maasweg 9, 2629HZ Delft, The Netherlands
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3
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Homotropic and heterotropic interactions in cytochromes c
3
from sulphate reducing bacteria. FEBS Lett 2011; 586:494-503. [DOI: 10.1016/j.febslet.2011.07.007] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/30/2011] [Accepted: 07/04/2011] [Indexed: 11/23/2022]
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4
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Louro RO. Proton thrusters: overview of the structural and functional features of soluble tetrahaem cytochromes c 3. J Biol Inorg Chem 2006; 12:1-10. [PMID: 16964504 DOI: 10.1007/s00775-006-0165-y] [Citation(s) in RCA: 25] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/22/2006] [Accepted: 08/21/2006] [Indexed: 10/24/2022]
Abstract
Tetrahaem cytochromes c (3) from sulfate-reducing bacteria have revealed exquisite complexity in their ligand binding properties and they couple the cooperative binding of two electrons with the binding of protons. In this review, the molecular mechanisms for these cooperative effects are described, and the functional consequences of these cooperativities are discussed in the context of the general mechanisms of biological energy transduction and the specific physiological metabolism of Desulfovibrio.
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Affiliation(s)
- Ricardo O Louro
- Instituto de Tecnologia Química e Biológica da Universidade Nova de Lisboa, Rua da Quinta Grande 6, 2780-156, Oeiras, Portugal.
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Valente FM, Saraiva LM, LeGall J, Xavier AV, Teixeira M, Pereira IA. A membrane-bound cytochrome c3: a type II cytochrome c3 from Desulfovibrio vulgaris Hildenborough. Chembiochem 2001; 2:895-905. [PMID: 11948878 DOI: 10.1002/1439-7633(20011203)2:12<895::aid-cbic895>3.0.co;2-v] [Citation(s) in RCA: 56] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Abstract
A new tetraheme cytochrome c3 was isolated from the membranes of Desulfovibrio vulgaris Hildenborough (DvH). This cytochrome has a molecular mass of 13.4 kDa and a pI of 5.5 and contains four heme c groups with apparent reduction potentials of -170 mV, -235 mV, -260 mV and -325 mV at pH 7.6. The complete sequence of the new cytochrome, retrieved from the preliminary data of the DvH genome, shows that this cytochrome is homologous to the "acidic" cytochrome c3 from Desulfovibrio africanus (Da). A model for the structure of the DvH cytochrome was built based on the structure of the Da cytochrome. Both cytochromes share structural features that distinguish them from other cytochrome c3 proteins, such as a solvent-exposed heme 1 surrounded by an acidic surface area, and a heme 4 which lacks most of the surface lysine patch proposed to be the site of hydrogenase interaction in other cytochrome c3 proteins. Furthermore, in contrast to previously discovered cytochrome c3 proteins, the genes coding for these two cytochromes are adjacent to genes coding for two membrane-associated FeS proteins, which indicates that they may be part of membrane-bound oxidoreductase complexes. Altogether these observations suggest that the DvH and Da cytochromes are a new type of cytochrome c3 proteins (Type II: TpII-c3) with different redox partners and physiological function than the other cytochrome c3 proteins (Type I: TpI-c3). The DvH TpII-c3 is reduced at considerable rates by the two membrane-bound [NiFe] and [NiFeSe] hydrogenases, but catalytic amounts of TpI-c3 increase these rates two- and fourfold, respectively. With the periplasmic [Fe] hydrogenase TpII-c3 is reduced much slower than TpI-c3, and no catalytic effect of TpI-c3 is observed.
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Affiliation(s)
- F M Valente
- Instituto de Tecnologia Química e Biológica, Universidade Nova de Lisboa, Apt. 127, 2780-156 Oeiras, Portugal
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7
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Gayda J, Yagi T, Benosman H, Bertrand P. EPR redox study of cytochromec3fromDesulfovibrio vulgarisMiyazaki. FEBS Lett 2001. [DOI: 10.1016/0014-5793(87)81242-5] [Citation(s) in RCA: 25] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
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8
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More C, Belle V, Asso M, Fournel A, Roger G, Guigliarelli B, Bertrand P. EPR spectroscopy: a powerful technique for the structural and functional investigation of metalloproteins. BIOSPECTROSCOPY 1999; 5:S3-18. [PMID: 10512534 DOI: 10.1002/(sici)1520-6343(1999)5:5+3.0.co;2-p] [Citation(s) in RCA: 30] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
Abstract
Numerous metal centers in proteins can be prepared in a redox state in which their ground state is paramagnetic. Complementary data provided by EPR, Mössbauer, electron nuclear double resonance, magnetic circular dichroism, and NMR spectroscopies have therefore played a major role in the elucidation of the structure and function of these centers. Among those techniques the most commonly used is certainly EPR spectroscopy. In this article various aspects of the current applications of EPR to the structural and functional study of metalloproteins are presented. They are illustrated by recent studies carried out in our laboratory in the field of metalloenzymes and electron transfer systems. The power of numerical simulation techniques is emphasized throughout this work.
