Relationship of Biodiversity with Heavy Metal Tolerance and Sorption Capacity: A Meta-Analysis Approach

Mitigating the risk of antibiotic resistance and pathogenic bacteria in swine waste: The role of ectopic fermentation beds

The ectopic fermentation bed (EFB) is used to recycle animal waste, but the fate and dynamic change of antibiotic resistance genes (ARGs) with biocide or heavy metal resistance genes (B/MRGs) and pathogens remain unclear. We performed metagenomic sequencing on 129 samples to study the resistome and bacteriome in pig feces from 24 farms, comparing these profiles with EFBs from five farms, and one farm's EFB was monitored for 154 days. Results showed pig feces from different cities (Chengdu, Meishan, and Chongqing) shared 284 of 311 ARG subtypes, with over 70 % being high-risk ARGs, and 106 of 114 pathogenic bacteria. Swine farms were heavily contaminated with co-occurrences of risky ARGs, B/MRGs, and pathogenic hosts, particularly Escherichia coli and Streptococcus suis being hosts of multidrug ARGs. The application of EFBs markedly mitigated these risks in feces, showing a 3.09-fold decrease in high-risk ARGs, a 72.22 % reduction in B/MRGs, a 3.95-fold drop in prioritized pathogens, an 89.09 % decline in the relative abundance of pig pathogens, and a simplification of their correlation networks and co-occurrence patterns. A mantel analysis revealed that metal contents (Fe, Mn, and Cu) and time influenced pathogen and ARG profiles. Pathogens, ARGs, and risk ARGs exhibited periodic variations, peaking at days 14, 84, and 154, with 70-day intervals. This study provides a comprehensive assessment of the risks associated with pig feces and EFBs and demonstrates that EFBs reduce ARG risks by inhibiting their associations with B/MRGs and pathogens. These findings can help guide and improve the management of antimicrobial resistance and pathogenic contaminants in EFB applications to reduce environmental pollution.

Biotic and abiotic drivers of soil carbon, nitrogen and phosphorus and metal dynamic changes during spontaneous restoration of Pb-Zn mining wastelands

The biotic and abiotic mechanisms that drive important biogeochemical processes (carbon, nitrogen, phosphorus and metals dynamics) in metal mine revegetation remains elusive. Metagenomic sequencing was used to explored vegetation, soil properties, microbial communities, functional genes and their impacts on soil processes during vegetation restoration in a typical Pb-Zn mine. The results showed a clear niche differentiation between bacteria, fungi and archaea. Compared to bacteria and fungi, the archaea richness were more tightly coupled with natural restoration changes. The relative abundances of CAZyme-related, denitrification-related and metal resistance genes reduced, while nitrification, urease, inorganic phosphorus solubilisation, phosphorus transport, and phosphorus regulation -related genes increased. Redundancy analysis, hierarchical partitioning analysis, relative-importance analysis and partial least squares path modelling, indicated that archaea diversity, primarily influenced by available lead, directly impacts carbon dynamics. Functional genes, significantly affected by available cadmium, directly alter nitrogen dynamics. Additionally, pH affects phosphorus dynamics through changes in bacterial diversity, while metal dynamics are directly influenced by vegetation. These insights elucidate natural restoration mechanisms in mine and highlight the importance of archaea in soil processes.

A novel tiered ecological risk framework linking metal-driven pollution to soil microbial dynamics in a fragile ecosystem

Widespread soil heavy metal (HM) pollution has caused great concerns worldwide. A refined and cost-effective ecological risk assessment (ERA) is critical for managing these risks. Herein, we propose a novel tiered ERA framework to evaluate indigenous pollution-effect associations in contaminated soils. This framework progressively applies source apportionment, spatial regression, deterministic and probabilistic risk characterization, ecological surveys of soil phospholipid fatty acids (PLFAs), and successive multivariable statistics to provide comprehensive ERA evidence, as demonstrated in an ecologically fragile mining area. The risk screening phase identified Zn, Pb, Cd, Cu, and Hg as priority contaminants, and mining activities contributed 86.5 % (Zn), 87.2 % (Pb), 83.3 % (Cd), 64.6 % (Cu), and 52.3 % (Hg) of the total soil concentrations in the study area determined by the positive matrix factorization (PMF) model. The risk quotient of ecological criteria tailored to different land uses exhibited ecologically relevant risk grading. The risk quantification phase determined the overall risk probabilities to be 53.98 %, 11.12 %, 9.69 %, 5.03 % and 1.34 % for Zn, Pb, Cu, Cd and Hg, respectively, and provided adaptive HM priority lists with different risk grades. The risk causeeffect attribution phase confirmed that HMs significantly reduced soil fungal PLFA abundance and indirectly altered the PLFA structure by decreasing the soil pH. The proposed framework offers a cost-effective, refined and feasible technical support for ecological risk management in contaminated areas.

Removal of high concentrations of zinc, cadmium, and nickel heavy metals by Bacillus and Comamonas through microbially induced carbonate precipitation

Heavy metal pollution in urban freshwater, driven by anthropogenic activities, poses significant risks to aquatic ecosystems and human health due to its toxicity and persistence. Recently, urease-producing bacteria have gained attention for their ability to remove heavy metals through microbial-induced carbonate precipitation (MICP). In this study, eight urease-producing bacteria were exposed to individual solutions of zinc (Zn2+), cadmium (Cd2+), and nickel (Ni2+) at concentrations ranging from 0 to 6 mM to assess their resistance. Three strains-Bacillus subtilis HMZC1 (B2), Bacillus sp. HMZCSW (B6), and Comamonas sp. HMZC (B11)-survived at 4 mM and 6 mM, while most others could not tolerate 4 mM. Their urea-degrading ability was tested at different pH levels, identifying an optimal pH of 7 for MICP. Heavy metal carbonate precipitation experiments at 4 mM and 6 mM revealed that all three strains achieved > 93% removal of Zn2+, Ni2+, and Cd2+ within 72 h. Comamonas sp. HMZC exhibited the highest efficiency, achieving > 95% removal of certain heavy metals at 6 mM. Statistical analysis using one-way ANOVA revealed significant differences (p < 0.05) in heavy metal removal efficiencies among the strains for certain treatment conditions (Cd2+ and Zn2+ at 4 mM), although not all comparisons reached statistical significance. Scanning Electron Microscopy and X-ray Diffraction confirmed the morphology and composition of the precipitated heavy metal carbonates. Our findings demonstrate that urease-producing bacteria can effectively immobilize multiple heavy metals, highlighting the MICP process as a practical and sustainable biological approach for ecological restoration and wastewater treatment.

Predicting sorption of diverse organic compounds in soil-water systems: Meta-analysis, machine learning modeling, and global soil mapping

In recent decades, the environmental detection of various organic compounds (OCs) has highlighted the limitations of conventional soil-water sorption models, which simplify complex experimental conditions and often overlook OCs with polyfunctional and ionizable structures. To address these shortcomings, we compiled a comprehensive soil-water sorption dataset encompassing 20,945 data points for 419 OCs with various functional groups and 1037 different soils. Meta-analysis of the dataset revealed the trends of soil sorption associated with OC substructures, soil properties, and solution conditions. Machine learning models employing the XGBoost algorithm, in conjunction with MACCS fingerprints and experimental conditions, were developed to cover the entire spectrum of speciation for cationic, neutral, and anionic species. Among these, the individual models tailored to each speciation achieved an overall root-mean-square-error value of 0.32 for log Kd. Model interpretation revealed that the models correctly understood the contributions of various substructures, such as multiple aromatic rings and nitrogen or oxygen atoms, to sorption. The models were also found to accurately capture isotherm nonlinearity and the pH effect on the sorption of ionizable OCs. Finally, utilizing soil properties from the Harmonized World Soil Database, the models predicted the sorption of diverse OCs based on global soil properties under simulated environmental scenarios.

Arsenic-induced modulation of virulence and drug resistance in Pseudomonas aeruginosa

Arsenic contamination of water sources, whether from natural or industrial origins, represents a significant risk to human health. However, its impact on waterborne pathogens remains understudied. This research explores the effects of arsenic exposure on the opportunistic pathogen Pseudomonas aeruginosa, a bacterium found in diverse environments. The arsenic exposure at concentrations of 0.12-20 mg/L As(III) resulted in rapid growth arrest of P. aeruginosa. Moreover, arsenic exposure significantly reduced the production of key virulence factors such as elastase (by 1.48- to 9.24-fold), pyocyanin, and flagella while increasing siderophore and extracellular polysaccharide production (by 1.44-1.75 and 1.36-2.59 times, respectively). Proteomic analysis revealed that both low (0.12 mg/L) and high (1.2 mg/L) As(III) levels activated an antioxidant defense response, with upregulation of Fnr-2, TrxB2, and Ohr. Furthermore, arsenic-induced the overexpression of multidrug resistance efflux proteins MexAB-OprM, MexCD-OprJ, and MexEF-OprN. At the same time, proteins associated with quorum sensing (QS), type III secretion system (T3SS), pyocyanin biosynthesis, and flagellar assembly were downregulated. In vitro assays confirmed that arsenic reduced bacterial virulence and significantly enhanced survival and proliferation under antibiotic treatment. These results indicate that arsenic exposure modulates the virulence and antibiotic resistance of P. aeruginosa, raising concerns about the public health risks posed by the convergence of arsenic-contaminated water and multidrug-resistant bacteria.

