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Hill RC, Oman TJ, Wang X, Shan G, Schafer B, Herman RA, Tobias R, Shippar J, Malayappan B, Sheng L, Xu A, Bradshaw J. Development, Validation, and Interlaboratory Evaluation of a Quantitative Multiplexing Method To Assess Levels of Ten Endogenous Allergens in Soybean Seed and Its Application to Field Trials Spanning Three Growing Seasons. JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY 2017; 65:5531-5544. [PMID: 28635260 DOI: 10.1021/acs.jafc.7b01018] [Citation(s) in RCA: 15] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/16/2023]
Abstract
As part of the regulatory approval process in Europe, comparison of endogenous soybean allergen levels between genetically engineered (GE) and non-GE plants has been requested. A quantitative multiplex analytical method using tandem mass spectrometry was developed and validated to measure 10 potential soybean allergens from soybean seed. The analytical method was implemented at six laboratories to demonstrate the robustness of the method and further applied to three soybean field studies across multiple growing seasons (including 21 non-GE soybean varieties) to assess the natural variation of allergen levels. The results show environmental factors contribute more than genetic factors to the large variation in allergen abundance (2- to 50-fold between environmental replicates) as well as a large contribution of Gly m 5 and Gly m 6 to the total allergen profile, calling into question the scientific rational for measurement of endogenous allergen levels between GE and non-GE varieties in the safety assessment.
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Affiliation(s)
- Ryan C Hill
- Dow AgroSciences LLC , 9330 Zionsville Road, Indianapolis, Indiana 46268, United States
| | - Trent J Oman
- Dow AgroSciences LLC , 9330 Zionsville Road, Indianapolis, Indiana 46268, United States
| | - Xiujuan Wang
- Dow AgroSciences LLC , 9330 Zionsville Road, Indianapolis, Indiana 46268, United States
| | - Guomin Shan
- Dow AgroSciences LLC , 9330 Zionsville Road, Indianapolis, Indiana 46268, United States
| | - Barry Schafer
- Dow AgroSciences LLC , 9330 Zionsville Road, Indianapolis, Indiana 46268, United States
| | - Rod A Herman
- Dow AgroSciences LLC , 9330 Zionsville Road, Indianapolis, Indiana 46268, United States
| | - Rowel Tobias
- EAG Laboratories , 4780 Discovery Drive, Columbia, Missouri 65201, United States
| | - Jeff Shippar
- Covance Laboratories , 3301 Kinsman Blvd., Madison, Wisconsin 53704, United States
| | - Bhaskar Malayappan
- Critical Path Services LLC , 3070 McCann Farm Drive, Garnet Valley, Pennsylvania 19060, United States
| | - Li Sheng
- EPL Bioanalytical Services , 9095 W. Harristown Blvd, Niantic, Illinois 62551, United States
| | - Austin Xu
- Primera Analytical Solutions , 259 Wall Street, Princeton, New Jersey 08540, United States
| | - Jason Bradshaw
- Pyxant Laboratories , 4720 Forge Road #106, Colorado Springs, Colorado 80907, United States
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Geng T, Stojšin D, Liu K, Schaalje B, Postin C, Ward J, Wang Y, Liu ZL, Li B, Glenn K. Natural Variability of Allergen Levels in Conventional Soybeans: Assessing Variation across North and South America from Five Production Years. JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY 2017; 65:463-472. [PMID: 27997188 DOI: 10.1021/acs.jafc.6b04542] [Citation(s) in RCA: 15] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/06/2023]
Abstract
Soybean (Glycine max L. Merrill) is one of eight major allergenic foods with endogenous proteins identified as allergens. To better understand the natural variability of five soybean allergens (Gly m 4, Gly m 5, Gly m 6, Gly m Bd 28k, and Gly m Bd 30k), validated enzyme-linked immunosorbent assays (ELISAs) were developed. These ELISAs measured allergens in 604 soybean samples collected from locations in North and South America over five growing seasons (2009-2013/2014) and including 37 conventional varieties. Levels of these five allergens varied 5-19-fold. Multivariate statistical analyses and pairwise comparisons show that environmental factors have a larger effect on allergen levels than genetic factors. Therefore, from year to year, consumers are exposed to highly variable levels of allergens in soy-based foods, bringing into question whether quantitative comparison of endogenous allergen levels of new genetically modified soybean adds meaningful information to their overall safety risk assessment.
