Ecological Linkages between a Biofilm Ecosystem and Reactor Performance: The Specificity of Biofilm Development Phases

Biodegradable polylactic acid plastic can aid to achieve partial nitrification/denitrification for low carbon to nitrogen ratio wastewater treatment: Performance and microbial mechanism

The partial nitrification/denitrification (PND) process is a green biotechnology for nitrogen removal in low carbon to nitrogen ratio wastewater, however, inhibiting nitrite-oxidizing bacteria (NOB) remains a challenge. This study uncovered that polylactic acid (PLA) can eliminate NOB and regulate the structure and function of nitrogen-transforming bacteria (NTB). An anoxic/aerobic membrane bioreactor with PLA achieved a total nitrogen removal efficiency of 64.8%, much higher than the 32.4% without PLA. Nitrite accumulation during nitrification stage reached 66.7% with PLA addition. Ammonia-oxidizing bacteria were transiently inhibited by PLA but recovered quickly. NOB were maintained at low levels due to the absence of genes for protein and DNA repair, while denitrifiers lacking NarGHI/NapAB genes were enriched. OLB8, with a relative abundance of 13.7%, played a central role in regulating NTB interaction and facilitating PND. In summary, this study provided a new strategy for improving nitrogen removal from wastewater through the reuse of PLA plastics.

Recruiting high-efficiency denitrifying consortia using Pseudomonas aeruginosa

Synthesizing the microbial community with a high denitrifying capacity is the key for achieving efficient removal of nitrogen species in wastewater treatment plants. Here, we integrated the evolutionary top-down enrichment and bottom-up bioaugmentation to construct a high-efficiency Pseudomonas-recruited denitrifying consortium (PRDC). A PRDC with a high specific denitrification rate of 109.49 ± 10.58 mg N/(g MLVSS·h) was enriched after 181 days of microbiota construction with pre-inoculation of Pseudomonas strain onto carriers. The 16S rRNA gene sequencing analysis suggested that the pre-inoculated Pseudomonas was quickly washed out and replaced by dominant denitrifying genera, such as Halomonas and Thauera, under different hydraulic retention times (HRTs). The pre-inoculated Pseudomonas can facilitate PRDC by providing public goods, but compromising its nutrient requirements. The dominant community assembly processes switched from homogeneous selection to ecological drift and dispersal limitation under shortened HRT. Furthermore, a shortened HRT facilitated the colonization of new immigrants and intensified their competition with the pre-existing dominant denitrifiers. The PRDC carriers achieved a 1.65-fold enhancement in sludge denitrification and reduced the corresponding chemical oxygen demand consumption at a carrier filling ratio of 30%. Overall, our study developed a novel technique using Pseudomonas aeruginosa as a trigger to enrich high-efficiency denitrifying consortia for wastewater treatment.

Integrating network and in-silico simulation insights into the ecological interactions shaped by carbon sources in partial denitrification and anammox system

The underlying ecological mechanism of microbial communities shaped by carbon source in partial denitrification and anammox (PDA) systems remains poorly understood, despite the potential of multiple carbon sources to support the partial denitrification process. Herein, the integrated network and in-silico simulation methods were used to evaluate the considerable impact of carbon sources on the dynamics of ecological interactions. The fluctuation of carbon source (from acetate to glucose and ethanol) significantly destabilized the performance of PDA system (total nitrogen removal efficiency decreased from 96.8% to 69.1%). Glucose simultaneously altered the composition of denitrifying bacteria, resulting in a significant enrichment of the genus Elstera (from 0% to 12.7%). By contrast, genus Thauera re-dominated for partial denitrification with ethanol as carbon source. Importantly, heterotrophic bacteria (e.g., genus Calditrichia) gradually enriched by utilizing ethanol. The presence of acetate in phase IV further enhanced the competitive advantage of heterotrophic bacteria over denitrifying bacteria, thereby resulting in the deteriorated performance of the PDA system. The in-silico simulation of co-culture further revealed that the overgrowth of auxotrophic species Calditrichia utilized amounts of nutrients and limited other functional bacteria. Additionally, the whole co-occurrence network indicated that positive interactions likely improved the adaptability of anammox bacteria under the unsteady conditions. This study provides profound insights into the ecological interactions shaped by carbon sources in PDA systems and underscores the necessity of comprehensive review of the external carbon source to ensure optimal performance.

Deciphering membrane biofouling induced by micro-/nano-plastics in nanofiltration: Metagenomic insights and spacer-driven mitigations

Nanofiltration (NF) is an effective process for micro-/nano-plastics (MNPs) interception, but the impact of accumulated MNPs on the microbial community structure and metabolic pathways of biofilms on NF membranes remains unclear. This provides uncertainty with respect to membrane biofouling behavior and the risks to efficient NF operations. In this study, the size-dependent (20 nm-25 μm) and concentration-dependent (0.1-50 mg·L-1) effects of MNPs on the biofouling of a NF membrane treating secondary wastewater effluent were studied. Three MNPs-tolerant, hypermetabolic and polystyrene-degradable genera (i.e., Acinetobacter, Novosphingobium and Asticcacaulis) were detected in biofilms as dominant taxonomic compositions. MNPs led to an increase of 19.3 %-76.7 % in biomass contents and a more rapid decrease in permeate flux, with 0.1 mg·L-1 of 80 nm NPs causing the most severe membrane biofouling. Metagenomic analysis revealed that MNPs upregulated enzymes involved in exopolysaccharide (ExoA/L/M/P/Q/X/Y/Z) and tyrosine (COMT, FeaB and AOC3) biosynthesis and quorum sensing (PhzF and CiaH/R), and suppressed cell motility pathways including flagellar assembly and bacterial chemotaxis. Novel types of perforated column spacer (PCS) enhanced the hydrodynamics of the membrane feed with a lower pressure drop and higher fluid velocity, introduced micro-jets and greater mass transfer inside feed channels, thus eliminating the deposition of MNPs and mitigating membrane biofouling. Overall, a greater understanding of the interaction mechanisms between MNPs and membrane biofouling in secondary effluent filtration will help develop more effective MNPs management strategies and achieve more sustainable NF operations.

Heterotrophic nitrification-aerobic denitrification strains: An overlooked microbial interaction nexus in the anaerobic-swing-anoxic-oxic (ASAO) plug-flow system

This study aims to clarify the overlooked functions of heterotrophic nitrification-aerobic denitrification (HNAD) bacteria in a novel anaerobic-swing-anoxic-oxic (ASAO) continuous plug-flow system. The dissolved oxygen (DO) levels and aerated hydraulic retention time (HRT) varied in the swing zones, providing a more diverse redox environment. High nitrogen (85.0 %) and phosphorus (80.0 %) removal were achieved by enriched HNAD bacteria (e.g., Thauera and Malikia) and phosphate accumulating organisms (PAO, e.g., Rhodocyclus and Azonexus) under middle DO level (1.0-2.0 mg/L) and longer aerated HRT (5.0 h). More importantly, microbial network revealed that HNAD bacteria became a connection point for other functional microorganisms associated with pollutant metabolism, and promoted the cooperation and functional evolution of microbial communities. The microbial ecology analysis captured the high importance of homogeneous selection, diffusion restriction, and drift for microbial community assembly in the ASAO system. Among them, HNAD bacteria contributed to both deterministic and stochastic processes, whereas the community assembly of PAO was mainly affected by the deterministic processes. The upregulation of denitrification genes (i.e., napA, napB, nirS, norB and norC) further confirmed the nitrogen removal contribution of aerobic denitrification by HNAD bacteria. Through this study, a comprehensive analysis of microbial interactions in the ASAO system was achieved, providing valuable insights into the targeted regulation of functional microorganisms in wastewater biological treatment processes.

