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For: Nobusato A, Uchiyama I, Kobayashi I. Diversity of restriction-modification gene homologues in Helicobacter pylori. Gene 2000;259:89-98. [PMID: 11163966 DOI: 10.1016/s0378-1119(00)00455-8] [Citation(s) in RCA: 64] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/19/2023]
Number Cited by Other Article(s)
1
Gao Q, Lu S, Wang Y, He L, Wang M, Jia R, Chen S, Zhu D, Liu M, Zhao X, Yang Q, Wu Y, Zhang S, Huang J, Mao S, Ou X, Sun D, Tian B, Cheng A. Bacterial DNA methyltransferase: A key to the epigenetic world with lessons learned from proteobacteria. Front Microbiol 2023;14:1129437. [PMID: 37032876 PMCID: PMC10073500 DOI: 10.3389/fmicb.2023.1129437] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/23/2022] [Accepted: 02/27/2023] [Indexed: 04/11/2023]  Open
2
Muhammad JS, Khan NA, Maciver SK, Alharbi AM, Alfahemi H, Siddiqui R. Epigenetic-Mediated Antimicrobial Resistance: Host versus Pathogen Epigenetic Alterations. Antibiotics (Basel) 2022;11:809. [PMID: 35740215 PMCID: PMC9220109 DOI: 10.3390/antibiotics11060809] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/14/2022] [Revised: 06/07/2022] [Accepted: 06/13/2022] [Indexed: 02/04/2023]  Open
3
Wilkinson DJ, Dickins B, Robinson K, Winter JA. Genomic diversity of Helicobacter pylori populations from different regions of the human stomach. Gut Microbes 2022;14:2152306. [PMID: 36469575 PMCID: PMC9728471 DOI: 10.1080/19490976.2022.2152306] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]  Open
4
Nutrient Loading and Viral Memory Drive Accumulation of Restriction Modification Systems in Bloom-Forming Cyanobacteria. mBio 2021;12:e0087321. [PMID: 34060332 PMCID: PMC8262939 DOI: 10.1128/mbio.00873-21] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/13/2023]  Open
5
Promiscuous DNA cleavage by HpyAII endonuclease is modulated by the HNH catalytic residues. Biosci Rep 2020;40:226299. [PMID: 32880391 PMCID: PMC7494987 DOI: 10.1042/bsr20201633] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/12/2020] [Revised: 08/21/2020] [Accepted: 09/02/2020] [Indexed: 11/17/2022]  Open
6
The bacterial epigenome. Nat Rev Microbiol 2019;18:7-20. [PMID: 31728064 DOI: 10.1038/s41579-019-0286-2] [Citation(s) in RCA: 145] [Impact Index Per Article: 24.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 10/04/2019] [Indexed: 12/14/2022]
7
Watanabe M, Kojima H, Umezawa K, Fukui M. Genomic Characteristics of Desulfonema ishimotonii Tokyo 01T Implying Horizontal Gene Transfer Among Phylogenetically Dispersed Filamentous Gliding Bacteria. Front Microbiol 2019;10:227. [PMID: 30837965 PMCID: PMC6390638 DOI: 10.3389/fmicb.2019.00227] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/28/2018] [Accepted: 01/28/2019] [Indexed: 11/13/2022]  Open
8
Gorrell R, Kwok T. The Helicobacter pylori Methylome: Roles in Gene Regulation and Virulence. Curr Top Microbiol Immunol 2017;400:105-127. [PMID: 28124151 DOI: 10.1007/978-3-319-50520-6_5] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/24/2022]
9
Whole genome sequence analysis indicates recent diversification of mammal-associated Campylobacter fetus and implicates a genetic factor associated with H2S production. BMC Genomics 2016;17:713. [PMID: 27599479 PMCID: PMC5013579 DOI: 10.1186/s12864-016-3058-7] [Citation(s) in RCA: 21] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/22/2016] [Accepted: 08/30/2016] [Indexed: 12/11/2022]  Open
10
Uchiyama I, Albritton J, Fukuyo M, Kojima KK, Yahara K, Kobayashi I. A Novel Approach to Helicobacter pylori Pan-Genome Analysis for Identification of Genomic Islands. PLoS One 2016;11:e0159419. [PMID: 27504980 PMCID: PMC4978471 DOI: 10.1371/journal.pone.0159419] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/11/2016] [Accepted: 07/01/2016] [Indexed: 01/03/2023]  Open