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Affiliation(s)
- Tao Geng
- Monsanto Company, 800 North Lindbergh Boulevard, St. Louis, Missouri 63167, United States
| | - Duška Stojšin
- Monsanto Company, 800 North Lindbergh Boulevard, St. Louis, Missouri 63167, United States
| | - Kang Liu
- Monsanto Company, 800 North Lindbergh Boulevard, St. Louis, Missouri 63167, United States
| | - Bruce Schaalje
- Monsanto Company, 800 North Lindbergh Boulevard, St. Louis, Missouri 63167, United States
| | - Cody Postin
- Monsanto Company, 800 North Lindbergh Boulevard, St. Louis, Missouri 63167, United States
| | - Jason Ward
- Monsanto Company, 800 North Lindbergh Boulevard, St. Louis, Missouri 63167, United States
| | - Yongcheng Wang
- Monsanto Company, 800 North Lindbergh Boulevard, St. Louis, Missouri 63167, United States
| | - Zi Lucy Liu
- Monsanto Company, 800 North Lindbergh Boulevard, St. Louis, Missouri 63167, United States
| | - Bin Li
- Monsanto Company, 800 North Lindbergh Boulevard, St. Louis, Missouri 63167, United States
| | - Kevin Glenn
- Monsanto Company, 800 North Lindbergh Boulevard, St. Louis, Missouri 63167, United States
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Koch MS, DeSesso JM, Williams AL, Michalek S, Hammond B. Adaptation of the ToxRTool to Assess the Reliability of Toxicology Studies Conducted with Genetically Modified Crops and Implications for Future Safety Testing. Crit Rev Food Sci Nutr 2016; 56:512-26. [PMID: 25208336 DOI: 10.1080/10408398.2013.788994] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/22/2022]
Abstract
To determine the reliability of food safety studies carried out in rodents with genetically modified (GM) crops, a Food Safety Study Reliability Tool (FSSRTool) was adapted from the European Centre for the Validation of Alternative Methods' (ECVAM) ToxRTool. Reliability was defined as the inherent quality of the study with regard to use of standardized testing methodology, full documentation of experimental procedures and results, and the plausibility of the findings. Codex guidelines for GM crop safety evaluations indicate toxicology studies are not needed when comparability of the GM crop to its conventional counterpart has been demonstrated. This guidance notwithstanding, animal feeding studies have routinely been conducted with GM crops, but their conclusions on safety are not always consistent. To accurately evaluate potential risks from GM crops, risk assessors need clearly interpretable results from reliable studies. The development of the FSSRTool, which provides the user with a means of assessing the reliability of a toxicology study to inform risk assessment, is discussed. Its application to the body of literature on GM crop food safety studies demonstrates that reliable studies report no toxicologically relevant differences between rodents fed GM crops or their non-GM comparators.
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Affiliation(s)
- Michael S Koch
- a Monsanto Company, Product Safety Center , St. Louis , Missouri , USA
| | | | | | - Suzanne Michalek
- c Department of Microbiology, University of Alabama at Birmingham , Birmingham , Alabama , USA
| | - Bruce Hammond
- a Monsanto Company, Product Safety Center , St. Louis , Missouri , USA
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Kim MS, Baek SA, Park SY, Baek SH, Lee SM, Ha SH, Lee YT, Choi J, Im KH, Kim JK. Comparison of the grain composition in resveratrol-enriched and glufosinate-tolerant rice ( Oryza sativa ) to conventional rice using univariate and multivariate analysis. J Food Compost Anal 2016. [DOI: 10.1016/j.jfca.2016.08.005] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/10/2023]
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Bartholomaeus A, Batista JC, Burachik M, Parrott W. Recommendations from the workshop on Comparative Approaches to Safety Assessment of GM Plant Materials: A road toward harmonized criteria? GM CROPS & FOOD 2016; 6:69-79. [PMID: 25706477 PMCID: PMC5033214 DOI: 10.1080/21645698.2015.1011886] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Indexed: 02/02/2023]
Abstract
An international meeting of genetically modified (GM) food safety assessors from the main importing and exporting countries from Asia and the Americas was held in Buenos Aires, Argentina, between June 26th and 28th, 2013. Participants shared their evaluation approaches, identified similarities and challenges, and used their experience to propose areas for future work. Recommendations for improving risk assessment procedures and avenues for future collaboration were also discussed. The deliberations of the meeting were also supported by a survey of participants which canvassed risk assessment approaches across the regions from which participants came. This project was initiated by Argentine Agri-Food Health and Quality National Service (SENASA, Ministry of Agriculture, Argentina), with the support of the International Life Sciences Institute (ILSI) and other partner institutions. The importance of making all possible efforts toward more integrated and harmonized regulatory oversight for GM organisms (GMOs) was strongly emphasized. This exercise showed that such harmonization is a feasible goal that would contribute to sustain a fluid trade of commodities and ultimately enhance food security. Before this can be achieved, key issues identified in this meeting will have to be addressed in the near future to enable regulatory collaboration or joint work. The authors propose that the recommendations coming out of the meeting should be used as a basis for continuing work, follow up discussions and concrete actions.