Community assembly and succession of the functional membrane biofilm in the anammox dynamic membrane bioreactor: Deterministic assembly of anammox bacteria

The anammox dynamic membrane bioreactor (DMBR) exhibits potential for efficient nitrogen removal via anammox processes. The functional membrane biofilm in the anammox DMBR significantly enhances nitrogen removal, ensuring robust operation. Nevertheless, ecological mechanisms underpinning the nitrogen removal function of the membrane biofilm remain unclear. We investigated the community succession and assembly of the membrane biofilm communities in two anammox DMBRs utilizing distinct inoculated anammox sludges. Anammox bacteria displayed niche differentiation in both DMBRs. Anammox bacteria Candidatus Kuenenia was selectively enriched to 8.5% abundance in the membrane biofilm communities, contributing to 5.2-7.2% of the nitrogen removal load. Membrane biofilm communities were primarily assembled through deterministic processes. Specifically, the selective enrichment of Candidatus Kuenenia on the membrane biofilms was primarily governed by homogenous selection process, explaining 9.67-9.82% of the variance. The deterministic assemblies of anammox bacteria were mainly influenced by the high substrate affinity of Candidatus Kuenenia and the limited availability of substrates (NH4+ and NO2-) in the membrane biofilms. Furthermore, the relatively weak permeate drag force during the DMBR filtration facilitated the preferential colonization of microbes from the anammox sludge to the membrane biofilm, resulting in the deterministic formation of the membrane biofilm communities with nitrogen removal function. Our findings offer insights into the ecological mechanisms driving the deterministic assembly of the functional membrane biofilm communities in the anammox DMBRs, informing the precise regulation of membrane biofilms for improved nitrogen removal in anammox applications of wastewater treatment.

Trade-off between electrochemical and microbial nutrient eliminations in iron anode-assisted constructed wetlands: The specificity of voltage level

Holistic understanding of electrocatalytic behaviors and microbiological mechanisms respond to voltage level (VL) benefits constructing performance-pathway-community linkages in iron anode-assisted constructed wetlands (IACWs). Herein, five solar-driven IACWs at 0, 1, 5, 10, and 15 V were established to treat secondary effluent for 109 days across moderate to low water temperatures (WTs). Results showed that total nitrogen (TN) (4.87-54.42%) and total phosphorus (TP) (20.66-97.35%) removals both ascended as VL raised, which primarily occurred in the cathodic regions and anodic upstream, respectively. More sustainable nitrogen elimination was achieved at lower VLs (≤ 5 V). Electrochemical contribution quantification revealed that electrochemical denitrogenation strengthened as VL improved (144.3-965.7 mg m-2 d-1), whereas severe anodic hardening and cathodic clogging in later operation impaired the dominant electrochemical denitrification at higher VLs (≥ 10 V). In contrast, microbial denitrogenation followed hump-shaped variational pattern with rising VL (peaked at 5 V). Microbial community and function analyses further clarified that despite VL elevation induced denitrifying microbiota evolution and up-regulated functional gene abundance, microbial denitrification function was significantly constrained at higher VLs. Particularly, the highest network complexity (at 1 V) and modularity (at 5 V) bred IACWs to better withstand low WT and high iron concentration. Overall, 5 V balanced electrochemical and microbial denitrogenation to obtain persistently effective TN removal. Additionally, intensified electro-coagulation dephosphorization was verified to remove most TP via adsorption and co-precipitation. This work provided a preferred VL regulation strategy to facilitate in situ sustainable nutrient purification of low-polluted wastewater in IACWs.

Functional characteristics and mechanisms of microbial community succession and assembly in a long-term moving bed biofilm reactor treating real municipal wastewater

Moving bed biofilm reactor (MBBR) technology with diverse merits is efficient in treating various waste streams whereas their microbial functional properties and ecology still need in-depth investigation, especially in real wastewater treatment systems. Herein, a well-controlled MBBR treating municipal wastewater was established to investigate the long-term system performance and the underlying principles of community succession and assembly. The system successfully achieved ammonium, TN, and chemical oxygen demand (COD) removal of 96.7 ± 2.2%, 75.2 ± 3.6%, and 90.3 ± 3.8%, respectively, under simplified operation and low energy consumption. The effluent TN concentrations achieved 6.2 ± 1.6 mg-N/L despite the influent fluctuations. Diverse functional denitrifiers, such as Denitratisoma, Thermomonas, and Flavobacterium, and the anammox bacteria Candidatus Brocadia successfully enriched in anoxic chamber biofilms. The nitrifiers Nitrosomonas (∼0.73%) and Nitrospira (∼14.0%) exhibited appreciable nitrification capacity in specialized aerobic chambers. Ecological null model and network analysis revealed that microbial community assembly was mainly regulated by niche-based deterministic processes and air diffusion in the aerobic chamber resulted in more intense and complex bacterial interactions. Environmental filters including influent substrate and operating conditions (e.g., reactor configuration, DO, and temperature) greatly shaped the microbial community structure and affected carbon and nitrogen metabolism. The positive ecological roles of influent microflora and functional redundancy in biofilm communities were believed to facilitate functional stability. The anammox process coupled with partial denitrification in a specialized chamber demonstrated positive application implications. These findings provided valuable perspectives in deciphering the microbiological and ecological mechanisms, functional properties, and application potentials of MBBR.

Acyl-Homoserine Lactone Enhances the Resistance of Anammox Consortia under Heavy Metal Stress: Quorum Sensing Regulatory Mechanism

Anaerobic ammonium oxidation (anammox) represents an energy-efficient process for the removal of biological nitrogen from ammonium-rich wastewater. However, the susceptibility of anammox bacteria to coexisting heavy metals considerably restricts their use in engineering practices. Here, we report that acyl-homoserine lactone (AHL), a signaling molecule that mediates quorum sensing (QS), significantly enhances the nitrogen removal rate by 24% under Cu2+ stress. A suite of macro-/microanalytical and bioinformatic analyses was exploited to unravel the underlying mechanisms of AHL-induced Cu2+ resistance. Macro-/microanalytical evidence indicated that AHL regulations on the production, spatial distribution, and functional groups of extracellular polymeric substances were not significant, ruling out extracellular partitioning and complexation as a principal mechanism. Meanwhile, molecular biological evidence showed that AHL upregulated the transcriptional levels of resistance genes (sod, kat, cysQ, and czcC responsible for antioxidation defense, Cu2+ sequestration, and transport) to appreciable extents, indicating intracellular resistance as the primary mechanism. This study yielded a mechanistic understanding of the regulatory roles of AHL in extracellular and intracellular resistance of anammox consortia, providing a fundamental basis for utilizing QS regulation for efficient nitrogen removal in wastewaters with heavy metal stress.

Deciphering the dead zone on anammox system in biofilters

In an anammox biofilm reactor, long-term operation inevitably leads to the repeated formation of localized dead zones. Once these dead zones (DZs) occur, the anammox reactor's nitrogen removal efficiency is severely reduced. However, the mechanisms and intrinsic reasons for the transformation of DZs remain unexplored. In this study, the pilot-scale biofilters were classified into biologically active zones (BZs), transition zones (TZs), and DZs. The results indicated that microbial communities undergo accelerated succession from the TZ. Biofilms respond to environmental stress from the DZs by altering the levels of signaling molecules, triggering a series of cascading reactions. These reactions alter the abundance of genes involved in nitrogen removal, promote substance transformation, and speed up the succession of microbial communities. This study demonstrates the objectives and self-healing mechanisms of the anammox biofilm process in the presence of dead zones, which could support the long-term application of anammox technology.

Distinctive patterns of bacterial community succession in the riverine micro-plastisphere in view of biofilm development and ecological niches

Exploring plastic bacterial community succession is a crucial step in analyzing and predicting the ecological assembly processes of the plastisphere and its associated environmental impacts. However, microbial biofilm development and niche differentiation during plastic bacterial community succession have rarely scarcely considered. Here, we assessed the differences between three microplastics (MPs) and two natural polymers in terms of biofilm development and niche properties during bacterial community succession, and identified a genus of MPs-degrading bacteria with strong competitive potential in the plastisphere. MPs biofilm development exhibits secondary succession characteristics, whereas natural polymer biofilms persist during the primary succession stage. During succession in plastic bacterial communities, the relationship between nutrient resources and microbial competition was reflected in a positive correlation between species competition and niche breadth, which contradicted the common belief that increased nutrient availability leads to reduced competition. Furthermore, the co-occurrence network revealed that specialists were species with greater competitive potential within the plastisphere. Additionally, the MPs-degrading Exiguobacterium genus represented a key taxon in the plastisphere. Our study provides a reliable pathway for revealing the specificity of plastic bacterial community succession from multiple perspectives and enhances the understanding of ecological assembly processes in the plastisphere.