Optimization and Mechanism of Ca2+ Biosorption by Virgibacillus pantothenticus Isolated from Gelatine Wastewater

Gelatine-processing wastewater contains much residual sludge due to its high calcium ion concentration and chemical oxygen demand. In this study, N3-4, a microbial strain with excellent calcium tolerance capacity, was screened and identified as Virgibacillus pantothenticus using morphological observation, physiological and biochemical testing, and 16S rRNA sequence analysis. Its growth characteristics were investigated, and the maximum adsorption of calcium reached 572.43 μg/g under the optimal conditions (contact time, 72.68 min; biomass dosage, 1.3 g/l; initial calcium concentration, 142.01 mg/l). Conditions were optimized using response surface methodology and structural characterization. The structure of the bacterial pellets was altered from flat to rough, accompanied by bulges and sediments after Ca2+ treatment, according to structural characterization. Energy-dispersive X-ray spectroscopy of the bacterial precipitates under calcium(II) treatment revealed the immobilization of Ca2+ species on the bacterial cell surface. The results indicate that -OH, -NH2, C≡C, C=O, -CH2, -C-O-, and -C-N groups play a significant role in calcium dispersion on the surface of V. pantothenticus.

Variations of microbiota and metabolites in rhizosphere soil of Carmona microphylla at the co-contaminated site with polycyclic aromatic hydrocarbons and heavy metals

Co-contamination with organic/inorganic compounds is common in industrial area and poses a great risk to local soil ecological environment. In this study, an operating ink factory site co-contaminated with polycyclic aromatic hydrocarbons (PAHs, mild to moderate pollution level) and heavy metals (HMs, heavy pollution level) was selected and screened for native vegetation, Carmona microphylla. High-throughput sequencing and metabolomics were mainly used to investigate the responses of soil bacteria and metabolites to the composite pollution and rhizosphere effect. As the results showed, among three pollution levels, a medium level of pollution was favorable to increase the richness and diversity of soil bacterial community, while high level of pollution greatly decreased special OTUs number. In addition, HMs were the most significant factors driving bacterial community structure, especially for Cd. The influence of medium molecular weight PAHs with 4 rings (MMW-PAHs) on dominant bacteria was greater than low molecular weight PAHs with 2-3 rings (LMW-PAHs) and high molecular weight PAHs with 5-6 rings (HMW-PAHs). Soil bacterial function was affected mainly by pollution level, but not rhizosphere effect, in which high pollution level changed α diversity and structure and composition of C- and N-cycling bacteria. Rhizosphere promoted network complexity by increasing the connection densities among bacterial communities, metabolites, soil properties and the involved number of metabolites. Compared to HMs, PAHs played a more important role in shaping bacterial community through affecting metabolites in non-rhizosphere soil, which was different from rhizosphere soil with a more significant effect of HMs than PAHs. Some key bacterial taxa have established resistance to HMs in rhizosphere soils, whereas they were sensitive to compound contamination in non-rhizosphere soils. Some key bacterial taxa are resistant to HMs in rhizosphere soils, whereas they are susceptible to complex contamination in non-rhizosphere soils, which could be a consequence of the rhizosphere by regulating soil metabolism. It also provides a valuable reference for how co-contaminants and rhizosphere effect shape together soil bacterial community through the changes of soil metabolites.

Interactions between arsenic and nitrogen regulate nitrogen availability and arsenic mobility in flooded paddy soils

In paddy soils, arsenic (As) stress influences nitrogen (N) transformation while application of N fertilizers during rice cropping affects As transformation. However, specific interactive effects between As and N in flooded paddy soils on As mobility and N availability were unclear. Here, we examined N and As dynamics in flooded paddy soils treated with four As levels (0, 30, 80 and 150 mg kg-1) and three urea additions (0, 4 and 8 mmol N kg-1). Arsenic contamination inhibited diazotrophs (nifH) and fungi but promoted AOA and denitrification genes (narG, nirK, nirS), decreasing dissolved organic N, NH4+-N and NO3--N. Besides, urea application stimulated As- and Fe-reducing bacteria (arrA and Geo) coupled with anammox. On Day 28, the addition of 8 mmol N kg-1 increased total As concentrations in solutions of soils treated with 30 and 80 mg As kg-1 by 2.4 and 1.8 times compared with the nil-N control. In contrast, at 150 mg As kg-1, it decreased the total As concentration in soil solution by 63 % through facilitating As(III) oxidation coupled with NO3--N reduction. These results indicate that As contamination decreases N availability, but urea application affects As mobility, depending on As contamination level.

Biochemical transformation and bioremediation of thallium in the environment

Thallium (Tl) is a toxic element associated with minerals, and its redistribution is facilitated by both geological and anthropogenic activities. In the natural environment, the transformation and migration of Tl mediated by (micro)organisms have attracted increasing attention. This review presents an overview of the biochemical transformation of Tl and the bioremediation strategies for Tl contamination. In the environment, Tl exists in various forms and originates from diverse sources. The global distribution characteristics of Tl in various media are summarized here, while its speciation and toxicity mechanism to organisms are elucidated. Interactions between (micro)organisms and Tl are commonly observed in the environment. Microbial response mechanisms to typical Tl exposure are analyzed at both species and gene levels, and the possibility of microorganisms as bio-indicators for monitoring Tl contamination is also highlighted. The processes and mechanisms involved in the microbial and benthic mediated transformation of Tl, as well as its enrichment by plants, are discussed. Additionally, in situ bioremediation strategies for Tl contamination and bio-treatment techniques for Tl-containing wastewater are summarized. Finally, the existing knowledge gaps and future research challenges are emphasized, including Tl distribution characteristics in the atmosphere and ocean, the key molecular mechanisms underlying Tl transformation by organisms, the screening of potential Tl oxidizing microorganisms and hyperaccumulators, as well as the revelation of global biogeochemical cycling pathways of Tl.

Bacterial consortium amendment effectively reduces Pb/Cd bioavailability in soil and their accumulation in wheat

Microbial remediation can maintain the sustainability of farmlands contaminated with heavy metals (HMs). However, the effects of bacterial consortium on crop growth and potential risks under HM stress, as well as its mechanisms, are still unclear compared with a single microorganism. Here, we investigated the effect of a bacterial consortium consisting of some HMs-resistant bacteria, including Bacillus cereus, Bacillus thuringiensis, and Herbaspirillum huttiense, on plant growth promotion and inhibition of Pb/Cd accumulation within different contaminated soil-wheat systems through pot experiments. The results showed that microbial inoculation alleviated HMs-induced growth inhibition by activating antioxidant enzymes and inhibiting lipid peroxidation, and enhanced plant growth in the bacterial consortium. Compared to a single strain (Bacillus cereus, Bacillus thuringiensis, or Herbaspirillum huttiense), the bacterial consortium was more conducive to improving root development and reducing the content of available HMs in soil (4.5-10.3%) and its transfer to shoot (4.3-8.4%). Moreover, bacterial consortium significantly increased soil enzyme activities and available nutrients, resulting in nearly twice that of a single strain on the effect of soil quality and plant growth. Correlation analysis and least square path analysis showed that the bacterial consortium could significantly reduce the HMs-enrichment/transport from soil to shoot than a single strain by regulating soil available HMs and biochemical properties, as well as the parameters for plant growth. This study emphasizes that bacterial consortium promotes the growth of the crop wheat and reduces the risk of HMs entering human food chain, further providing an effective strategy for the safe production of food crops in contaminated soils.

Fungal community determines soil multifunctionality during vegetation restoration in metallic tailing reservoir

Microorganisms are pivotal in sustaining soil functions, yet the specific contributions of bacterial and fungal succession on the functions during vegetation restoration in metallic tailing reservoirs remains elusive. Here, we explored bacterial and fungal succession and their impacts on soil multifunctionality along a ∼50-year vegetation restoration chronosequence in China's largest vanadium titano-magnetite tailing reservoir. We found a significant increase in soil multifunctionality, an index comprising factors pertinent to soil fertility and microbially mediated nutrient cycling, along the chronosequence. Despite increasing heavy metal levels, both bacterial and fungal communities exhibited significant increase in richness and network complexity over time. However, fungi demonstrated a slower succession rate and more consistent composition than bacteria, indicating their relatively higher resilience to environmental changes. Soil multifunctionality was intimately linked to bacterial and fungal richness or complexity. Nevertheless, when scrutinizing both richness and complexity concurrently, the correlations disappeared for bacteria but remained robust for fungi. This persistence reveals the critical role of the fungal community resilience in sustaining soil multifunctionality, particularly through their stable interactions with powerful core taxa. Our findings highlight the importance of fungal succession in enhancing soil multifunctionality during vegetation restoration in metallic tailing reservoirs, and manipulating fungal community may expedite ecological recovery of areas polluted with heavy metals.

