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Shi E, Zou Y, Zheng Y, Zhang M, Liu S, Zhang S, Zhang X. Kinetic study on anaerobic digestion of long-chain fatty acid enhanced by activated carbon adsorption and direct interspecies electron transfer. BIORESOURCE TECHNOLOGY 2024; 403:130902. [PMID: 38801955 DOI: 10.1016/j.biortech.2024.130902] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/17/2024] [Revised: 05/24/2024] [Accepted: 05/24/2024] [Indexed: 05/29/2024]
Abstract
This study applied granular activated carbon (GAC) to improve the anaerobic digestion of long-chain fatty acid (LCFA). New kinetics were considered to describe the effect of GAC on the LCFA degradation, including i) The adsorption kinetics of GAC for LCFA, ii) The β-oxidation pathway of LCFA, iii) The attached biomass improved by direct interspecies electron transfer (DIET). The developed model simulated the anaerobic digestion of stearic acid, palmitic acid, myristic acid, and lauric acid with 1.00 and 2.00 g l-1 of GAC. The simulation results suggested that adding GAC led to the increase of km,CnGAC and km,acGAC. As the concentration of GAC increased, the values of kinetic parameters increased while the accumulated acetate concentration decreased. Thus, GAC improved the kinetic parameters of the attached syntrophic communities.
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Affiliation(s)
- En Shi
- School of Municipal and Environmental Engineering, Shenyang Jianzhu University, Shenyang 110168, China.
| | - Yuliang Zou
- School of Municipal and Environmental Engineering, Shenyang Jianzhu University, Shenyang 110168, China
| | - Yunbin Zheng
- School of Municipal and Environmental Engineering, Shenyang Jianzhu University, Shenyang 110168, China
| | - Miao Zhang
- School of Material Science and Engineering, Shenyang Jianzhu University, Shenyang 110168, China
| | - Shasha Liu
- School of Municipal and Environmental Engineering, Shenyang Jianzhu University, Shenyang 110168, China
| | - Shuai Zhang
- School of Municipal and Environmental Engineering, Shenyang Jianzhu University, Shenyang 110168, China
| | - Xiangzhi Zhang
- School of Material Science and Engineering, Shenyang Jianzhu University, Shenyang 110168, China
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2
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Liu Z, Cui Z, Guo Z, Li D, He Z, Liu W, Yue X, Zhou A. Insights into the effect of nitrate photolysis on short-chain fatty acids production from waste activated sludge in anaerobic fermentation system: Performance and mechanisms. WATER RESEARCH 2024; 258:121772. [PMID: 38761600 DOI: 10.1016/j.watres.2024.121772] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/23/2024] [Revised: 04/20/2024] [Accepted: 05/12/2024] [Indexed: 05/20/2024]
Abstract
Nitrate photolysis has become an efficient, low-cost and promising technology for emerging contaminants removal, while its performance and mechanism for waste activated sludge (WAS) treatment is still unknown. This study innovatively introduced nitrate photolysis for WAS disintegration, and investigated the effect of nitrate addition (150-375 mg N/L) for short-chain fatty acids (SCFAs) production during anaerobic fermentation (AF). The results showed that nitrate photolysis significantly promoted the SCFAs production from WAS, and peaked at 280.7 mg/g VSS with 7-d fermentation with 150 mg N/L addition (150N-UV), which increased by 8.8-35.0 % and 10.7-23.3 % compared with other photolysis groups and sole nitrate groups. Effective release of the soluble organics was observed in the nitrate photolysis groups during AF, especially soluble proteins, reaching 1505.4 mg COD/L at 9 d in 150N-UV group, promoted by 7.0∼15.7 % than nitrate/nitrate photolysis groups. The model compounds simulation experiment further demonstrated the positive effect of nitrate photolysis on organics hydrolysis and SCFAs accumulation. The result of the radical capture and quenching verified the reactive oxygen species contributed more compared with reactive nitrogen species. Functional group analysis confirmed the effective bioconversion of the macromolecular organics during the fermentation. Moreover, the nitrate photolysis enhanced the enrichment of the functional consortia, including anaerobic fermentation bacteria (AFB), e.g., Fnoticella, Romboutsia, Gracilibacter and Sedimentibacter, and nitrate reducing bacteria (NRB), e.g., Acinerobacter and Ahniella. The macrogenetic analysis further revealed that glycolysis, amino acid metabolism, acetate metabolism and nitrogen metabolism were the dominating metabolic pathways during fermentation, and the abundance of the relevant genes were enhanced in 150N-UV group.
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Affiliation(s)
- Zhihong Liu
- College of Environmental Science and Engineering, Taiyuan University of Technology, Taiyuan, China; Shanxi Academy of Advanced Research and Innovation, Taiyuan 030024, China
| | - Zhixuan Cui
- College of Environmental Science and Engineering, Taiyuan University of Technology, Taiyuan, China
| | - Zhengtong Guo
- College of Environmental Science and Engineering, Taiyuan University of Technology, Taiyuan, China
| | - Dengfei Li
- College of Environmental Science and Engineering, Taiyuan University of Technology, Taiyuan, China; Shanxi-Zheda Institute of Advanced Materials and Chemical Engineering, Taiyuan, China
| | - Zhangwei He
- School of Environment and Municipal Engineering, Xi'an University of Architecture and Technology, Shanxi 710055, China
| | - Wenzong Liu
- Civil and Environmental Engineering, Harbin Institute of Technology, Shenzhen 518055, China
| | - Xiuping Yue
- College of Environmental Science and Engineering, Taiyuan University of Technology, Taiyuan, China; Shanxi-Zheda Institute of Advanced Materials and Chemical Engineering, Taiyuan, China
| | - Aijuan Zhou
- College of Environmental Science and Engineering, Taiyuan University of Technology, Taiyuan, China; Shanxi-Zheda Institute of Advanced Materials and Chemical Engineering, Taiyuan, China.
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3
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Li Q, Zhu Y, Jiang N, Li J, Liu Y, Chen X, Xu X, Wang H, Ma Y, Huang M. Enhanced Sb(V) removal of sulfate-rich wastewater by anaerobic granular sludge assisted with Fe/C amendment. THE SCIENCE OF THE TOTAL ENVIRONMENT 2024; 927:172113. [PMID: 38580110 DOI: 10.1016/j.scitotenv.2024.172113] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/20/2023] [Revised: 03/28/2024] [Accepted: 03/28/2024] [Indexed: 04/07/2024]
Abstract
Antimony (Sb) and sulfate are two common pollutants in Sb mine drainage and Sb-containing textile wastewater. In this paper, it was found that iron‑carbon (Fe/C) enhanced Sb(V) removal from sulfate-rich wastewater by anaerobic granular sludge (AnGS). Sulfate inhibited Sb(V) removal (S + Sb, k = 0.101), while Fe/C alleviated the inhibition and increased Sb(V) removal rate by 2.3 times (Fe/C + S + Sb, k = 0.236). Fe/C could promote the removal of Sb(III), and Sb(III) content decreased significantly after 8 h. Meanwhile, Fe/C enhanced the removal of sulfate. The 3D-EEM spectrum of supernatant in Fe/C + S + Sb group (at 24 h) showed that Fe/C stimulated the production of soluble microbial products (SMP) in wastewater. SMP alleviated the inhibition of sulfate, promoting AnGS to reduce Sb(V). Sb(V) could be reduced to Sb(III) both by AnGS and sulfides produced from sulfate reduction. Further analysis of extracellular polymeric substances (EPS) and AnGS showed that Fe/C increased the adsorbed Sb(V) in EPS and the c-type cytochrome content in AnGS, which may be beneficial for Sb(V) removal. Sb(V) reduction in Fe/C + S + Sb group may be related to the genus Acinetobacter, while in Sb group, several bacteria may be involved in Sb(V) reduction, such as Acinetobacter, Pseudomonas and Corynebacterium. This study provided insights into Fe/C-enhanced Sb(V) removal from sulfate-rich wastewater.
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Affiliation(s)
- Qi Li
- College of Environmental Science and Engineering, Donghua University, Shanghai 201620, China
| | - Yanping Zhu
- College of Environmental Science and Engineering, Donghua University, Shanghai 201620, China
| | - Nan Jiang
- College of Environmental Science and Engineering, Donghua University, Shanghai 201620, China
| | - Jun Li
- College of Environmental Science and Engineering, Donghua University, Shanghai 201620, China
| | - Yanbiao Liu
- College of Environmental Science and Engineering, Donghua University, Shanghai 201620, China
| | - Xiaoguang Chen
- College of Environmental Science and Engineering, Donghua University, Shanghai 201620, China
| | - Xiaoyang Xu
- College of Environmental Science and Engineering, Donghua University, Shanghai 201620, China
| | - Huangyingzi Wang
- College of Environmental Science and Engineering, Donghua University, Shanghai 201620, China
| | - Yimeng Ma
- College of Environmental Science and Engineering, Donghua University, Shanghai 201620, China
| | - Manhong Huang
- College of Environmental Science and Engineering, Donghua University, Shanghai 201620, China; Shanghai Institute of Pollution Control and Ecological Security, Shanghai 200092, China; State Key Laboratory of Modification of Chemical Fibers and Polymer Materials, Donghua University, Shanghai 201620, China.
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4
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Qiang H, Liu Z, Yin X, Guo Z, Duan Y, Liu W, Yue X, Zhou A. Efficient phosphate and hydrogen recovery from sludge fermentation liquid by sacrificial iron anode in electro-fermentation system. JOURNAL OF ENVIRONMENTAL MANAGEMENT 2024; 360:121110. [PMID: 38733846 DOI: 10.1016/j.jenvman.2024.121110] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/14/2024] [Revised: 03/22/2024] [Accepted: 05/05/2024] [Indexed: 05/13/2024]
Abstract
Electro-fermentation (EF) has been extensively studied for recovering hydrogen and phosphorus from waste activated sludge (WAS), while was limited for the further application due to the low hydrogen yield and phosphorus recovery efficiency. This study proposed an efficient strategy for hydrogen and vivianite recovery from the simulated sludge fermentation liquid by sacrificial iron anode in EF. The optimum hydrogen productivity and the utilization efficiency of short chain fatty acids (SCFAs) reached 45.2 mmol/g COD and 77.6% at 5 d in pH 8. Phosphate removal efficiency achieved at 90.8% at 2 d and the high crystallinity and weight percentage of vivianite (84.8%) was obtained. The functional microbes, i.e., anaerobic fermentative bacteria, electrochemical active bacteria, homo-acetogens and iron-reducing bacteria were highly enriched and the inherent interaction between the microbial consortia and environmental variables was thoroughly explored. This work may provide a theoretical basis for energy/resource recovery from WAS in the further implementation.
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Affiliation(s)
- Haifeng Qiang
- College of Environmental Science and Engineering, Taiyuan University of Technology, Taiyuan, 030024, China
| | - Zhihong Liu
- College of Environmental Science and Engineering, Taiyuan University of Technology, Taiyuan, 030024, China; Shanxi Academy of Advanced Research and Innovation, Taiyuan, 030006, China.
| | - Xiaoyun Yin
- College of Environmental Science and Engineering, Taiyuan University of Technology, Taiyuan, 030024, China
| | - Zhengtong Guo
- College of Environmental Science and Engineering, Taiyuan University of Technology, Taiyuan, 030024, China
| | - Yanqing Duan
- Department of Environmental and Safety Engineering, Taiyuan Institute of Technology, Taiyuan, 030800, China
| | - Wenzong Liu
- Civil and Environmental Engineering, Harbin Institute of Technology, Shenzhen, 518055, China
| | - Xiuping Yue
- College of Environmental Science and Engineering, Taiyuan University of Technology, Taiyuan, 030024, China; Shanxi-Zheda Institute of Advanced Materials and Chemical Engineering, Taiyuan, 030000, China
| | - Aijuan Zhou
- College of Environmental Science and Engineering, Taiyuan University of Technology, Taiyuan, 030024, China; Shanxi-Zheda Institute of Advanced Materials and Chemical Engineering, Taiyuan, 030000, China.
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5
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Zhang P, Zhang J, Zhang T, Zhang L, He Y. Zero-valent iron enhanced methane production of anaerobic digestion by reinforcing microbial electron bifurcation coupled with direct inter-species electron transfer. WATER RESEARCH 2024; 255:121428. [PMID: 38493742 DOI: 10.1016/j.watres.2024.121428] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/15/2023] [Revised: 02/28/2024] [Accepted: 03/05/2024] [Indexed: 03/19/2024]
Abstract
Zero-valent iron (ZVI) can facilitate methanogens of anaerobic digestion (AD). However, the impact of ZVI on the micro-energetic strategies of AD microorganisms remains uncertain. This study aimed to elucidate the development of an energy conservation model involving direct interspecies electron transfer (DIET) and electron bifurcate (EB) by using four types of ZVI. Overall, the ZVI addition resulted in a substantial increase in methane production (1.26 to 2.18 times higher), and the effect of boron (B) doped ZVI was particularly pronounced. The underlying mechanism may be the formation of energy harvest pathway related to DIET. In detail, B-doped ZVI could enhance its interfacial binding to cytochrome c. Decreased polar solvation energy from 20.473 to 1.509 kJ/mol is beneficial for electron transfer, thereby augmenting the flavin-bounded Cytc activity and DIET process. Besides, ZVI-enhanced EB enzyme activity like HdrA2B2C2-MvhAGD could improve the EB process, which can couple with DIET for electron transfer and energy conservation. Energy analysis based on EB-coupled DIET metabolism pathways demonstrated that the ATP saved in this coupled model theoretically line in 0.25 to 0.5 mol ATP/mol substrate. Overall, this study offers valuable insights into microbial energetic strategies pertaining to the utilization of conductive materials, with the target of enhancing methane recovery efficiency from organic waste.