Electric syntrophy-driven modulation of Fe0-dependent microbial denitrification

In natural or engineered anaerobic environments, iron oxidation-driven microbial denitrification plays a critical role in the water or wastewater treatment. Herein, we report a previously unidentified metallic iron (Fe0)-dependent denitrification mode driven by the electro-syntrophic interaction between electroactive microorganism and denitrifier. In a model denitrifying consortium of Shewanella oneidensis and Pseudomonas aeruginosa, we find that P. aeruginosa can accept electrons for nitrate reduction via the constructed electron transfer system of Fe0-S. oneidensis-P. aeruginosa. In the electro-syntrophic consortium, the membrane-bound CymA-OmcA-MtrC protein complexes of S. oneidensis drive the generation, transfer and consumption of electrons, thus enabling modulation of microbial metabolic activity. Specially, using Fe0 as the sole electron donor, S. oneidensis can act as a bio-engine to harvest electrons and conserve energy from Fe0 biocorrosion. Electrons released by S. oneidensis are utilized by P. aeruginosa for accomplishing microbial denitrification. Metatranscriptomics analysis demonstrated that the direct electron cross-feeding process facilitates the expression of genes encoding for denitrification enzymes, intracellular electron transfer proteins, and quorum sensing of P. aeruginosa. The Fe0-dependent electronic syntrophy in this work could provide a metabolic window for the growth of denitrifiers that is a new insight into nitrate removal or global nitrogen cycle.

Salinity-induced variations in bacterial composition and co-occurrence patterns within Salicornia-based constructed wetlands in mariculture

Constructed wetlands use vegetation and microorganisms to remove contaminants like nitrogen and phosphorus from water. For mariculture, the impact of salinity on the efficiency of wastewater treatment of wetlands is unneglectable. However, little is known about their impact on the microbiome in constructed wetlands. Here, we set four salinity levels (15, 22, 29, and 36) in Salicornia constructed wetlands, and the experiment was conducted for a period of 72 days. The 15 group exhibited the highest removal rates of nitrogen compounds and phosphate, compared to the other salinity groups, the nosZ gene exhibited significantly higher expression in the 22 group (p < 0.05), indicated that microorganisms in 22 salinity have higher denitrification abilities. The three dominant phyla identified within the microbiomes were Proteobacteria, known for their diverse metabolic capabilities; Cyanobacteria, important for photosynthesis and nitrogen fixation; and Firmicutes, which include many fermenters. The ecological network analysis revealed a 'small world' model, characterized by high interconnectivity and short path lengths between microbial species, and had higher co-occurrence (45.13%) observed in this study comparing to the Erdös-Réyni random one (32.35%). The genus Microbulbifer emerged as the sole connector taxon, pivotal for integrating different microbial communities involved in nitrogen removal. A negative correlation was observed between salinity levels and network complexity, as assessed by the number of connections and diversity of interactions within the microbial community. Collectively, these findings underscore the critical role of microbial community interactions in optimizing nitrogen removal in constructed wetlands, with potential applications in the design and management of such systems for improved wastewater treatment in mariculture.

Degradation of conjugated estrogen in visible light-driven intimately coupled photocatalysis and biodegradation system

Visible light-driven intimately coupled photocatalysis and biodegradation (VDICPB) is an efficient technology for removing recalcitrant contaminants, but the degradation pathway on 17β-estradiol 3-Sulfate (E2-3S) is still not clear. In this study, VDICPB based on N-doped TiO2 as a photocatalyst was established to investigate the removal and transformation of E2-3S in synthetic wastewater. VDICPB showed a satisfactory removal efficiency of 97.8 ± 0.4 %, which was much higher than that of independent photocatalysis (84.0 ± 2.2 %) or biodegradation system (71.4 ± 1.8 %). Steroid C/D-rings of E2-3S was broken in VDICPB since the transformation process reached terminal central pathway. Primary metabolites did not accumulate in VDICPB, resulting in a low expression of functional genes. E2-3S was mainly removed by cooperative interaction of photocatalysis and co-metabolism of biofilm. Photocatalysis led to deconjugation and microbes acted to mineralization. This study provides technical reference and theoretical support for the removal of new pollutants.

Activating Biocake Communities Retards Jumps of Transmembrane Pressure in Membrane Bioreactors

Sudden jump of transmembrane pressure (TMP) in membrane bioreactors (MBRs), associated with abrupt aggravation of membrane fouling, limits practical applications of MBRs and calls for effective mitigation strategies. While the TMP jump is generally related to the bacterial activity of biocakes, the mechanisms underlying the TMP jump remain unclear. Herein, we conducted various backwash protocols with different nutrient (e.g., nitrate and sodium acetate) loadings on fouled membranes in MBRs to reveal the critical role of bacterial activity of biocakes for the TMP jump. The filtration tests showed a lower TMP jump rate for the membrane backwashed with a nutrient solution (a mixture of 180 mg/L NaNO3 and 200 mg/L NaAc, averaged at 1.40 kPa/d) than that backwashed with tap water (averaged at 3.56 kPa/d), implying that TMP jump could be efficiently mitigated by providing sufficient nutrients to biocake bacteria. The characterization of biocakes showed that high-nutrient solution backwash considerably increased bacterial viability and activity, while considerably reducing biomolecule accumulation on membranes. The keystone taxa (e.g., g_Aeromonas and o_Chitinophagaceae) in the network of nutrient-enriched biocake communities were involved in nitrate reduction and biomolecule degradation. Ecological null model analyses revealed that the deterministic manner mainly shaped biocake communities with high-nutrient availability. Overall, this study highlights the significance of the bacterial activity of biocakes for TMP development and provides potential alternatives for controlling membrane fouling.

Ciprofloxacin affects nutrient removal in manganese ore-based constructed wetlands: Adaptive responses of macrophytes and microbes

Ciprofloxacin (CIP) has received considerable attention in recent decades due to its high ecological risk. However, little is known about the potential response of macrophytes and microbes to varying levels of CIP exposure in constructed wetlands. Therefore, lab-scale manganese ore-based tidal flow constructed wetlands (MO-TFCWs) were operated to evaluate the responses of macrophytes and microbes to CIP over the long term. The results indicated that total nitrogen removal improved from 79.93% to 87.06% as CIP rose from 0 to 4 mg L-1. The chlorophyll content and antioxidant enzyme activities in macrophytes were enhanced under CIP exposure, but plant growth was not inhibited. Importantly, CIP exposure caused a marked evolution of the substrate microbial community, with increased microbial diversity, expanded niche breadth and enhanced cooperation among the top 50 genera, compared to the control (no CIP). Co-occurrence network also indicated that microorganisms may be more inclined to co-operate than compete. The abundance of the keystone bacterium (involved in nitrogen transformation) norank_f__A0839 increased from 0.746% to 3.405%. The null model revealed drift processes (83.33%) dominated the community assembly with no CIP and 4 mg L-1 CIP. Functional predictions indicated that microbial carbon metabolism, electron transfer and ATP metabolism activities were enhanced under prolonged CIP exposure, which may contribute to nitrogen removal. This study provides valuable insights that will help achieve stable nitrogen removal from wastewater containing antibiotic in MO-TFCWs.

Salt stimulates sulfide-driven autotrophic denitrification: Microbial network and metagenomics analyses

Sulfur autotrophic denitrification (SADN) is a promising biological wastewater treatment technology for nitrogen removal, and its performance highly relies on the collective activities of the microbial community. However, the effect of salt (a prevailing characteristic of some nitrogen-containing industrial wastewaters) on the microbial community of SADN is still unclear. In this study, the response of the sulfide-SADN process to different salinities (i.e., 1.5 % salinity, 0.5 % salinity, and without salinity) as well as the involved microbial mechanisms were investigated by molecular ecological network and metagenomics analyses. Results showed that the satisfactory nitrogen removal efficiency (>97 %) was achieved in the sulfide-SADN process (S/N molar ratio of 0.88) with 1.5 % salinity. In salinity scenarios, the genus Thiobacillus significantly proliferated and was detected as the dominant sulfur-oxidizing bacteria in the sulfide-SADN system, occupying a relative abundance of 29.4 %. Network analysis further elucidated that 1.5 % salinity had enabled the microbial community to form a more densely clustered network, which intensified the interactions between microorganisms and effectively improved the nitrogen removal performance of the sulfide-SADN. Metagenomics sequencing revealed that the abundance of functional genes encoding for key enzymes involved in SADN, dissimilatory nitrate reduction to ammonium, and nitrification was up-regulated in the 1.5 % salinity scenario compared to that without salinity, stimulating the occurrence of multiple nitrogen transformation pathways. These multi-paths contributed to a robust SADN process (i.e., nitrogen removal efficiency >97 %, effluent nitrogen <2.5 mg N/L). This study deepens our understanding of the effect of salt on the SADN system at the community and functional level, and favors to advance the application of this sustainable bioprocess in saline wastewater treatment.