Sediment microbial communities of a technogenic saline-alkaline reservoir

Various natural saline and alkaline habitats have recently been widely investigated, but knowledge of anthropogenic habitats with more complex environmental conditions is still lacking. This research looks at the structure of microbial communities in 18 bottom sediment samples from a technogenic water body with saline and alkaline composition. The core samples were collected from 2 columns in the western and eastern parts of an artificial water body at the Verkhnekamskoe Salt Deposit (Russia). The microbial community structure was studied using high-throughput 16S rRNA gene sequencing. The bottom sediment composition (salinity, pH, and toxic element content) varies greatly with depth and laterally throughout the study area. The study found a considerable difference in bacterial community diversity between the 2 columns, but no considerable difference was found between the communities at various depths of the studied layers. Proteobacteria, Firmicutes, and Actinobacteria, which are common in both natural and artificial saline and alkaline environments, make up the majority of the bacteria found in the samples. Studies have shown that salinity and total alkalinity are the key factors influencing the formation of microbial communities. Ralstonia and Pseudomonas were the two most common genera in the sediment samples. These two genera are known for having high metabolic flexibility, which means they can survive in extreme environments and use a variety of carbon compounds as energy sources. The study also found that Ralstonia is indicator bacteria in samples with the highest concentrations of toxic elements compared to the other samples. A relatively high microbial diversity was discovered in the studied anthropogenic water reservoir despite the extreme alkaline and saline conditions, but it is considerably lower than that found in natural, less alkaline habitats. This research offers insight into the mechanisms behind microbial community formation in complex anthropogenic environments and covers key factors in microbial community distribution.

A meta-analysis on crop growth and heavy metals accumulation with PGPB inoculation in contaminated soils

Plant growth-promoting bacteria (PGPB) offer a promising solution for mitigating heavy metals (HMs) stress in crops, yet the mechanisms underlying the way they operate in the soil-plant system are not fully understood. We therefore conducted a meta-analysis with 2037 observations to quantitatively evaluate the effects and determinants of PGPB inoculation on crop growth and HMs accumulation in contaminated soils. We found that inoculation increased shoot and root biomass of all five crops (rice, maize, wheat, soybean, and sorghum) and decreased metal accumulation in rice and wheat shoots together with wheat roots. Key factors driving inoculation efficiency included soil organic matter (SOM) and the addition of exogenous fertilizers (N, P, and K). The phylum Proteobacteria was identified as the keystone taxa in effectively alleviating HMs stress in crops. More antioxidant enzyme activity, photosynthetic pigment, and nutrient absorption were induced by it. Overall, using PGPB inoculation improved the growth performance of all five crops, significantly increasing crop biomass in shoots, roots, and grains by 33 %, 35 %, and 20 %, respectively, while concurrently significantly decreasing heavy metal accumulation by 16 %, 9 %, and 37 %, respectively. These results are vital to grasping the benefits of PGPB and its future application in enhancing crop resistance to HMs.

Response of antioxidant activity, active constituent and rhizosphere microorganisms of Salvia miltiorrhiza to combined application of microbial inoculant, microalgae and biochar under Cu stress

Salvia miltiorrhiza, a widely used medicinal herb renowned for its properties in promoting blood circulation, removing blood stasis and alleviating pain, is currently facing quality degradation due to excessive heavy metal levels, posing a threat to medication safety. In order to investigate the effects of microbial inoculant, microalgae and biochar on the growth of Salvia miltiorrhiza under copper (Cu) stress, as well as its Cu absorption, antioxidant activity, active component contents and rhizosphere microbial community, a pot experiment was conducted. Salvia miltiorrhiza plants were cultivated in the soil containing 400 mg/kg of Cu for six months and treated with microbial inoculant, microalgae and biochar, either individually or in combination. Almost all soil amendment treatments led to an increase in root biomass. Notably, co-application of microbial inoculant and microalgae had the optimal effect with a 63.07 % increase compared to the group treated solely with Cu. Moreover, when microbial inoculant was applied alone or in combination with microalgae, the Cu content in plant roots was reduced by 19.29 % and 25.37 %, respectively, whereas other treatments failed to show a decreasing trend. Intriguingly, Cu stress increased the active component contents in plant roots, and they could also be enhanced beyond non-stress levels when microbial inoculant and microalgae were applied together or in combination with biochar. Analyses of plant antioxidant activity, soil properties and rhizosphere microorganisms indicated that these amendments may alleviate Cu stress by enhancing peroxidase activity, facilitating plant nutrient absorption, and enriching beneficial microorganisms capable of promoting plant growth and mitigating heavy metal-induced damage. This study suggests that the combined application of microbial inoculant and microalgae can reduce Cu levels in Salvia miltiorrhiza while enhancing its quality under Cu stress.

Engineered Bacillus subtilis Biofilm@Biochar living materials for in-situ sensing and bioremediation of heavy metal ions pollution

The simultaneous sensing and remediation of multiple heavy metal ions in wastewater or soil with microorganisms is currently a significant challenge. In this study, the microorganism Bacillus subtilis was used as a chassis organism to construct two genetic circuits for sensing and adsorbing heavy-metal ions. The engineered biosensor can sense three heavy metal ions (0.1-75 μM of Pb2+ and Cu2+, 0.01-3.5 μM of Hg2+) in situ real-time with high sensitivity. The engineered B. subtilis TasA-metallothionein (TasA-MT) biofilm can specifically adsorb metal ions from the environment, exhibiting remarkable removal efficiencies of 99.5% for Pb2+, 99.9% for Hg2+and 99.5% for Cu2+ in water. Furthermore, this engineered strain (as a biosensor and absorber of Pb2+, Cu2+, and Hg2+) was incubated with biochar to form a hybrid biofilm@biochar (BBC) material that could be applied in the bioremediation of heavy metal ions. The results showed that BBC material not only significantly reduced exchangeable Pb2+ in the soil but also reduced Pb2+ accumulation in maize plants. In addition, it enhanced maize growth and biomass. In conclusion, this study examined the potential applications of biosensors and hybrid living materials constructed using sensing and adsorption circuits in B. subtilis, providing rapid and cost-effective tools for sensing and remediating multiple heavy metal ions (Pb2+, Hg2+, and Cu2+).

Unveiling the performance of a novel alkalizing bacterium Enterobacter sp. LYX-2 in immobilization of available Cd

A novel alkalizing strain Enterobacter sp. LYX-2 that could resist 400 mg/L Cd was isolated from Cd-contaminated soil, which immobilized 96.05% Cd2+ from medium. Cd distribution analysis demonstrated that more than half of the Cd2+ was converted into extracellular precipitated Cd through mobilization of the alkali-producing mechanism by the strain LYX-2, achieving the high immobilization efficiency of Cd2+. Biosorption experiments revealed that strain LYX-2 had superior biosorption capacity of 48.28 mg/g for Cd. Pot experiments with Brassica rapa L. were performed with and without strain LYX-2. Compared to control, 15.92% bioavailable Cd was converted to non-bioavailable Cd and Cd content in aboveground vegetables was decreased by 37.10% with addition of strain LYX-2. Available Cd was mainly immobilized through extracellular precipitation, cell-surface biosorption and intracellular accumulation of strain LYX-2, which was investigated through Cd distribution, Scanning Electron Microscope and Energy-Dispersive X-ray Spectroscopy (SEM-EDS), Fourier Transform Infrared Spectroscopy (FT-IR), X-ray Photoelectron Spectroscopy (XPS) and Transmission Electron Microscopy (TEM) analysis. In addition, the application of strain LYX-2 significantly promoted the growth of vegetables about 2.4-fold. Above results indicated that highly Cd-resistant alkalizing strain LYX-2, as a novel microbial passivator, had excellent ability and reuse value to achieve the remediation of Cd-contaminated soil coupled with safe production of vegetables simultaneously.