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Affiliation(s)
- Pengshuai Zhang
- China-UK Low Carbon College, Shanghai Jiao Tong University, Shanghai 200240, China; School of Environmental Science and Engineering, Shanghai Jiao Tong University, Shanghai 200240, China
| | - Jingxin Zhang
- China-UK Low Carbon College, Shanghai Jiao Tong University, Shanghai 200240, China; School of Environmental Science and Engineering, Shanghai Jiao Tong University, Shanghai 200240, China.
| | - Tengyu Zhang
- China-UK Low Carbon College, Shanghai Jiao Tong University, Shanghai 200240, China; School of Environmental Science and Engineering, Shanghai Jiao Tong University, Shanghai 200240, China
| | - Lizhi Zhang
- School of Environmental Science and Engineering, Shanghai Jiao Tong University, Shanghai 200240, China
| | - Yiliang He
- China-UK Low Carbon College, Shanghai Jiao Tong University, Shanghai 200240, China; School of Environmental Science and Engineering, Shanghai Jiao Tong University, Shanghai 200240, China
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6
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Zhao YC, Sha C, Zhao XM, Du JX, Zou L, Yong YC. Unnatural Direct Interspecies Electron Transfer Enabled by Living Cell-Cell Click Chemistry. Angew Chem Int Ed Engl 2024:e202402318. [PMID: 38710653 DOI: 10.1002/anie.202402318] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/01/2024] [Revised: 04/29/2024] [Accepted: 05/06/2024] [Indexed: 05/08/2024]
Abstract
Direct interspecies electron transfer (DIET) is essential for maintaining the function and stability of anaerobic microbial consortia. However, only limited natural DIET modes have been identified and DIET engineering remains highly challenging. In this study, an unnatural DIET between Shewanella oneidensis MR-1 (SO, electron donating partner) and Rhodopseudomonas palustris (RP, electron accepting partner) was artificially established by a facile living cell-cell click chemistry strategy. By introducing alkyne- or azide-modified monosaccharides onto the cell outer surface of the target species, precise covalent connections between different species in high proximity were realized through a fast click chemistry reaction. Remarkably, upon covalent connection, outer cell surface C-type cytochromes mediated DIET between SO and RP was achieved and identified, although this was never realized naturally. Moreover, this connection directly shifted the natural H2 mediated interspecies electron transfer (MIET) to DIET between SO and RP, which delivered superior interspecies electron exchange efficiency. Therefore, this work demonstrated a naturally unachievable DIET and an unprecedented MIET shift to DIET accomplished by cell-cell distance engineering, offering an efficient and versatile solution for DIET engineering, which extends our understanding of DIET and opens up new avenues for DIET exploration and applications.
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Affiliation(s)
- Yi-Cheng Zhao
- Biofuel Institute and Institute for Energy Research, School of Environment and Safety Engineering, Jiangsu University, 301 Xuefu Road, Zhenjiang, 212013, China
| | - Chong Sha
- Biofuel Institute and Institute for Energy Research, School of Environment and Safety Engineering, Jiangsu University, 301 Xuefu Road, Zhenjiang, 212013, China
| | - Xing-Ming Zhao
- Biofuel Institute and Institute for Energy Research, School of Environment and Safety Engineering, Jiangsu University, 301 Xuefu Road, Zhenjiang, 212013, China
| | - Jia-Xin Du
- Biofuel Institute and Institute for Energy Research, School of Environment and Safety Engineering, Jiangsu University, 301 Xuefu Road, Zhenjiang, 212013, China
| | - Long Zou
- Nanchang Key Laboratory of Microbial Resources Exploitation & Utilization from Poyang Lake Wetland, College of Life Sciences, Jiangxi Normal University, Nanchang, 330022, China
| | - Yang-Chun Yong
- Biofuel Institute and Institute for Energy Research, School of Environment and Safety Engineering, Jiangsu University, 301 Xuefu Road, Zhenjiang, 212013, China
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7
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Zhao S, Zhu S, Liu S, Song G, Zhao J, Liu R, Liu H, Qu J. Quorum Sensing Enhances Direct Interspecies Electron Transfer in Anaerobic Methane Production. ENVIRONMENTAL SCIENCE & TECHNOLOGY 2024; 58:2891-2901. [PMID: 38308618 DOI: 10.1021/acs.est.3c08503] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/05/2024]
Abstract
Direct interspecies electron transfer (DIET) provides an innovative way to achieve efficient methanogenesis, and this study proposes a new approach to upregulate the DIET pathway by enhancing quorum sensing (QS). Based on long-term reactor performance, QS enhancement achieved more vigorous methanogenesis with 98.7% COD removal efficiency. In the control system, methanogenesis failure occurred at the accumulated acetate of 7420 mg of COD/L and lowered pH of 6.04, and a much lower COD removal of 41.9% was observed. The more significant DIET in QS-enhancing system was supported by higher expression of conductive pili and the c-Cyts cytochrome secretion-related genes, resulting in 12.7- and 10.3-fold improvements. Moreover, QS enhancement also improved the energy production capability, with the increase of F-type and V/A-type ATPase expression by 6.3- and 4.2-fold, and this effect probably provided more energy for nanowires and c-Cyts cytochrome secretion. From the perspective of community structure, QS enhancement increased the abundance of Methanosaeta and Geobacter from 54.3 and 17.6% in the control to 63.0 and 33.8%, respectively. Furthermore, the expression of genes involved in carbon dioxide reduction and alcohol dehydrogenation increased by 0.6- and 7.1-fold, respectively. Taken together, this study indicates the positive effects of QS chemicals to stimulate DIET and advances the understanding of the DIET methanogenesis involved in environments such as anaerobic digesters and sediments.
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Affiliation(s)
- Shunan Zhao
- Center for Water and Ecology, State Key Joint Laboratory of Environment Simulation and Pollution Control, School of Environment, Tsinghua University, Beijing 100084, China
| | - Shaoqing Zhu
- Center for Water and Ecology, State Key Joint Laboratory of Environment Simulation and Pollution Control, School of Environment, Tsinghua University, Beijing 100084, China
| | - Suo Liu
- State Key Joint Laboratory of Environment Simulation and Pollution Control, School of Environment, Tsinghua University, Beijing 100084, China
| | - Ge Song
- Center for Water and Ecology, State Key Joint Laboratory of Environment Simulation and Pollution Control, School of Environment, Tsinghua University, Beijing 100084, China
- Key Laboratory of Drinking Water Science and Technology, Research Centre for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing 100085, China
| | - Jing Zhao
- Center for Water and Ecology, State Key Joint Laboratory of Environment Simulation and Pollution Control, School of Environment, Tsinghua University, Beijing 100084, China
| | - Ruiping Liu
- Center for Water and Ecology, State Key Joint Laboratory of Environment Simulation and Pollution Control, School of Environment, Tsinghua University, Beijing 100084, China
| | - Huijuan Liu
- Center for Water and Ecology, State Key Joint Laboratory of Environment Simulation and Pollution Control, School of Environment, Tsinghua University, Beijing 100084, China
| | - Jiuhui Qu
- Center for Water and Ecology, State Key Joint Laboratory of Environment Simulation and Pollution Control, School of Environment, Tsinghua University, Beijing 100084, China
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8
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Xiu W, Gai R, Chen S, Ren C, Lloyd JR, Bassil NM, Nixon SL, Polya DA, Hou S, Guo H. Ammonium-Enhanced Arsenic Mobilization from Aquifer Sediments. ENVIRONMENTAL SCIENCE & TECHNOLOGY 2024. [PMID: 38317381 DOI: 10.1021/acs.est.3c09640] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/07/2024]
Abstract
Ammonium-related pathways are important for groundwater arsenic (As) enrichment, especially via microbial Fe(III) reduction coupled with anaerobic ammonium oxidation; however, the key pathways (and microorganisms) underpinning ammonium-induced Fe(III) reduction and their contributions to As mobilization in groundwater are still unknown. To address this gap, aquifer sediments hosting high As groundwater from the western Hetao Basin were incubated with 15N-labeled ammonium and external organic carbon sources (including glucose, lactate, and lactate/acetate). Decreases in ammonium concentrations were positively correlated with increases in the total produced Fe(II) (Fe(II)tot) and released As. The molar ratios of Fe(II)tot to oxidized ammonium ranged from 3.1 to 3.7 for all incubations, and the δ15N values of N2 from the headspace increased in 15N-labeled ammonium-treated series, suggesting N2 as the key end product of ammonium oxidation. The addition of ammonium increased the As release by 16.1% to 49.6%, which was more pronounced when copresented with organic electron donors. Genome-resolved metagenomic analyses (326 good-quality MAGs) suggested that ammonium-induced Fe(III) reduction in this system required syntrophic metabolic interactions between bacterial Fe(III) reduction and archaeal ammonium oxidation. The current results highlight the significance of syntrophic ammonium-stimulated Fe(III) reduction in driving As mobilization, which is underestimated in high As groundwater.
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Affiliation(s)
- Wei Xiu
- State Key Laboratory of Biogeology and Environmental Geology, China University of Geosciences, Beijing 100083, PR China
- Institute of Earth sciences, China University of Geosciences (Beijing), Beijing 100083, PR China
- MWR Key Laboratory of Groundwater Conservation and School of Water Resources and Environment, China University of Geosciences (Beijing), Beijing 100083, PR China
- Williamson Research Centre for Molecular Environmental Science, School of Earth and Environmental Sciences, The University of Manchester, Manchester M13 9PL, United Kingdom
| | - Ruixuan Gai
- State Key Laboratory of Biogeology and Environmental Geology, China University of Geosciences, Beijing 100083, PR China
- Institute of Earth sciences, China University of Geosciences (Beijing), Beijing 100083, PR China
| | - Songze Chen
- Shenzhen Ecological and Environmental Monitoring Center of Guangdong Province, Shenzhen 518049, China
- Shenzhen Key Laboratory of Marine Archaea Geo-Omics, Department of Ocean Science and Department of Ocean Science & Engineering, Southern University of Science and Technology, Shenzhen 518055, China
| | - Cui Ren
- State Key Laboratory of Biogeology and Environmental Geology, China University of Geosciences, Beijing 100083, PR China
- MWR Key Laboratory of Groundwater Conservation and School of Water Resources and Environment, China University of Geosciences (Beijing), Beijing 100083, PR China
| | - Jonathan R Lloyd
- Williamson Research Centre for Molecular Environmental Science, School of Earth and Environmental Sciences, The University of Manchester, Manchester M13 9PL, United Kingdom
| | - Naji M Bassil
- Williamson Research Centre for Molecular Environmental Science, School of Earth and Environmental Sciences, The University of Manchester, Manchester M13 9PL, United Kingdom
| | - Sophie L Nixon
- Williamson Research Centre for Molecular Environmental Science, School of Earth and Environmental Sciences, The University of Manchester, Manchester M13 9PL, United Kingdom
- Manchester Institute of Biotechnology, The University of Manchester, Manchester M1 7DN, U.K
| | - David A Polya
- Williamson Research Centre for Molecular Environmental Science, School of Earth and Environmental Sciences, The University of Manchester, Manchester M13 9PL, United Kingdom
| | - Shengwei Hou
- Shenzhen Key Laboratory of Marine Archaea Geo-Omics, Department of Ocean Science and Department of Ocean Science & Engineering, Southern University of Science and Technology, Shenzhen 518055, China
| | - Huaming Guo
- State Key Laboratory of Biogeology and Environmental Geology, China University of Geosciences, Beijing 100083, PR China
- MWR Key Laboratory of Groundwater Conservation and School of Water Resources and Environment, China University of Geosciences (Beijing), Beijing 100083, PR China
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9
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Yang G, Lin C, Hou T, Wu X, Fang Y, Yao S, Zhuang L, Yuan Y. The survival strategy of direct interspecies electron transfer-capable coculture under electron donor-limited environments. THE SCIENCE OF THE TOTAL ENVIRONMENT 2024; 908:168223. [PMID: 37926263 DOI: 10.1016/j.scitotenv.2023.168223] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/14/2023] [Revised: 10/08/2023] [Accepted: 10/28/2023] [Indexed: 11/07/2023]
Abstract
Direct interspecies electron transfer (DIET) has been considered as an effective mechanism for interspecies electron exchange in microbial syntrophy. Understanding DIET-capable syntrophic associations under energy-limited environments is important because these conditions more closely approximate those found in natural subsurface environments than in the batch cultures in the laboratory. This study, investigated the metabolic dynamics and electron transfer mechanisms in DIET-capable syntrophic coculture of Geobacter metallireducens and Geobacter sulfurreducens under electron donor-limited condition. The wild-coculture and the mutant-coculture with a citrate synthase-deficient G. sulfurreducens exhibited similar rates of syntrophic metabolism under ethanol-limited and ethanol-replete conditions. Transcriptomic analyses revealed that, in the mutant-coculture in which interspecies electron exchange was the sole electron source for G. sulfurreducens, the transcription of genes associated with uptake hydrogenase in G. sulfurreducens were significantly repressed and thus DIET tended to be the preferred mode of interspecies electron exchange under electron donor-limited condition. To overcome electron donor limitation, c-type cytochromes in the coculture actively moved from outer membrane to extracellular environment, potentially via increased secretion of outer-membrane vesicles. These results suggested a preferred electron transfer mechanism for DIET-capable syntrophic communities' survival in the electron donor-limited environments, providing valuable insights into the biogeochemical processes mediated by DIET in natural and engineered environments.
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Affiliation(s)
- Guiqin Yang
- Guangdong Key Laboratory of Environmental Pollution and Health, School of Environment, Jinan University, Guangzhou 510632, China
| | - Canfen Lin
- Guangdong Key Laboratory of Environmental Pollution and Health, School of Environment, Jinan University, Guangzhou 510632, China
| | - Tiqun Hou
- Guangdong Key Laboratory of Environmental Pollution and Health, School of Environment, Jinan University, Guangzhou 510632, China
| | - Xian Wu
- Guangdong Key Laboratory of Environmental Pollution and Health, School of Environment, Jinan University, Guangzhou 510632, China
| | - Yanlun Fang
- Guangdong Key Laboratory of Environmental Pollution and Health, School of Environment, Jinan University, Guangzhou 510632, China
| | - Sijie Yao
- Guangdong Key Laboratory of Environmental Pollution and Health, School of Environment, Jinan University, Guangzhou 510632, China
| | - Li Zhuang
- Guangdong Key Laboratory of Environmental Pollution and Health, School of Environment, Jinan University, Guangzhou 510632, China.
| | - Yong Yuan
- Guangdong Key Laboratory of Environmental Catalysis and Health Risk Control, School of Environmental Science and Engineering, Guangdong University of Technology, Guangzhou 510006, China
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10
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Ma J, Yao Z, Zhao L. Comprehensive study of the combined effects of biochar and iron-based conductive materials on alleviating long chain fatty acids inhibition in anaerobic digestion. ENVIRONMENTAL RESEARCH 2023; 239:117446. [PMID: 37858695 DOI: 10.1016/j.envres.2023.117446] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/19/2023] [Revised: 10/05/2023] [Accepted: 10/17/2023] [Indexed: 10/21/2023]
Abstract
This study investigated the feasibility of alleviating the negative influence of long-chain fatty acids (LCFAs) on anaerobic digestion by biochar, micron zero-valent iron, micron-magnetite (mFe3O4) and their combination. The results demonstrate that co-addition of biochar and 6 g/L mFe3O4 (BC+6 g/L mFe3O4) increased cumulative methane production by 50% as suffered from LCFAs inhibition exerted by 2 g/L glycerol trioleate. The BC+6 g/L mFe3O4 did best in accelerating total organic carbon degradation and volatile fatty acids conversion, through successively enriching Bacteroides, Corynebacterium, and DMER64 to dominant the bacterial community. The proportion of acetotrophic Methanothrix that could alternatively reduce CO2 to methane by accepting electrons via direct interspecies electron transfer (DIET) was 0.09% with BC+6 g/L mFe3O4, nine times more than the proportion in control. Prediction of functional genes revealed the enrichment of the bacterial secretion system, indicating that BC+6 g/L mFe3O4 promoted DIET by stimulating the secretion of extracellular polymeric substances. This study provided novel insights into combining biochar and iron-based conductive materials to enhance AD performance under LCFAs inhibition.