Microplastics shaped performance, microbial ecology and community assembly in simultaneous nitrification, denitrification and phosphorus removal process

The widespread use of microplastics (MPs) has led to an increase in their discharge to wastewater treatment plants. However, the knowledge of impact of MPs on macro-performance and micro-ecology in simultaneous nitrification, denitrification, and phosphorus removal (SNDPR) systems is limited, hampering the understanding of potential risks posed by MPs. This study firstly comprehensively investigated the performance, species interactions, and community assembly under polystyrene (PS) and polyvinyl chloride (PVC) exposure in SNDPR systems. The results showed under PS (1, 10 mg/L) and PVC (1, 10 mg/L) exposure, total nitrogen removal was reduced by 3.38-10.15 %. PS and PVC restrained the specific rates of nitrite and nitrate reduction (SNIRR, SNRR), as well as the activities of nitrite and nitrate reductase enzymes (NIR, NR). The specific ammonia oxidation rate (SAOR) and activity of ammonia oxidase enzyme (AMO) were reduced only at 10 mg/L PVC. PS and PVC enhanced the size of co-occurrence networks, niche breadth, and number of key species while decreasing microbial cooperation by 5.85-13.48 %. Heterogeneous selection dominated microbial community assembly, and PS and PVC strengthened the contribution of stochastic processes. PICRUSt prediction further revealed some important pathways were blocked by PS and PVC. Together, the reduced TN removal under PS and PVC exposure can be attributed to the inhibition of SAOR, SNRR, and SNIRR, the restrained activities of NIR, NR, and AMO, the changes in species interactions and community assembly mechanisms, and the suppression of some essential metabolic pathways. This paper offers a new perspective on comprehending the effects of MPs on SNDPR systems.

New insights into substrates shaped nutrients removal, species interactions and community assembly mechanisms in tidal flow constructed wetlands treating low carbon-to-nitrogen rural wastewater

A limited understanding of microbial interactions and community assembly mechanisms in constructed wetlands (CWs), particularly with different substrates, has hampered the establishment of ecological connections between micro-level interactions and macro-level wetland performance. In this study, CWs with distinct substrates (zeolite, CW_A; manganese ore, CW_B) were constructed to investigate the nutrient removal efficiency, microbial interactions, metabolic mechanisms, and ecological assembly for treating rural sewage with a low carbon-to-nitrogen ratio. CW_B showed higher removal of ammonia nitrogen and total nitrogen by about 1.75-6.75 % and 3.42-5.18 %, respectively, compared to CW_A. Candidatus_Competibacter (denitrifying glycogen-accumulating bacteria) was the dominant microbial genus in CW_A, whereas unclassified_f_Blastocatellaceae (involved in carbon and nitrogen transformation) dominated in CW_B. The null model revealed that stochastic processes (drift) dominated community assembly in both CWs; however, deterministic selection accounted for a higher proportion in CW_B. Compared to those in CW_A, the interactions between microbes in CW_B were more complex, with more key microbes involved in carbon, nitrogen, and phosphorus conversion; the synergistic cooperation of functional bacteria facilitated simultaneous nitrification-denitrification. Manganese ores favour biofilm formation, increase the activity of the electron transport system, and enhance ammonia oxidation and nitrate reduction. These results elucidated the ecological patterns exhibited by microbes under different substrate conditions thereby contributing to our understanding of how substrates shape distinct microcosms in CW systems. This study provides valuable insights for guiding the future construction and management of CWs.

Stochastic processes shape microbial community assembly in biofilters: Hidden role of rare taxa

Stochastic and deterministic processes are the major themes governing microbial community assembly; however, their roles in bioreactors are poorly understood. Herein, the mechanisms underlying microbial assembly and the effect of rare taxa were studied in biofilters. Phylogenetic tree analysis revealed differences in microbial communities at various stages. Null model analysis showed that stochastic processes shaped the community assembly, and deterministic processes emerged only in the inoculated activated sludge after domestication. This finding indicates the dominant role of stochastic factors (biofilm formation, accumulation, and aging). The Sloan neutral model corroborated the advantages of stochastic processes and mainly attributed these advantages to rare taxa. Cooccurrence networks revealed the importance of rare taxa, which accounted for more than 85% of the keystones. Overall, these results provide good foundations for understanding community assembly, especially the role of rare taxa, and offer theoretical support for future community design and reactor regulation.

Biogenic manganese oxides promote metal(loid) remediation by shaping microbial communities in biological aqua crust

Biological aqua crust (biogenic aqua crust-BAC) is a potentially sustainable solution for metal(loid) bioremediation in global water using solar energy. However, the key geochemical factors and underlying mechanisms shaping microbial communities in BAC remain poorly understood. The current study aimed at determining the in situ metal(loid) distribution and the key geochemical factors related to microbial community structure and metal(loid)-related genes in BAC of a representative Pb/Zn tailing pond. Here we showed that abundant metal(loid)s (e.g. Pb, As) were co-distributed with Mn/Fe-rich minerals (e.g. biogenic Mn oxide, FeOOH) in BAC. Biogenic Mn oxide (i.e. Mn) was the most dominant factor in shaping microbial community structure in BAC and source tailings. Along with the fact that keystone species (e.g. Burkholderiales, Haliscomenobacter) have the potential to promote Mn ion oxidization and particle agglomeration, as well as Mn is highly associated with metal(loid)-related genes, especially genes related to As redox (e.g. arsC, aoxA), and Cd transport (e.g. zipB), biogenic Mn oxides thus effectively enhance metal(loid) remediation by accelerating the formation of organo-mineral aggregates in biofilm-rich BAC system. Our study indicated that biogenic Mn oxides may play essential roles in facilitating in situ metal(loid) bioremediation in BAC of mine drainage.

Recirculating aquaculture system as microbial community and water quality management strategy in the larviculture of Scylla paramamosain

The structure and function of the water microbial community can change dramatically between different rearing modes. Yet investigations into the relationships between microbial community and water quality remain obscure. We provide the first evidence that rearing modes alter bacterial community and water quality in the rearing water of the mud crab (Scylla paramamosain) larvae. The juveniles in the recirculating aquaculture system (RAS) had a higher viability than those in the water exchange system (WES). RAS had the significantly lower levels of total ammonia nitrogen (TAN), NH3, NO2--N, total nitrogen (TN), total dissolved solids (TDS), and chemical oxygen demand than those of WES. The number of significantly different amplicon sequence variants between rearing modes increased as the larvae developed. NH3, TAN, TDS, NO2--N, and TN were closely related to the late alterations in water bacterial community. Both the FAPROTAX tool and quantitative PCR analysis showed enhanced nitrogen cycling functional potential of water bacterial community of RAS. Random forest analysis identified the enriched water bacteria especially heterotrophic bacteria such as Phaeodactylibacter, Tenacibaculum, and Hydrogenophaga, which were vital in removing nitrogenous compounds via simultaneous nitrification and denitrification. Notably, RAS could save 18.5 m3 of seawater relative to WES in larviculture on the scale of 2.5 m3. Together, these data indicate that RAS could function as microbial community and water quality management strategy in the larviculture of crab.