Degradation of ciprofloxacin by persulfate activated by Fe(III)-doped BiOCl composite photocatalyst

Fe-BOC-X photocatalyst was successfully prepared by solvothermal method. The photocatalytic activity of Fe-BOC-X was determined by ciprofloxacin (CIP), a typical fluoroquinolone antibiotic. Under sunlight irradiation, all Fe-BOC-X showed better CIP removal performance than original BiOCl. In comparison, the photocatalyst with iron content of 50 wt% (Fe-BOC-3) has excellent structural stability and the best adsorption photodegradation efficiency. The removal rate of CIP (10 mg/L) by Fe-BOC-3 (0.6 g/L) reached 81.4% within 90 min. At the same time, the effects of photocatalyst dosage, pH, persulfate, persulfate concentration, and combinations of different systems (PS, Fe-BOC-3, Vis/PS, Vis/Fe-BOC-3, Fe-BOC-3/PS, and Vis/Fe-BOC-3/PS) on the reaction were systematically discussed. In reactive species trapping experiments, electron spin resonance (ESR) signals revealed that the photogenerated holes (h+), hydroxyl radical (•OH), sulfate radical (•SO4-), and superoxide radical (•O2-) played an important role in CIP degradation; hydroxyl radicals (•OH) and sulfate radicals (•SO4-) play a major role. Various characterization methods have demonstrated that Fe-BOC-X has larger specific surface area and pore volume than original BiOCl. UV-vis DRS indicate that Fe-BOC-X has wider visible light absorption and faster photocarrier transfer and provides abundant surface oxygen absorption sites for effective molecular oxygen activation. Accordingly, a large number of active species were produced and participated in the photocatalytic process, thus effectively promoting the degradation of ciprofloxacin. Based on HPLC-MS analysis, two possible decomposition pathways of CIP were finally proposed. The main degradation pathways of CIP are mainly due to the high electron density of piperazine ring in CIP molecule, which is mainly attacked by various free radicals. The main reactions include piperazine ring opening, decarbonylation, decarboxylation, and fluorine substitution. This study can better open up a new way for the design of visible light driven photocatalyst and provide more ideas for the removal of CIP in water environment.

Phytoremediation efficiency of Vigna mungo with the amalgamation of indigenous metal tolerant bacterial strain on metal polluted agriculture soil

This research was performed to evaluate physico-chemical properties of farmland soil nearby the magnesite mine site. Unexpectedly, few physico-chemical properties were crossing the acceptable limits. Particularly, the quantities of Cd (112.34 ± 3.25), Pb (386.42 ± 11.71), Zn (854.28 ± 3.53), and Mn (2538 ± 41.11) were crossing the permissible limits. Among 11 bacterial cultures isolated from the metal contaminated soil, 2 isolates names as SS1 and SS3 showed significant multi-metal tolerance up to the concentration of 750 mg L^-1. Furthermore, these strains also showed considerable metal mobilization as well as absorption ability on metal contaminated soil under in-vitro conditions. In a short duration of treatment, these isolates effectively mobilize and absorb the metals from the polluted soil. The results obtained from the greenhouse investigation with Vigna mungo revealed that the among various treatment (T1 to T5) groups, the T3 (V.mungo + SS1+SS3) showed remarkable phytoremediation potential (Pb: 50.88, Mn: 152, Cd: 14.54, and Zn: 67.99 mg kg^-1) on metal contaminated soil. Furthermore, these isolates influence the growth as well as biomass of V.mungo under greenhouse conditions on metal contaminated soil. These findings suggest that combining multi-metal tolerant bacterial isolates can improve the phytoextraction efficiency of V.mungo on metal-contaminated soil.

New insights into exogenous N-acyl-homoserine lactone manipulation in biological nitrogen removal system against ZnO nanoparticle shock

The effects and mechanisms of three N-acyl-homoserine lactones (AHLs) (C₄-HSL, C₆-HSL, and C₁₀-HSL) on responses of biological nitrogen removal (BNR) systems to zinc oxide nanoparticle (NP) shock were investigated. All three AHLs improved the NP-impaired ammonia oxidation rates by up to 50.0 % but inhibited the denitrification process via regulating nitrogen metabolism-related enzyme activities. C₄-HSL accelerated the catalase activity by 13.2 %, while C₆-HSL and C₁₀-HSL promoted the superoxide dismutase activity by 26.6 % and 18.4 %, respectively, to reduce reactive oxygen species levels. Besides, the enhancements of tryptophan protein and humic acid levels in tightly-bound extracellular polymeric substance by AHLs were vital for NP toxicity attenuation. The metabonomic analysis demonstrated that all three AHLs up-regulated the levels of lipid- and antioxidation-related metabolites to advance the system's resistance to NP shock. The "dual character" of AHLs emphasized the concernment of legitimately employing AHLs to alleviate NP stress for BNR systems.

Effect of Drying-Rewetting cycles on the metal adsorption and tolerance of natural biofilms

Drying-rewetting (D-RW) cycles can induce changes in biofilms by forcing the microbial community to tolerate and adapt to environmental pressure. Existing studies have mostly focused on the impact of D-RW cycles on the microbial community structure, and little attention has been paid to how D-RW cycles may change the biofilm tolerance and adsorption of heavy metals. We experimentally evaluated the effect of repeated D-RW cycles on the Cd²⁺ and Pb²⁺ adsorption and tolerance of biofilms. The equilibrium adsorption capacity of the biofilm decreased as the number of D-RW cycles was increased, which was attributed to a change in affinity between the biofilm and metal ions. For a binary metal system, the D-RW cycles affected the competitive adsorption of Cd²⁺ and Pb²⁺ by the biofilm. A synergistic effect was observed with one and three D-RW cycles, while an antagonistic effect was observed for the control film and five D-RW cycles. The tolerance of the biofilm to Cd²⁺ and Pb²⁺ increased with the number of D-RW cycles. The stress from the D-RW cycles may have increased the relative abundance of drought-tolerant bacteria, which altered the biofilm functions and thus indirectly affected the heavy metal adsorption capacity.

Plant–Microbe Interactions under the Action of Heavy Metals and under the Conditions of Flooding

Heavy metals and flooding are among the primary environmental factors affecting plants and microorganisms. This review separately considers the impact of heavy metal contamination of soils on microorganisms and plants, on plant and microbial biodiversity, and on plant–microorganism interactions. The use of beneficial microorganisms is considered one of the most promising methods of increasing stress tolerance since plant-associated microbes reduce metal accumulation, so the review focuses on plant–microorganism interactions and their practical application in phytoremediation. The impact of flooding as an adverse environmental factor is outlined. It has been shown that plants and bacteria under flooding conditions primarily suffer from a lack of oxygen and activation of anaerobic microflora. The combined effects of heavy metals and flooding on microorganisms and plants are also discussed. In conclusion, we summarize the combined effects of heavy metals and flooding on microorganisms and plants.

The soil pH and heavy metals revealed their impact on soil microbial community

Soil microbial community is the main indicator having a crucial role in the remediation of polluted soils. These microbes can alter soil pH, organic matter in soils (SOM), soil physic-chemical properties, and potential soil respiration rate via their enzymatic activities. Similarly, heavy metals also have a crucial role in soil enzymatic activities. For this purpose, a number of methods are studied to evaluate the impact of soil pH (a key factor in the formation of biogeographic microbial patterns in bacteria) on bacterial diversity. The effects of pH on microbial activity are glamorous but still unclear. Whereas, some studies also indicate that soil pH alone is not the single key player in the diversity of soil bacteria. Ecological stability is achieved in a pollution-free environment and pH value. The pH factor has a significant impact on the dynamics of microbes' communities. Here, we try to discuss factors that directly or indirectly affect soil pH and the impact of pH on microbial activity. It is also discussed the environmental factors that contribute to establishing a specific bacterial community structure that must be determined. From this, it can be concluded that the environmental impact on soil pH, reducing soil pH and interaction with this factor, and reducing the effect of soil pH on soil microbial community.

Stable and reusable acrylic ion-exchangers. From HMIs highly polluted tailing pond to safe and clean water

The application of several ion-exchange resins (IExR) with amino and amphoteric functionalities in batch retention of heavy metal ions (HMIs) (Cu(II), Fe(II), Mn(II), Zn(II)) from mono- and multicomponent simulated waters and from real polluted water collected from tailings pond of Tarnita (Suceava, Romania) sterile dump is deeply herein explored. The tested resins exhibited high sorption capacities, as evaluated by atomic absorption spectrometry, results supported by infrared spectroscopy, scanning electron microscopy and energy dispersive X-ray spectroscopy. The effect of pH on the IExR sorption capacity in competitive condition evidenced the optimum pH where IExR sorption efficiency is maximum. Reutilization of IExR in six consecutive sorption/desorption/regeneration cycles showed their renewable sorption properties. Wheat germination tests demonstrated that the Tarnita collected water had a high toxic effect whereas the resulted supernatant after batch sorption was nontoxic. The study shows that HMIs content after IExR sorption is under the admitted maximum level for surface water, and represents an important step on the efforts to solve the environmental problem in Tarnita area, by removing the main contaminants found in the local river water.