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Affiliation(s)
- C More
- Laboratoire de Bioénergétique et Ingénierie des Protéines, Institut de Biologie Structurale et de Microbiologie, CNRS, Marseille, France
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Kolb S, Seeliger S, Springer N, Ludwig W, Schink B. The fermenting bacterium Malonomonas rubra is phylogenetically related to sulfur-reducing bacteria and contains a c-type cytochrome similar to those of sulfur and sulfate reducers. Syst Appl Microbiol 1998; 21:340-5. [PMID: 9841124 DOI: 10.1016/s0723-2020(98)80042-8] [Citation(s) in RCA: 13] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
Abstract
Malonomonas rubra is a microaerotolerant fermenting bacterium which can maintain its energy metabolism for growth by decarboxylation of malonate to acetate. 16S rRNA sequence analysis revealed that M. rubra is closely related to the cluster of mesophilic sulfur-reducing bacteria within the delta subclass of the Proteobacteria, with the fermenting bacterium Pelobacter acidigallici and the sulfur reducers Desulfuromusa kysingii, D. bakii and D. succinoxidans as closest relatives. The cells contain high amounts (up to 12% of the total cell protein content) of a c-type cytochrome which is present mainly (> 60%) in the cytoplasm and to minor parts in the periplasm (> 20%) and associated with the membrane fraction (> 10%), independent of the growth substrate. This cytochrome is a tetraheme cytochrome of 13,700 Da molecular mass with a midpoint redox potential of -0.210 V.M. rubra does not reduce sulfur or ferric iron compounds. Since this cytochrome appears not to be involved in the energy metabolism it is concluded that it is a remnant of sulfur-reducing ancestors of this bacterium, without a conceivable physiological function in its present energy metabolism.
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Affiliation(s)
- S Kolb
- Fakultät für Biologie, Universität Konstanz, Germany
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10
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Seeliger S, Cord-Ruwisch R, Schink B. A periplasmic and extracellular c-type cytochrome of Geobacter sulfurreducens acts as a ferric iron reductase and as an electron carrier to other acceptors or to partner bacteria. J Bacteriol 1998; 180:3686-91. [PMID: 9658015 PMCID: PMC107340 DOI: 10.1128/jb.180.14.3686-3691.1998] [Citation(s) in RCA: 153] [Impact Index Per Article: 5.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/09/1998] [Accepted: 05/04/1998] [Indexed: 02/08/2023] Open
Abstract
An extracellular electron carrier excreted into the growth medium by cells of Geobacter sulfurreducens was identified as a c-type cytochrome. The cytochrome was found to be distributed in about equal amounts in the membrane fraction, the periplasmic space, and the surrounding medium during all phases of growth with acetate plus fumarate. It was isolated from periplasmic preparations and purified to homogeneity by cation-exchange chromatography, gel filtration, and hydrophobic interaction chromatography. The electrophoretically homogeneous cytochrome had a molecular mass of 9.57 +/- 0.02 kDa and exhibited in its reduced state absorption maxima at wavelengths of 552, 522, and 419 nm. The midpoint redox potential determined by redox titration was -0.167 V. With respect to molecular mass, redox properties, and molecular features, this cytochrome exhibited its highest similarity to the cytochromes c of Desulfovibrio salexigens and Desulfuromonas acetoxidans. The G. sulfurreducens cytochrome c reduced ferrihydrite (Fe(OH)3), Fe(III) nitrilotriacetic acid, Fe(III) citrate, and manganese dioxide at high rates. Elemental sulfur, anthraquinone disulfonate, and humic acids were reduced more slowly. G. sulfurreducens reduced the cytochrome with acetate as an electron donor and oxidized it with fumarate. Wolinella succinogenes was able to reduce externally provided cytochrome c of G. sulfurreducens with molecular hydrogen or formate as an electron donor and oxidized it with fumarate or nitrate as an electron acceptor. A coculture could be established in which G. sulfurreducens reduced the cytochrome with acetate, and the reduced cytochrome was reoxidized by W. succinogenes in the presence of nitrate. We conclude that this cytochrome can act as iron(III) reductase for electron transfer to insoluble iron hydroxides or to sulfur, manganese dioxide, or other oxidized compounds, and it can transfer electrons to partner bacteria.