A pilot study of situ sludge fermentation-driven multiple biological nitrogen removal pathways (SFBNR): Revealing microbial synergy mechanism based on co-occurrence network analysis

The sludge fermentation-driven biological nitrogen removal (SFBNR) has garnered increasing attention due to its efficient carbon resource utilization from waste activated sludge (WAS). This study successfully extended the application of this technique to a 38 m3 reactor, facilitating a daily ultra-low carbon to nitrogen ratio (<1) wastewater treatment capacity of 16 tons and a WAS capacity of 500 L. After 185-days operation, the system demonstrated commendable performance with a denitrification efficiency (DNE) of 93.22 % and a sludge reduction efficiency (SRE) of 72.07 %. To better understand the potential mechanisms, various functional bacteria interactions were revealed by co-occurrence network analysis. The results unveiled module hubs (e.g., Anaerolineaceae, Denitratisoma, and Candidatus Brocadia) and connectors (e.g., Tuaera and Candidatus Alysiosphaera) in the network exhibited synergistic relationships facilitated by carbon metabolism and nitrogen cycling. Furthermore, the interaction between biofilm sludge (BS) and suspended sludge (SS) contributed to the in-situ enrichment of anaerobic ammonium oxidizing bacteria (AnAOB), whose abundance in BS reached 1.8 % (200-times higher than in SS) after six months, and the suspend-biofilm interface served as a hotspot for anammox activity.

Ecological mechanisms of biofilm development in the hybrid sludge-biofilm process: Implications for process start-up and optimization

The hybrid sludge-biofilm processes have been widely applied for the construction or upgradation of biological wastewater treatment process. Ecological mechanisms of biofilm development remain unclear in the hybrid ecosystem, because of the intricate interactive effects between sludge and biofilms. Herein, the establishment principles of biofilms with distinct coexisting sludge amounts were uncovered by varying sludge retention times (SRTs) from 5 to 40 days in the hybrid process. With the increasing of SRTs, biofilm biomass decreased with the increase of suspended sludge, resulting in lower biofilm proportion. As estimated by the Gompertz growth model, the increased sludge amounts (i.e., higher SRTs of 20 and 40 days) prolonged the initial colonization stage and decreased the specific development rate of biofilms when compared to lower sludge amounts with the shorter SRTs (i.e., 5 and 10 days). Null model analysis demonstrated that deterministic homogenous selection could facilitate the colonization and accumulation of biofilms with less coexisting sludge (SRT of 10 days). However, stochastic ecological drift and homogenizing dispersal dominated the colonization and accumulation stages of biofilms with more coexisting sludge (SRT of 20 days), respectively. The ecological networks reflected that positively-related taxa presented taxonomic relatedness, whereas high inconsistency of taxonomic relatedness was observed among aggregate forms or development stages as affected by varied SRTs. The high incidence of intra-taxa co-occurrence patterns suggested that taxa with similar ecological niches could be specifically selected in biofilms when being exposed with less coexisting sludge. This study uncovered ecological mechanisms of biofilm development driven by varying the SRTs of suspended sludge, which would help to propose appropriate strategies for the efficient start-up and optimization of the hybrid sludge-biofilm system.

Biotransformation of micropollutants in moving bed biofilm reactors under heterotrophic and autotrophic conditions

We investigated the transformation of four pharmaceuticals (Diclofenac, Naproxen, Ibuprofen and Carbamazepine) in a moving bed biofilm reactor subjected to different COD/N ratios in four experimental phases. The shift from medium to high range COD/N ratio (i.e., 5:1 to 100:1) intensified the competition between heterotrophs and nitrifying communities, leading to a transition from co-existence of heterotrophic and autotrophic conditions with high COD removal and nitrification rate in phase I to dominant heterotrophic conditions in phase II. At lower range COD/N ratios (i.e., 1:2 and 1:8) in phase III and IV, autotrophic conditions prevailed, resulting in increased nitrification rates and high abundance of amoA gene in the biofilm. Such shifts in the operating condition were accompanied by notable changes in the biofilm concentrations, composition and abundance of microbial populations as well as biodiversity in the biofilms, which collectively affected the degradation rates of the pharmaceuticals. We observed higher kinetic rates per unit of biofilm concentration under autotrophic conditions compared to heterotrophic conditions for all compounds except Naproxen, indicating the importance of nitrification in the transformation of such compounds. The results also revealed a positive relationship between biodiversity and biomass-normalized kinetic rates of most compounds.

Carbon source shaped microbial ecology, metabolism and performance in denitrification systems

The limited information on microbial interactions and metabolic patterns in denitrification systems, especially those fed with different carbon sources, has hindered the establishment of ecological linkages between microscale connections and macroscopic reactor performance. In this work, denitrification performance, metabolic patterns, and ecological structure were investigated in parallel well-controlled bioreactors with four representative carbon sources, i.e., methanol, glycerol, acetate, and glucose. After long-term acclimation, significant differences were observed among the four bioreactors in terms of denitrification rates, organic utilization, and heterotrophic bacterial yields. Different carbon sources induced the succession of denitrifying microbiota toward different ecological structures and exhibited distinct metabolic patterns. Methanol-fed reactors showed distinctive microbial carbon utilization pathways and a more intricate microbial interaction network, leading to significant variations in organic utilization and metabolite production compared to other carbon sources. Three keystone taxa belonging to the Verrucomicrobiota phylum, SJA-15 order and the Kineosphaera genus appeared as network hubs in the methanol, glycerol, and acetate-fed systems, playing essential roles in their ecological functions. Several highly connected species were also identified within the glucose-fed system. The close relationship between microbial metabolites, ecological structures, and system performances suggests that this complex network relationship may greatly contribute to the efficient operation of bioreactors.

Microplastics perturb nitrogen removal, microbial community and metabolism mechanism in biofilm system

Microplastics (MPs) are a significant component of global pollution and cause widespread concern, particularly in wastewater treatment plants. While understanding the impact of MPs on nutrient removal and potential metabolism in biofilm systems is limited. This work investigated the impact of polystyrene (PS) and polyethylene terephthalate (PET) on the performance of biofilm systems. The results revealed that at concentrations of 100 and 1000 μg/L, both PS and PET had almost no effect on the removal of ammonia nitrogen, phosphorus, and chemical oxygen demand, but reduced the removal of total nitrogen by 7.40-16.6%. PS and PET caused cell and membrane damage, as evidenced by increases in reactive oxygen species and lactate dehydrogenase to 136-355% and 144-207% of the control group. Besides, metagenomic analysis demonstrated both PS and PET changed the microbial structure and caused functional differences. Some important genes in nitrite oxidation (e.g. nxrA), denitrification (e.g. narB, nirABD, norB, and nosZ), and electron production process (e.g. mqo, sdh, and mdh) were restrained, meanwhile, species contribution to nitrogen-conversion genes was altered, therefore disturbing nitrogen-conversion metabolism. This work contributes to evaluating the potential risks of biofilm systems exposed to PS and PET, maintaining high nitrogen removal and system stability.

Deciphering community assembly and succession in sequencing batch moving bed biofilm reactor: Differentiation between attached and suspended communities

Elucidating community assembly and succession is crucial to understanding the ecosystem functioning. Herein, the ecological processes underpinning community assembly and succession were studied to uncover the respective ecological functions of attached biofilms and suspended biomass in a sequencing batch moving bed biofilm reactor. Compared with suspended biomass, attached biofilms presented higher relative abundances of Nitrospira (2.94 %) and Nitrosomonas (1.25 %), and contributed to 66.89 ± 11.37 % and 68.11 ± 12.72 % of nitrification and denitrification activities, respectively. The microbial source tracking result demonstrated that early formation of suspended biomass was dominated by the seeding effect of detached biofilms in the start-up period (days 0-30), while self-growth of previous suspended biomass was eventually outcompeted the seeding effect when the reactor stabilized (days 31-120). Null model and ecological network analysis further suggested distinctive ecological processes underpinning the differentiation between attached and suspended communities in the same reactor. Specifically, in the start-up period, positive interactions facilitated early formation of attached (73.84 %) and suspended communities (59.41 %), while homogenous selection (88.89 %) and homogenizing dispersal (65.71 %) governed assembly of attached and suspended communities, respectively. When the reactor stabilized, attached and suspended communities showed low composition turnover as reflected by dominant homogenizing dispersal, while they presented distinctive trends of interspecies interactions. This study sheds light on discrepant ecological processes governing community differentiation of attached biofilms and suspended biomass, which would provide ecological insights into the regulation of hybrid ecosystems.