11
Pfeifer E, Hünnefeld M, Popa O, Polen T, Kohlheyer D, Baumgart M, Frunzke J. Silencing of cryptic prophages in Corynebacterium glutamicum. Nucleic Acids Res 2016;44:10117-10131. [PMID: 27492287 PMCID: PMC5137423 DOI: 10.1093/nar/gkw692] [Citation(s) in RCA: 26] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/11/2016] [Revised: 07/25/2016] [Accepted: 07/26/2016] [Indexed: 12/14/2022]  Open
12
Yahara K, Furuta Y, Morimoto S, Kikutake C, Komukai S, Matelska D, Dunin-Horkawicz S, Bujnicki JM, Uchiyama I, Kobayashi I. Genome-wide survey of codons under diversifying selection in a highly recombining bacterial species, Helicobacter pylori. DNA Res 2016;23:135-43. [PMID: 26961370 PMCID: PMC4833421 DOI: 10.1093/dnares/dsw003] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/19/2015] [Accepted: 01/23/2016] [Indexed: 01/04/2023]  Open
13
Mou KT, Muppirala UK, Severin AJ, Clark TA, Boitano M, Plummer PJ. A comparative analysis of methylome profiles of Campylobacter jejuni sheep abortion isolate and gastroenteric strains using PacBio data. Front Microbiol 2015;5:782. [PMID: 25642218 PMCID: PMC4294202 DOI: 10.3389/fmicb.2014.00782] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/09/2014] [Accepted: 12/20/2014] [Indexed: 12/13/2022]  Open
14
Oliveira PH, Touchon M, Rocha EPC. The interplay of restriction-modification systems with mobile genetic elements and their prokaryotic hosts. Nucleic Acids Res 2014;42:10618-31. [PMID: 25120263 PMCID: PMC4176335 DOI: 10.1093/nar/gku734] [Citation(s) in RCA: 219] [Impact Index Per Article: 19.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/04/2014] [Revised: 07/29/2014] [Accepted: 07/30/2014] [Indexed: 01/21/2023]  Open
15
Krebes J, Morgan RD, Bunk B, Spröer C, Luong K, Parusel R, Anton BP, König C, Josenhans C, Overmann J, Roberts RJ, Korlach J, Suerbaum S. The complex methylome of the human gastric pathogen Helicobacter pylori. Nucleic Acids Res 2013;42:2415-32. [PMID: 24302578 PMCID: PMC3936762 DOI: 10.1093/nar/gkt1201] [Citation(s) in RCA: 94] [Impact Index Per Article: 7.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]  Open
16
Maldonado-Contreras A, Mane SP, Zhang XS, Pericchi L, Alarcón T, Contreras M, Linz B, Blaser MJ, Domínguez-Bello MG. Phylogeographic evidence of cognate recognition site patterns and transformation efficiency differences in H. pylori: theory of strain dominance. BMC Microbiol 2013;13:211. [PMID: 24050390 PMCID: PMC3849833 DOI: 10.1186/1471-2180-13-211] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/20/2013] [Accepted: 08/28/2013] [Indexed: 01/22/2023]  Open
17
MacGregor BJ, Biddle JF, Teske A. Mobile elements in a single-filament orange Guaymas Basin Beggiatoa ("Candidatus Maribeggiatoa") sp. draft genome: evidence for genetic exchange with cyanobacteria. Appl Environ Microbiol 2013;79:3974-85. [PMID: 23603674 PMCID: PMC3697557 DOI: 10.1128/aem.03821-12] [Citation(s) in RCA: 22] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/11/2012] [Accepted: 04/15/2013] [Indexed: 11/20/2022]  Open
18
Vasu K, Nagaraja V. Diverse functions of restriction-modification systems in addition to cellular defense. Microbiol Mol Biol Rev 2013;77:53-72. [PMID: 23471617 PMCID: PMC3591985 DOI: 10.1128/mmbr.00044-12] [Citation(s) in RCA: 405] [Impact Index Per Article: 33.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]  Open
19
Nykyri J, Niemi O, Koskinen P, Nokso-Koivisto J, Pasanen M, Broberg M, Plyusnin I, Törönen P, Holm L, Pirhonen M, Palva ET. Revised phylogeny and novel horizontally acquired virulence determinants of the model soft rot phytopathogen Pectobacterium wasabiae SCC3193. PLoS Pathog 2012;8:e1003013. [PMID: 23133391 PMCID: PMC3486870 DOI: 10.1371/journal.ppat.1003013] [Citation(s) in RCA: 64] [Impact Index Per Article: 4.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/27/2012] [Accepted: 09/18/2012] [Indexed: 11/19/2022]  Open