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Affiliation(s)
- Junyi Ma
- Key Laboratory of Low-carbon Green Agriculture in North China of Ministry of Agriculture and Rural Affairs, Institute of Environment and Sustainable Development in Agriculture, Chinese Academy of Agricultural Sciences, Beijing, 100081, China
| | - Zonglu Yao
- Key Laboratory of Low-carbon Green Agriculture in North China of Ministry of Agriculture and Rural Affairs, Institute of Environment and Sustainable Development in Agriculture, Chinese Academy of Agricultural Sciences, Beijing, 100081, China
| | - Lixin Zhao
- Key Laboratory of Low-carbon Green Agriculture in North China of Ministry of Agriculture and Rural Affairs, Institute of Environment and Sustainable Development in Agriculture, Chinese Academy of Agricultural Sciences, Beijing, 100081, China.
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11
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McDaniel EA, Scarborough M, Mulat DG, Lin X, Sampara PS, Olson HM, Young RP, Eder EK, Attah IK, Markillie LM, Hoyt DW, Lipton MS, Hallam SJ, Ziels RM. Diverse electron carriers drive syntrophic interactions in an enriched anaerobic acetate-oxidizing consortium. THE ISME JOURNAL 2023; 17:2326-2339. [PMID: 37880541 PMCID: PMC10689502 DOI: 10.1038/s41396-023-01542-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/31/2023] [Revised: 10/09/2023] [Accepted: 10/11/2023] [Indexed: 10/27/2023]
Abstract
In many anoxic environments, syntrophic acetate oxidation (SAO) is a key pathway mediating the conversion of acetate into methane through obligate cross-feeding interactions between SAO bacteria (SAOB) and methanogenic archaea. The SAO pathway is particularly important in engineered environments such as anaerobic digestion (AD) systems operating at thermophilic temperatures and/or with high ammonia. Despite the widespread importance of SAOB to the stability of the AD process, little is known about their in situ physiologies due to typically low biomass yields and resistance to isolation. Here, we performed a long-term (300-day) continuous enrichment of a thermophilic (55 °C) SAO community from a municipal AD system using acetate as the sole carbon source. Over 80% of the enriched bioreactor metagenome belonged to a three-member consortium, including an acetate-oxidizing bacterium affiliated with DTU068 encoding for carbon dioxide, hydrogen, and formate production, along with two methanogenic archaea affiliated with Methanothermobacter_A. Stable isotope probing was coupled with metaproteogenomics to quantify carbon flux into each community member during acetate conversion and inform metabolic reconstruction and genome-scale modeling. This effort revealed that the two Methanothermobacter_A species differed in their preferred electron donors, with one possessing the ability to grow on formate and the other only consuming hydrogen. A thermodynamic analysis suggested that the presence of the formate-consuming methanogen broadened the environmental conditions where ATP production from SAO was favorable. Collectively, these results highlight how flexibility in electron partitioning during SAO likely governs community structure and fitness through thermodynamic-driven mutualism, shedding valuable insights into the metabolic underpinnings of this key functional group within methanogenic ecosystems.
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Affiliation(s)
- Elizabeth A McDaniel
- Department of Civil Engineering, The University of British Columbia, Vancouver, BC, Canada
- Department of Microbiology and Immunology, The University of British Columbia, Vancouver, BC, Canada
| | - Matthew Scarborough
- Department of Civil and Environmental Engineering, University of Vermont, Burlington, VT, USA
| | - Daniel Girma Mulat
- Department of Civil Engineering, The University of British Columbia, Vancouver, BC, Canada
| | - Xuan Lin
- Department of Civil Engineering, The University of British Columbia, Vancouver, BC, Canada
| | - Pranav S Sampara
- Department of Civil Engineering, The University of British Columbia, Vancouver, BC, Canada
| | - Heather M Olson
- Environmental and Biological Sciences Directorate, Pacific Northwest National Laboratory, Richland, WA, USA
| | - Robert P Young
- Environmental and Biological Sciences Directorate, Pacific Northwest National Laboratory, Richland, WA, USA
| | - Elizabeth K Eder
- Environmental and Biological Sciences Directorate, Pacific Northwest National Laboratory, Richland, WA, USA
| | - Isaac K Attah
- Environmental and Biological Sciences Directorate, Pacific Northwest National Laboratory, Richland, WA, USA
| | - Lye Meng Markillie
- Environmental and Biological Sciences Directorate, Pacific Northwest National Laboratory, Richland, WA, USA
| | - David W Hoyt
- Environmental and Biological Sciences Directorate, Pacific Northwest National Laboratory, Richland, WA, USA
| | - Mary S Lipton
- Environmental and Biological Sciences Directorate, Pacific Northwest National Laboratory, Richland, WA, USA
| | - Steven J Hallam
- Department of Microbiology and Immunology, The University of British Columbia, Vancouver, BC, Canada
- ECOSCOPE Training Program, The University of British Columbia, Vancouver, BC, Canada
- Graduate Program in Bioinformatics, The University of British Columbia, Vancouver, BC, Canada
- Genome Science and Technology Program, The University of British Columbia, Vancouver, BC, Canada
- Life Sciences Institute, The University of British Columbia, Vancouver, BC, Canada
| | - Ryan M Ziels
- Department of Civil Engineering, The University of British Columbia, Vancouver, BC, Canada.
- Genome Science and Technology Program, The University of British Columbia, Vancouver, BC, Canada.
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12
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Fan J, Liu C, Zheng J, Song Y. Dithionite promoted microbial dechlorination of hexachlorobenzene while goethite further accelerated abiotic degradation by sulfidation in paddy soil. ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY 2023; 259:115047. [PMID: 37220705 DOI: 10.1016/j.ecoenv.2023.115047] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/14/2023] [Revised: 05/17/2023] [Accepted: 05/18/2023] [Indexed: 05/25/2023]
Abstract
It is of great scientific and practical importance to explore the mechanisms of accelerated degradation of Hexachlorobenzene (HCB) in soil. Both iron oxide and dithionite may promote the reductive dechlorination of HCB, but their effects on the microbial community and the biotic and abiotic mechanisms behind it remain unclear. This study investigated the effects of goethite, dithionite, and their interaction on microbial community composition and structure, and their potential contribution to HCB dechlorination in a paddy soil to reveal the underlying mechanism. The results showed that goethite addition alone did not significantly affect HCB dechlorination because the studied soil lacked iron-reducing bacteria. In contrast, dithionite addition significantly decreased the HCB contents by 44.0-54.9%, while the coexistence of dithionite and goethite further decreased the HCB content by 57.9-69.3%. Random Forest analysis suggested that indicator taxa (Paenibacillus, Acidothermus, Haliagium, G12-WMSP1, and Frankia), Pseudomonas, richness and Shannon's index of microbial community, and immobilized Fe content were dominant driving factors for HCB dechlorination. The dithionite addition, either with or without goethite, accelerated HCB anaerobic dechlorination by increasing microbial diversity and richness as well as the relative abundance of the above specific bacterial genera. When goethite and dithionite coexist, sulfidation of goethite with dithionite could remarkably increase FeS formation and then further promote HCB dechlorination rates. Overall, our results suggested that the combined application of goethite and dithionite could be a practicable strategy for the remediation of HCB contaminated soil.
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Affiliation(s)
- Jianling Fan
- Jiangsu Key Laboratory of Atmospheric Environment Monitoring and Pollution Control, Jiangsu Collaborative Innovation Center of Atmospheric Environment and Equipment Technology, School of Environmental Science and Engineering, Nanjing University of Information Science and Technology, 219 Ningliu Road, Nanjing 210044, China
| | - Cuiying Liu
- Jiangsu Key Laboratory of Agricultural Meteorology, School of Applied Meteorology, Nanjing University of Information Science and Technology, 219 Ningliu Road, Nanjing 210044, China.
| | - Jinjin Zheng
- School of Changwang, Nanjing University of Information Science and Technology, Nanjing 210044, China
| | - Yang Song
- CAS Key Laboratory of Soil Environment and Pollution Remediation, Institute of Soil Science, Chinese Academy of Sciences, Nanjing 210008, China
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13
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Song B, Wang Z, Wang L, Wang Q, Li J, Song M, Ali J, Wang Y, Glebov EM, Zhuang X. In Situ Enhanced Yields of Microbial Nanowires: The Key Role of Environmental Stress. ACS Biomater Sci Eng 2023. [PMID: 37146257 DOI: 10.1021/acsbiomaterials.3c00313] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/07/2023]
Abstract
The conductive microbial nanowires of Geobacter sulfurreducens serve as a model for long-range extracellular electron transfer (EET), which is considered a revolutionary "green" nanomaterial in the fields of bioelectronics, renewable energy, and bioremediation. However, there is no efficient pathway to induce microorganisms to express a large amount of microbial nanowires. Here, several strategies have been used to successfully induce the expression of microbial nanowires. Microbial nanowire expression was closely related to the concentration of electron acceptors. The microbial nanowire was around 17.02 μm in length, more than 3 times compared to its own length. The graphite electrode was used as an alternative electron acceptor by G. sulfurreducens, which obtained a fast start-up time of 44 h in microbial fuel cells (MFCs). Meanwhile, Fe(III) citrate-coated sugarcane carbon and biochar were prepared to test the applicability of these strategies in the actual microbial community. The unsatisfied EET efficiency between c-type cytochrome and extracellular insoluble electron receptors promoted the expression of microbial nanowires. Hence, microbial nanowires were proposed to be an effective survival strategy for G. sulfurreducens to cope with various environmental stresses. Based on this top-down strategy of artificially constructed microbial environmental stress, this study is of great significance for exploring more efficient methods to induce microbial nanowires expression.
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Affiliation(s)
- Bo Song
- Key Laboratory of Environmental Biotechnology, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing 100085, China
- College of Resources and Environment, University of Chinese Academy of Sciences, Beijing 100049, China
| | - Zhibin Wang
- College of Resources and Environment, University of Chinese Academy of Sciences, Beijing 100049, China
| | - Lei Wang
- Key Laboratory of Environmental Biotechnology, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing 100085, China
| | - Qi Wang
- Henan Institute of Advanced Technology, Zhengzhou University, Zhengzhou 450003, China
| | - Jiaxin Li
- Key Laboratory for Anisotropy and Texture of Materials (Ministry of Education), Northeastern University, Shenyang 110819, China
| | - Manjiao Song
- Key Laboratory of Environmental Biotechnology, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing 100085, China
| | - Jafar Ali
- Jilin Provincial Key Laboratory of Water Resources and Environment, Jilin University, Changchun 130021, China
| | - Yaxin Wang
- Key Laboratory of Environmental Biotechnology, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing 100085, China
- College of Resources and Environment, University of Chinese Academy of Sciences, Beijing 100049, China
| | - Evgeni M Glebov
- Voevodsky Institute of Chemical Kinetics and Combustion, Siberian Branch of the Russian Academy of Sciences, 3 Institutskaya Str., Novosibirsk 630090, Russian Federation
- Novosibirsk State University, 2 Pirogova Str., Novosibirsk 630090, Russian Federation
| | - Xuliang Zhuang
- Key Laboratory of Environmental Biotechnology, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing 100085, China
- College of Resources and Environment, University of Chinese Academy of Sciences, Beijing 100049, China
- State Key Laboratory of Tibetan Plateau Earth System, Environment and Resources (TPESER), Institute of Tibetan Plateau Research, Chinese Academy of Sciences, Beijing 100101, China
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14
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Huang L, Liu X, Rensing C, Yuan Y, Zhou S, Nealson KH. Light-independent anaerobic microbial oxidation of manganese driven by an electrosyntrophic coculture. THE ISME JOURNAL 2023; 17:163-171. [PMID: 36261509 PMCID: PMC9751303 DOI: 10.1038/s41396-022-01335-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/12/2022] [Revised: 10/08/2022] [Accepted: 10/11/2022] [Indexed: 11/05/2022]
Abstract
Anaerobic microbial manganese oxidation (AMMO) has been considered an ancient biological metabolism for Mn element cycling on Archaean Earth before the presence of oxygen. A light-dependent AMMO was recently observed under strictly anoxic conditions, providing a new proxy for the interpretation of the evolution of oxygenic photosynthesis. However, the feasibility of biotic Mn(II) oxidation in dark geological habitats that must have been abundant remains unknown. Therefore, we discovered that it would be possible to achieve AMMO in a light-independent electrosyntrophic coculture between Rhodopseudomonas palustris and Geobacter metallireducens. Transmission electron microscopy analysis revealed insoluble particle formation in the coculture with Mn(II) addition. X-ray diffraction and X-ray photoelectron spectroscopy analysis verified that these particles were a mixture of MnO2 and Mn3O4. The absence of Mn oxides in either of the monocultures indicated that the Mn(II)-oxidizing activity was induced via electrosyntrophic interactions. Radical quenching and isotopic experiments demonstrated that hydroxyl radicals (•OH) produced from H2O dissociation by R. palustris in the coculture contributed to Mn(II) oxidation. All these findings suggest a new, symbiosis-dependent and light-independent AMMO route, with potential importance to the evolution of oxygenic photosynthesis and the biogeochemical cycling of manganese on Archaean and modern Earth.
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Affiliation(s)
- Lingyan Huang
- Guangdong Key Laboratory of Environmental Catalysis and Health Risk Control, School of Environmental Science and Engineering, Institute of Environmental Health and Pollution Control, Guangdong University of Technology, Guangzhou, China
- Fujian Provincial Key Laboratory of Soil Environmental Health and Regulation, College of Resources and Environment, Fujian Agriculture and Forestry University, Fuzhou, China
| | - Xing Liu
- Fujian Provincial Key Laboratory of Soil Environmental Health and Regulation, College of Resources and Environment, Fujian Agriculture and Forestry University, Fuzhou, China
| | - Christopher Rensing
- Fujian Provincial Key Laboratory of Soil Environmental Health and Regulation, College of Resources and Environment, Fujian Agriculture and Forestry University, Fuzhou, China
| | - Yong Yuan
- Guangdong Key Laboratory of Environmental Catalysis and Health Risk Control, School of Environmental Science and Engineering, Institute of Environmental Health and Pollution Control, Guangdong University of Technology, Guangzhou, China.
| | - Shungui Zhou
- Fujian Provincial Key Laboratory of Soil Environmental Health and Regulation, College of Resources and Environment, Fujian Agriculture and Forestry University, Fuzhou, China
| | - Kenneth H Nealson
- Department of Earth Science, University of Southern California, Los Angeles, CA, USA
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15
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Guo X, Lai CY, Hartmann EM, Zhao HP. Heterotrophic denitrification: An overlooked factor that contributes to nitrogen removal in n-DAMO mixed culture. ENVIRONMENTAL RESEARCH 2023; 216:114802. [PMID: 36375502 DOI: 10.1016/j.envres.2022.114802] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/10/2022] [Revised: 11/05/2022] [Accepted: 11/10/2022] [Indexed: 06/16/2023]
Abstract
Nitrate/nitrite-dependent anaerobic methane oxidation (n-DAMO) has been recognized as a sustainable process for simultaneous removal of nitrogen and methane. The metabolisms of denitrifying anaerobic methanotrophs, including Candidatus Methanoperedens and Candidatus Methylomirabilis, have been well studied. However, potential roles of heterotrophs co-existing with these anaerobic methanotrophs are generally overlooked. In this study, we pulse-fed methane and nitrate into an anaerobic laboratory sequencing batch bioreactor and enriched a mixed culture with stable nitrate removal rate (NRR) of ∼28 mg NO3--N L-1 d-1. Microbial community analysis indicates abundant heterotrophs, e.g., Arenimonas (5.3%-18.9%) and Fimbriimonadales ATM1 (6.4%), were enriched together with denitrifying anaerobic methanotrophs Ca. Methanoperedens (10.8%-13.2%) and Ca. Methylomirabilis (27.4%-34.3%). The results of metagenomics and batch tests suggested that the denitrifying anaerobic methanotrophs were capable of generating methane-derived intermediates (i.e., formate and acetate), which were employed by non-methanotrophic heterotrophs for denitrification and biomass growth. These findings offer new insights into the roles of heterotrophs in n-DAMO mixed culture, which may help to optimize n-DAMO process for nitrogen removal from wastewater.