Microbial community evolution and functional trade-offs of biofilm in odor treatment biofilters

Biofilters inoculated with activated sludge are widely used for odor control in WWTP. In this process, biofilm community evolution plays an important role in the function of reactor and is closely related to reactor performance. However, the trade-offs in biofilm community and bioreactor function during the operation are still unclear. Herein, an artificially constructed biofilter for odorous gas treatment was operated for 105 days to study the trade-offs in the biofilm community and function. Biofilm colonization was found to drive community evolution during the start-up phase (phase 1, days 0-25). Although the removal efficiency of the biofilter was unsatisfactory at this phase, the microbial genera related to quorum sensing and extracellular polymeric substance secretion led to the rapid accumulation of the biofilm (2.3 kg biomass/m³ filter bed /day). During the stable operation phase (phase 2, days 26-80), genera related to target-pollutant degradation showed increases in relative abundance, which accompanied a high removal efficiency and a stable accumulation of biofilm (1.1 kg biomass/m³ filter bed/day). At the clogging phase (phase 3, days 81-105), a sharp decline in the biofilm accumulation rate (0.5 kg biomass/m³ filter bed /day) and fluctuating removal efficiency were observed. The quorum quenching-related genera and quenching genes of signal molecules increased, and competition for resources among species drove the evolution of the community in this phase. The results of this study highlight the trade-offs in biofilm community and functions during the operation of bioreactors, which could help improve bioreactor performance from a biofilm community perspective.

Effect of Fe3+ on the nutrient removal performance and microbial community in a biofilm system

In this study, the influence of Fe3+ on N removal, microbial assembly, and species interactions in a biofilm system was determined. The results showed that maximum efficiencies of ammonia nitrogen (NH4+-N), total nitrogen (TN), phosphorus (P), and chemical oxygen demand (COD) removal were achieved using 10 mg/L Fe3+, reaching values of 100, 78.85, 100, and 95.8%, respectively, whereas at concentrations of 15 and 30 mg/L Fe3+ suppressed the removal of NH4+-N, TN, and COD. In terms of absolute abundance, the expression of bacterial amoA, narG, nirK, and napA was maximal in the presence of 10 mg/L Fe3+ (9.18 × 105, 8.58 × 108, 1.09 × 108, and 1.07 × 109 copies/g dry weight, respectively). Irrespective of Fe3+ concentrations, the P removal efficiency remained at almost 100%. Candidatus_Competibacter (10.26–23.32%) was identified as the most abundant bacterial genus within the system. Determinism (50%) and stochasticity (50%) contributed equally to microbial community assembly. Co-occurrence network analysis revealed that in the presence of Fe3+, 60.94% of OTUs in the biofilm system exhibited positive interactions, whereas 39.06% exhibited negative interactions. Within the OTU-based co-occurrence network, fourteen species were identified as key microbes. The stability of the system was found to be predominantly shaped by microbial cooperation, complemented by competition for resources or niche incompatibility. The results of this study suggested that during chemical P removal in wastewater treatment plants using biofilm methods, the concentration of supplemental Fe3+ should be maintained at 10 mg/L, which would not only contribute to P elimination, but also enhance N and COD removal.

Electrostimulation triggers an increase in cross-niche microbial associations toward enhancing organic nitrogen wastewater treatment

As an efficient wastewater pretreatment biotechnology, electrostimulated hydrolysis acidification (eHA) has been used to accelerate the removal of refractory pollutants, which is closely related to the effects of electrostimulation on microbial interspecies associations. However, the ecological processes underpinning such linkages remain unresolved, especially for the microbial communities derived from different niches, such as the electrode surface and plankton. Herein, the principles of cross-niche microbial associations and community assembly were investigated using molecular ecological network and phylogenetic bin-based null model analysis (iCAMP) based on 16S rRNA gene sequences. The electrostimulated planktonic sludge and electrode biofilm displayed significantly (P < 0.05) 1.67 and 1.53 times higher organic nitrogen pollutant (azo dye Alizarin Yellow R) degradation efficiency than non-electrostimulation group, and the corresponding microbial community composition and structure were significantly (P < 0.05) changed. Electroactive bacteria and functional degraders were enriched in the electrode biofilm and planktonic sludge, respectively. Notably, electrostimulation strengthened the synergistic microbial associations (1.8 times more links) between sludge and biofilm members. Additionally, both electrostimulation and cross-niche microbial associations induced greater importance of deterministic assembly. Overall, this study highlights the specificity of cross-electrode surface microbial associations and ecological processes with electrostimulation and advances our understanding of the manipulation of sludge microbiomes in engineered wastewater treatment systems.

Biofilm characteristics for providing resilient denitrification in a hydrogen-based membrane biofilm reactor

In a hydrogen-based membrane biofilm reactor (H₂-MBfR), the biofilm thickness is considered to be one of the most important factors for denitrification. Thick biofilms in MBfRs are known for low removal fluxes owing to their resistance to substrate transport. In this study, the H₂-MBfR was operated under various loading rates of oxyanions, such as NO₃-N, SO₄-S, and ClO₄^- at an H₂ flux of 1.06 e^- eq/m²-d. The experiment was initiated with NO₃-N, SO₄-S, and ClO₄^- loadings of 0.464, 0.026, and 0.211 e^- eq/m²-d, respectively, at 20 °C. Under the most stressful conditions, the loading rates increased simultaneously to 1.911, 0.869, and 0.108 e^- eq/m²-d, respectively, at 10 °C. We observed improved performance in significantly thicker biofilms (approximately 2.7 cm) compared to previous studies using a denitrifying H₂-MBfR for 120 days. Shock oxyanion loadings led to a decrease in total nitrogen (TN) removal by 20 to 30%, but TN removal returned to 100% within a few days. Similarly, complete denitrification was observed, even at 10 °C. The protective function and microbial diversity of the thick biofilm may allow stable denitrification despite stress-imposing conditions. In the microbial community analysis, heterotrophs were dominant and acetogens accounted for 11% of the biofilm. Metagenomic results showed a high abundance of functional genes involved in organic carbon metabolism and homoacetogenesis. Owing to the presence of organic compounds produced by acetogens and autotrophs, heterotrophic denitrification may occur simultaneously with autotrophic denitrification. As a result, the total removal flux of oxyanions (1.84 e^- eq/m²-d) far exceeded the H₂ flux (1.06 e^- eq/m²-d). Thus, the large accumulation of biofilms could contribute to good resilience and enhanced removal fluxes.

Spatio-temporal succession of microbial communities in plastisphere and their potentials for plastic degradation in freshwater ecosystems

Plastics in the environment provide a new and unique habitat for microorganisms - known as the plastisphere. The microbial succession within the plastisphere and their potentials for plastic degradation in freshwater ecosystems is still not clear. Here, we investigated variation of microbial communities in plastisphere and their capacity to biodegrade non-biodegradable plastics (non-BPs), i.e., polypropylene (PP) and polyethylene (PE), and biodegradable plastics (BPs), i.e., polylactic acid+polybutylene adipate-co-terephthalate (PLA+PBAT) for four-time periods (15, 30, 45, and 80 days) in three freshwaters. Results showed that the aging degree of plastics increased with succession of plastisphere, with higher degradation rates of BP blends than those of non-BPs. High-throughput sequencing from 112 biofilm samples revealed that bacterial and fungal community structure of the plastisphere were potentially affected by plastic types and gradually converge during biofilm succession. The plastisphere of BPs reached the mature phase more quickly than those of non-BPs and increased co-exclusion to complete for resources. Furthermore, ecological networks involving plastic aging indices, environmental factors and bacterial and fungal operational taxonomic units were established. Ecological networks revealed that BPs may pose the ability to attract and retain key microorganisms (of the orders Bacillales, Myxococcales and Xanthomonadales) that significantly influence community composition such that biodegradative functions were increased in freshwaters.

Biochar combined with Bacillus subtilis SL-44 as an eco-friendly strategy to improve soil fertility, reduce Fusarium wilt, and promote radish growth

Bacillus subtilis as microbial fertilizers contribute to avoiding the harmful effects of traditional agricultural fertilizers and pesticides. However, there are many restrictions on the practical application of fertilizers. In this study, microbial biochar formulations (BCMs) were prepared by loading biochar with B. subtilis SL-44. Pot experiments were conducted to evaluate the effects of the BCMs on soil fertility, Fusarium wilt control, and radish plant growth. The application of BCMs dramatically improved soil properties and favored plant growth. Compared with SL-44 and biochar treatments, the BCMs treatments increased radish plant physical-chemical properties and activities of several enzymes in the soil. What's more, Fusarium wilt incidence had decreased by 59.88%. In addition, the BCMs treatments exhibited a significant increase in the abundance of bacterial genera in the rhizosphere soil of radish. Therefore, this study demonstrated that BCMs may be an eco-friendly strategy for improving soil fertility, reducing Fusarium wilt, and promoting radish plant growth.