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Affiliation(s)
- S Seeliger
- Fakultät für Biologie, Universität Konstanz, D-78457 Konstanz, Germany
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11
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Desulfoviridin, the dissimilatory sulfite reductase from Desulfovibrio desulfuricans (Essex): new structural and functional aspects of the membranous enzyme. Inorganica Chim Acta 1998. [DOI: 10.1016/s0020-1693(97)06143-4] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
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12
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Moreno C, Campos A, Teixeira M, LeGall J, Montenegro MI, Moura I, van Dijk C, Moura JG. Simulation of the electrochemical behavior of multi-redox systems. Current potential studies on multiheme cytochromes. EUROPEAN JOURNAL OF BIOCHEMISTRY 1991; 202:385-93. [PMID: 1662131 DOI: 10.1111/j.1432-1033.1991.tb16386.x] [Citation(s) in RCA: 17] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/28/2022]
Abstract
The direct unmediated electrochemical response of the tetrahemic cytochrome c3 isolated from sulfate reducers Desulfovibrio baculatus (DSM 1743) and D. vulgaris (strain Hildenborough), was evaluated using different electrode systems [graphite (edge cut), gold, semiconductor (InO2) and mercury)] and different electrochemical methods (cyclic voltammetry and differential pulse voltammetry). A computer program was developed for the theoretical simulation of a complete cyclic voltammetry curve, based on the method proposed by Nicholson and Shain [Nicholson, R.S. & Shain, I. (1964) Anal. Chem. 36, 706-723], using the Gauss-Legendre method for calculation of the integral equations. The experimental data obtained for this multi-redox center protein was deconvoluted in to the four redox components using theoretically generated cyclic voltammetry curves and the four mid-point reduction potentials determined. The pH dependence of the four reduction potentials was evaluated using the deconvolution method described.
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Affiliation(s)
- C Moreno
- Faculdade de Ciências e Tecnologia, Universidade Nova de Lisboa, Portugal
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13
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Moura JJ, Costa C, Liu MY, Moura I, LeGall J. Structural and functional approach toward a classification of the complex cytochrome c system found in sulfate-reducing bacteria. BIOCHIMICA ET BIOPHYSICA ACTA 1991; 1058:61-6. [PMID: 1646022 DOI: 10.1016/s0005-2728(05)80270-1] [Citation(s) in RCA: 24] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/28/2022]
Abstract
Following the discovery of the tetraheme cytochrome c3 in the strict anaerobic sulfate-reducing bacteria (Postgate, J.R. (1954) Biochem. J. 59, xi; Ishimoto et al. (1954) Bull. Chem. Soc. Japan 27, 564-565), a variety of c-type cytochromes (and others) have been reported, indicating that the array of heme proteins in these bacteria is complex. We are proposing here a tentative classification of sulfate- (and sulfur-) reducing bacteria cytochromes c based on: number of hemes per monomer, heme axial ligation, heme spin state and primary structures (whole or fragmentary). Different and complementary spectroscopic tools have been used to reveal the structural features of the heme sites.
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Affiliation(s)
- J J Moura
- Centro de Tecnologia Química e Biológica, Oeiras, Portugal
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14
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Hagen WR. Direct electron transfer of redox proteins at the bare glassy carbon electrode. EUROPEAN JOURNAL OF BIOCHEMISTRY 1989; 182:523-30. [PMID: 2546759 DOI: 10.1111/j.1432-1033.1989.tb14859.x] [Citation(s) in RCA: 131] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/01/2023]
Abstract
A simple system is presented for the microscale, direct voltammetry of redox proteins, typically 25 micrograms, in the absence of mediators and/or modifiers. The sample consists of a droplet of anaerobic solution laid onto an oversized disc of nitric-acid-pretreated glassy carbon as the working electrode. Very reproducible, Nernstian responses are obtained with horse heart cytochrome c. The midpoint potential Em (pH 7.0) is dependent on the ionic strength, ranging from $293 mV in 1 mM potassium phosphate to $266 mV in 0.1 M phosphate. At fixed buffer and cytochrome concentrations the magnitude of the voltammetric response is found to be independent of pH over six pH units around neutrality. It is suggested that the response of the present system is not complicated by pH-dependent properties of the electrode surface around physiological pH and, therefore, that the use of this system is practical in biochemically oriented studies. Direct, quasi-reversible responses have also been obtained at pH 7.0 (5 mM phosphate) from Desulfovibrio vulgaris. Hildenborough strain, tetraheme cytochrome c3 (pI = 10.0 at 4 C; 3 X Em = -0.32 mV, Em = -0.26 V), and cytochrome c553 (pI = 9.3; Em = +60 mV), and from Megasphaera elsdenii rubredoxin (pI congruent to 3; Em = -353 mV). The latter protein absorbs onto the glassy carbon surface, thus forming a system with possible applications in the electrochemical study of ferredoxin-linked enzymes.