A Matter of Metals: Copper but Not Cadmium Affects the Microbial Alpha-Diversity of Soils and Sediments - a Meta-analysis

Heavy metal (HM) accumulation in soil affects plants and soil fauna, yet the effect on microbial alpha-diversity remains unclear, mainly due to the absence of dedicated research synthesis (e.g. meta-analysis). Here, we report the first meta-analysis of the response of soil microbial alpha-diversity to the experimental addition of cadmium (Cd) and copper (Cu). We considered studies conducted between 2013 and 2022 using DNA metabarcoding of bacterial and fungal communities to overcome limitations of other cultivation- and electrophoresis-based techniques. Fungi were discarded due to the limited study number (i.e. 6 studies). Bacterial studies resulted in 66 independent experiments reported in 32 primary papers from four continents. We found a negative dose-dependent response for Cu but not for Cd for bacterial alpha-diversity in the environments, only for Cu additions exceeding 29.6 mg kg^-1 (first loss of - 0.06% at 30 mg kg^-1). The maximal loss of bacterial alpha-diversity registered was 13.89% at 3837 mg kg^-1. Our results first highlight that bacterial communities behave differently to soil pollution depending on the metal. Secondly, our study suggests that even extreme doses of Cu do not cause a dramatic loss in alpha-diversity, highlighting how the behaviour of bacterial communities diverges from soil macro-organisms.

Mesoporous carbon decorated with MIL-100(Fe) as an electrochemical platform for ultrasensitive determination of trace cadmium and lead ions in surface water

In this work, MIL-100(Fe)-decorated mesoporous carbon powders (MC@MIL-100(Fe)) were prepared by in situ growth of MIL-100(Fe) on the surface of ZIF-8 framework-based mesoporous carbons (MC). The hybrid material was characterized using SEM equipped with EDS mapping for morphology investigation, X-ray photoelectron spectroscopy for chemical valence analysis, and X-ray diffraction for crystal structure determination. The developed sensor separated from the traditional bismuth film decoration, and simultaneously, MC@MIL-100(Fe) was applied for the first time to electrochemically detect trace amounts of Pb(II) and Cd(II). The fabricated MC@MIL-100(Fe)-based electrochemical sensor showed excellent response to the target analytes at -0.55 and - 0.75 V for lead and cadmium ions, respectively. By adjusting some measurement parameters, that is, the loading concentration of MC@MIL-100(Fe), acidity of the HAc-NaAc buffer (ABS), deposition potential, and deposition time, the analytical performance of the proposed electrochemical sensor was examined by exploring the calibration curve, repeatability, reproducibility, stability, and anti-interference under optimized conditions. The response current of the proposed MC@MIL-100(Fe) electrochemical sensor showed a well-defined linear relationship in the concentration ranges of 2-250 and 2-270 μg·L^-1 for Cd(II) and Pb(II), respectively. In addition, the detection limits of the sensor for Cd(II) and Pb(II) were 0.18 and 0.15 μg L^-1, respectively, which are well below the World Health Organization (WHO) drinking water guideline value. The MC@MIL-100(Fe) can be potentially used as an electrochemical platform for monitoring heavy metals in surface water, with satisfactory results.

Convolutional neural networks-based health risk modelling of some heavy metals in a soil-rice system

The long-term consumption of heavy metal-rich rice can cause serious harm to human health. However, the existing health risk assessment (HRA) can only be performed after the rice has been harvested, and this approach belongs to a passive and lagging pattern. This study is the first to explore the feasibility of health risk (HR) prediction by proposing the indirect model CNNHR-IND and the direct model CNNHR-DIR based on the convolutional neural network (CNN) technology. The dataset included 390 pairs of soil-rice samples collected from You County, China, with 17 environmental covariates. The R² values for CNNHR-IND for non-carcinogenic and carcinogenic risks were 0.578 and 0.554, respectively, and those for CNNHR-DIR were 0.647 and 0.574, respectively. The results demonstrated that both models performed well, especially CNNHR-DIR had a higher estimation accuracy. The spatial autocorrelation analysis indicated that CNNHR-DIR exerted no systematic bias in the prediction results for health risks, confirming the rationality of the CNNHR-DIR model. The sensitivity analysis further confirmed the generalizability and robustness of CNNHR-DIR. This study proved the feasibility of HR prediction and the potential of CNN technology in HRA, and is significant regarding early risk warnings of rice planting and the sustainable development of public health.

Effective removal of Pb(II) and Ni(II) ions by Bacillus cereus and Bacillus pumilus: An experimental and mechanistic approach

Herein, we report a bacteria-based strategy as an efficient, reasonable, benign, and promising methodology for remediating heavy metals fed waterbodies. The contemporary study deals with isolating, screening, and characterizing heavy metal resistive bacteria from metal-rich sites. The transcriptome analysis reveals the identity of the isolated species as Bacillus pumilus and Bacillus cereus. Batch studies put forth the bioremoval results in designed conditions of different pH, concentration, dose, and time. The mechanistic actions are drawn using complementary techniques such as Scanning Electron Microscopy (SEM) and Fourier Transform Infrared Spectroscopy (FTIR). The theory of surface adsorption of lead (Pb(II)) and nickel (Ni(II)) is further fostered by the application of adsorption isotherms. The conducted studies establish the bacterial morphological stratagems and multifarious biochemical approaches for countering metallic ions of Pb(II) and Ni(II). The exhibition of significant removal results by the isolated bacterial strains in simulated water samples with remarkable proliferation rates has opened up its favorability for industrial platforms.

Rhizosphere microbial community composition and survival strategies in oligotrophic and metal(loid) contaminated iron tailings areas

In this study, the metal(loid) fractions in two alkaline iron tailings areas with similar physico-chemical properties and the enrichment ability of dominant plants in these areas were investigated. Additionally, high-throughput sequencing and metagenome analysis were used to examine the rhizosphere microbial community structures and their strategies and potential for carbon fixation, nitrogen metabolism, and metal(loid) resistance in mining areas. Results showed that Salsola collina, Setaria viridis, and Xanthium sibiricum have strong enrichment capacity for As, and the maximum transport factor for Mn can reach 4.01. The richness and diversity of bacteria were the highest in rhizosphere tailings, and the dominant phyla were Proteobacteria, Actinobacteria, Ascomycota, and Thaumarchaeota. The key taxa present in rhizosphere tailings were generally metal(loid) resistant, especially Sphingomonas, Pseudomonas, Nocardioides, and Microbacterium. The reductive citrate cycle was the main carbon fixation pathway of microorganisms in tailings. Rhizosphere microorganisms have evolved a series of survival strategies and can adapt to oligotrophic and metal(loid) polluted mining environments. The results of this study provide a basis for the potential application of plant-microbial in situ remediation of alkaline tailings.

Integrative chemical and omics analyses reveal copper biosorption and tolerance mechanisms of Bacillus cereus strain T6

A comprehensive understanding of the cellular response of microbes to metal stress is necessary for the rational development of microbe-based biosorbents for metal removal. The present study investigated the copper (Cu) sorption and resistance mechanism of Bacillus cereus strain T6, a newly isolated Cu-resistant bacterium, by integrative analyses of physiochemistry, genomics, transcriptomics, and metabolomics. The growth inhibition assay and biosorption determination showed that this bacterium exhibited high tolerance to Cu, with a minimum inhibitory concentration of 4.0 mM, and accumulated Cu by both extracellular adsorption and intracellular binding. SEM microscopic images and FTIR spectra showed significant cellular surface changes at the high Cu level but not at low, and the involvement of surface functional groups in the biosorption of Cu, respectively. Transcriptomic and untargeted metabolomic analyses detected 362 differentially expressed genes and 60 significantly altered metabolites, respectively. Integrative omics analyses revealed that Cu exposure dramatically induced a broad spectrum of genes involved in Cu transport and iron homeostasis, and suppressed the denitrification pathway, leading to significant accumulation of metabolites for metal transporter synthesis, membrane remolding, and antioxidant activities. The results presented here provide a new perspective on the intricate regulatory network of Cu homeostasis in bacteria.

A field study to estimate heavy metal concentrations in a soil-rice system: Application of graph neural networks

Accurate prediction of the concentration of heavy metals is of great significance for assessing the quality of agricultural products and reducing health risks. However, the complexity and interconnectivity of the farmland ecosystem restricts the improvement of the prediction accuracy of traditional methods. This research explored the application potential of graph neural network (GNN) technology, which can extract and learn information in large-scale networks in detail, in the field of heavy metal prediction for the first time. In this study, a heavy metal prediction model for rice, CoNet-GNN, was proposed with 17 environmental factors as input variables using the co-occurrence network and GNN. Experimental results using a dataset from a field study showed that the R² of CoNet-GNN for predicting Cd, Pb, Cr, As, and Hg had outstanding values of 0.872, 0.711, 0.683, 0.489, and 0.824, respectively. Sensitivity analysis further indicated that CoNet-GNN had good stability and robustness. Compared with random forest, gradient boosting, and multilayer perceptron, CoNet-GNN made a remarkable improvement to the prediction accuracy of all studied heavy metals. Therefore, CoNet-GNN can effectively simulate the rich relationships and laws between various factors in the soil-rice system and effectively characterize the influence diffusion path. Furthermore, it provides new ideas for heavy metal prediction based on network research methods and expands the technical scope of heavy metal evaluation.