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Affiliation(s)
- Andrew Bartholomaeus
- a School of Pharmacy; University of Canberra; Canberra, Australia & Therapeutic Research Centre; School of Medicine; University of Queensland ; Brisbane , Queensland , Australia
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Analysis of Vitamin K1 in Soybean Seed: Assessing Levels in a Lineage Representing Over 35 Years of Breeding. J AM OIL CHEM SOC 2016. [DOI: 10.1007/s11746-016-2795-8] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/22/2022]
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Harrigan GG, Venkatesh TV, Leibman M, Blankenship J, Perez T, Halls S, Chassy AW, Fiehn O, Xu Y, Goodacre R. Evaluation of metabolomics profiles of grain from maize hybrids derived from near-isogenic GM positive and negative segregant inbreds demonstrates that observed differences cannot be attributed unequivocally to the GM trait. Metabolomics 2016; 12:82. [PMID: 27453709 PMCID: PMC4940444 DOI: 10.1007/s11306-016-1017-6] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 11/10/2015] [Accepted: 02/22/2016] [Indexed: 11/30/2022]
Abstract
INTRODUCTION Past studies on plant metabolomes have highlighted the influence of growing environments and varietal differences in variation of levels of metabolites yet there remains continued interest in evaluating the effect of genetic modification (GM). OBJECTIVES Here we test the hypothesis that metabolomics differences in grain from maize hybrids derived from a series of GM (NK603, herbicide tolerance) inbreds and corresponding negative segregants can arise from residual genetic variation associated with backcrossing and that the effect of insertion of the GM trait is negligible. METHODS Four NK603-positive and negative segregant inbred males were crossed with two different females (testers). The resultant hybrids, as well as conventional comparator hybrids, were then grown at three replicated field sites in Illinois, Minnesota, and Nebraska during the 2013 season. Metabolomics data acquisition using gas chromatography-time of flight-mass spectrometry (GC-TOF-MS) allowed the measurement of 367 unique metabolite features in harvested grain, of which 153 were identified with small molecule standards. Multivariate analyses of these data included multi-block principal component analysis and ANOVA-simultaneous component analysis. Univariate analyses of all 153 identified metabolites was conducted based on significance testing (α = 0.05), effect size evaluation (assessing magnitudes of differences), and variance component analysis. RESULTS Results demonstrated that the largest effects on metabolomic variation were associated with different growing locations and the female tester. They further demonstrated that differences observed between GM and non-GM comparators, even in stringent tests utilizing near-isogenic positive and negative segregants, can simply reflect minor genomic differences associated with conventional back-crossing practices. CONCLUSION The effect of GM on metabolomics variation was determined to be negligible and supports that there is no scientific rationale for prioritizing GM as a source of variation.