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Affiliation(s)
- W R Hagen
- Department of Biochemistry, Agricultural University, Wageningen, The Netherlands
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15
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Meyer TE, Cusanovich MA. Structure, function and distribution of soluble bacterial redox proteins. BIOCHIMICA ET BIOPHYSICA ACTA 1989; 975:1-28. [PMID: 2660909 DOI: 10.1016/s0005-2728(89)80196-3] [Citation(s) in RCA: 41] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/02/2023]
Affiliation(s)
- T E Meyer
- Department of Biochemistry, University of Arizona, Tucson 85721
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Gayda JP, Benosman H, Bertrand P, More C, Asso M. EPR determination of interaction redox potentials in a multiheme cytochrome: cytochrome c3 from Desulfovibrio desulfuricans Norway. EUROPEAN JOURNAL OF BIOCHEMISTRY 1988; 177:199-206. [PMID: 2846296 DOI: 10.1111/j.1432-1033.1988.tb14362.x] [Citation(s) in RCA: 47] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/02/2023]
Abstract
In cytochromes c3 which contain four hemes per molecule, the redox properties of each heme may depend upon the redox state of the others. This effect can be described in terms of interaction redox potentials between the hemes and must be taken into account in the characterization of the redox properties of the molecule. We present here a method of measurement of these interactions based on the EPR study of the redox equilibria of the protein. The microscopic and macroscopic midpoint potentials and the interaction potentials are deduced from the analysis of the redox titration curves of the intensity and the amplitude of the EPR spectrum. This analysis includes a precise simulation of the spectrum of the protein in the oxidized state in order to determine the relative contribution of each heme to the spectral amplitude. Using our method on cytochrome c3 from D. desulfuricans Norway, we found evidence for the existence of weak interaction potentials between the hemes. The three interaction potentials which have been measured are characterized by absolute values lower than 20 mV in contrast with the values larger than 40-50 mV which have been reported for cytochrome c3 from D. gigas. Simulations of the spectra of samples poised at different potentials indicate a structural modification of the heme with the most negative potential during the first step of reduction. The correspondence between the redox sites as characterized by the EPR potentiometric titration and the hemes in the tridimensional structure is discussed.
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Affiliation(s)
- J P Gayda
- Laboratoire d'Electronique des Milieux Condensés, Unité Associé du Centre National de la Recherche Scientifique 784, Université de Provence, Marseille, France
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17
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Moura I, Teixeira M, Huynh BH, LeGall J, Moura JJ. Assignment of individual heme EPR signals of Desulfovibrio baculatus (strain 9974) tetraheme cytochrome c3. A redox equilibria study. EUROPEAN JOURNAL OF BIOCHEMISTRY 1988; 176:365-9. [PMID: 2843371 DOI: 10.1111/j.1432-1033.1988.tb14290.x] [Citation(s) in RCA: 33] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/02/2023]
Abstract
An EPR redox titration was performed on the tetraheme cytochrome c3 isolated from Desulfovibrio baculatus (strain 9974), a sulfate-reducer. Using spectral differences at different poised redox states of the protein, it was possible to individualize the EPR g-values of each of the four hemes and also to determine the mid-point redox potentials of each individual heme: heme 4 (-70 mV) at gmax = 2.93, gmed = 2.26 and gmin = 1.51; heme 3 (-280 mV) at gmax = 3.41; heme 2 (-300 mV) at gmax = 3.05, gmed = 2.24 and gmin = 1.34; and heme 1 (-355 mV) at gmx = 3.18. A previously described multi-redox equilibria model used for the interpretation of NMR data of D. gigas cytochrome c3 [Santos, H., Moura, J.J.G., Moura, I., LeGall, J. & Xavier, A. V. (1984) Eur. J. Biochem. 141, 283-296] is discussed in terms of the EPR results.
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Affiliation(s)
- I Moura
- Centro de Quimica Estrutural Complexo I, UNL, Lisboa, Portugal
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18
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Bianco P, Manjaoui A, Haladjian J, Bruschi M. Electrochemical behavior of cytochrome c3 from desulfovibrio vulgaris hildenborough. ACTA ACUST UNITED AC 1988. [DOI: 10.1016/0022-0728(88)80362-0] [Citation(s) in RCA: 19] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/17/2022]
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19
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Koller KB, Hawkridge FM, Fauque G, LeGall J. Direct electron transfer reactions of cytochrome c553 from Desulfovibrio vulgaris Hildenborough at indium oxide electrodes. Biochem Biophys Res Commun 1987; 145:619-24. [PMID: 3036137 DOI: 10.1016/0006-291x(87)91365-9] [Citation(s) in RCA: 15] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/03/2023]
Abstract
The direct, heterogeneous, electron transfer reactions of cytochrome c553 from Desulfovibrio vulgaris Hildenborough have been studied at indium oxide optically transparent electrodes. These reactions have been studied using cyclic voltammetry and derivative cyclic voltabsorptometry and the kinetics of heterogeneous electron transfer is quasi-reversible. The thermodynamics and kinetics of electron transfer by this molecule can be studied at this electrode surface without the need for surface modification or the addition of surface promoters or mediators.