20
Furuta Y, Kobayashi I. Movement of DNA sequence recognition domains between non-orthologous proteins. Nucleic Acids Res 2012;40:9218-32. [PMID: 22821560 PMCID: PMC3467074 DOI: 10.1093/nar/gks681] [Citation(s) in RCA: 27] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022]  Open
21
Natural transformation of an engineered Helicobacter pylori strain deficient in type II restriction endonucleases. J Bacteriol 2012;194:3407-16. [PMID: 22522893 DOI: 10.1128/jb.00113-12] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/21/2023]  Open
22
Chung DH, Huddleston JR, Farkas J, Westpheling J. Identification and characterization of CbeI, a novel thermostable restriction enzyme from Caldicellulosiruptor bescii DSM 6725 and a member of a new subfamily of HaeIII-like enzymes. J Ind Microbiol Biotechnol 2011;38:1867-77. [PMID: 21604181 DOI: 10.1007/s10295-011-0976-x] [Citation(s) in RCA: 32] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/27/2011] [Accepted: 04/07/2011] [Indexed: 11/27/2022]
23
Ishikawa K, Handa N, Sears L, Raleigh EA, Kobayashi I. Cleavage of a model DNA replication fork by a methyl-specific endonuclease. Nucleic Acids Res 2011;39:5489-98. [PMID: 21441537 PMCID: PMC3141261 DOI: 10.1093/nar/gkr153] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]  Open
24
Ishikawa K, Fukuda E, Kobayashi I. Conflicts targeting epigenetic systems and their resolution by cell death: novel concepts for methyl-specific and other restriction systems. DNA Res 2010;17:325-42. [PMID: 21059708 PMCID: PMC2993543 DOI: 10.1093/dnares/dsq027] [Citation(s) in RCA: 56] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]  Open
25
Chan SH, Opitz L, Higgins L, O'loane D, Xu SY. Cofactor requirement of HpyAV restriction endonuclease. PLoS One 2010;5:e9071. [PMID: 20140205 PMCID: PMC2816704 DOI: 10.1371/journal.pone.0009071] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/19/2009] [Accepted: 01/14/2010] [Indexed: 01/28/2023]  Open
26
Ferri L, Gori A, Biondi EG, Mengoni A, Bazzicalupo M. Plasmid electroporation of Sinorhizobium strains: The role of the restriction gene hsdR in type strain Rm1021. Plasmid 2010;63:128-35. [PMID: 20097223 DOI: 10.1016/j.plasmid.2010.01.001] [Citation(s) in RCA: 24] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/24/2009] [Revised: 01/13/2010] [Accepted: 01/18/2010] [Indexed: 10/19/2022]
27
Furuta Y, Abe K, Kobayashi I. Genome comparison and context analysis reveals putative mobile forms of restriction-modification systems and related rearrangements. Nucleic Acids Res 2010;38:2428-43. [PMID: 20071371 PMCID: PMC2853133 DOI: 10.1093/nar/gkp1226] [Citation(s) in RCA: 73] [Impact Index Per Article: 4.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/23/2023]  Open
28
Vale FF, Mégraud F, Vítor JMB. Geographic distribution of methyltransferases of Helicobacter pylori: evidence of human host population isolation and migration. BMC Microbiol 2009;9:193. [PMID: 19737407 PMCID: PMC2749054 DOI: 10.1186/1471-2180-9-193] [Citation(s) in RCA: 25] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/08/2009] [Accepted: 09/08/2009] [Indexed: 12/23/2022]  Open
29
Humbert O, Salama NR. The Helicobacter pylori HpyAXII restriction-modification system limits exogenous DNA uptake by targeting GTAC sites but shows asymmetric conservation of the DNA methyltransferase and restriction endonuclease components. Nucleic Acids Res 2008;36:6893-906. [PMID: 18978016 PMCID: PMC2588503 DOI: 10.1093/nar/gkn718] [Citation(s) in RCA: 43] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/11/2008] [Revised: 09/26/2008] [Accepted: 09/30/2008] [Indexed: 12/15/2022]  Open
30