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Affiliation(s)
| | | | - Mark Leibman
- Regulatory Affairs, Monsanto Company, St. Louis, MO USA
| | | | - Timothy Perez
- Statistics Technology Center, Monsanto Company, St. Louis, MO USA
| | - Steven Halls
- Chemistry Technology, Monsanto Company, St. Louis, MO USA
| | - Alexander W. Chassy
- Genome Center - Metabolomics, University of California at Davis, Davis, CA USA
| | - Oliver Fiehn
- Genome Center - Metabolomics, University of California at Davis, Davis, CA USA
- Biochemistry Department, King Abdulaziz University, Jeddah, 21589 Saudi Arabia
| | - Yun Xu
- School of Chemistry, Manchester Institute of Biotechnology, University of Manchester, 131 Princess Street, Manchester, M1 7ND UK
| | - Royston Goodacre
- School of Chemistry, Manchester Institute of Biotechnology, University of Manchester, 131 Princess Street, Manchester, M1 7ND UK
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8
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Delaney B. Safety assessment of foods from genetically modified crops in countries with developing economies. Food Chem Toxicol 2015; 86:132-43. [PMID: 26456807 DOI: 10.1016/j.fct.2015.10.001] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/30/2015] [Revised: 10/02/2015] [Accepted: 10/05/2015] [Indexed: 10/22/2022]
Abstract
Population growth particularly in countries with developing economies will result in a need to increase food production by 70% by the year 2050. Biotechnology has been utilized to produce genetically modified (GM) crops for insect and weed control with benefits including increased crop yield and will also be used in emerging countries. A multicomponent safety assessment paradigm has been applied to individual GM crops to determine whether they as safe as foods from non-GM crops. This paper reviews methods to assess the safety of foods from GM crops for safe consumption from the first generation of GM crops. The methods can readily be applied to new products developed within country and this paper will emphasize the concept of data portability; that safety data produced in one geographic location is suitable for safety assessment regardless of where it is utilized.
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Affiliation(s)
- Bryan Delaney
- Global Industry Affairs and Regulatory, DuPont Pioneer, 7100 NW 62nd Avenue, P.O. Box 1004, Johnston, IA 50131, United States.
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Cong B, Maxwell C, Luck S, Vespestad D, Richard K, Mickelson J, Zhong C. Genotypic and Environmental Impact on Natural Variation of Nutrient Composition in 50 Non Genetically Modified Commercial Maize Hybrids in North America. JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY 2015; 63:5321-5334. [PMID: 25971869 DOI: 10.1021/acs.jafc.5b01764] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/04/2023]
Abstract
This study was designed to assess natural variation in composition and metabolites in 50 genetically diverse non genetically modified maize hybrids grown at six locations in North America. Results showed that levels of compositional components in maize forage were affected by environment more than genotype. Crude protein, all amino acids except lysine, manganese, and β-carotene in maize grain were affected by environment more than genotype; however, most proximates and fibers, all fatty acids, lysine, most minerals, vitamins, and secondary metabolites in maize grain were affected by genotype more than environment. A strong interaction between genotype and environment was seen for some analytes. The results could be used as reference values for future nutrient composition studies of genetically modified crops and to expand conventional compositional data sets. These results may be further used as a genetic basis for improvement of the nutritional value of maize grain by molecular breeding and biotechnology approaches.
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Affiliation(s)
- Bin Cong
- †DuPont Pioneer, 200 Powder Mill Road, P.O. Box 8352, Wilmington, Delaware 19803, United States
| | - Carl Maxwell
- †DuPont Pioneer, 200 Powder Mill Road, P.O. Box 8352, Wilmington, Delaware 19803, United States
| | - Stanley Luck
- †DuPont Pioneer, 200 Powder Mill Road, P.O. Box 8352, Wilmington, Delaware 19803, United States
| | - Deanne Vespestad
- ‡Eurofins AgroSciences, Fort Walton Beach, Florida 32547, United States
| | - Keith Richard
- §EPL Bio Analytical Services, 9095 West Harristown Boulevard, Niantic, Illinois 62551, United States
| | - James Mickelson
- #DuPont Pioneer, 8325 N.W. 62nd Avenue, Johnston, Iowa 50131, United States
| | - Cathy Zhong
- †DuPont Pioneer, 200 Powder Mill Road, P.O. Box 8352, Wilmington, Delaware 19803, United States
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10
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Geng T, Liu K, Frazier R, Shi L, Bell E, Glenn K, Ward JM. Development of a Sandwich ELISA for Quantification of Gly m 4, a Soybean Allergen. JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY 2015; 63:4947-53. [PMID: 25946567 DOI: 10.1021/acs.jafc.5b00792] [Citation(s) in RCA: 31] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/04/2023]
Abstract
Gly m 4 is a key soybean allergen that causes allergic symptoms in the skin, gastrointestinal tract, or respiratory tract of sensitive individuals. To understand naturally variable levels of Gly m 4 among conventional soybean varieties, a sandwich ELISA was developed and validated using a mouse anti-Gly m 4 monoclonal antibody and a goat anti-Gly m 4 polyclonal antibody as capture and detection antibodies, respectively. The ELISA shows high specificity to Gly m 4 without any cross-reactivity to other soybean proteins and has a quantification range of 7.8-250 ng/mL using an Escherichia coli-produced recombinant Gly m 4, with 2.1 ng/mL being the limit of detection. Within the quantification range, the coefficients of variation of the intra-assay and interassay precision are less than 5 and 12%, respectively. Moreover, extraction efficiency and dilutional parallelism experiments were completed to demonstrate the assay is accurate. The validated assay was used to quantify Gly m 4 levels in 128 soybean samples from 24 conventional soybean varieties grown at 8 distinct geographical locations. There was a 13-fold difference between the least and greatest amounts of Gly m 4 concentrations among the samples, and the results demonstrate that the most significant sources of variability in Gly m 4 levels in the conventional varieties were related to location and variety.