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20
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Moura I, Fauque G, LeGall J, Xavier AV, Moura JJ. Characterization of the cytochrome system of a nitrogen-fixing strain of a sulfate-reducing bacterium: Desulfovibrio desulfuricans strain Berre-Eau. EUROPEAN JOURNAL OF BIOCHEMISTRY 1987; 162:547-54. [PMID: 3030740 DOI: 10.1111/j.1432-1033.1987.tb10674.x] [Citation(s) in RCA: 18] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/03/2023]
Abstract
Two c-type cytochromes were purified and characterized by electron paramagnetic resonance (EPR) and nuclear magnetic resonance (NMR) spectroscopic techniques, from the sulfate-reducer nitrogen-fixing organism, Desulfovibrio desulfuricans strain Berre-Eau (NCIB 8387). The purification procedures included several chromatographic steps on alumina, carboxymethylcellulose and gel filtration. A tetrahaem and a monohaem cytochrome were identified. The multihaem cytochrome has visible, EPR and NMR spectra with general properties similar to other low-potential bis-histidinyl axially bound haem proteins, belonging to the class of tetrahaem cytochrome c3 isolated from other Desulfovibrio species. The monohaem cytochrome c553 is ascorbate-reducible and its EPR and NMR data are characteristic of a cytochrome with methionine-histidine ligation. Their properties are compared with other homologous proteins isolated from sulfate-reducing bacteria.
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21
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Moore GR, Pettigrew GW, Rogers NK. Factors influencing redox potentials of electron transfer proteins. Proc Natl Acad Sci U S A 1986; 83:4998-9. [PMID: 3460080 PMCID: PMC323876 DOI: 10.1073/pnas.83.14.4998] [Citation(s) in RCA: 74] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/05/2023] Open
Abstract
The redox potentials of electron transfer proteins vary over a wide range, even when the type of redox center is the same. Rees [Proc. Natl. Acad. Sci. USA (1985) 82, 3082-3085] proposed that this variation of redox potential partly reflects the different net charges of the proteins, and he presented a linear correlation between these two properties for 36 proteins. A review of the factors that influence protein redox potentials makes it clear that this linear correlation is fortuitous. The key factors influencing redox potentials are the contributions to the Gibbs energy difference between the two redox states, resulting from bonding interactions at the redox center, electrostatic interactions between the redox-center charge and polar groups within the protein and solvent, and redox-state conformational changes. The relative importance of these terms is likely to vary from protein to protein.
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23
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Lu WP, Poole RK, Kelly DP. Oxidation-reduction potentials and spectral properties of some cytochromes from Thiobacillus versutus (A2). BIOCHIMICA ET BIOPHYSICA ACTA 1984; 767:326-34. [PMID: 6498181 DOI: 10.1016/0005-2728(84)90203-2] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/20/2023]
Abstract
Cytochromes c-550 (acidic), c-550 (basic), c-551 and c-552.5 from Thiobacillus versutus have been highly purified and characterized. Their spectral properties at 77 K are described. Oxidation-reduction titrations of cytochromes c-550 (acidic) and c-550 (basic) showed them to exhibit Nernst values of n = 1, with single redox centres in the cytochromes, and to have midpoint redox potentials at pH 7.0 (Em,7) of 290 and 260 mV, respectively. Cytochrome c-551 contained two separately titratable redox components, each giving n = 1. The low potential centre (55% of titratable cytochrome) and the high potential centre (45%) had Em,7 values of -115 and +240 mV, respectively. Cytochrome c-552.5 also contained at least two redox centres. One (65% of titratable cytochrome) had n = 1 and Em,7 = 220 mV. The remaining 35% appeared to be a low potential component with an Em,7 possibly as low as -215 mV. the roles of these cytochromes in respiratory thiosulphate oxidation are discussed.