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Affiliation(s)
- Xu Guo
- MOE Key Lab of Environmental Remediation and Ecosystem Health, College of Environmental and Resource Science, Zhejiang University, Hangzhou, 310058, China
| | - Chun-Yu Lai
- MOE Key Lab of Environmental Remediation and Ecosystem Health, College of Environmental and Resource Science, Zhejiang University, Hangzhou, 310058, China
| | - Erica M Hartmann
- Department of Civil and Environmental Engineering, Northwestern University, IL, 60208, USA
| | - He-Ping Zhao
- MOE Key Lab of Environmental Remediation and Ecosystem Health, College of Environmental and Resource Science, Zhejiang University, Hangzhou, 310058, China.
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16
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Holmes DE, Zhou J, Smith JA, Wang C, Liu X, Lovley DR. Different outer membrane c-type cytochromes are involved in direct interspecies electron transfer to Geobacter or Methanosarcina species. MLIFE 2022; 1:272-286. [PMID: 38818222 PMCID: PMC10989804 DOI: 10.1002/mlf2.12037] [Citation(s) in RCA: 7] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 04/26/2022] [Revised: 07/21/2022] [Accepted: 07/26/2022] [Indexed: 06/01/2024]
Abstract
Direct interspecies electron transfer (DIET) may be most important in methanogenic environments, but mechanistic studies of DIET to date have primarily focused on cocultures in which fumarate was the terminal electron acceptor. To better understand DIET with methanogens, the transcriptome of Geobacter metallireducens during DIET-based growth with G. sulfurreducens reducing fumarate was compared with G. metallireducens grown in coculture with diverse Methanosarcina. The transcriptome of G. metallireducens cocultured with G. sulfurreducens was significantly different from those with Methanosarcina. Furthermore, the transcriptome of G. metallireducens grown with Methanosarcina barkeri, which lacks outer-surface c-type cytochromes, differed from those of G. metallireducens cocultured with M. acetivorans or M. subterranea, which have an outer-surface c-type cytochrome that serves as an electrical connect for DIET. Differences in G. metallireducens expression patterns for genes involved in extracellular electron transfer were particularly notable. Cocultures with c-type cytochrome deletion mutant strains, ∆Gmet_0930, ∆Gmet_0557 and ∆Gmet_2896, never became established with G. sulfurreducens but adapted to grow with all three Methanosarcina. Two porin-cytochrome complexes, PccF and PccG, were important for DIET; however, PccG was more important for growth with Methanosarcina. Unlike cocultures with G. sulfurreducens and M. acetivorans, electrically conductive pili were not needed for growth with M. barkeri. Shewanella oneidensis, another electroactive microbe with abundant outer-surface c-type cytochromes, did not grow via DIET. The results demonstrate that the presence of outer-surface c-type cytochromes does not necessarily confer the capacity for DIET and emphasize the impact of the electron-accepting partner on the physiology of the electron-donating DIET partner.
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Affiliation(s)
- Dawn E. Holmes
- Department of MicrobiologyUniversity of Massachusetts‐AmherstAmherstMassachusettsUSA
- Department of Physical and Biological ScienceWestern New England UniversitySpringfieldMassachusettsUSA
| | - Jinjie Zhou
- Department of MicrobiologyUniversity of Massachusetts‐AmherstAmherstMassachusettsUSA
- Institute for Advanced StudyShenzhen UniversityShenzhenChina
| | - Jessica A. Smith
- Department of MicrobiologyUniversity of Massachusetts‐AmherstAmherstMassachusettsUSA
- Department of Biomolecular SciencesCentral Connecticut State UniversityNew BritainConnecticutUSA
| | - Caiqin Wang
- Department of MicrobiologyUniversity of Massachusetts‐AmherstAmherstMassachusettsUSA
- College of EnvironmentZhejiang University of TechnologyHangzhouChina
| | - Xinying Liu
- Department of MicrobiologyUniversity of Massachusetts‐AmherstAmherstMassachusettsUSA
- College of Environmental Science and EngineeringBeijing Forestry UniversityBeijingChina
| | - Derek R. Lovley
- Department of MicrobiologyUniversity of Massachusetts‐AmherstAmherstMassachusettsUSA
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17
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Hengsbach JN, Sabel-Becker B, Ulber R, Holtmann D. Microbial electrosynthesis of methane and acetate—comparison of pure and mixed cultures. Appl Microbiol Biotechnol 2022; 106:4427-4443. [PMID: 35763070 PMCID: PMC9259517 DOI: 10.1007/s00253-022-12031-9] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/04/2022] [Revised: 06/13/2022] [Accepted: 06/14/2022] [Indexed: 12/01/2022]
Abstract
Abstract The electrochemical process of microbial electrosynthesis (MES) is used to drive the metabolism of electroactive microorganisms for the production of valuable chemicals and fuels. MES combines the advantages of electrochemistry, engineering, and microbiology and offers alternative production processes based on renewable raw materials and regenerative energies. In addition to the reactor concept and electrode design, the biocatalysts used have a significant influence on the performance of MES. Thus, pure and mixed cultures can be used as biocatalysts. By using mixed cultures, interactions between organisms, such as the direct interspecies electron transfer (DIET) or syntrophic interactions, influence the performance in terms of productivity and the product range of MES. This review focuses on the comparison of pure and mixed cultures in microbial electrosynthesis. The performance indicators, such as productivities and coulombic efficiencies (CEs), for both procedural methods are discussed. Typical products in MES are methane and acetate, therefore these processes are the focus of this review. In general, most studies used mixed cultures as biocatalyst, as more advanced performance of mixed cultures has been seen for both products. When comparing pure and mixed cultures in equivalent experimental setups a 3-fold higher methane and a nearly 2-fold higher acetate production rate can be achieved in mixed cultures. However, studies of pure culture MES for methane production have shown some improvement through reactor optimization and operational mode reaching similar performance indicators as mixed culture MES. Overall, the review gives an overview of the advantages and disadvantages of using pure or mixed cultures in MES. Key points • Undefined mixed cultures dominate as inoculums for the MES of methane and acetate, which comprise a high potential of improvement • Under similar conditions, mixed cultures outperform pure cultures in MES • Understanding the role of single species in mixed culture MES is essential for future industrial applications
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Affiliation(s)
- Jan-Niklas Hengsbach
- Department of Mechanical and Process Engineering, Institute of Bioprocess Engineering, Technical University Kaiserslautern, 67663, Kaiserslautern, Germany
| | - Björn Sabel-Becker
- Department of Life Science Engineering, Institute of Bioprocess Engineering and Pharmaceutical Technology, Technische Hochschule Mittelhessen, 35390, Giessen, Germany
| | - Roland Ulber
- Department of Mechanical and Process Engineering, Institute of Bioprocess Engineering, Technical University Kaiserslautern, 67663, Kaiserslautern, Germany.
| | - Dirk Holtmann
- Department of Life Science Engineering, Institute of Bioprocess Engineering and Pharmaceutical Technology, Technische Hochschule Mittelhessen, 35390, Giessen, Germany
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18
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Chen L, Fang W, Chang J, Liang J, Zhang P, Zhang G. Improvement of Direct Interspecies Electron Transfer via Adding Conductive Materials in Anaerobic Digestion: Mechanisms, Performances, and Challenges. Front Microbiol 2022; 13:860749. [PMID: 35432222 PMCID: PMC9005980 DOI: 10.3389/fmicb.2022.860749] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/23/2022] [Accepted: 03/09/2022] [Indexed: 11/30/2022] Open
Abstract
Anaerobic digestion is an effective and sustainable technology for resource utilization of organic wastes. Recently, adding conductive materials in anaerobic digestion to promote direct interspecies electron transfer (DIET) has become a hot topic, which enhances the syntrophic conversion of various organics to methane. This review comprehensively summarizes the recent findings of DIET mechanisms with different mediating ways. Meanwhile, the influence of DIET on anaerobic digestion performance and the underlying mechanisms of how DIET mediated by conductive materials influences the lag phase, methane production, and system stability are systematically explored. Furthermore, current challenges such as the unclear biological mechanisms, influences of non-DIET mechanisms, limitations of organic matters syntrophically oxidized by way of DIET, and problems in practical application of DIET mediated by conductive materials are discussed in detail. Finally, the future research directions for practical application of DIET are outlined.
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Affiliation(s)
- Le Chen
- Beijing Key Lab for Source Control Technology of Water Pollution, College of Environmental Science and Engineering, Beijing Forestry University, Beijing, China.,Engineering Research Center for Water Pollution Source Control and Eco-Remediation, College of Environmental Science and Engineering, Beijing Forestry University, Beijing, China
| | - Wei Fang
- Beijing Key Lab for Source Control Technology of Water Pollution, College of Environmental Science and Engineering, Beijing Forestry University, Beijing, China.,Engineering Research Center for Water Pollution Source Control and Eco-Remediation, College of Environmental Science and Engineering, Beijing Forestry University, Beijing, China
| | - Jianning Chang
- Beijing Key Lab for Source Control Technology of Water Pollution, College of Environmental Science and Engineering, Beijing Forestry University, Beijing, China.,Engineering Research Center for Water Pollution Source Control and Eco-Remediation, College of Environmental Science and Engineering, Beijing Forestry University, Beijing, China
| | - Jinsong Liang
- Beijing Key Lab for Source Control Technology of Water Pollution, College of Environmental Science and Engineering, Beijing Forestry University, Beijing, China.,Engineering Research Center for Water Pollution Source Control and Eco-Remediation, College of Environmental Science and Engineering, Beijing Forestry University, Beijing, China
| | - Panyue Zhang
- Beijing Key Lab for Source Control Technology of Water Pollution, College of Environmental Science and Engineering, Beijing Forestry University, Beijing, China.,Engineering Research Center for Water Pollution Source Control and Eco-Remediation, College of Environmental Science and Engineering, Beijing Forestry University, Beijing, China
| | - Guangming Zhang
- School of Energy and Environmental Engineering, Hebei University of Technology, Tianjin, China
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19
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Lin XQ, Li ZL, Nan J, Su JH, Liang B, Li CJ, Wang AJ. Biodegradation and metabolism of tetrabromobisphenol A in microbial fuel cell: Behaviors, dynamic pathway and the molecular ecological mechanism. JOURNAL OF HAZARDOUS MATERIALS 2021; 417:126104. [PMID: 34229393 DOI: 10.1016/j.jhazmat.2021.126104] [Citation(s) in RCA: 17] [Impact Index Per Article: 5.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/13/2021] [Revised: 04/29/2021] [Accepted: 05/10/2021] [Indexed: 06/13/2023]
Abstract
Tetrabromobisphenol A (TBBPA) has aroused widespread pollution in industrial wastewater. Microbial fuel cell (MFC) was proved powerful in organics degradation and simultaneous resource recovery during wastewater treatment. However, the TBBPA biotransformation potential, pathway and the related molecular mechanism remain poorly understood. In this study, the enhanced degradation and detoxification performance of TBBPA in MFC anode was confirmed, evidenced by the shorter degradation period (2.3 times shorter) and less generation of bisphenol A. UPLC-QTOF-MS analysis verified TBBPA metabolism went through reductive debromination, hydrolytic debromination, oxidative ring cleavage and o-methylation. Accompanied with those biochemical processes, the metabolites underwent dynamic changes. The distinctly decreased abundance and fewer interactions with other functional genera for the potential reductive dehalogenators (Pseudomonas, etc.) possibly led to the suppressed reductive debromination (5.1%) in the closed bioanode. Otherwise, the more abundant potential function bacteria with more collaborated interrelations, including hydrolytic dehalogenators (Acinetobacter, etc.), aromatics degrading bacteria (Geobacter, Holophaga, etc.) and electroactive bacteria (Geobacter, Desulfovibrio, etc.) made great sense to the enhanced hydrolytic debromination and detoxification of TBBPA. This study revealed that MFC anode was beneficial to TBBPA degradation and provided theoretical support for the decomposition and transformation of micro-pollutants in the municipal sewage treatment coupled with MFC process.