Co-composting of faecal sludge and carbon-rich wastes in the earthworm's synergistic cooperation system: Performance, global warming potential and key microbiome

Composting is an effective alternative for recycling faecal sludge into organic fertilisers. A microflora-earthworm (Eisenia fetida) synergistic cooperation system was constructed to enhance the composting efficiency of faecal sludge. The impact of earthworms and carbon-rich wastes (rice straw (RS) and sawdust (S)) on compost properties, greenhouse gas emissions, and key microbial species of composting were evaluated. The addition of RS or S promoted earthworm growth and reproduction. The earthworm-based system reduced the volatile solid of the final substrate by 13.19-16.24 % and faecal Escherichia coli concentrations by 1.89-3.66 log10 cfu/g dry mass compared with the earthworm-free system. The earthworm-based system increased electrical conductivity by 0.322-1.402 mS/cm and reduced C/N by 56.16-64.73 %. The NH₄⁺:NO₃^- ratio of the final faecal sludge and carbon-rich waste was <0.16. The seed germination index was higher than 80 %. These results indicate that earthworms contribute to faecal sludge maturation. Earthworm addition reduced CO₂ production. The simultaneous addition of earthworms and RS system (FRS2) resulted in the lowest global warming potential (GWP). The microbial diversity increased significantly over time in the RS-only system, whereas it initially increased and later decreased in the FRS2 system. Cluster analysis revealed that earthworms had a more significant impact on the microbial community than the addition of carbon-rich waste. Co-occurrence networks for earthworm-based systems were simple than those for earthworm-free systems, but the major bacterial genera were more complicated. Highly abundant key species (norank_f_Chitinophagaceae and norank_f_Gemmatimonadaceae) are closely related. Microbes may be more cooperative than competitive, facilitating the conversion of carbon and nitrogen in earthworm-based systems. This work has demonstrated that using earthworms is an effective approach for promoting the efficiency of faecal sludge composting and reducing GWP.

Denitrification performance and bacterial ecological network of a reactor using biodegradable poly(3-hydroxybutyrate-co-3-hydroxyvalerate) as an electron donor for nitrate removal from aquaculture wastewater

Nitrate accumulation is a common phenomenon in aquaculture that can lead to eutrophication of surrounding water bodies. This study used poly(3-hydroxybutyrate-co-3-hydroxyvalerate) (PHBV) as a carbon source and substrate and performed a microbial co-occurrence network ecological analysis to elucidate the denitrification processes in two packed-bed reactors with different salinities. The denitrification rate reached maximum values of 0.438 and 0.446 kg m^-3 d^-1 in reactor I (salinity 0 ‰) and reactor II (salinity 20 ‰), respectively. Although ammonia was formed in both systems based on dissimilation nitrate reduction to ammonia (DNRA), the concentration was very low (2.47 ± 1.99 and 2.84 ± 1.79 mg L^-1); moreover, the nitrite content was average (1.01 ± 0.87 and 0.96 ± 0.86 mg L^-1). These results suggested that denitrification dominated in both reactors. PHBV generally presented a stable release of DOC, although a sharp increase was observed in the start-up period of reactor II. 16S rRNA results showed that reactor I had richer microbial diversity than reactor II. Among the top ten taxa, Betaproteobacteria was the dominant class in reactor I while Gammaproteobacteria was the dominant class in reactor II. In the stable period, Thauera and Denitromonas was the most abundant genera in reactor I and reactor II, respectively. In addition, the bacterial co-occurrence network showed that reactor I had a more complex node and edge network and faster start-up time compared to reactor II; however, reactor II had a more stable nitrogen removal capacity. Higher expression of NorB and NosZ genes in reactor II indicated higher efficient denitrification in seawater system. The SEM and FTIR showed bacterial development and materials surface erosion. These findings verified the denitrification performance and niche differences between freshwater and seawater environments.

Potassium channel blocker selectively enriched Geobacter from mixed-cultured electroactive biofilm: Insights from microbial community, functional prediction and gene expressions

This study investigated the effects of electrical signaling disruption induced by adding tetraethylammonium (TEA, a potassium channel blocker) on the formation of mixed-cultured electroactive biofilms, especially the relative abundance of Geobacter over time. Results showed that TEA addition decelerated the biofilm formation, but selectively enriched Geobacter over time (45.8% on Day 32, 67.7% on Day 60 and 78.1% on Day 90), thus resulting in higher final extracellular electron transfer (EET) efficiency. Redundancy analysis (RDA) confirmed that TEA and operation time were significant factors for the selective enrichment of Geobacter. Moreover, increase in cellular processes and signal processing by PICRUSt analysis indicated adaptive responses of electrogenic biofilms to electrical signaling disruption. Furthermore, qRT-PCR indicated the compensatory roles of key cytochromes and pilA in electrochemical communication, which induced Geobacter enrichment. This work provided a broader understanding of electroactive biofilm regulation and potential applications for electricity generation and biosensor in the future.

Biofilm stratification in counter-diffused membrane biofilm bioreactors (MBfRs) for aerobic methane oxidation coupled to aerobic/anoxic denitrification: Effect of oxygen pressure

Aerobic methane oxidation coupled with denitrification (AME-D) executed in membrane biofilm bioreactors (MBfRs) provides a high promise for simultaneously mitigating methane (CH₄) emissions and removing nitrate in wastewater. However, systematically experimental investigation on how oxygen partial pressure affects the development and characteristics of counter-diffusional biofilm, as well as its spatial stratification profiles, and the cooperative interaction of the biofilm microbes, is still absent. In this study, we combined Optical Coherence Tomography (OCT) with Confocal Laser Scanning Microscopy (CLSM) to in-situ characterize the development of counter-diffusion biofilm in the MBfR for the first time. It was revealed that oxygen partial pressure onto the MBfR was capable of manipulating biofilm thickness and spatial stratification, and then managing the distribution of functional microbes. With the optimized oxygen partial pressure of 5.5 psig (25% oxygen content), the manipulated counter-diffusional biofilm in the AME-D process obtained the highest denitrification efficiency, due mainly to that this biofilm had the proper dynamic balance between the aerobic-layer and anoxic-layer where suitable O₂ gradient and sufficient aerobic methanotrophs were achieved in aerobic-layer to favor methane oxidation, and complete O₂ depletion and accessible organic sources were kept to avoid constraining denitrification activity in anoxic-layer. By using metagenome analysis and Fluorescence in situ hybridization (FISH) staining, the spatial distribution of the functional microbes within counter-diffused biofilm was successfully evidenced, and Rhodocyclaceae, one typical aerobic denitrifier, was found to survive and gradually enriched in the aerobic layer and played a key role in denitrification aerobically. This in-situ biofilm visualization and characterization evidenced directly for the first time the cooperative path of denitrification for AME-D in the counter-diffused biofilm, which involved aerobic methanotrophs, heterotrophic aerobic denitrifiers, and heterotrophic anoxic denitrifiers.

Chemical fumigants control apple replant disease: Microbial community structure-mediated inhibition of Fusarium and degradation of phenolic acids

Fusarium and phenolic acids in apple replant soil have deleterious effects on soil, which affects the growth of young replanted apple trees. Here, we studied the effects of different chemical fumigants (metham sodium, dazomet, calcium cyanamide, 1,3-dichloropropene, and methyl bromide) on Fusarium and phenolic acids in soil. The chemical fumigants disturbed the apple replant soil microbial community to different degrees in the order from highest to the lowest as methyl bromide > 1,3-dichloropropene > dazomet > metham sodium > calcium cyanamide. Compared with the control, the total numbers of Operational Taxonomic Unit (OTU) were 104.63 % and 9.38 % lower in the methyl bromide and calcium cyanamide treatments, respectively while the average contents of Fusarium were 88.04 % and 59.18% lower in these treatments, respectively. Higher disturbance degrees resulted in a slower recovery rate of the soil microbial community, which facilitated the transformation of the soil into a disease-suppressing state. During the recovery process, the roots recruited Streptomyces OTU2796 and Bacillus OTU2243, which alleviated Fusarium-induced stress via the synthesis of polyketones and macrolides. The roots also recruited Sphingomonas OTU3488, OTU5572, and OTU8147, which alleviated phenolic acid-induced stress through the degradation of benzoate and polycyclic aromatic hydrocarbons.