Drying and rewetting induce changes in biofilm characteristics and the subsequent release of metal ions

Drying and rewetting can markedly influence the microbial structure and function of river biofilm communities and potentially result in the release of metal ions from biofilms containing metals. However, little information is available on the response of metal-enriched biofilms to drying and rewetting over time. In this study, natural biofilms were allowed to develop in four rotating annular bioreactors for 2-11 weeks, followed by drying for 5 days and rewetting for another 5 days. Subsequently, we assessed Zn, Cd, and As desorption from the biofilms and other related parameters (microbial community structure, biofilm morphology, enzyme activity, and surface components as well as characteristics). High-throughput sequencing of the 16 S rRNA gene and confocal laser scanning microscopy revealed that the biofilm architecture and bacterial communities were distinct in different growth phases and under drying and rewetting conditions (permutational multivariate analysis of variance; p = 0.001). Proteobacteria was the dominant bacterial phylum, accounting for 69.7-90.1% of the total content. Kinetic experiments revealed that the drying and rewetting process increased metal desorption from the biofilm matrix. The desorption of heavy metals was affected by the age of the biofilm, with the maximum amount of metal ions released from 2-week-old biofilms (one-way ANOVA, Zn: p < 0.001; Cd: p = 0.008; As: p < 0.001). The modifications in biofilm properties and decreased diversity of the bacterial community (paired t-test, p < 0.05) after drying and rewetting decreased the number of specific binding sites for metal ions. In addition, negatively charged arsenate and other anions in the liquid phase could compete with As ions for adsorption sites to promote the release of As(V) and/or reductive desorption of As(III). The results of this study and their interpretation are expected to help refine the behaviors of heavy metals in the aquatic environment.

Inhibition of cadmium uptake by wheat with urease-producing bacteria combined with sheep manure under field conditions

In heavy metal-contaminated farmland, microorganisms or organic fertilizers can be used to minimize heavy metal uptake by crops to ensure food safety. However, the mechanisms by which urease-producing and metal-immobilizing bacteria combined with manure inhibit Cd uptake in wheat (Triticum aestivum L.) remain unclear. Herein, the effects of Enterobacter bugandensis TJ6, sheep manure (SM), and TJ6 combined with SM on Cd uptake by wheat and the mechanisms involved were investigated under field conditions. The results showed that strain TJ6 increased the urease activity and the proportion of strains with a high Cd adsorption capacity in SM, thereby enhancing the Cd adsorption capacity of SM in solution. Strain TJ6 combined with SM improved the rhizosphere soil urease activity, NH₄⁺/NO₃^- ratio, and pH, thus reducing the Cd content (75.9%) in wheat grain. In addition, TJ6+SM reduced the bacterial community diversity but shifted the structure of the bacterial community in rhizosphere soil. Interestingly, the relative abundances of urease-producing bacteria and metal-immobilizing bacteria (Enterobacter, Bacillus, Exiguobacterium, Rhizobium, and Serratia) in rhizosphere soil were enriched, which enhanced wheat resistance to Cd toxicity. These results showed that urease-producing and metal-immobilizing bacteria combined with sheep manure can inhibit the uptake of Cd by wheat.

Variation and factors on heavy metal speciation during co-composting of rural sewage sludge and typical rural organic solid waste

In this study, a co-composting of rural organic solid waste (rural sewage sludge, kitchen waste and corn stalks) was conducted to analyze the variation of heavy metals (As, Cu, Cr, Ni, Pb, Hg, and Zn) and their major influencing factors. During composting, significant changes were observed in the total contents of heavy metals (p < 0.01): the total concentrations of As, Cu, Hg, Pb and Zn increased by 7.5%, 54.1%, 26.3%, 15.8%, and 34.2%, whereas that of Cr and Ni decreased by 71.3% and 33.4%, respectively. Heavy metals were mainly bound to the oxidizable and residual fractions. Spearman and Redundancy analysis (RDA) indicated that substances were significantly correlated with the changes in speciation of heavy metals, among all the factors, while pH and temperature were the dominating environmental influencing parameters. Several metal-resistant bacterial genera (Pseudomonas, Paenibacillus, Bacillus, Acinetobacter, Desulfovibrio, and Ochrobactrum, etc) were observed, with significant explanatory capacity for the changes in heavy metals. Composting showed a poor effect on heavy metal passivation, except for that of As. After composting, the heavy metal contents were consistent with the application standards. The evaluation of potential ecological risk showed a high cumulative ecological risk (336.9) of heavy metals. This study provides technical support and practical information for the disposal and safe recycling for rural organic solid waste.

Microbial response and adaption to thallium contamination in soil profiles

Thallium (Tl) is a trace metal with high toxicity. Comprehensive investigation of spatial distribution of Tl and microorganism is still limited in soils from mining area. In this study, 16S rRNA sequencing and network analysis were used for deciphering the co-occurrence patterns of bacterial communities in two different types of soil profiles around a typical Tl-bearing pyrite mine. The results showed that geochemical parameters (such as pH, S, Tl, Fe and TOM) were the driving forces for shaping the vertical distribution of microbial community. According to network analysis, a wide diversity of microbial modules were present in both soil profiles and affected by depth, significantly associated with variations in Tl geochemical fractionation. Phylogenetic information further unveiled that the microbial modules were mainly dominated by Fe reducing bacteria (FeRB), Fe oxidizing bacteria (FeOB), S oxidizing bacteria and Mn reducing bacteria. The results of metagenome indicated that Fe, Mn and S cycle in soil are closely involved in the biogeochemical cycle of Tl. The findings of co-occurrence patterns in the bacterial network and correlation between microorganisms and different geochemical fractions of Tl may benefit the strategy of bioremediation of Tl-contaminated soils with indigenous microbes.

Benefits to Performance and Well-Being of Nature-Based Exercise: A Critical Systematic Review and Meta-Analysis

Prior reviews point to the superior benefits of exercising in nature vs in conventional indoor venues, particularly in terms of well-being. However, physical exercise performance, neither in terms of efficacy nor efficiency, has not been sufficiently addressed by past reviews of this topic. Therefore, we conducted both a systematic review and meta-analysis of the experimental literature that relates to differences in exercise performance and well-being between exercising in nature and in conventional indoor venues. Forty-nine relevant studies─the outcome data of which were used for the systematic review─were located within the Web of Science, PubMed, and Scopus databases. The meta-analyses, using data from twenty-four of the relevant studies, revealed no significant overall environmental effect on task performance efficacy outcomes (p = 0.100). For nature-based exercise, however, marginally positive cognitive performance outcomes (p = 0.059), lower ratings of perceived exhaustion (p = 0.001), and higher levels of vigor (p = 0.017) were observed, indicating higher performance efficiency. As for the effects of environment on well-being, positive affect was significantly higher for nature-based exercise (p = 0.000), while perceived stress was significantly higher for indoor exercise (p = 0.032). These results must, however, be interpreted with caution. High levels of bias and between-study heterogeneity were observed. Nonetheless, given several noticeable trends in the results, it may be that exercising in nature enhances the efficiency of exercise task performance to a greater extent than does indoor exercise.

Responses of heavy metals mobility and resistant bacteria to adding time of activated carbon during chicken manure composting

With the wide application of compost in agriculture, heavy metals (HMs) continue to accumulate in the soil environment, which poses a great threat to the health of the soil environment. Therefore, it is critical for effectively reduce the mobility of HMs. In this study, the influence of activated carbon (AC) addition time on mobility of HMs (Cu, Zn and Pb) and HMs resistant bacteria structure were evaluated during chicken manure composting. The result showed that the addition of AC in the thermophilic period could effectively reduce the mobility of HMs. Subsequently, high-throughput sequencing results showed that the dominant phyla were Proteobacteria, Firmicutes, Actinbacteria, Deinococcus-Thermus, Chloroflexi, Gemmatimonadetes and Bacteroidetes within the sample, which were ubiquitous and abundant in composting. The Redundancy analysis (RDA) results indicated that the mobility of HMs (Cu, Zn and Pb) by superior bacteria fate varied in AC amendment composting. Ultimately, a regulation method is proposed to influence the mobility of HMs by regulating the bacteria community in the AC compost. Our current studies suggest that the addition of AC during compost preparation (thermophilic period) is an effective strategy in regulating the mobility (bioavailability) of HMs, thereby significantly reducing environmental pollution problems.

Pig lung fibrosis is active in the subacute CdCl2 exposure model and exerts cumulative toxicity through the M1/M2 imbalance

Environmental pollutant cadmium (Cd) can cause macrophage dysfunction, and the imbalance of M1/M2 is involved in the process of tissue fibrosis. In order to explore the effect of subacute CdCl₂ exposure on pig lung tissue fibers and its mechanism, based on the establishment of this model, ICP-MS, H&E staining, Masson staining, Immunofluorescence, RT-PCR, and Western Blot methods were used to detect related indicators. The results found that lung tissue fibrosis, Cd content significantly increased, lung tissue ion disturbance, miR-20a-3p down-regulation, M1/M2 imbalance, LXA4/FPR2 content decreased, MDA content increased, NF-κB/NLRP3, TGFβ pathway, PPARγ/Wnt pathway activated, and the expression of fibrosis-related factors increased. The above results indicate that subacute CdCl₂ exposure increase Cd content in the pig lungs, which leads to M1/M2 imbalance and down-regulates the content of LXA4/FPR2, further activates the oxidative stress/NF-κB/NLRP3 pathway, thereby activating the TGFβ and PPARγ/Wnt pathways to induce fibrosis. This study aims to reveal the toxic effects of CdCl₂ and will provide new insights into the toxicology of Cd.