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Affiliation(s)
- Tao Geng
- Monsanto Company, 800 North Lindbergh Boulevard, St. Louis, Missouri 63167, United States
| | - Kang Liu
- Monsanto Company, 800 North Lindbergh Boulevard, St. Louis, Missouri 63167, United States
| | - Ronald Frazier
- Monsanto Company, 800 North Lindbergh Boulevard, St. Louis, Missouri 63167, United States
| | - Lifang Shi
- Monsanto Company, 800 North Lindbergh Boulevard, St. Louis, Missouri 63167, United States
| | - Erin Bell
- Monsanto Company, 800 North Lindbergh Boulevard, St. Louis, Missouri 63167, United States
| | - Kevin Glenn
- Monsanto Company, 800 North Lindbergh Boulevard, St. Louis, Missouri 63167, United States
| | - Jason M Ward
- Monsanto Company, 800 North Lindbergh Boulevard, St. Louis, Missouri 63167, United States
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Fast BJ, Schafer AC, Johnson TY, Potts BL, Herman RA. Insect-protected event DAS-81419-2 soybean (Glycine max L.) grown in the United States and Brazil is compositionally equivalent to nontransgenic soybean. JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY 2015; 63:2063-73. [PMID: 25641393 PMCID: PMC4342727 DOI: 10.1021/jf505015y] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/16/2014] [Revised: 01/28/2015] [Accepted: 01/31/2015] [Indexed: 05/12/2023]
Abstract
The transgenic soybean event DAS-81419-2 contains genes that encode the Cry1F, Cry1Ac, and PAT proteins. Cry1F and Cry1Ac provide protection against key lepidopteran insect pests, while PAT confers tolerance to the herbicide glufosinate. To satisfy regulatory requirements for the safety evaluation of transgenic crops, studies were conducted in the United States and Brazil to evaluate the nutrient and antinutrient composition of event DAS-81419-2 soybean. On the basis of the results of these studies, event DAS-81419-2 soybean is compositionally equivalent to nontransgenic soybean. This conclusion concurs with numerous other published studies in soybean and other crops where compositional equivalence between the transgenic crop and its nontransgenic comparator has been demonstrated.