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Affiliation(s)
- Xiao-Qiu Lin
- State Key Laboratory of Urban Water Resources and Environment, School of Environment, Harbin Institute of Technology, Harbin 150090, China; School of Energy and Environmental Engineering, University of Science and Technology Beijing, Beijing 100083, China
| | - Zhi-Ling Li
- State Key Laboratory of Urban Water Resources and Environment, School of Environment, Harbin Institute of Technology, Harbin 150090, China.
| | - Jun Nan
- State Key Laboratory of Urban Water Resources and Environment, School of Environment, Harbin Institute of Technology, Harbin 150090, China
| | - Jian-Hong Su
- 514 Geological Brigade, Nanyuan Road, Shuangqiao District, Chengde City, Hebei Province, China
| | - Bin Liang
- School of Civil & Environmental Engineering, Harbin Institute of Technology (Shenzhen), Shenzhen 518055, China
| | - Cong-Ju Li
- School of Energy and Environmental Engineering, University of Science and Technology Beijing, Beijing 100083, China
| | - Ai-Jie Wang
- State Key Laboratory of Urban Water Resources and Environment, School of Environment, Harbin Institute of Technology, Harbin 150090, China; School of Civil & Environmental Engineering, Harbin Institute of Technology (Shenzhen), Shenzhen 518055, China
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20
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Olatunji KO, Ahmed NA, Ogunkunle O. Optimization of biogas yield from lignocellulosic materials with different pretreatment methods: a review. BIOTECHNOLOGY FOR BIOFUELS 2021; 14:159. [PMID: 34281615 PMCID: PMC8287798 DOI: 10.1186/s13068-021-02012-x] [Citation(s) in RCA: 19] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/24/2021] [Accepted: 07/09/2021] [Indexed: 05/10/2023]
Abstract
Population increase and industrialization has resulted in high energy demand and consumptions, and presently, fossil fuels are the major source of staple energy, supplying 80% of the entire consumption. This has contributed immensely to the greenhouse gas emission and leading to global warming, and as a result of this, there is a tremendous urgency to investigate and improve fresh and renewable energy sources worldwide. One of such renewable energy sources is biogas that is generated by anaerobic fermentation that uses different wastes such as agricultural residues, animal manure, and other organic wastes. During anaerobic digestion, hydrolysis of substrates is regarded as the most crucial stage in the process of biogas generation. However, this process is not always efficient because of the domineering stableness of substrates to enzymatic or bacteria assaults, but substrates' pretreatment before biogas production will enhance biogas production. The principal objective of pretreatments is to ease the accessibility of the enzymes to the lignin, cellulose, and hemicellulose which leads to degradation of the substrates. Hence, the use of pretreatment for catalysis of lignocellulose substrates is beneficial for the production of cost-efficient and eco-friendly process. In this review, we discussed different pretreatment technologies of hydrolysis and their restrictions. The review has shown that different pretreatments have varying effects on lignin, cellulose, and hemicellulose degradation and biogas yield of different substrate and the choice of pretreatment technique will devolve on the intending final products of the process.
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Affiliation(s)
- Kehinde Oladoke Olatunji
- Department of Mechanical Engineering Science, Faculty of Engineering and Built Environment, University of Johannesburg, Johannesburg, South Africa.
| | - Noor A Ahmed
- Department of Mechanical Engineering Science, Faculty of Engineering and Built Environment, University of Johannesburg, Johannesburg, South Africa
| | - Oyetola Ogunkunle
- Department of Mechanical Engineering Science, Faculty of Engineering and Built Environment, University of Johannesburg, Johannesburg, South Africa
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21
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Kinetic, metabolic, and statistical analytics: addressing metabolic transport limitations among organelles and microbial communities. Curr Opin Biotechnol 2021; 71:91-97. [PMID: 34293631 DOI: 10.1016/j.copbio.2021.06.024] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/03/2021] [Revised: 05/24/2021] [Accepted: 06/28/2021] [Indexed: 11/23/2022]
Abstract
Microbial organisms engage in a variety of metabolic interactions. A crucial part of these interactions is the exchange of molecules between different organelles, cells, and the environment. The main forces mediating this metabolic exchange are transporters. This transport can be difficult to measure experimentally because several transport mechanisms remain opaque. However, theoretical calculations about the inputs and outputs of cells via metabolic exchanges have enabled the successful inference of the workings of intra-organismal and inter-organismal systems. Kinetic, metabolic, and statistical modeling approaches in combination with omics data are enhancing our knowledge and understanding about metabolic exchange and mass resource allocation. This model-driven analytics approach can guide effective experimental design and yield new insights into biological function and control.
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22
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Arnolds KL, Dahlin LR, Ding L, Wu C, Yu J, Xiong W, Zuniga C, Suzuki Y, Zengler K, Linger JG, Guarnieri MT. Biotechnology for secure biocontainment designs in an emerging bioeconomy. Curr Opin Biotechnol 2021; 71:25-31. [PMID: 34091124 DOI: 10.1016/j.copbio.2021.05.004] [Citation(s) in RCA: 16] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/08/2021] [Revised: 04/21/2021] [Accepted: 05/10/2021] [Indexed: 12/28/2022]
Abstract
Genetically modified organisms (GMOs) have emerged as an integral component of a sustainable bioeconomy, with an array of applications in agriculture, bioenergy, and biomedicine. However, the rapid development of GMOs and associated synthetic biology approaches raises a number of biosecurity concerns related to environmental escape of GMOs, detection thereof, and impact upon native ecosystems. A myriad of genetic safeguards have been deployed in diverse microbial hosts, ranging from classical auxotrophies to global genome recoding. However, to realize the full potential of microbes as biocatalytic platforms in the bioeconomy, a deeper understanding of the fundamental principles governing microbial responsiveness to biocontainment constraints, and interactivity of GMOs with the environment, is required. Herein, we review recent analytical biotechnological advances and strategies to assess biocontainment and microbial bioproductivity, as well as opportunities for predictive systems biodesigns towards securing a viable bioeconomy.
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Affiliation(s)
| | - Lukas R Dahlin
- National Renewable Energy Laboratory, Golden, CO, United States
| | - Lin Ding
- J. Craig Venter Institute, La Jolla, CA, United States
| | - Chao Wu
- National Renewable Energy Laboratory, Golden, CO, United States
| | - Jianping Yu
- National Renewable Energy Laboratory, Golden, CO, United States
| | - Wei Xiong
- National Renewable Energy Laboratory, Golden, CO, United States
| | - Cristal Zuniga
- University of California, San Diego, La Jolla, CA, United States
| | - Yo Suzuki
- J. Craig Venter Institute, La Jolla, CA, United States
| | - Karsten Zengler
- University of California, San Diego, La Jolla, CA, United States
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23
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Nazem-Bokaee H, Hom EFY, Warden AC, Mathews S, Gueidan C. Towards a Systems Biology Approach to Understanding the Lichen Symbiosis: Opportunities and Challenges of Implementing Network Modelling. Front Microbiol 2021; 12:667864. [PMID: 34012428 PMCID: PMC8126723 DOI: 10.3389/fmicb.2021.667864] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/14/2021] [Accepted: 04/09/2021] [Indexed: 11/16/2022] Open
Abstract
Lichen associations, a classic model for successful and sustainable interactions between micro-organisms, have been studied for many years. However, there are significant gaps in our understanding about how the lichen symbiosis operates at the molecular level. This review addresses opportunities for expanding current knowledge on signalling and metabolic interplays in the lichen symbiosis using the tools and approaches of systems biology, particularly network modelling. The largely unexplored nature of symbiont recognition and metabolic interdependency in lichens could benefit from applying a holistic approach to understand underlying molecular mechanisms and processes. Together with ‘omics’ approaches, the application of signalling and metabolic network modelling could provide predictive means to gain insights into lichen signalling and metabolic pathways. First, we review the major signalling and recognition modalities in the lichen symbioses studied to date, and then describe how modelling signalling networks could enhance our understanding of symbiont recognition, particularly leveraging omics techniques. Next, we highlight the current state of knowledge on lichen metabolism. We also discuss metabolic network modelling as a tool to simulate flux distribution in lichen metabolic pathways and to analyse the co-dependence between symbionts. This is especially important given the growing number of lichen genomes now available and improved computational tools for reconstructing such models. We highlight the benefits and possible bottlenecks for implementing different types of network models as applied to the study of lichens.
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Affiliation(s)
- Hadi Nazem-Bokaee
- CSIRO Australian National Herbarium, Centre for Australian National Biodiversity Research, National Research Collections Australia, NCMI, Canberra, ACT, Australia.,CSIRO Land and Water, Canberra, ACT, Australia.,CSIRO Synthetic Biology Future Science Platform, Canberra, ACT, Australia
| | - Erik F Y Hom
- Department of Biology and Center for Biodiversity and Conservation Research, The University of Mississippi, University City, MS, United States
| | | | - Sarah Mathews
- Department of Biological Sciences, Louisiana State University, Baton Rouge, LA, United States
| | - Cécile Gueidan
- CSIRO Australian National Herbarium, Centre for Australian National Biodiversity Research, National Research Collections Australia, NCMI, Canberra, ACT, Australia
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24
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Wang R, Li H, Sun J, Zhang L, Jiao J, Wang Q, Liu S. Nanomaterials Facilitating Microbial Extracellular Electron Transfer at Interfaces. ADVANCED MATERIALS (DEERFIELD BEACH, FLA.) 2021; 33:e2004051. [PMID: 33325567 DOI: 10.1002/adma.202004051] [Citation(s) in RCA: 35] [Impact Index Per Article: 11.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/14/2020] [Revised: 09/03/2020] [Indexed: 06/12/2023]
Abstract
Electrochemically active bacteria can transport their metabolically generated electrons to anodes, or accept electrons from cathodes to synthesize high-value chemicals and fuels, via a process known as extracellular electron transfer (EET). Harnessing of this microbial EET process has led to the development of microbial bio-electrochemical systems (BESs), which can achieve the interconversion of electrical and chemical energy and enable electricity generation, hydrogen production, electrosynthesis, wastewater treatment, desalination, water and soil remediation, and sensing. Here, the focus is on the current understanding of the microbial EET process occurring at both the bacteria-electrode interface and the biotic interface, as well as some attempts to improve the EET by using various nanomaterials. The behavior of nanomaterials in different EET routes and their influence on the performance of BESs are described. The inherent mechanisms will guide rational design of EET-related materials and lead to a better understanding of EET mechanisms.
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Affiliation(s)
- Ruiwen Wang
- School of Life Science and Technology, State Key Laboratory of Urban Water Resource and Environment, Harbin Institute of Technology, Harbin, 150090, China
| | - Huidong Li
- School of Life Science and Technology, State Key Laboratory of Urban Water Resource and Environment, Harbin Institute of Technology, Harbin, 150090, China
| | - Jinzhi Sun
- School of Life Science and Technology, State Key Laboratory of Urban Water Resource and Environment, Harbin Institute of Technology, Harbin, 150090, China
| | - Lu Zhang
- School of Life Science and Technology, State Key Laboratory of Urban Water Resource and Environment, Harbin Institute of Technology, Harbin, 150090, China
| | - Jia Jiao
- School of Life Science and Technology, State Key Laboratory of Urban Water Resource and Environment, Harbin Institute of Technology, Harbin, 150090, China
| | - Qingqing Wang
- School of Chemistry and Chemical Engineering, Micro- and Nanotechnology Research Center, Harbin Institute of Technology, Harbin, 150090, China
| | - Shaoqin Liu
- School of Life Science and Technology, State Key Laboratory of Urban Water Resource and Environment, Harbin Institute of Technology, Harbin, 150090, China
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25
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Desmond-Le Quéméner E, Moscoviz R, Bernet N, Marcus A. Modeling of interspecies electron transfer in anaerobic microbial communities. Curr Opin Biotechnol 2021; 67:49-57. [PMID: 33465544 DOI: 10.1016/j.copbio.2020.12.019] [Citation(s) in RCA: 11] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/04/2020] [Revised: 12/19/2020] [Accepted: 12/23/2020] [Indexed: 12/14/2022]
Abstract
Interspecies electron transfer (IET) is a key phenomenon in anaerobic ecosystems, which is traditionally modeled as hydrogen transfer. Recently discovered alternative mediated IET (MIET) or direct IET (DIET) offer exciting alternative mechanisms of microbial partnerships that could lead to new strategies for the improvement of biotechnologies. Here, we analyze mathematical modeling of DIET and MIET in anaerobic ecosystems. Bioenergetics approaches already enable the evaluation of different energy sharing scenarios between microorganisms and give interesting clues on redox mediators and on possible ways of driving microbial communities relying on IET. The modeling of DIET kinetics however is currently only in its infancy. Recent concepts introduced for the modeling of electroactive biofilms should be further exploited. Recent modeling examples confirms the potential of DIET to increase the IET rates compared to H2-MIET, but also point out the need for additional characterizations of biological components supporting IET to improve predictions.
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Affiliation(s)
| | - Roman Moscoviz
- SUEZ, Centre International de Recherche Sur l'Eau et l'Environnement (CIRSEE), Le Pecq, France
| | - Nicolas Bernet
- INRAE, Univ Montpellier, LBE, 102 avenue des Etangs, 11100, Narbonne, France
| | - Andrew Marcus
- Biodesign Swette Center for Environmental Biotechnology, Arizona State University, Tempe, AZ, USA
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26
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García-Jiménez B, Torres-Bacete J, Nogales J. Metabolic modelling approaches for describing and engineering microbial communities. Comput Struct Biotechnol J 2020; 19:226-246. [PMID: 33425254 PMCID: PMC7773532 DOI: 10.1016/j.csbj.2020.12.003] [Citation(s) in RCA: 39] [Impact Index Per Article: 9.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/18/2020] [Revised: 12/02/2020] [Accepted: 12/05/2020] [Indexed: 12/17/2022] Open
Abstract
Microbes do not live in isolation but in microbial communities. The relevance of microbial communities is increasing due to growing awareness of their influence on a huge number of environmental, health and industrial processes. Hence, being able to control and engineer the output of both natural and synthetic communities would be of great interest. However, most of the available methods and biotechnological applications involving microorganisms, both in vivo and in silico, have been developed in the context of isolated microbes. In vivo microbial consortia development is extremely difficult and costly because it implies replicating suitable environments in the wet-lab. Computational approaches are thus a good, cost-effective alternative to study microbial communities, mainly via descriptive modelling, but also via engineering modelling. In this review we provide a detailed compilation of examples of engineered microbial communities and a comprehensive, historical revision of available computational metabolic modelling methods to better understand, and rationally engineer wild and synthetic microbial communities.
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Affiliation(s)
- Beatriz García-Jiménez
- Department of Systems Biology, Centro Nacional de Biotecnología (CSIC), 28049 Madrid, Spain
- Centro de Biotecnología y Genómica de Plantas (CBGP, UPM-INIA), Universidad Politécnica de Madrid (UPM), Instituto Nacional de Investigación y Tecnología Agraria y Alimentaria (INIA), Campus de Montegancedo-UPM, 28223-Pozuelo de Alarcón, Madrid, Spain
| | - Jesús Torres-Bacete
- Department of Systems Biology, Centro Nacional de Biotecnología (CSIC), 28049 Madrid, Spain
| | - Juan Nogales
- Department of Systems Biology, Centro Nacional de Biotecnología (CSIC), 28049 Madrid, Spain
- Interdisciplinary Platform for Sustainable Plastics towards a Circular Economy‐Spanish National Research Council (SusPlast‐CSIC), Madrid, Spain
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27
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Zhang Y, Zhang Z, Liu W, Chen Y. New applications of quinone redox mediators: Modifying nature-derived materials for anaerobic biotransformation process. THE SCIENCE OF THE TOTAL ENVIRONMENT 2020; 744:140652. [PMID: 32693271 DOI: 10.1016/j.scitotenv.2020.140652] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/17/2020] [Revised: 06/29/2020] [Accepted: 06/29/2020] [Indexed: 06/11/2023]
Abstract
Due to their wide-distribution, high-biocompatibility and low-cost, nature-derived quinone redox mediators (NDQRM) have shown great potential in bioremediation through mediating electron transfers between microorganisms and between microorganisms and contaminants in anaerobic biotransformation processes. It is obvious that their performance in bioremediation was limited by the availability of quinone-based groups in NDQRM. A sustainable solution is to enhance the electron transfer capacity and retention capacity by the modification of NDQRM. Therefore, this review comprehensively summarized the modification techniques of NDQRM according to their multiple roles in anaerobic biotransformation systems. In addition, their potential applications in greenhouse gas mitigation, contaminant degradation in anaerobic digestion, contaminant bioelectrochemical remediation and energy recovery were discussed. And the problems that need to be addressed in the future were pointed out. The obtained knowledge would promote the exploration of novel NDQRM, and provide suggestions for the design of anaerobic consortia in biotransformation systems.