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Hatchikian EC, Papavassiliou P, Bianco P, Haladjian J. Characterization of cytochrome c3 from the thermophilic sulfate reducer Thermodesulfobacterium commune. J Bacteriol 1984; 159:1040-6. [PMID: 6090384 PMCID: PMC215765 DOI: 10.1128/jb.159.3.1040-1046.1984] [Citation(s) in RCA: 18] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/18/2023] Open
Abstract
A c3 type cytochrome has been purified from the thermophilic, non-spore-forming, sulfate-reducing bacterium Thermodesulfobacterium commune. The purified protein was homogeneous as judged by sodium dodecyl sulfate-polyacrylamide gel electrophoresis, gel filtration, and isoelectric focusing. A pI of 6.83 was observed. The molecular weight of the cytochrome was estimated to be ca. 13,000 from both gel filtration and sodium dodecyl sulfate-polyacrylamide gel electrophoresis. The hemoprotein exhibited absorption maxima at 530, 408.5, and 351 nm in the oxidized form and 551.5 (alpha band), 522.5 (beta band), and 418.5 nm (gamma band) in the reduced form. The extinction coefficients of T. commune cytochrome c3 were 130,000, 74,120, and 975,000 M-1 cm-1 at 551.5, 522.5, and 418.5 nm, respectively. It contains four hemes per molecule, on the basis of both the iron estimation and the extinction coefficient value of its pyridine hemochrome. The amino acid composition showed the presence of eight cysteine residues involved in heme binding. T. commune cytochrome c3 had low threonine, serine, and glycine contents and high glutamic acid and hydrophobic residue contents. The electrochemical study of T. commune cytochrome c3 by cyclic voltammetry and differential pulse polarography has shown that the cytochrome system behaves like a reversible system. Four redox potential values at Eh1 = -0.140 +/- 0.010 V, Eh2 = Eh3 = Eh4 = -0.280 +/- 0.010 V have been determined. T. commune cytochrome c3, which acts as the physiological electron carrier of hydrogenase, is similar in most respects to the multiheme low-potential cytochrome c3 which is characteristic of the genus Desulfovibrio.
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Santos H, Moura JJ, Moura I, LeGall J, Xavier AV. NMR studies of electron transfer mechanisms in a protein with interacting redox centres: Desulfovibrio gigas cytochrome c3. EUROPEAN JOURNAL OF BIOCHEMISTRY 1984; 141:283-96. [PMID: 6329752 DOI: 10.1111/j.1432-1033.1984.tb08190.x] [Citation(s) in RCA: 133] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/19/2023]
Abstract
The proton NMR spectra of the tetrahaem cytochrome c3 from Desulfovibrio gigas were examined while varying the pH and the redox potential. The analysis of the NMR reoxidation pattern was based on a model for the electron distribution between the four haems that takes into account haem-haem redox interactions. The intramolecular electron exchange is fast on the NMR time scale (larger than 10(5) s-1). The NMR data concerning the pH dependence of the chemical shift of haem methyl resonances in different oxidation steps and resonance intensities are not compatible with a non-interacting model and can be explained assuming a redox interaction between the haems. A complete analysis at pH* = 7.2 and 9.6, shows that the haem-haem interacting potentials cover a range from -50 mV to +60 mV. The midpoint redox potentials of some of the haems, as well as some of their interacting potentials, are pH-dependent. The physiological relevance of the modulation of the haem midpoint redox potentials by both the pH and the redox potential of the solution is discussed.
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Moura I, Liu MC, LeGall J, Peck HD, Payne WJ, Xavier AV, Moura JJ. NMR studies of a dihaem cytochrome from Pseudomonas perfectomarinus (ATCC 14405). EUROPEAN JOURNAL OF BIOCHEMISTRY 1984; 141:297-303. [PMID: 6329753 DOI: 10.1111/j.1432-1033.1984.tb08191.x] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/19/2023]
Abstract
Pseudomonas perfectomarinus (ATCC 14405) dihaem cytochrome c552 was studied by 300-MHz proton magnetic resonance. Some of the haem resonances were assigned in the fully reduced and fully oxidized states. No evidence was found for methionine haem axial coordination. The oxidation-reduction equilibrium was studied in detail. Due to the large difference in mid-point redox potential between the two haems (+174 mV, for haem II and -180 mV for haem I) an intermediate oxidation state could be obtained containing reduced haem I and oxidized haem II. In this way the total paramagnetic shift at different oxidation levels could be decomposed in the intrinsic and extrinsic contributions. It was found that the two haems interact. The rate of electron exchange is slow on the NMR time scale. The redox equilibria are discussed for four possible redox species in solution.