Cell death upon epigenetic genome methylation: a novel function of methyl-specific deoxyribonucleases. Genome Biol 2008;9:R163. [PMID: 19025584 PMCID: PMC2614495 DOI: 10.1186/gb-2008-9-11-r163] [Citation(s) in RCA: 46] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/21/2008] [Revised: 10/16/2008] [Accepted: 11/21/2008] [Indexed: 01/10/2023]  Open
31
Ohno S, Handa N, Watanabe-Matsui M, Takahashi N, Kobayashi I. Maintenance forced by a restriction-modification system can be modulated by a region in its modification enzyme not essential for methyltransferase activity. J Bacteriol 2008;190:2039-49. [PMID: 18192396 PMCID: PMC2258900 DOI: 10.1128/jb.01319-07] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/14/2007] [Accepted: 01/02/2008] [Indexed: 11/20/2022]  Open
32
Pouillot F, Fayolle C, Carniel E. A putative DNA adenine methyltransferase is involved in Yersinia pseudotuberculosis pathogenicity. MICROBIOLOGY-SGM 2007;153:2426-2434. [PMID: 17660407 DOI: 10.1099/mic.0.2007/005736-0] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
33
Magnuson RD. Hypothetical functions of toxin-antitoxin systems. J Bacteriol 2007;189:6089-92. [PMID: 17616596 PMCID: PMC1951896 DOI: 10.1128/jb.00958-07] [Citation(s) in RCA: 207] [Impact Index Per Article: 11.5] [Reference Citation Analysis] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]  Open
34
Vale FF, Vítor JMB. Genomic methylation: a tool for typing Helicobacter pylori isolates. Appl Environ Microbiol 2007;73:4243-9. [PMID: 17483255 PMCID: PMC1932799 DOI: 10.1128/aem.00199-07] [Citation(s) in RCA: 13] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/25/2007] [Accepted: 05/01/2007] [Indexed: 01/26/2023]  Open
35
Oyarzabal OA, Rad R, Backert S. Conjugative transfer of chromosomally encoded antibiotic resistance from Helicobacter pylori to Campylobacter jejuni. J Clin Microbiol 2007;45:402-8. [PMID: 17135441 PMCID: PMC1829062 DOI: 10.1128/jcm.01456-06] [Citation(s) in RCA: 33] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/14/2006] [Revised: 09/18/2006] [Accepted: 11/15/2006] [Indexed: 01/24/2023]  Open
36
Brocchi M, Vasconcelos ATRD, Zaha A. Restriction-modification systems in Mycoplasma spp. Genet Mol Biol 2007. [DOI: 10.1590/s1415-47572007000200011] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/19/2023]  Open
37
Bayliss CD, Callaghan MJ, Moxon ER. High allelic diversity in the methyltransferase gene of a phase variable type III restriction-modification system has implications for the fitness of Haemophilus influenzae. Nucleic Acids Res 2006;34:4046-59. [PMID: 16914439 PMCID: PMC1557822 DOI: 10.1093/nar/gkl568] [Citation(s) in RCA: 38] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/13/2006] [Revised: 07/21/2006] [Accepted: 07/22/2006] [Indexed: 11/29/2022]  Open
38
Watanabe M, Yuzawa H, Handa N, Kobayashi I. Hyperthermophilic DNA methyltransferase M.PabI from the archaeon Pyrococcus abyssi. Appl Environ Microbiol 2006;72:5367-75. [PMID: 16885288 PMCID: PMC1538712 DOI: 10.1128/aem.00433-06] [Citation(s) in RCA: 22] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/22/2006] [Accepted: 05/08/2006] [Indexed: 12/31/2022]  Open
39
Zhao F, Zhang X, Liang C, Wu J, Bao Q, Qin S. Genome-wide analysis of restriction-modification system in unicellular and filamentous cyanobacteria. Physiol Genomics 2005;24:181-90. [PMID: 16368872 DOI: 10.1152/physiolgenomics.00255.2005] [Citation(s) in RCA: 34] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/02/2023]  Open
40
Backert S, Kwok T, König W. Conjugative plasmid DNA transfer in Helicobacter pylori mediated by chromosomally encoded relaxase and TraG-like proteins. MICROBIOLOGY-SGM 2005;151:3493-3503. [PMID: 16272373 DOI: 10.1099/mic.0.28250-0] [Citation(s) in RCA: 36] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/25/2022]
41