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Affiliation(s)
- Yu Zhang
- State Key Laboratory of Pollution Control and Resources Reuse, School of Environmental Science and Engineering, Tongji University, 1239 Siping Road, Shanghai 200092, China
| | - Zhengzhe Zhang
- State Key Laboratory of Pollution Control and Resources Reuse, School of Environmental Science and Engineering, Tongji University, 1239 Siping Road, Shanghai 200092, China
| | - Weiguo Liu
- College of Resources and Environment Science, Key Laboratory of Oasis Ecology, Ministry of Education, Xinjiang University, Urumqi 830046, China
| | - Yinguang Chen
- State Key Laboratory of Pollution Control and Resources Reuse, School of Environmental Science and Engineering, Tongji University, 1239 Siping Road, Shanghai 200092, China.
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28
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Wei W, Plymale A, Zhu Z, Ma X, Liu F, Yu XY. In Vivo Molecular Insights into Syntrophic Geobacter Aggregates. Anal Chem 2020; 92:10402-10411. [PMID: 32614167 DOI: 10.1021/acs.analchem.0c00653] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/24/2023]
Abstract
Direct interspecies electron transfer (DIET) has been considered as a novel and highly efficient strategy in both natural anaerobic environments and artificial microbial fuel cells. A syntrophic model consisting of Geobacter metallireducens and Geobacter sulfurreducens was studied in this work. We conducted in vivo molecular mapping of the outer surface of the syntrophic community as the interface of nutrients and energy exchange. System for Analysis at the Liquid Vacuum Interface combined with time-of-flight secondary ion mass spectrometry was employed to capture the molecular distribution of syntrophic Geobacter communities in the living and hydrated state. Principal component analysis with selected peaks revealed that syntrophic Geobacter aggregates were well differentiated from other control samples, including syntrophic planktonic cells, pure cultured planktonic cells, and single population biofilms. Our in vivo imaging indicated that a unique molecular surface was formed. Specifically, aromatic amino acids, phosphatidylethanolamine components, and large water clusters were identified as key components that favored the DIET of syntrophic Geobacter aggregates. Moreover, the molecular changes in depths of the Geobacter aggregates were captured using dynamic depth profiling. Our findings shed new light on the interface components supporting electron transfer in syntrophic communities based on in vivo molecular imaging.
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Affiliation(s)
- Wenchao Wei
- Key Laboratory of Coastal Biology and Utilization, Yantai Institute of Coastal Zone Research, Chinese Academy of Sciences, Yantai, Shandong 264003, P. R. China.,Energy and Environment Directorate, Pacific Northwest National Laboratory, Richland, Washington 99352, United States.,University of Chinese Academy of Sciences, Beijing 100049, P. R. China
| | - Andrew Plymale
- Energy and Environment Directorate, Pacific Northwest National Laboratory, Richland, Washington 99352, United States
| | - Zihua Zhu
- Environmental and Molecular Science Laboratory, Pacific Northwest National Laboratory, Richland, Washington 99352, United States
| | - Xiang Ma
- Department of Chemistry, Grand View University, Des Moines, Iowa 50316, United States
| | - Fanghua Liu
- Key Laboratory of Coastal Biology and Utilization, Yantai Institute of Coastal Zone Research, Chinese Academy of Sciences, Yantai, Shandong 264003, P. R. China
| | - Xiao-Ying Yu
- Energy and Environment Directorate, Pacific Northwest National Laboratory, Richland, Washington 99352, United States
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29
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Liu Z, Zhou A, Liu H, Wang S, Liu W, Wang A, Yue X. Extracellular polymeric substance decomposition linked to hydrogen recovery from waste activated sludge: Role of peracetic acid and free nitrous acid co-pretreatment in a prefermentation-bioelectrolysis cascading system. WATER RESEARCH 2020; 176:115724. [PMID: 32222546 DOI: 10.1016/j.watres.2020.115724] [Citation(s) in RCA: 35] [Impact Index Per Article: 8.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/14/2019] [Revised: 03/13/2020] [Accepted: 03/15/2020] [Indexed: 06/10/2023]
Abstract
Free nitrous acid (FNA) has been recently reported to be an effective and eco-friendly inactivator for waste activated sludge (WAS), while the limited decomposition of the extracellular polymeric substance (EPS) matrix hampers resource recovery from WAS. This work employed peracetic acid (PAA) to assist FNA and explored the contribution of co-pretreatment to hydrogen recovery in a prefermentation-bioelectrolysis cascading system. The results showed that co-pretreatment led to approximately 8.8% and 20.4% increases in the exfoliation of particulate proteins and carbohydrates, respectively, from tightly bound EPS (TB-EPS) over that of sole FNA pretreatment. Electron paramagnetic resonance analysis verified that the synergistic effect of FNA, PAA and various generated free radicals was the essential process. This effect further promoted the accumulation of volatile fatty acids (VFAs) after 96 h of prefermentation, and the peak concentration in co-pretreated WAS (AD-FPWAS) was approximately 2.5-fold that in sole FNA-pretreated WAS (AD-FWAS). Subsequently, the cascading utilization of organics in the bioelectrolysis step contributed to efficient hydrogen generation. A total of 10.8 ± 0.3 mg H2/g VSS was harvested in microbial electrolysis cells (MECs) fed with AD-FPWAS, while 6.2 ± 0.1 mg H2/g VSS was obtained from AD-FWAS. X-ray photoelectron spectroscopy (XPS) revealed the effective decomposition of the phospholipid bilayer in the cytomembrane and the transformation of macromolecular organics into VFAs and hydrogen in the cascading system. Further microbial community analysis demonstrated that co-pretreatment enhanced the accumulation of functional consortia, including anaerobic fermentative bacteria (AFB, 28.1%), e.g., Macellibacteroides (6.3%) and Sedimentibacter (6.9%), and electrochemically active bacteria (EAB, 57.0%), e.g., Geobacter (39.0%) and Pseudomonas (13.6%), in the prefermentation and MEC steps, respectively. The possible synergetic and competitive relationships among AFB, EAB, homo-acetogens, nitrate-reducing bacteria and methanogens were explored by molecular ecological network analysis. From an environmental and economic perspective, this promising FNA and PAA co-pretreatment approach provides new insight for energy recovery from WAS biorefineries.
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Affiliation(s)
- Zhihong Liu
- College of Environmental Science and Engineering, Taiyuan University of Technology, Taiyuan, China
| | - Aijuan Zhou
- College of Environmental Science and Engineering, Taiyuan University of Technology, Taiyuan, China; State Key Laboratory of Pollution Control and Resource Reuse, Tongji University, Shanghai, 200092, China.
| | - Hongyan Liu
- College of Environmental Science and Engineering, Taiyuan University of Technology, Taiyuan, China
| | - Sufang Wang
- College of Environmental Science and Engineering, Taiyuan University of Technology, Taiyuan, China
| | - Wenzong Liu
- Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing, China
| | - Aijie Wang
- Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing, China; State Key Laboratory of Urban Water Resource and Environment, Harbin Institute of Technology (SKLUWRE, HIT), Harbin, China
| | - Xiuping Yue
- College of Environmental Science and Engineering, Taiyuan University of Technology, Taiyuan, China; Shanxi Engineer Research Institute of Sludge Disposition and Resources, Taiyuan, China.
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30
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Zhang J, Liu GC, Dai XL, Wang J, Jin MH, Mi NN, Wang SQ. The N-terminus of MTRR plays a role in MTR reactivation cycle beyond electron transfer. Bioorg Chem 2020; 100:103836. [PMID: 32353563 DOI: 10.1016/j.bioorg.2020.103836] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/03/2019] [Revised: 03/20/2020] [Accepted: 04/06/2020] [Indexed: 11/26/2022]
Abstract
In eucaryotic cells, methionine synthase reductase (MSR/MTRR) is capable of dominating the folate-homocysteine metabolism as an irreplaceable partner in electron transfer for regeneration of methionine synthase. The N-terminus of MTRR containing a conserved domain of FMN_Red is closely concerned with the oxidation-reduction process. Maternal substitution of I22M in this domain can bring about pregnancy with high risk of spina bifida. A new variation of Arg2del was identified from a female conceiving a fetus with spina bifida cystica. Although the deletion is far from the N-terminal FMN_Red domain, the biochemical features of the variant had been seriously investigated. Curiously, the deletion of arginine(s) of MTRR could not affect the electron relay, if only the FMN_Red domain was intact, but by degrees reduced the ability to promote MTR catalysis in methionine formation. Confirmation of the interaction between the isolated MTRR N-terminal polypeptide and MTR suggested that the native MTRR N-terminus might play an extra role in MTR function. The tandem arginines at the end of MTRR N-terminus conferring high affinity to MTR were indispensable for stimulating methyltransferase activity perhaps via triggering allosteric effect that could be attenuated by removal of the arginine(s). It was concluded that MTRR could also propel MTR enzymatic reaction relying on the tandem arginines at N-terminus more than just only implicated in electron transfer in MTR reactivation cycle. Perturbance of the enzymatic cooperation due to the novel deletion could possibly invite spina bifida in clinics.
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Affiliation(s)
- Jun Zhang
- The Department of Cell Biology & Genetics, Chongqing Medical University, Chongqing 400016, China; Institute of Molecular Medicine and Oncology, Chongqing Medical University, Chongqing 400016, China.
| | - Gui-Cen Liu
- The Department of Cell Biology & Genetics, Chongqing Medical University, Chongqing 400016, China
| | - Xiao-Lu Dai
- The Department of Cell Biology & Genetics, Chongqing Medical University, Chongqing 400016, China
| | - Juan Wang
- The Department of Cell Biology & Genetics, Chongqing Medical University, Chongqing 400016, China
| | - Mu-Hua Jin
- The Department of Cell Biology & Genetics, Chongqing Medical University, Chongqing 400016, China
| | - Nan-Nan Mi
- The Department of Cell Biology & Genetics, Chongqing Medical University, Chongqing 400016, China
| | - Shu-Qin Wang
- The Department of Cell Biology & Genetics, Chongqing Medical University, Chongqing 400016, China
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31
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Gaffney EM, Grattieri M, Beaver K, Pham J, McCartney C, Minteer SD. Unveiling salinity effects on photo-bioelectrocatalysis through combination of bioinformatics and electrochemistry. Electrochim Acta 2020; 337. [PMID: 32308212 DOI: 10.1016/j.electacta.2020.135731] [Citation(s) in RCA: 12] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
Abstract
Little is known about the adaptation strategies utilized by photosynthetic microorganisms to cope with salinity changes happening in the environment, and the effects on microbial electrochemical technologies. Herein, bioinformatics analysis revealed a metabolism shift in Rhodobacter capsulatus resulting from salt stress, with changes in gene expression allowing accumulation of compatible solutes to balance osmotic pressure, together with the up-regulation of the nitrogen fixation cycle, an electron sink of the photosynthetic electron transfer chain. Using the transcriptome evidence of hindered electron transfer in the photosynthetic electron transport chain induced by adaption to salinity, increased understanding of photo-bioelectrocatalysis under salt stress is achieved. Accumulation of glycine-betaine allows immediate tuning of salinity tolerance but does not provide cell stabilization, with a 40 ± 20% loss of photo-bioelectrocatalysis in a 60 min time scale. Conversely, exposure to or inducing the expression of the Rhodobacter capsulatus gene transfer agent tunes salinity tolerance and increases cell stability. This work provides a proof of concept for the combination of bioinformatics and electrochemical tools to investigate microbial electrochemical systems, opening exciting future research opportunities.
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Affiliation(s)
- Erin M Gaffney
- Department of Chemistry, University of Utah, 315 S 1400 E Room 2020, Salt Lake City, 84112, Utah, USA
| | - Matteo Grattieri
- Department of Chemistry, University of Utah, 315 S 1400 E Room 2020, Salt Lake City, 84112, Utah, USA
| | - Kevin Beaver
- Department of Chemistry, University of Utah, 315 S 1400 E Room 2020, Salt Lake City, 84112, Utah, USA
| | - Jennie Pham
- Department of Chemistry, University of Utah, 315 S 1400 E Room 2020, Salt Lake City, 84112, Utah, USA
| | - Caitlin McCartney
- Department of Chemistry, University of Utah, 315 S 1400 E Room 2020, Salt Lake City, 84112, Utah, USA.,Departments of Chemistry, Brown University, 324 Brook Street Box H, Providence, 02912, Rhode Island, USA
| | - Shelley D Minteer
- Department of Chemistry, University of Utah, 315 S 1400 E Room 2020, Salt Lake City, 84112, Utah, USA
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32
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Gardner JJ, Hodge BMS, Boyle NR. Multiscale Multiobjective Systems Analysis (MiMoSA): an advanced metabolic modeling framework for complex systems. Sci Rep 2019; 9:16948. [PMID: 31740694 PMCID: PMC6861322 DOI: 10.1038/s41598-019-53188-0] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/29/2019] [Accepted: 10/29/2019] [Indexed: 12/11/2022] Open
Abstract
In natural environments, cells live in complex communities and experience a high degree of heterogeneity internally and in the environment. Even in 'ideal' laboratory environments, cells can experience a high degree of heterogeneity in their environments. Unfortunately, most of the metabolic modeling approaches that are currently used assume ideal conditions and that each cell is identical, limiting their application to pure cultures in well-mixed vessels. Here we describe our development of Multiscale Multiobjective Systems Analysis (MiMoSA), a metabolic modeling approach that can track individual cells in both space and time, track the diffusion of nutrients and light and the interaction of cells with each other and the environment. As a proof-of concept study, we used MiMoSA to model the growth of Trichodesmium erythraeum, a filamentous diazotrophic cyanobacterium which has cells with two distinct metabolic modes. The use of MiMoSA significantly improves our ability to predictively model metabolic changes and phenotype in more complex cell cultures.
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Affiliation(s)
- Joseph J Gardner
- Chemical & Biological Engineering, Colorado School of Mines, 1613 Illinois St., Golden, CO, 80403, USA
| | - Bri-Mathias S Hodge
- Chemical & Biological Engineering, Colorado School of Mines, 1613 Illinois St., Golden, CO, 80403, USA.,National Renewable Energy Laboratory, 15013 Denver West Parkway, Golden, CO, 80401, USA.,Electrical, Computer and Energy Engineering, 425 UCB, University of Colorado, Boulder, CO, 80309, USA
| | - Nanette R Boyle
- Chemical & Biological Engineering, Colorado School of Mines, 1613 Illinois St., Golden, CO, 80403, USA.