Variable metal resistance of P. putida CZ1 biofilms in different environments suggests its remediation application scope

Pseudomonas putida is potentially used in the bioremediation of heavy metals (HMs). Its response to different HMs in different environments is still not fully understood. This study investigated resistance against 12 kinds of metals by P. putida CZ1 planktonic cells and its biofilm in LB and mineral medium (MM). P. putida CZ1 biofilms have high resistance and accumulation capacity for Cu²⁺, Zn²⁺, Pb²⁺, Fe³⁺, Mn²⁺, Al³⁺ and Ni²⁺, but less resistance to Co²⁺, Cd²⁺, Cr₂O₇^2-, Ag⁺ and Hg²⁺. Biofilms were 2-8 times more resistant to Cu²⁺ and Zn²⁺ than planktonic cells. There was a strong correlation between the P content and the accumulation of Cu²⁺, Zn²⁺, Fe³⁺, Mn²⁺, Pb²⁺, Ni²⁺and Al³⁺ respectively. Confocal laser scanning microscopy (CLSM) combined with live/dead staining study found that cells in the biofilms can keep viable after 36 h under MIC of Cu²⁺ or Zn²⁺ both in LB and MM. When the metal concentration increased, cells can be killed gradually. For Cu²⁺, Zn²⁺, Fe³⁺, Mn²⁺, Pb²⁺ and Ni²⁺, higher resistance was found in MM (2-4 times higher) than in LB and higher accumulation of these metals were also found in MM. P. putida CZ1 biofilm cultured in MM with citric acid as carbon source had stronger resistance and accumulation ability to Cu²⁺, Zn²⁺, Pb²⁺, Fe³⁺, Mn²⁺, and Ni²⁺. This suggested that P. putida CZ1 had greater remediation potential for these metals in organic acid rich environments.

Dynamics of Soil Microbial N-Cycling Strategies in Response to Cadmium Stress

Globally increasing trace metal contamination of soils requires a better mechanistic understanding of metal-stress impacts on microbially mediated nutrient cycling. Herein, a 5-month laboratory experiment was employed to assess the effects of cadmium (Cd) on soil microbial N-cycling processes and associated functional gene abundance, with and without urea amendment. In non-N-amended soils, Cd progressively stimulated microbial populations for N acquisition from initial dissolved organic N (DON) to later recalcitrant organic N. The acceleration of N catabolism was synchronously coupled with C catabolism resulting in increased CO₂/N₂O fluxes and adenosine triphosphate (ATP) contents. The abundance of microbes deemed inefficient in N catabolism was gradually repressed after an initial stimulation period. We posit that enhanced exergonic N processes diminished the need for endergonic activities as a survival strategy for N communities experiencing metal stress. With urea amendment, Cd exhibited an initial stimulation effect on soil nitrification and a later a promotion effect on mineralization, along with an increase in the associated microbial populations. In N-amended soils, Cd accelerated N/C transformation processes, but decreased N₂O and CO₂ fluxes by 19 and 14%, respectively. This implies that under eutrophic conditions, Cd synchronously altered microbial C/N metabolism from a dominance of catabolic to anabolic processes. These results infer a nutrient-based adjustment of microbial N-cycling strategies to enhance their metal resistance.

Patterns of heavy metal resistant bacterial community succession influenced by biochar amendment during poultry manure composting

The purpose of this study was to investigate the heavy metal resistant bacteria (HMRB) community succession and bacterial activity in poultry manure (PM) composting. Five different concentration of chicken manure biochar (CMB) at 0%, 2%, 4%, 6%, and 10% on a dry weight basis was applied with initial feedstock (poultry manure + wheat straw) and indicated with T1, T2, T3, T4, and T5. In addition, high-throughput sequencing, principal coordinate analysis, and correlation analysis were used to analyze the evolution of HMRB communities during composting. The study indicated that crucial phyla were Proteobacteria, Actinobacteria, Bacteroidetes, and Firmicutes. The bacterial diversity in the CMB amendment treatment was higher than in the control treatment, and T4 treatment has the highest among all CMB applied treatments. Moreover, results from CCA indicated that T4 and T5 treatments quickly enters the high-temperature period which is maintained for 5 days, and is significantly positively correlated with Proteobacteria, and Actinobacteria. These findings offer insight into potential strategies to understand the succession of HMRBs during PM reuse. Overall, the above results show the addition of 6% biochar (T4) was potentially beneficial to enrich the abundance of bacterial community to improve composting environment quality and composting efficiency. In addition, effective to immobilized the heavy metals and HMRB in the end product.

Pollution control in biochar-driven clean composting: Emphasize on heavy metal passivation and gaseous emissions mitigation

Present study was focus on the pollution control aspect of gaseous mitigation and heavy metal passivation as well as their associated bacterial communities driven by apple tree branch biochar (BB) during sheep manure composting. Six treatment was performed with distinct concentration of BB from 0%, 2.5%, 5%, 7.5%, 10%, and 12.5% as T1 to T6. Compared with compost without additive, biochar-based composting recorded faster thermophilic process (4thd) and longer duration (12-14d), lower gaseous emission in terms of ammonia (5.37-10.29 g), nitrous oxide (0.12-0.47 g) and methane (4.38-30.29 g). Notably highest temperature (65.3 ℃) and active thermophilic duration (14d), minimized gaseous volatilization were detected in 10%BB composting. Aspect of non-degradability and enrichment-concentration properties of heavy metals, the total copper (Cu) and zinc (Zn) were increased (from initial 12.71-17.91 to final 16.36-29.36 mg/kg and 107.39-146.58-161.48-211.91 mg/kg). In view of available diethylene triamine pentacetic acid (DTPA) extractable form, DTPA-Cu and DTPA-Zn from 4.29 to 6.57 and 31.66-39.32 mg/kg decreased to 3.75-4.82 and 23.43-40.54 mg/kg, especially the maximized passivation rate of 46.95% and 56.27% were present in 10%BB composting. Additionally, bacterial diversity of biochar-based composting was increased (1817-2310 OTUs) than control (1686 OTUs) and dominant by Firmicutes (52.75%), Bacteroidetes (28.41%) and Actinobacteriota (13.98%). Validated 10% biochar-based composting is the optimal option for effectively control environmental pollution to obtain hygienic composting.

Synchrotron Radiation-Fourier Transformed Infrared microspectroscopy (μSR-FTIR) reveals multiple metabolism alterations in microalgae induced by cadmium and mercury

Toxic metals such as cadmium (Cd) and mercury (Hg) represent a threat to photosynthetic organisms of polluted aquatic ecosystems, and knowledge about mechanisms of toxicity is essential for appropriate assessment of environmental risks. We used Synchrotron Radiation-Fourier Transformed Infrared microspectroscopy (μSR-FTIR) to characterise major changes of biomolecules caused by Cd and Hg in the model green microalga Chlamydomonas reinhardtii. μSR-FTIR showed several metabolic alterations in different biochemical groups such as carbohydrates, proteins, and lipids in a time-dose dependent manner, with the strongest changes occurring at concentrations above 10 μM Cd and 15 μM Hg after short-term (24 h) treatments. This occurred in a context where metals triggered intracellular oxidative stress and chloroplast damage, along with autophagy induction by overexpressing AUTOPHAGY-RELATED PROTEIN 8 (ATG8). Thin layer chromatography analysis confirmed that toxic metals promoted remarkable changes in lipid profile, with higher degree of esterified fatty acid unsaturation as detected by gas chromatography coupled with mass spectrometry. Under Cd stress, there was specifically higher unsaturation of free fatty acids, while Hg led to stronger unsaturation in monogalactosyldiacylglycerol. μSR-FTIR spectroscopy proved as a valuable tool to identify biochemical alterations in microalgae, information that could be exploited to optimise approaches for metal decontamination.