Handa N, Kobayashi I. Type III restriction is alleviated by bacteriophage (RecE) homologous recombination function but enhanced by bacterial (RecBCD) function. J Bacteriol 2005;187:7362-73. [PMID: 16237019 PMCID: PMC1272966 DOI: 10.1128/jb.187.21.7362-7373.2005] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/01/2005] [Accepted: 08/18/2005] [Indexed: 11/20/2022]  Open
42
Ichige A, Kobayashi I. Stability of EcoRI restriction-modification enzymes in vivo differentiates the EcoRI restriction-modification system from other postsegregational cell killing systems. J Bacteriol 2005;187:6612-21. [PMID: 16166522 PMCID: PMC1251573 DOI: 10.1128/jb.187.19.6612-6621.2005] [Citation(s) in RCA: 39] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/31/2005] [Accepted: 07/11/2005] [Indexed: 11/20/2022]  Open
43
Gorrell RJ, Yang J, Kusters JG, van Vliet AHM, Robins-Browne RM. Restriction of DNA encoding selectable markers decreases the transformation efficiency of Helicobacter pylori. ACTA ACUST UNITED AC 2005;44:213-9. [PMID: 15866218 DOI: 10.1016/j.femsim.2004.10.019] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/20/2004] [Revised: 10/19/2004] [Accepted: 10/20/2004] [Indexed: 11/18/2022]
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Ishikawa K, Watanabe M, Kuroita T, Uchiyama I, Bujnicki JM, Kawakami B, Tanokura M, Kobayashi I. Discovery of a novel restriction endonuclease by genome comparison and application of a wheat-germ-based cell-free translation assay: PabI (5'-GTA/C) from the hyperthermophilic archaeon Pyrococcus abyssi. Nucleic Acids Res 2005;33:e112. [PMID: 16040595 PMCID: PMC1178009 DOI: 10.1093/nar/gni113] [Citation(s) in RCA: 66] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/07/2005] [Revised: 06/18/2005] [Accepted: 06/30/2005] [Indexed: 11/22/2022]  Open
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Mruk I, Cichowicz M, Kaczorowski T. Characterization of the LlaCI methyltransferase from Lactococcus lactis subsp. cremoris W15 provides new insights into the biology of type II restriction-modification systems. MICROBIOLOGY-SGM 2004;149:3331-3341. [PMID: 14600245 DOI: 10.1099/mic.0.26562-0] [Citation(s) in RCA: 18] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
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Sibley MH, Raleigh EA. Cassette-like variation of restriction enzyme genes in Escherichia coli C and relatives. Nucleic Acids Res 2004;32:522-34. [PMID: 14744977 PMCID: PMC373321 DOI: 10.1093/nar/gkh194] [Citation(s) in RCA: 41] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/29/2003] [Revised: 12/08/2003] [Accepted: 12/08/2003] [Indexed: 11/13/2022]  Open
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Restriction-Modification Systems as Minimal Forms of Life. RESTRICTION ENDONUCLEASES 2004. [DOI: 10.1007/978-3-642-18851-0_2] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/10/2023]
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Molecular Phylogenetics of Restriction Endonucleases. ACTA ACUST UNITED AC 2004. [DOI: 10.1007/978-3-642-18851-0_3] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/24/2023]
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Han FC, Ng HC, Ho B. Stability of randomly amplified polymorphic DNA fingerprinting in genotyping clinical isolates of Helicobacter pylori. World J Gastroenterol 2003;9:2021-4. [PMID: 12970898 PMCID: PMC4656666 DOI: 10.3748/wjg.v9.i9.2021] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]  Open
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Han FC, Gong M, Ng HC, Ho B. Identification of H. pylori strain specific DNA sequences between two clinical isolates from NUD and gastric ulcer by SSH. World J Gastroenterol 2003;9:1747-51. [PMID: 12918113 PMCID: PMC4611536 DOI: 10.3748/wjg.v9.i8.1747] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]  Open
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