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Environmental stimuli drive a transition from cooperation to competition in synthetic phototrophic communities. Nat Microbiol 2019; 4:2184-2191. [PMID: 31591554 DOI: 10.1038/s41564-019-0567-6] [Citation(s) in RCA: 40] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/01/2018] [Accepted: 08/21/2019] [Indexed: 12/28/2022]
Abstract
Phototrophic communities of photosynthetic algae or cyanobacteria and heterotrophic bacteria or fungi are pervasive throughout the environment1. How interactions between members contribute to the resilience and affect the fitness of phototrophic communities is not fully understood2,3. Here, we integrated metatranscriptomics, metabolomics and phenotyping with computational modelling to reveal condition-dependent secretion and cross-feeding of metabolites in a synthetic community. We discovered that interactions between members are highly dynamic and are driven by the availability of organic and inorganic nutrients. Environmental factors, such as ammonia concentration, influenced community stability by shifting members from collaborating to competing. Furthermore, overall fitness was dependent on genotype and streamlined genomes improved growth of the entire community. Our mechanistic framework provides insights into the physiology and metabolic response to environmental and genetic perturbation of these ubiquitous microbial associations.
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Lin XQ, Li ZL, Liang B, Zhai HL, Cai WW, Nan J, Wang AJ. Accelerated microbial reductive dechlorination of 2,4,6-trichlorophenol by weak electrical stimulation. WATER RESEARCH 2019; 162:236-245. [PMID: 31279315 DOI: 10.1016/j.watres.2019.06.068] [Citation(s) in RCA: 127] [Impact Index Per Article: 25.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/30/2019] [Revised: 06/07/2019] [Accepted: 06/26/2019] [Indexed: 05/20/2023]
Abstract
Microbial reductive dechlorination of chlorinated aromatics frequently suffers from the long dechlorination period and the generation of toxic metabolites. Biocathode bioelectrochemical systems were verified to be effective in the degradation of various refractory pollutants. However, the electrochemical and microbial related working mechanisms for bio-dechlorination by electro-stimulation remain poorly understood. In this study, we reported the significantly improved 2,4,6-trichlorophenol dechlorination activity through the weak electro-stimulation (cathode potential of -0.36 V vs. SHE), as evidenced by the 3.1 times higher dechlorination rate and the complete dechlorination ability with phenol as the end dechlorination product. The high reductive dechlorination rate (20.8 μM/d) could be maintained by utilizing electrode as an effective electron donor (coulombic efficiency of 82.3 ± 4.8%). Cyclic voltammetry analysis of the cathodic biofilm gave the direct evidences of the cathodic respiration with the improved and positive-shifted reduction peaks of 2,4,6-TCP, 2,4-DCP and 4-CP. The optimal 2,4,6-TCP reductive dechlorination rate (24.2 μM/d) was obtained when a small amount of lactate (2 mM) was added, and the generation of H2 and CH4 were accompanied due to the biological fermentation and methanogenesis. The electrical stimulation significantly altered the cathodic biofilm structure and composition with some potential dechlorinators (like Acetobacterium) predominated. The microbial interactions in the ecological network of cathodic biofilm were more simplified than the planktonic community. However, some potential dechlorinators (Acetobacterium, Desulfovibrio, etc.) shared more positive interactions. The co-existence and possible cooperative relationships between potential dechlorinators and fermenters (Sedimentibacter, etc.) were revealed. Meanwhile, the competitive interrelations between potential dechlorinators and methanogens (Methanomassiliicoccus) were found. In the network of plankton, the fermenters and methanogens possessed the more positive interrelations. Electro-stimulation at the cathodic potential of -0.36 V selectively enhanced the dechlorination function, while it showed little influence on either fermentation or methanogenesis process. The study gave suggestions for the enhanced bioremediation of chlorinated aromatics, in views of the electro-stimulation capacity, efficiency and microbial interrelations related microbial mechanism.
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Affiliation(s)
- Xiao-Qiu Lin
- State Key Laboratory of Urban Water Resources and Environment, School of Environment, Harbin Institute of Technology, Harbin, 150090, China
| | - Zhi-Ling Li
- State Key Laboratory of Urban Water Resources and Environment, School of Environment, Harbin Institute of Technology, Harbin, 150090, China.
| | - Bin Liang
- Key Laboratory of Environmental Biotechnology, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing, 100085, PR China
| | - Hong-Liang Zhai
- State Key Laboratory of Urban Water Resources and Environment, School of Environment, Harbin Institute of Technology, Harbin, 150090, China
| | - Wei-Wei Cai
- State Key Laboratory of Urban Water Resources and Environment, School of Environment, Harbin Institute of Technology, Harbin, 150090, China
| | - Jun Nan
- State Key Laboratory of Urban Water Resources and Environment, School of Environment, Harbin Institute of Technology, Harbin, 150090, China
| | - Ai-Jie Wang
- State Key Laboratory of Urban Water Resources and Environment, School of Environment, Harbin Institute of Technology, Harbin, 150090, China; Key Laboratory of Environmental Biotechnology, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing, 100085, PR China.
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35
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Jin Y, Li Z, Zhou E, Lekbach Y, Xu D, Jiang S, Wang F. Sharing riboflavin as an electron shuttle enhances the corrosivity of a mixed consortium of Shewanella oneidensis and Bacillus licheniformis against 316L stainless steel. Electrochim Acta 2019. [DOI: 10.1016/j.electacta.2019.05.094] [Citation(s) in RCA: 23] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/08/2023]
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36
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Tan W, Yuan Y, Zhao X, Dang Q, Yuan Y, Li R, Cui D, Xi B. Soil solid-phase organic matter-mediated microbial reduction of iron minerals increases with land use change sequence from fallow to paddy fields. THE SCIENCE OF THE TOTAL ENVIRONMENT 2019; 676:378-386. [PMID: 31048168 DOI: 10.1016/j.scitotenv.2019.04.288] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/31/2019] [Revised: 04/11/2019] [Accepted: 04/19/2019] [Indexed: 06/09/2023]
Abstract
The microbial reduction of Fe(III) minerals (MRF) is an important process in paddy soil because it can affect the biogeochemical cycles of many major and trace elements. Natural organic matter (NOM) that mainly exists in the form of solid phase in soil can mediate MRF through electron shuttling functionality. However, whether a link exists between solid-phase NOM-mediated MRF in soil and the age of paddy field since the reclamation on fallow is unclear. Here, we use microbial reduction method to assess the solid-phase NOM-mediated MRF of paddy soils with different reclamation ages. The results show that solid-phase NOM-mediated MRF exhibits a positive response to land use change sequence from fallow to paddy field, indicating that the long-term natural development of paddy field favors the electron shuttling of NOM between cells and Fe(III) minerals. This increase in the electron shuttling of NOM is not due to the increase in the redox functional groups of NOM, but may be attributed to the formation of NOM-mineral complex through the synergistic increases in NOM content and transformation of soil texture from clay loam to loam. The decrease in the redox potential of Fe(III) minerals in soil caused by decreased pH and the increase in Fe content in the organic matter-complexed form may also partly facilitate electron transfer from NOM to Fe(III) minerals. Our work is useful in predicting the role of soil solid-phase NOM in mediating MRF in the context of long-term reclamation of paddy field and provides guidance for the environmental management of paddy fields.
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Affiliation(s)
- Wenbing Tan
- State Key Laboratory of Environmental Criteria and Risk Assessment, Chinese Research Academy of Environmental Sciences, Beijing 100012, China; State Environmental Protection Key Laboratory of Simulation and Control of Groundwater Pollution, Chinese Research Academy of Environmental Sciences, Beijing 100012, China
| | - Ying Yuan
- State Key Laboratory of Environmental Criteria and Risk Assessment, Chinese Research Academy of Environmental Sciences, Beijing 100012, China; State Environmental Protection Key Laboratory of Simulation and Control of Groundwater Pollution, Chinese Research Academy of Environmental Sciences, Beijing 100012, China
| | - Xinyu Zhao
- State Key Laboratory of Environmental Criteria and Risk Assessment, Chinese Research Academy of Environmental Sciences, Beijing 100012, China; State Environmental Protection Key Laboratory of Simulation and Control of Groundwater Pollution, Chinese Research Academy of Environmental Sciences, Beijing 100012, China
| | - Qiuling Dang
- State Key Laboratory of Environmental Criteria and Risk Assessment, Chinese Research Academy of Environmental Sciences, Beijing 100012, China; College of Water Sciences, Beijing Normal University, Beijing 100875, China
| | - Ye Yuan
- School of Water Conservancy and Civil Engineering, Northeast Agricultural University, Harbin 150030, China
| | - Renfei Li
- State Key Laboratory of Environmental Criteria and Risk Assessment, Chinese Research Academy of Environmental Sciences, Beijing 100012, China; State Environmental Protection Key Laboratory of Simulation and Control of Groundwater Pollution, Chinese Research Academy of Environmental Sciences, Beijing 100012, China
| | - Dongyu Cui
- State Key Laboratory of Environmental Criteria and Risk Assessment, Chinese Research Academy of Environmental Sciences, Beijing 100012, China; State Environmental Protection Key Laboratory of Simulation and Control of Groundwater Pollution, Chinese Research Academy of Environmental Sciences, Beijing 100012, China
| | - Beidou Xi
- State Key Laboratory of Environmental Criteria and Risk Assessment, Chinese Research Academy of Environmental Sciences, Beijing 100012, China; State Environmental Protection Key Laboratory of Simulation and Control of Groundwater Pollution, Chinese Research Academy of Environmental Sciences, Beijing 100012, China.
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Libby E, Hébert-Dufresne L, Hosseini SR, Wagner A. Syntrophy emerges spontaneously in complex metabolic systems. PLoS Comput Biol 2019; 15:e1007169. [PMID: 31339876 PMCID: PMC6655585 DOI: 10.1371/journal.pcbi.1007169] [Citation(s) in RCA: 22] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/09/2019] [Accepted: 06/07/2019] [Indexed: 11/30/2022] Open
Abstract
Syntrophy allows a microbial community as a whole to survive in an environment, even though individual microbes cannot. The metabolic interdependence typical of syntrophy is thought to arise from the accumulation of degenerative mutations during the sustained co-evolution of initially self-sufficient organisms. An alternative and underexplored possibility is that syntrophy can emerge spontaneously in communities of organisms that did not co-evolve. Here, we study this de novo origin of syntrophy using experimentally validated computational techniques to predict an organism’s viability from its metabolic reactions. We show that pairs of metabolisms that are randomly sampled from a large space of possible metabolism and viable on specific primary carbon sources often become viable on new carbon sources by exchanging metabolites. The same biochemical reactions that are required for viability on primary carbon sources also confer viability on novel carbon sources. Our observations highlight a new and important avenue for the emergence of metabolic adaptations and novel ecological interactions. By exchanging resources, the members of a microbial community can survive in environments where individual species cannot. Despite the abundance of such syntrophy, little is known about its evolutionary origin. The predominant hypothesis is that syntrophy arises when originally independent organisms in the same community become interdependent by accumulating mutations. In this view, syntrophy arises when organisms co-evolve. In sharp contrast we find that different metabolism can interact syntrophically without a shared evolutionary history. We show that syntrophy is an inherent and emergent property of the complex chemical reaction networks that constitute metabolism.
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Affiliation(s)
- Eric Libby
- Integrated Science Lab, Umeå University, Umeå, Sweden
- Department of Mathematics and Mathematical Statistics, Umeå University, Umeå, Sweden
- Santa Fe Institute, Santa Fe, New Mexico, United States of America
- * E-mail:
| | - Laurent Hébert-Dufresne
- Santa Fe Institute, Santa Fe, New Mexico, United States of America
- Department of Computer Science, University of Vermont, Burlington, Vermont, United States of America
| | - Sayed-Rzgar Hosseini
- Department of Evolutionary Biology and Environmental Studies, University of Zurich, Zurich, Switzerland
| | - Andreas Wagner
- Santa Fe Institute, Santa Fe, New Mexico, United States of America
- Department of Evolutionary Biology and Environmental Studies, University of Zurich, Zurich, Switzerland
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38
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Kumar M, Ji B, Zengler K, Nielsen J. Modelling approaches for studying the microbiome. Nat Microbiol 2019; 4:1253-1267. [PMID: 31337891 DOI: 10.1038/s41564-019-0491-9] [Citation(s) in RCA: 78] [Impact Index Per Article: 15.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/21/2017] [Accepted: 05/21/2019] [Indexed: 02/08/2023]
Abstract
Advances in metagenome sequencing of the human microbiome have provided a plethora of new insights and revealed a close association of this complex ecosystem with a range of human diseases. However, there is little knowledge about how the different members of the microbial community interact with each other and with the host, and we lack basic mechanistic understanding of these interactions related to health and disease. Mathematical modelling has been demonstrated to be highly advantageous for gaining insights into the dynamics and interactions of complex systems and in recent years, several modelling approaches have been proposed to enhance our understanding of the microbiome. Here, we review the latest developments and current approaches, and highlight how different modelling strategies have been applied to unravel the highly dynamic nature of the human microbiome. Furthermore, we discuss present limitations of different modelling strategies and provide a perspective of how modelling can advance understanding and offer new treatment routes to impact human health.
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Affiliation(s)
- Manish Kumar
- Department of Biology and Biological Engineering, Chalmers University of Technology, Gothenburg, Sweden.,Department of Pediatrics, University of California, San Diego, CA, USA
| | - Boyang Ji
- Department of Biology and Biological Engineering, Chalmers University of Technology, Gothenburg, Sweden
| | - Karsten Zengler
- Department of Pediatrics, University of California, San Diego, CA, USA.,Department of Bioengineering, University of California, San Diego, CA, USA.,Center for Microbiome Innovation, University of California, San Diego, CA, USA
| | - Jens Nielsen
- Department of Biology and Biological Engineering, Chalmers University of Technology, Gothenburg, Sweden. .,Novo Nordisk Foundation Center for Biosustainability, Technical University of Denmark, Lyngby, Denmark.
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Yin C, Shen Y, Yuan R, Zhu N, Yuan H, Lou Z. Sludge-based biochar-assisted thermophilic anaerobic digestion of waste-activated sludge in microbial electrolysis cell for methane production. BIORESOURCE TECHNOLOGY 2019; 284:315-324. [PMID: 30952059 DOI: 10.1016/j.biortech.2019.03.146] [Citation(s) in RCA: 46] [Impact Index Per Article: 9.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/05/2019] [Revised: 03/28/2019] [Accepted: 03/29/2019] [Indexed: 06/09/2023]
Abstract
The development of microbial electrolysis cells (MECs) for methane production from waste activated sludge (WAS) is arrested due to the limited methane yield and fragile system stability. This study proposed a strategy to accelerate and stabilize MEC via 1.0 g/g DM (dry matter) sludge-based biochar (BC). The results showed that BC clearly accelerated methane production by 24.7% and enhanced VS removal efficiency by 17.9%, compared to control group. Variations of SCOD, proteins, carbohydrates and VFAs indicated biochar promoted hydrolysis and acidogenesis process. Cyclic voltammetry (CV) curves and coulombic efficiency (CE) suggested organic matters degradation and electron generation on anode were enhanced with supplement of biochar. Microbial community analyses revealed that biochar addition could both promote DIET through substituting exoelectrogen (e.g., Thermincola) on anode and enrich hydrogenotrophic methanogens (e.g., Methanothermobacter) on cathode, which is beneficial to development of MEC as to methane recovery from organic matters.