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Affiliation(s)
- Brandon J. Fast
- Dow AgroSciences LLC, 9330 Zionsville Road, Indianapolis, Indiana 46268, United States
| | - Ariane C. Schafer
- Dow AgroSciences Industrial Ltda., Rod. Anhanguera Km 296, Cravinhos, SP 14140-000, Brazil
| | - Tempest Y. Johnson
- Dow AgroSciences LLC, 9330 Zionsville Road, Indianapolis, Indiana 46268, United States
| | - Brian L. Potts
- Covance
Laboratories Inc., 3301
Kinsman Boulevard, Madison, Wisconsin 53704, United States
| | - Rod A. Herman
- Dow AgroSciences LLC, 9330 Zionsville Road, Indianapolis, Indiana 46268, United States
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Venkatesh TV, Cook K, Liu B, Perez T, Willse A, Tichich R, Feng P, Harrigan GG. Compositional differences between near-isogenic GM and conventional maize hybrids are associated with backcrossing practices in conventional breeding. PLANT BIOTECHNOLOGY JOURNAL 2015; 13:200-10. [PMID: 25196222 DOI: 10.1111/pbi.12248] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/09/2014] [Revised: 07/14/2014] [Accepted: 07/29/2014] [Indexed: 05/03/2023]
Abstract
Here, we show that differences between genetically modified (GM) and non-GM comparators cannot be attributed unequivocally to the GM trait, but arise because of minor genomic differences in near-isogenic lines. Specifically, this study contrasted the effect of three GM traits (drought tolerance, MON 87460; herbicide resistance, NK603; insect protection, MON 89034) on maize grain composition relative to the effects of residual genetic variation from backcrossing. Important features of the study included (i) marker-assisted backcrossing to generate genetically similar inbred variants for each GM line, (ii) high-resolution genotyping to evaluate the genetic similarity of GM lines to the corresponding recurrent parents and (iii) introgression of the different GM traits separately into a wide range of genetically distinct conventional inbred lines. The F1 hybrids of all lines were grown concurrently at three replicated field sites in the United States during the 2012 growing season, and harvested grain was subjected to compositional analysis. Proximates (protein, starch and oil), amino acids, fatty acids, tocopherols and minerals were measured. The number of statistically significant differences (α = 0.05), as well as magnitudes of difference, in mean levels of these components between corresponding GM variants was essentially identical to that between GM and non-GM controls. The largest sources of compositional variation were the genetic background of the different conventional inbred lines (males and females) used to generate the maize hybrids and location. The lack of any compositional effect attributable to GM suggests the development of modern agricultural biotechnology has been accompanied by a lack of any safety or nutritional concerns.
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Xu Y, Goodacre R, Harrigan GG. Compositional equivalence of grain from multi-trait drought-tolerant maize hybrids to a conventional comparator: univariate and multivariate assessments. JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY 2014; 62:9597-9608. [PMID: 25175069 DOI: 10.1021/jf5019609] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/03/2023]
Abstract
MON 87460 (D1) maize contains a gene that expresses the cold shock protein B (CSPB) from Bacillus subtilis to confer a yield advantage when yield is limited by water availability. This study evaluated the composition of grain from the D1-containing combined-trait maize hybrids D1 × NK603, D1 × MON 89034 × NK603, and D1 × MON 89034 × MON 88017. These stacks offer a combination of insect protection and herbicide tolerance traits. These hybrids were grown under well-watered and water-limited conditions at three replicated field sites across Chile during the 2006-2007 growing season. Compositional analyses included measurement of proximates, fibers, total amino acids, fatty acids, minerals, vitamins, raffinose, phytic acid, p-coumaric acid, and ferulic acid. The statistical analyses included an evaluation of the applicability of multiblock principal component analysis (MB-PCA) and ANOVA-simultaneous component analysis (ASCA) to studies when more than one experimental factor will contribute to compositional variability. Results from these multivariate procedures highlighted that water treatment was the greatest contributor to compositional variability and, as expected, confirmed that the grain of combined-trait drought-tolerant hybrids was compositionally equivalent to that of conventional comparators as established by traditional statistical significance testing.
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Affiliation(s)
- Yun Xu
- School of Chemistry, Manchester Institute of Biotechnology, University of Manchester , 131 Princess Street, Manchester M1 7ND, United Kingdom
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Zeng W, Hazebroek J, Beatty M, Hayes K, Ponte C, Maxwell C, Zhong CX. Analytical method evaluation and discovery of variation within maize varieties in the context of food safety: transcript profiling and metabolomics. JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY 2014; 62:2997-3009. [PMID: 24564827 DOI: 10.1021/jf405652j] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/25/2023]
Abstract
Profiling techniques such as microarrays, proteomics, and metabolomics are used widely to assess the overall effects of genetic background, environmental stimuli, growth stage, or transgene expression in plants. To assess the potential regulatory use of these techniques in agricultural biotechnology, we carried out microarray and metabolomic studies of 3 different tissues from 11 conventional maize varieties. We measured technical variations for both microarrays and metabolomics, compared results from individual plants and corresponding pooled samples, and documented variations detected among different varieties with individual plants or pooled samples. Both microarray and metabolomic technologies are reproducible and can be used to detect plant-to-plant and variety-to-variety differences. A pooling strategy lowered sample variations for both microarray and metabolomics while capturing variety-to-variety variation. However, unknown genomic sequences differing between maize varieties might hinder the application of microarrays. High-throughput metabolomics could be useful as a tool for the characterization of transgenic crops. However, researchers will have to take into consideration the impact on the detection and quantitation of a wide range of metabolites on experimental design as well as validation and interpretation of results.