Microbial community regulation and performance enhancement in gas biofilters by interrupting bacterial communication

BACKGROUND

Controlling excess biomass accumulation and clogging is important for maintaining the performance of gas biofilters and reducing energy consumption. Interruption of bacterial communication (quorum quenching) can modulate gene expression and alter biofilm properties. However, whether the problem of excess biomass accumulation in gas biofilters can be addressed by interrupting bacterial communication remains unknown.

RESULTS

In this study, parallel laboratory-scale gas biofilters were operated with Rhodococcus sp. BH4 (QQBF) and without Rhodococcus sp. BH4 (BF) to explore the effects of quorum quenching (QQ) bacteria on biomass accumulation and clogging. QQBF showed lower biomass accumulation (109 kg/m³) and superior operational stability (85-96%) than BF (170 kg/m³; 63-92%) at the end of the operation. Compared to BF, the QQBF biofilm had lower adhesion strength and decreased extracellular polymeric substance production, leading to easier detachment of biomass from filler surface into the leachate. Meanwhile, the relative abundance of quorum sensing (QS)-related species was found to decrease from 67 (BF) to 56% (QQBF). The QS function genes were also found a lower relative abundance in QQBF, compared with BF. Moreover, although both biofilters presented aromatic compounds removal performance, the keystone species in QQBF played an important role in maintaining biofilm stability, while the keystone species in BF exhibited great potential for biofilm formation. Finally, the possible influencing mechanism of Rhodococcus sp. BH4 on biofilm adhesion was demonstrated. Overall, the results of this study achieved excess biomass control while maintaining stable biofiltration performance (without interrupting operation) and greatly promoted the use of QQ technology in bioreactors. Video Abstract.

Rapid initiation of a single-stage partial nitritation-anammox process treating low-strength ammonia wastewater: Novel insights into biofilm development on porous polyurethane hydrogel carrier

Media-supported biofilm is a powerful strategy for growth and enrichment of slow-growing microorganisms. In this study, a single-stage nitritation-anammox process treating low-strength wastewater was successfully started to investigate the biofilm development on porous polyurethane hydrogel carrier. Suspended biomass migration into the carrier and being entrapment by its internal interconnected micropores dominated the fast initial colonization stage. Both surface-attached growth and embedded growth of microbes occurred during the following accumulation stage. Fluorescence in situ hybridization analysis of mature biofilm indicated that ammonium-oxidizing bacteria located at the outer layers featured a surface-attached growth, while anammox microcolonies housed in the inner layers proliferated as an embedded-like growth. In this way, the growth rate of anammox bacteria (predominated by Candidatus Kuenenia) could be 0.079 d^-1. The anammox potential of the biofilm reactor reached 1.65 ± 0.3 kg/m³/d within two months. This study provides novel insights into nitritation-anammox biofilm formation on the porous polyurethane hydrogel carrier.

Soil indigenous microorganisms alleviate soluble vanadium release from industrial dusts

Vanadium-bearing dusts from industrial processes release abundant toxic vanadium, posing imminent ecological and human health concerns. Although the precipitation of these dusts has been recognized as the main source of soil vanadium pollution, little is known regarding the interrelationships between industrial dusts and soil inherent compositions. In this study, the interactions between dusts from vanadium smelting and soil indigenous microorganisms were investigated. Soluble vanadium (V) [V(V)] released from industrial dusts was reduced by 41.5 ± 0.39% with soil addition, compared to water leaching. Reducible fraction accounted for the highest proportion (55.1 ± 1.73%) of vanadium speciation in the resultant soils, while residual vanadium fraction increased to 83.7 ± 3.22% in the leached dusts. Functional genera (e.g., Aliihoeflea, Actinotalea) that transformed V(V) to insoluble vanadium (IV) alleviated dissolved vanadium release. Nitrate/nitrite reduction and glutathione metabolisms contributed to V(V) immobilization primarily. Structural equation model analysis indicated that V(V) reducers had significant negative impacts on soluble V(V) in the leachate. This first-attempt study highlights the importance of soil microorganisms in immobilizing vanadium from industrial dusts, which is helpful to develop novel strategies to reduce their environmental risks associated to vanadium smelting process.

Micron-scale biogeography reveals conservative intra anammox bacteria spatial co-associations

Micron-scale resolution can help to reliably identify true taxon-taxon interactions in complex microbial communities. Despite widespread recognition of the critical role of metabolic interactions in anaerobic ammonium oxidation (anammox) system performance, no studies have examined microbial interactions at the micron-scale in anammox consortia. To fill this gap, we extensively sampled (totally 242 samples) the consortia of a lab-scale anammox reactor at different length scales, including bulk-scale (∼cm), macro-scale (300-500 µm) and micron-scale (70-100 µm). We firstly observed evident micron-scale heterogeneity in anammox consortia, with the relative abundance of anammox bacteria fluctuated greatly across individual clusters (2.0%-79.3%), indicating that the biotic interactions play a significant role in the assembly of anammox communities under well-controlled and well-mixed condition. Importantly, by mapping the spatial associations in anammox consortia at micron-scale, we demonstrated that the conserved co-associations for anammox bacteria were restricted to three different Brocadia species over time, and their co-associations with heterotrophs were random, implying that there was no statistically significant symbiotic interaction between anammox bacteria and other heterotrophic populations. Further metagenomic binning revealed that the quorum sensing with secondary messenger c-di-GMP potentially holding on the conservative metabolic cooperation among Brocadia species. These results shed new light on the social behavior of the anammox community. Overall, delineating of biological structures at micron-scale opens a new way of monitoring the microbial spatial structure and interactions, paving the way for improved community engineering of biotreatment systems.

Biofilm phenotypes and internal community succession determines distinct growth of anammox bacteria in functional anammox biofilms

In this study, time-series anammox functional biofilms were obtained in a lab-scale simultaneous partial nitritation/anammox process for treating high-strength ammonium. The variations in the biofilm phenotypes, community succession, and anammox bacteria abundance over time were evaluated using optical microscopy, 16S rRNA gene sequencing, and qPCR. The result revealed that biofilm has three distinct stages of the community development trajectory across a 182-day temporal scale. Anammox bacteria growth rates were 0.035 d^-1, 0.0015 d^-1, and 0.011 d^-1, respectively. The diversity and network analysis suggested that the positive priority effect of ammonia oxidizing bacteria was the primary factor for the rapid proliferation of anammox bacteria, and the species replacement triggering priority effect forfeiture and substituted functional recruitment were reasons for the slow proliferation and stable proliferation of anammox bacteria, respectively. Taken together, the higher microbial diversity and stable community composite were key prerequisites for the proliferation of the anammox bacteria.

Varied interspecies interactions between anammox and denitrifying bacteria enhanced nitrogen removal in a single-stage simultaneous anammox and denitrification system

The simultaneous anammox and denitrification (SAD) system has received growing interest for the enhanced nitrogen removal, while the ecological traits of microbial community including spatial distribution characteristics, assembly processes and interspecies interactions have not been fully unraveled. The present study applied metagenomics and ecological analysis methods to gain the ecological traits of microbial communities in the SAD system across different organic substrate loadings. Results showed that organic matter significantly affected the bioreactor performance, and the optimal total nitrogen removal efficiency reached 93.4 ± 0.7% under the COD concentrations of 180 ± 18.2 mg/L. Functional organisms including Candidatus Brocadia (3.9%), Denitratisoma (1.6%), Dokdonella (4.4%) and Thauera (4.6%) obviously enriched under the optimal organic loading conditions. Moreover, microbial communities were significantly governed by deterministic process under high organic concentrations, and the denitrifying organisms displayed important ecological roles in the communities. Although anammox bacteria obviously enriched at the middle of bioreactor, it possessed the highest expression activities at both bottom and middle sites. Denitrifying bacteria that enriched at the bottom sites strongly achieved nitrate reduction and provided nitrite for anammox bacteria, while these organisms trended to compete nitrite with anammox bacteria at the middle site. These findings highlight the importance of microbial ecology in the SAD systems, which may expand our understanding of the synergistic patterns between anammox and denitrifying bacteria.