Prediction of the sorption efficiency of heavy metal onto biochar using a robust combination of fuzzy C-means clustering and back-propagation neural network

Heavy metal adsorption onto biochar is an effective method for the treatment of the heavy metal contamination of water and wastewater. This study aims to evaluate the heavy metals sorption efficiency of different biochar characteristics and propose a novel intelligence method for predicting the sorption efficiency of heavy metal onto biochar with high accuracy based on the back-propagation neural network (BPNN) and fuzzy C-means clustering algorithm (FCM), named as FCM-BPNN. Accordingly, the FCM algorithm was used to simulate the properties of metal adsorption data and divide them into clusters with similar features. The clustering results showed that the FCM algorithm simulated metal adsorption data's properties very well and classified them based on biochar characteristics and adsorption conditions. Afterward, BPNN models were well-developed based on these clusters, and their outcomes were then combined (i.e., FCM-BPNN). The results indicated that the FCM-BPNN model could predict heavy metal's sorption efficiency onto biochar with a promising result (i.e., RMSE of 0.036, R² of 0.987, RSE of 0.006, MAPE of 0.706, and VAF of 98.724). Whereas the BPNN model, without optimizing the FCM algorithm, was proved with lower performance (RMSE = 0.050, R² = 0.977, RSE = 0.011, MAPE = 0.802, and VAF = 97.662). These findings revealed that the FCM algorithm's presence impressively improved the BPNN model's accomplishment in predicting heavy metal's sorption efficiency onto biochar, and the proposed FCM-BPNN model can improve water/wastewater treatment plants' quality and provide a more efficient process for heavy metals with performance superiority.

Stabilization of lead in polluted sediment based on an eco-friendly amendment strategy: Microenvironment response mechanism

Stabilization is the most important remediation mechanisms for sediment polluted heavy metals. However, little research has been done on the identification of microenvironmental response and internal correlation, as well as synergistic mechanisms during heavy metal remediation. This study aims to investigate the inner response mechanisms of microenvironment after the lead (Pb) are gradually stabilized in sediment. An eco-friendly amendment strategy which firstly used 100% biodegradable sophorolipids (SOP) to modify chlorapatite (ClAP) for the fabrication of SOP@nClAP was applied in this study. The stabilization efficiency of Pb was significantly improved by SOP@nClAP compared with ClAP. Most importantly, the high-throughput sequencing showed that the dominant species in the sediment changed with the stabilization of Pb. The decrease of Proteobacteria and increase of Firmicutes, especially the Sedimentibacter within the phylum Firmicute directly suggested that large amounts of Pb were stabilized. This research is not only devoted to stabilize Pb in sediment by eco-friendly amendment strategy, but also keep a watchful eye on microenvironment response mechanisms during the Pb stabilization in sediment. Therefore, this study lays a foundation for the future application of more heavy metal amendment strategies in the sediment environment and improves the possibility of large-scale site amendment.

Metagenomic sequencing reveals detoxifying and tolerant functional genes in predominant bacteria assist Metaphire guillelmi adapt to soil vanadium exposure

Due to extensive vanadium (V) mining and processing, an increasing amount of V has accumulated in soil, which poses a threat to public health. Consequently, we used earthworm (Metaphire guillelmi) incubation trials in V-contaminated soil (0-300 mg kg^-1) to explore the response of soil indigenous bacteria and earthworm intestinal bacteria to V stress. Metagenomic analysis revealed that V exposure changed the bacterial composition in the soil and the worm gut. However, although the core species varied between soil and worm gut, the two systems shared the predominant bacteria, including Staphylococcus, Nocardioides, Streptococcus, and Nitrosopumilales. Two functional genotypes were detected in the shared core species, i.e., reductive genes and resistant genes. The reductive genes mainly consisted of those involved in glutathione, cysteine, methionine, sulfur, and nitrogen metabolisms. The resistant genes included those encoding the oxidation damage repair system, the outer membrane protein, the antioxidant enzyme system, the metal-binding, and the heavy-metal efflux. Therefore, the shared core species exert a comprehensive strategy to survive V stress involving the alliance of heavy metal detoxifying and tolerant genes. This study provides novel information about the detoxification mechanisms of bacterial populations in soil and worm gut to survive V stress.

How sediment bacterial community shifts along the urban river located in mining city

Bacterial communities play critical roles in biogeochemical cycles and serve as sensitive indicators of environmental fluctuation. However, the influence of mineral resource exploitation on shaping the bacterial communities in the urban river is still ambiguous. In this study, high-throughput sequencing was used to determine the spatial distribution of the sediment bacterial communities along an urban river in the famous mining city Panzhihua of China. The results showed that mineral resource exploitation had a significant impact on the urban river bacterial community structure but not on the bacterial ecological functions. Distinct families of bacteria often associated with nutrients (i.e., Comamonadaceae and Sphingomonadaceae) and metal contaminants (i.e., Rhodobacteraceae) were more predominant in the residential and mining area, respectively. Relative to dispersal dynamics, environmentally induced species sorting may primarily influence bacterial community structure. Heavy metals and sediment physicochemical properties had both similar and significant influence on shaping bacterial community structure. Among heavy metals, essential metal elements explained more rates of bacterial variation than toxic metals at moderate contaminant levels. Moreover, the bacteria with multiple metal resistances identified in culture-dependent experiments were probably not suitable for indicating heavy metal contamination in field research. Thus, several sensitive bacterial genera such as Rhodobacter, Hylemonella, and Dechloromonas were identified as potential bioindicators to monitor metals (iron and titanium) and nutrients (phosphorus and organic carbon) in the river ecosystem of the Panzhihua region. Together, these results profiled the coupling effect of urbanization and mineral resource utilization on shaping sediment bacterial communities in urban rivers.

Mechanisms of Enterobacter bugandensis TJ6 immobilization of heavy metals and inhibition of Cd and Pb uptake by wheat based on metabolomics and proteomics

Microbial passivation remediation of heavy metal-contaminated farmland has attracted increasing attention. However, the molecular mechanism by which heavy metal-immobilizing bacteria inhibit the uptake of Cd and Pb by wheat is not clear. Herein, a heavy metal-immobilizing bacterium, Enterobacter bugandensis TJ6, was used to reveal its immobilization mechanisms of Cd and Pb and inhibition of Cd and Pb uptake by wheat using metabolomics and proteomics. Compared with the control, strain TJ6 significantly reduced (44.7%-56.6%) the Cd and Pb contents of wheat roots and leaves. Strain TJ6 reduced the Cd and Pb concentrations by adsorption, intracellular accumulation, and bioprecipitation in solution. Untargeted metabolomics showed that strain TJ6 produced indole-3-acetic acid (IAA), betaine, and arginine under Cd and Pb stress, significantly improving the resistance of strain TJ6 and wheat to Cd and Pb. Label-free proteomics showed that 143 proteins were upregulated and 61 proteins were downregulated in wheat roots in the presence of strain TJ6. The GO items of the differentially expressed proteins (DEPs) involved in protein-DNA complexes, DNA packaging complexes, and peroxidase activity were enriched. In addition, the ability of wheat roots to synthesize abscisic acid and jasmonic acid was improved. In conclusion, strain TJ6 reduced Cd and Pb uptake in wheat through its own adsorption of Cd and Pb and regulation of wheat root DNA repair ability, plant hormone levels, and antioxidant activities. These results provide new insights and a theoretical basis for the application of heavy metal-immobilizing bacteria in safe wheat production.

Heavy metals passivation driven by the interaction of organic fractions and functional bacteria during biochar/montmorillonite-amended composting

The aim of this study was to identify critical driving factors and pathways of mitigating heavy metals (HM) bioavailability during biochar/montmorillonite-amended composting: emphasize on the interaction effect between organic constituents and functional bacteria. Organic components, such as humus (HS), humic (HA) and fulvic acid (FA) and dissolved organic carbon (DOC), exhibited indivisible links with Cu and Zn speciation, which confirmed their vital roles on deactivating Cu and Zn. Network analysis indicated that biochar/montmorillonite obviously increased the diversity of Cu resistant/actor and Zn actor bacteria, which aided in HM passivation. Although multiple pathways were involved in regulating Cu/Zn passivation, the interaction of bacteria and organic constituents was the most critical driving factor. Given that, promoting potential HM resistant/actor bacteria utilizing and transforming low-humification organic fractions coupling with elevating high-humification constituents were the optimal pathway. This study is helpful to practical application of biochar/montmorillonite to inactivate HM for industrial composting.

Can biochar regulate the fate of heavy metals (Cu and Zn) resistant bacteria community during the poultry manure composting?

In this study, the influence of coconut shell biochar addition (CSB) on heavy metals (Cu and Zn) resistance bacterial fate and there correlation with physicochemical parameters were evaluated during poultry manure composting. High-throughput sequencing was carried out on five treatments, namely T1-T5, where T2 to T5 were supplemented with 2.5%, 5%, 7.5% and 10% CSB, while T1 was used as control for the comparison. The results of HMRB indicated that the relative abundance of major potential bacterial host altered were Firmicutes (52.88-14.32%), Actinobacteria (35.20-4.99%), Bacteroidetes (0.05-15.07%) and Proteobacteria (0.01-20.28%) with elevated biochar concentration (0%-10%). Beta and alpha diversity as well as network analysis illustrated composting micro-environmental ecology with exogenous additive biochar to remarkably affect the dominant resistant bacterial community distribution by adjusting the interacting between driving environmental parameters with potential host bacterial in composting. Ultimately, the amendment of 7.5% CSB into poultry manure composting was able to significantly reduce the HMRB abundance, improve the composting efficiency and end product quality.