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Affiliation(s)
- Weiqing Zeng
- DuPont Pioneer, Regulatory Sciences, Wilmington, Delaware 19880, United States
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15
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Venkatesh TV, Breeze ML, Liu K, Harrigan GG, Culler AH. Compositional analysis of grain and forage from MON 87427, an inducible male sterile and tissue selective glyphosate-tolerant maize product for hybrid seed production. JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY 2014; 62:1964-73. [PMID: 24397242 DOI: 10.1021/jf4041589] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/03/2023]
Abstract
Conventional maize hybrid seed production has historically relied upon detasseling using either manual methods or semiautomated processes to ensure the purity of the hybrid cross. Monsanto Co. has developed biotechnology-derived MON 87427 maize with tissue-selective glyphosate tolerance to facilitate the production of hybrid maize seed. MON 87427 utilizes a specific promoter and intron combination to drive expression of CP4 EPSPS protein in vegetative and female reproductive tissues, conferring tolerance to glyphosate. This specific combination of regulatory elements also results in limited or no production of CP4 EPSPS protein in two key male reproductive tissues: pollen microspores, which develop into pollen grains, and tapetum cells that supply nutrients to the pollen. Thus, MON 87427 induces a male sterile phenotype after appropriately timed glyphosate applications. To confer additional benefits of herbicide tolerance and/or insect resistance, MON 87427 was combined with MON 89034 and NK603 by conventional breeding to develop MON 87427 × MON 89034 × NK603. The work described here is an assessment of the nutrient, antinutrient, and secondary metabolite levels in grain and forage tissues of MON 87427 and MON 87427 × MON 89034 × NK603. Results demonstrated that MON 87427 is compositionally equivalent to a near-isogenic conventional comparator. Results from this analysis established that the compositional equivalence observed for the single-event product MON 87427 is extendable to the combined-trait product, MON 87427 × MON 89034 × NK603. With increasing global demand for food production, the development of more efficient seed production strategies is important to sustainable agriculture. The study reported here demonstrated that biotechnology can be applied to simplify hybrid maize seed production without affecting crop composition.
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Herman RA, Price WD. Unintended compositional changes in genetically modified (GM) crops: 20 years of research. JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY 2013; 61:11695-701. [PMID: 23414177 DOI: 10.1021/jf400135r] [Citation(s) in RCA: 69] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/12/2023]
Abstract
The compositional equivalency between genetically modified (GM) crops and nontransgenic comparators has been a fundamental component of human health safety assessment for 20 years. During this time, a large amount of information has been amassed on the compositional changes that accompany both the transgenesis process and traditional breeding methods; additionally, the genetic mechanisms behind these changes have been elucidated. After two decades, scientists are encouraged to objectively assess this body of literature and determine if sufficient scientific uncertainty still exists to continue the general requirement for these studies to support the safety assessment of transgenic crops. It is concluded that suspect unintended compositional effects that could be caused by genetic modification have not materialized on the basis of this substantial literature. Hence, compositional equivalence studies uniquely required for GM crops may no longer be justified on the basis of scientific uncertainty.
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Affiliation(s)
- Rod A Herman
- Dow AgroSciences LLC, 9330 Zionsville Road, Indianapolis, Indiana 46268, United States
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Harrison JM, Howard D, Malven M, Halls SC, Culler AH, Harrigan GG, Wolfinger RD. Principal variance component analysis of crop composition data: a case study on herbicide-tolerant cotton. JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY 2013; 61:6412-6422. [PMID: 23647471 DOI: 10.1021/jf400606t] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/02/2023]
Abstract
Compositional studies on genetically modified (GM) and non-GM crops have consistently demonstrated that their respective levels of key nutrients and antinutrients are remarkably similar and that other factors such as germplasm and environment contribute more to compositional variability than transgenic breeding. We propose that graphical and statistical approaches that can provide meaningful evaluations of the relative impact of different factors to compositional variability may offer advantages over traditional frequentist testing. A case study on the novel application of principal variance component analysis (PVCA) in a compositional assessment of herbicide-tolerant GM cotton is presented. Results of the traditional analysis of variance approach confirmed the compositional equivalence of the GM and non-GM cotton. The multivariate approach of PVCA provided further information on the impact of location and germplasm on compositional variability relative to GM.