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Niki K, Kawasaki Y, Nishimura N, Higuchi Y, Yasuoka N, Kakudo M. Electrochemical and structural studies of tera-heme proteins from desulfovibrio —standard potentials of the redox sites and heme-heme interaction. ACTA ACUST UNITED AC 1984. [DOI: 10.1016/0368-1874(84)87104-x] [Citation(s) in RCA: 16] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
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Bruschi M, Loutfi M, Bianco P, Haladjian J. Correlations studies between structural and redox properties of cytochromes C3. Biochem Biophys Res Commun 1984; 120:384-9. [PMID: 6329165 DOI: 10.1016/0006-291x(84)91265-8] [Citation(s) in RCA: 64] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/19/2023]
Abstract
Individual redox potential values are determined for different cytochromes c3. These polyhaemic cytochromes can be divided into two groups: one characterized by only one marked reduction step, the other one giving at least two well-marked reduction steps corresponding to redox potential values ranging from - 0.120 to - 0.400 V. Correlations between potential values and structural data are discussed.
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Cammack R, Fauque G, Moura J, Le Gall J. ESR studies of cytochrome c3 from Desulfovibrio desulfuricans strain Norway 4. ACTA ACUST UNITED AC 1984. [DOI: 10.1016/0167-4838(84)90174-2] [Citation(s) in RCA: 23] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
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Prince RC, Larroque C, Hooper AB. Resolution of the hemes of hydroxylamine oxidoreductase by redox potentiometry and optical spectroscopy. FEBS Lett 1983; 163:25-7. [PMID: 6628687 DOI: 10.1016/0014-5793(83)81154-5] [Citation(s) in RCA: 17] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/21/2023]
Abstract
Optical spectroscopy combined with redox potentiometry has resolved the hemes of hydroxylamine oxidoreductase into 6 thermodynamically distinct classes. There are apparently 4 classes of heme c553, with Em7-values of 295 mV, 10 mV, -190 mV and -390 mV, present in a stoichiometry of 1:1:2:1; two equivalents of heme c559, Em7 O mV, and one of heme P-460, an unusual chromophore, with Em7 -260 mV.
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Kühn W, Gottschalk G. Characterization of the cytochromes occurring in Methanosarcina species. EUROPEAN JOURNAL OF BIOCHEMISTRY 1983; 135:89-94. [PMID: 6309519 DOI: 10.1111/j.1432-1033.1983.tb07621.x] [Citation(s) in RCA: 50] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/21/2023]
Abstract
Several members of the genus Methanosarcina were investigated by room-temperature and low-temperature difference spectroscopy for the presence of cytochromes. In combination with potentiometric titrations two membrane-bound b-cytochromes and one membrane-bound c-cytochrome could be detected in cells grown on methanol or trimethylamine. Very probably acetate-grown cells contained an additional cytochrome b. The midpoint potentials of the two b-type cytochromes were Em1 = -325 mV and Em2 = -183 mV, respectively. The additional b cytochrome formed during growth on acetate exhibited a midpoint potential of Em3 = -250 mV.
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Moura JJ, Santos H, Moura I, LeGall J, Moore GR, Williams RJ, Xavier AV. NMR redox studies of Desulfovibrio vulgaris Cytochrome c3. Electron transfer mechanisms. EUROPEAN JOURNAL OF BIOCHEMISTRY 1982; 127:151-5. [PMID: 6291937 DOI: 10.1111/j.1432-1033.1982.tb06849.x] [Citation(s) in RCA: 54] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/19/2023]
Abstract
The 300-MHz proton NMR spectra of the tetrahaem cytochrome c3 from Desulfovibrio vulgaris were examined while varying the pH and the redox potential. The analysis of the complete NMR reoxidation pattern was done taking into account all the 16 redox states that can be present in the redox titration of a tetra-redox-center molecule. A network of saturation transfer experiments performed at different oxidation stages, between the fully reduced and the fully oxidized states, allowed the observation of different resonances for some of the haem methyl groups. In the present experimental conditions, some of the haems show a fast intramolecular electron exchange rate, but the intermolecular electron exchange is always slow. In intermediate reoxidation stages, large shifts of the resonances of some haem methyl groups were observed upon changing the pH. These shifts are discussed in terms of a pH dependence of the haem midpoint redox potentials. The physiological relevance of this pH dependence is discussed.