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Affiliation(s)
- Jay M Harrison
- Maritz Holdings Inc., 1395 North Highway Drive, Fenton, Missouri 63099, USA
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Petrick JS, Brower-Toland B, Jackson AL, Kier LD. Safety assessment of food and feed from biotechnology-derived crops employing RNA-mediated gene regulation to achieve desired traits: a scientific review. Regul Toxicol Pharmacol 2013; 66:167-76. [PMID: 23557984 DOI: 10.1016/j.yrtph.2013.03.008] [Citation(s) in RCA: 60] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/28/2012] [Revised: 03/19/2013] [Accepted: 03/22/2013] [Indexed: 01/09/2023]
Abstract
Gene expression can be modulated in plants to produce desired traits through agricultural biotechnology. Currently, biotechnology-derived crops are compared to their conventional counterparts, with safety assessments conducted on the genetic modification and the intended and unintended differences. This review proposes that this comparative safety assessment paradigm is appropriate for plants modified to express mediators of RNA-mediated gene regulation, including RNA interference (RNAi), a gene suppression mechanism that naturally occurs in plants and animals. The molecular mediators of RNAi, including long double-stranded RNAs (dsRNA), small interfering RNAs (siRNA), and microRNAs (miRNA), occur naturally in foods; therefore, there is an extensive history of safe consumption. Systemic exposure following consumption of plants containing dsRNAs that mediate RNAi is limited in higher organisms by extensive degradation of ingested nucleic acids and by biological barriers to uptake and efficacy of exogenous nucleic acids. A number of mammalian RNAi studies support the concept that a large margin of safety will exist for any small fraction of RNAs that might be absorbed following consumption of foods from biotechnology-derived plants that employ RNA-mediated gene regulation. Food and feed derived from these crops utilizing RNA-based mechanisms is therefore expected to be as safe as food and feed derived through conventional plant breeding.
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Affiliation(s)
- Jay S Petrick
- Monsanto Company, 800 N. Lindbergh Blvd, St. Louis, MO 63167, USA.
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Scientific Opinion updating the risk assessment conclusions and risk management recommendations on the genetically modified insect resistant maize MON 810. EFSA J 2012. [DOI: 10.2903/j.efsa.2012.3017] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/24/2022] Open
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Scientific Opinion on an application (EFSA‐GMO‐NL‐2005‐24) for the placing on the market of the herbicide tolerant genetically modified soybean 40‐3‐2 for cultivation under Regulation (EC) No 1829/2003 from Monsanto. EFSA J 2012. [DOI: 10.2903/j.efsa.2012.2753] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022] Open
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Harrigan GG, Harrison JM. Assessing compositional variability through graphical analysis and Bayesian statistical approaches: case studies on transgenic crops. Biotechnol Genet Eng Rev 2012; 28:15-32. [PMID: 22616479 DOI: 10.5661/bger-28-15] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
Abstract
New transgenic (GM) crops are subjected to extensive safety assessments that include compositional comparisons with conventional counterparts as a cornerstone of the process. The influence of germplasm, location, environment, and agronomic treatments on compositional variability is, however, often obscured in these pair-wise comparisons. Furthermore, classical statistical significance testing can often provide an incomplete and over-simplified summary of highly responsive variables such as crop composition. In order to more clearly describe the influence of the numerous sources of compositional variation we present an introduction to two alternative but complementary approaches to data analysis and interpretation. These include i) exploratory data analysis (EDA) with its emphasis on visualization and graphics-based approaches and ii) Bayesian statistical methodology that provides easily interpretable and meaningful evaluations of data in terms of probability distributions. The EDA case-studies include analyses of herbicide-tolerant GM soybean and insect-protected GM maize and soybean. Bayesian approaches are presented in an analysis of herbicide-tolerant GM soybean. Advantages of these approaches over classical frequentist significance testing include the more direct interpretation of results in terms of probabilities pertaining to quantities of interest and no confusion over the application of corrections for multiple comparisons. It is concluded that a standardized framework for these methodologies could provide specific advantages through enhanced clarity of presentation and interpretation in comparative assessments of crop composition.
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Affiliation(s)
- George G Harrigan
- Regulatory Product Characterization and Safety Center, Monsanto Company, 800 North Lindbergh Blvd., St. Louis, MO 63167, USA.
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