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Guerlesquin F, Bovier-Lapierre G, Bruschi M. Purification and characterization of cytochrome C3 (Mr 26,000) isolated form Desulfovibrio desulfuricans Norway strain. Biochem Biophys Res Commun 1982; 105:530-8. [PMID: 6284155 DOI: 10.1016/0006-291x(82)91467-x] [Citation(s) in RCA: 30] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/19/2023]
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The primary structure of the tetrahaem cytochrome from Desulfovibrio desulfuricans (strain norway 4). Description of a new class of low-potential cytochrome. ACTA ACUST UNITED AC 1981. [DOI: 10.1016/0005-2795(81)90137-9] [Citation(s) in RCA: 56] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
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Bianco P, Haladjian J. Current—potential responses for a tetrahemic protein: a method of determining the individual half-wave potentials of cytochrome c3 from desulfovibrio desulfuricans strain Norway. Electrochim Acta 1981. [DOI: 10.1016/0013-4686(81)85068-2] [Citation(s) in RCA: 56] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
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Blanco P, Haladjian J. 389 - Electrode reaction of cytochrome c-551.5 (c7) from Desulfuromonas acetoxidans. ACTA ACUST UNITED AC 1981. [DOI: 10.1016/0302-4598(81)80045-1] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
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Electrode reaction of cytochrome c-551.5 (c7) from Desulfuromonas acetoxidans. J Electroanal Chem (Lausanne) 1981. [DOI: 10.1016/s0022-0728(81)80209-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
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Yang SS, Ljungdahl LG, Dervartanian DV, Watt GD. Isolation and characterization of two rubredoxins from Clostridium thermoaceticum. BIOCHIMICA ET BIOPHYSICA ACTA 1980; 590:24-33. [PMID: 6243972 DOI: 10.1016/0005-2728(80)90143-7] [Citation(s) in RCA: 29] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/19/2023]
Abstract
Two rubredoxins with similar molecular weights (about 6000) have been purified from Clostridium thermoaceticum, a thermophile and strict anaerobe. They exhibit minor differences in several properties like elution pattern from DEAE-cellulose column, isoelectric point, amino acid composition, absorption and EPR spectra and redox potential. Their chemical and physical properties are similar to those of other rubredoxins from anaerobic microorganisms.
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Haser R, Pierrot M, Frey M, Payan F, Astier JP, Bruschi M, Le Gall J. Structure and sequence of the multihaem cytochrome c3. Nature 1979; 282:806-10. [PMID: 229424 DOI: 10.1038/282806a0] [Citation(s) in RCA: 141] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
Abstract
The molecular structure of cytochrome c3 isolated from Desulfovibrio desulfuricans has been solved on the basis of its crystallographic determination at 2.5 A resolution and of an essentially complete sequence. The molecule consists of a single polypeptide chain wrapped around a very compact core of four non-parallel haems which present a relatively high degree of exposure to the solvent. Alignment of the amino acid sequences of cytochrome c3 from several species suggests that the structure reported here is characteristic of the cytochrome c3 group.
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Liu CL, DerVartanian DV, Peck HD. On the redox properties of three bisulfite reductases from the sulfate-reducing bacteria. Biochem Biophys Res Commun 1979; 91:962-70. [PMID: 230837 DOI: 10.1016/0006-291x(79)91973-9] [Citation(s) in RCA: 17] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
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Xavier AV, Moura JJ, Legall J, Dervartanian DV. Oxidation-reduction potentials of the hemes in cytochrome C3 from Desulfovibrio gigas in the presence and absence of ferredoxin by EPR spectroscopy. Biochimie 1979; 61:689-95. [PMID: 227477 DOI: 10.1016/s0300-9084(79)80167-4] [Citation(s) in RCA: 31] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
Abstract
1. Ferricytochrome c3 from D. gigas exhibits two low-spin ferric heme EPR resonances with gz-values at 2.959 and 2.853. Ferrocytochrome c3 is diamagnetic based on the absence of any EPR signals. 2. EPR potentiometric titrations result in the resolution of the two low-spin ferric heme resonances into two additional heme components representing in total the four hemes of the cytochrome, with EM values of -235 mV and -315 mV at heme resonance I and EM values of -235 mV and -306 mV at heme resonance II. 3. EPR spectroscopy has detected a significant diminution of intensity (approx. 60 p. 100) in the gx amplitude of ferricytochrome c3 in the presence of D. gigas ferredoxin II. The presence of ferredoxin II also causes a more negative shift in the EM of the second components of the signals at heme resonances I and II of cytochrome C3. Both observations suggest that an interaction has occurred between cytochrome C3 and ferredoxin II. 4. The results presented suggest that the heme ligand environment of ferricytochrome c3 from D. gigas is less perturbed and/or less asymmetric than environment for ferricytochrome c3 from D. vulgaris whose EPR behavior indicates the non-equivalence of all four hemes.
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LeGall J, Payne WJ, Morgan TV, DerVartanian D. On the purification of nitrite reductase from Thiobacillus denitrificans and its reaction with nitrite under reducing conditions. Biochem Biophys Res Commun 1979; 87:355-62. [PMID: 220969 DOI: 10.1016/0006-291x(79)91804-7] [Citation(s) in RCA: 55] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
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LEGALL JEAN, DER VARTANIAN DANIELV, PECK HARRYD. Flavoproteins, Iron Proteins, and Hemoproteins as Electron-Transfer Components of the Sulfate-Reducing Bacteria. ACTA ACUST UNITED AC 1979. [DOI: 10.1016/b978-0-12-152509-5.50013-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/09/2023]
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