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Affiliation(s)
- Changkai Yin
- School of Environmental Science and Engineering, Shanghai Jiao Tong University, Shanghai 200240, PR China
| | - Yanwen Shen
- School of Environmental Science and Engineering, Shanghai Jiao Tong University, Shanghai 200240, PR China
| | - Rongxue Yuan
- School of Environmental Science and Engineering, Shanghai Jiao Tong University, Shanghai 200240, PR China
| | - Nanwen Zhu
- School of Environmental Science and Engineering, Shanghai Jiao Tong University, Shanghai 200240, PR China; Shanghai Institute of Pollution Control and Ecological Security, Shanghai 200092, PR China.
| | - Haiping Yuan
- School of Environmental Science and Engineering, Shanghai Jiao Tong University, Shanghai 200240, PR China
| | - Ziyang Lou
- School of Environmental Science and Engineering, Shanghai Jiao Tong University, Shanghai 200240, PR China
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40
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Metabolic modelling of mixed culture anaerobic microbial processes. Curr Opin Biotechnol 2019; 57:137-144. [DOI: 10.1016/j.copbio.2019.03.014] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/29/2018] [Revised: 03/14/2019] [Accepted: 03/17/2019] [Indexed: 01/22/2023]
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41
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Xu S, Zhang Y, Luo L, Liu H. Startup performance of microbial electrolysis cell assisted anaerobic digester (MEC-AD) with pre-acclimated activated carbon. ACTA ACUST UNITED AC 2019; 5:91-98. [PMID: 31193294 PMCID: PMC6524652 DOI: 10.1016/j.biteb.2018.12.007] [Citation(s) in RCA: 18] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/15/2018] [Revised: 12/11/2018] [Accepted: 12/12/2018] [Indexed: 12/02/2022]
Abstract
The feasibility of using pre-acclimated activated carbon to start up microbial electrolysis cell assisted anaerobic digester (MEC-AD) has been testified in this study. Two identical lab-scale digesters were separately packed with granular activated carbon (GAC) and powered activated carbon (PAC), which were initially acclimated as anaerobic digester and then transferred to MEC-AD. When a voltage of 0.5 V was applied, increased methane generation and substrate removal rates were observed. Hydrogenotrophic methanogens predominated in both digesters before and after transition, indicating that the pre-cultured microbial community on carbon materials could provide necessary microbiome favorable for starting up MECs. Although a low abundance of Geobacter was detected in inoculum, a rapid propagation could be realized when reactors were subjected to the electro-stimulation. The abundance of Methanosarcina closely attached to PAC was four times than that of GAC, which might be partially contributed to the improved resilience of anaerobic digester subjected to electro-stimulation. Pre-acclimated PAC/GAC are favorable for starting up MEC-AD. Methane yield was increased by ~30% when transferring AD to MEC-AD. Abundance of electroactive bacteria on pre-enriched PAC was higher than GAC. The rapid propagation of Geobacter was found in MEC-AD.
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Affiliation(s)
- Suyun Xu
- School of Environment and Architecture, University of Shanghai for Science and Technology, Shanghai 200093, China
| | - Yuchen Zhang
- School of Environment and Architecture, University of Shanghai for Science and Technology, Shanghai 200093, China
| | - Liwen Luo
- School of Environment and Architecture, University of Shanghai for Science and Technology, Shanghai 200093, China
| | - Hongbo Liu
- School of Environment and Architecture, University of Shanghai for Science and Technology, Shanghai 200093, China
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42
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Vuillemin A, Horn F, Friese A, Winkel M, Alawi M, Wagner D, Henny C, Orsi WD, Crowe SA, Kallmeyer J. Metabolic potential of microbial communities from ferruginous sediments. Environ Microbiol 2018; 20:4297-4313. [PMID: 29968357 DOI: 10.1111/1462-2920.14343] [Citation(s) in RCA: 21] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/27/2018] [Revised: 05/22/2018] [Accepted: 06/25/2018] [Indexed: 01/22/2023]
Abstract
Ferruginous (Fe-rich, SO4 -poor) conditions are generally restricted to freshwater sediments on Earth today, but were likely widespread during the Archean and Proterozoic Eons. Lake Towuti, Indonesia, is a large ferruginous lake that likely hosts geochemical processes analogous to those that operated in the ferruginous Archean ocean. The metabolic potential of microbial communities and related biogeochemical cycling under such conditions remain largely unknown. We combined geochemical measurements (pore water chemistry, sulfate reduction rates) with metagenomics to link metabolic potential with geochemical processes in the upper 50 cm of sediment. Microbial diversity and quantities of genes for dissimilatory sulfate reduction (dsrAB) and methanogenesis (mcrA) decrease with increasing depth, as do rates of potential sulfate reduction. The presence of taxa affiliated with known iron- and sulfate-reducers implies potential use of ferric iron and sulfate as electron acceptors. Pore-water concentrations of acetate imply active production through fermentation. Fermentation likely provides substrates for respiration with iron and sulfate as electron donors and for methanogens that were detected throughout the core. The presence of ANME-1 16S and mcrA genes suggests potential for anaerobic methane oxidation. Overall our data suggest that microbial community metabolism in anoxic ferruginous sediments support coupled Fe, S and C biogeochemical cycling.
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Affiliation(s)
- Aurèle Vuillemin
- GFZ German Research Centre for Geosciences, Helmholtz Centre Potsdam, Section 5.3: Geomicrobiology, Potsdam, Germany.,Department of Earth & Environmental Sciences, Paleontology & Geobiology, Ludwig-Maximilians-Universität München, Munich, Germany
| | - Fabian Horn
- GFZ German Research Centre for Geosciences, Helmholtz Centre Potsdam, Section 5.3: Geomicrobiology, Potsdam, Germany
| | - André Friese
- GFZ German Research Centre for Geosciences, Helmholtz Centre Potsdam, Section 5.3: Geomicrobiology, Potsdam, Germany
| | - Matthias Winkel
- GFZ German Research Centre for Geosciences, Helmholtz Centre Potsdam, Section 5.3: Geomicrobiology, Potsdam, Germany
| | - Mashal Alawi
- GFZ German Research Centre for Geosciences, Helmholtz Centre Potsdam, Section 5.3: Geomicrobiology, Potsdam, Germany
| | - Dirk Wagner
- GFZ German Research Centre for Geosciences, Helmholtz Centre Potsdam, Section 5.3: Geomicrobiology, Potsdam, Germany.,University of Potsdam, Faculty of Mathematics and Natural Sciences, Institute of Earth and Environmental Sciences, Potsdam, Germany
| | - Cynthia Henny
- Research Center for Limnology (LIPI), Indonesian Institute of Sciences, Division of Inland Waterways Dynamics, Cibinong-Bogor, Indonesia
| | - William D Orsi
- Department of Earth & Environmental Sciences, Paleontology & Geobiology, Ludwig-Maximilians-Universität München, Munich, Germany.,Geobio-CenterLMU, Ludwig-Maximilians-Universität München, Munich, Germany
| | - Sean A Crowe
- Department of Microbiology and Immunology, University of British Columbia, Vancouver, Canada.,Department of Earth, Ocean and Atmospheric Sciences, University of British Columbia, Vancouver, Canada
| | - Jens Kallmeyer
- GFZ German Research Centre for Geosciences, Helmholtz Centre Potsdam, Section 5.3: Geomicrobiology, Potsdam, Germany
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43
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Xu X, Zarecki R, Medina S, Ofaim S, Liu X, Chen C, Hu S, Brom D, Gat D, Porob S, Eizenberg H, Ronen Z, Jiang J, Freilich S. Modeling microbial communities from atrazine contaminated soils promotes the development of biostimulation solutions. ISME JOURNAL 2018; 13:494-508. [PMID: 30291327 DOI: 10.1038/s41396-018-0288-5] [Citation(s) in RCA: 72] [Impact Index Per Article: 12.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/24/2018] [Revised: 09/10/2018] [Accepted: 09/14/2018] [Indexed: 12/26/2022]
Abstract
Microbial communities play a vital role in biogeochemical cycles, allowing the biodegradation of a wide range of pollutants. The composition of the community and the interactions between its members affect degradation rate and determine the identity of the final products. Here, we demonstrate the application of sequencing technologies and metabolic modeling approaches towards enhancing biodegradation of atrazine-a herbicide causing environmental pollution. Treatment of agriculture soil with atrazine is shown to induce significant changes in community structure and functional performances. Genome-scale metabolic models were constructed for Arthrobacter, the atrazine degrader, and four other non-atrazine degrading species whose relative abundance in soil was changed following exposure to the herbicide. By modeling community function we show that consortia including the direct degrader and non-degrader differentially abundant species perform better than Arthrobacter alone. Simulations predict that growth/degradation enhancement is derived by metabolic exchanges between community members. Based on simulations we designed endogenous consortia optimized for enhanced degradation whose performances were validated in vitro and biostimulation strategies that were tested in pot experiments. Overall, our analysis demonstrates that understanding community function in its wider context, beyond the single direct degrader perspective, promotes the design of biostimulation strategies.
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Affiliation(s)
- Xihui Xu
- Department of Microbiology, Key Lab of Microbiology for Agricultural Environment, Ministry of Agriculture, College of Life Sciences, Nanjing Agricultural University, Nanjing, 210095, China.,Newe Ya'ar Research Center, Agricultural Research Organization, P.O. Box 1021, Ramat Yishay, 30095, Israel
| | - Raphy Zarecki
- Newe Ya'ar Research Center, Agricultural Research Organization, P.O. Box 1021, Ramat Yishay, 30095, Israel
| | - Shlomit Medina
- Newe Ya'ar Research Center, Agricultural Research Organization, P.O. Box 1021, Ramat Yishay, 30095, Israel
| | - Shany Ofaim
- Newe Ya'ar Research Center, Agricultural Research Organization, P.O. Box 1021, Ramat Yishay, 30095, Israel.,Faculty of Biotechnology and Food Engineering, Technion-Israel Institute of Technology, Haifa, Israel
| | - Xiaowei Liu
- Department of Microbiology, Key Lab of Microbiology for Agricultural Environment, Ministry of Agriculture, College of Life Sciences, Nanjing Agricultural University, Nanjing, 210095, China
| | - Chen Chen
- Department of Microbiology, Key Lab of Microbiology for Agricultural Environment, Ministry of Agriculture, College of Life Sciences, Nanjing Agricultural University, Nanjing, 210095, China
| | - Shunli Hu
- Department of Microbiology, Key Lab of Microbiology for Agricultural Environment, Ministry of Agriculture, College of Life Sciences, Nanjing Agricultural University, Nanjing, 210095, China
| | - Dan Brom
- Newe Ya'ar Research Center, Agricultural Research Organization, P.O. Box 1021, Ramat Yishay, 30095, Israel
| | - Daniella Gat
- Department of Environmental Hydrology and Microbiology, The Zuckerberg Institute for Water Research, Ben-Gurion University of the Negev, Sede-Boqer Campus, Sede-Boqer, 8499000, Israel
| | - Seema Porob
- Department of Environmental Hydrology and Microbiology, The Zuckerberg Institute for Water Research, Ben-Gurion University of the Negev, Sede-Boqer Campus, Sede-Boqer, 8499000, Israel
| | - Hanan Eizenberg
- Newe Ya'ar Research Center, Agricultural Research Organization, P.O. Box 1021, Ramat Yishay, 30095, Israel
| | - Zeev Ronen
- Department of Environmental Hydrology and Microbiology, The Zuckerberg Institute for Water Research, Ben-Gurion University of the Negev, Sede-Boqer Campus, Sede-Boqer, 8499000, Israel
| | - Jiandong Jiang
- Department of Microbiology, Key Lab of Microbiology for Agricultural Environment, Ministry of Agriculture, College of Life Sciences, Nanjing Agricultural University, Nanjing, 210095, China.
| | - Shiri Freilich
- Newe Ya'ar Research Center, Agricultural Research Organization, P.O. Box 1021, Ramat Yishay, 30095, Israel.
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Martins G, Salvador AF, Pereira L, Alves MM. Methane Production and Conductive Materials: A Critical Review. ENVIRONMENTAL SCIENCE & TECHNOLOGY 2018; 52:10241-10253. [PMID: 30118213 DOI: 10.1021/acs.est.8b01913] [Citation(s) in RCA: 163] [Impact Index Per Article: 27.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/08/2023]
Abstract
Conductive materials (CM) have been extensively reported to enhance methane production in anaerobic digestion processes. The occurrence of direct interspecies electron transfer (DIET) in microbial communities, as an alternative or complementary to indirect electron transfer (via hydrogen or formate), is the main explanation given to justify the improvement of methane production. Not disregarding that DIET can be promoted in the presence of certain CM, it surely does not explain all the reported observations. In fact, in methanogenic environments DIET was only unequivocally demonstrated in cocultures of Geobacter metallireducens with Methanosaeta harundinacea or Methanosarcina barkeri and frequently Geobacter sp. are not detected in improved methane production driven systems. Furthermore, conductive carbon nanotubes were shown to accelerate the activity of methanogens growing in pure cultures, where DIET is not expected to occur, and hydrogenotrophic activity is ubiquitous in full-scale anaerobic digesters treating for example brewery wastewaters, indicating that interspecies hydrogen transfer is an important electron transfer mechanism in those systems. This paper presents an overview of the effect of several iron-based and carbon-based CM in bioengineered systems, focusing on the improvement in methane production and in microbial communities' changes. Control assays, as fundamental elements to support major conclusions in reported experiments, are critically revised and discussed.
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Affiliation(s)
- Gilberto Martins
- Centre of Biological Engineering , University of Minho , Campus de Gualtar , 4710-057 Braga , Portugal
| | - Andreia F Salvador
- Centre of Biological Engineering , University of Minho , Campus de Gualtar , 4710-057 Braga , Portugal
| | - Luciana Pereira
- Centre of Biological Engineering , University of Minho , Campus de Gualtar , 4710-057 Braga , Portugal
| | - M Madalena Alves
- Centre of Biological Engineering , University of Minho , Campus de Gualtar , 4710-057 Braga , Portugal
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Ambuchi JJ, Zhang Z, Dong Y, Huang L, Feng Y. Hematite and multi-walled carbon nanotubes stimulate a faster syntrophic pathway during methanogenic beet sugar industrial wastewater degradation. Appl Microbiol Biotechnol 2018; 102:7147-7158. [DOI: 10.1007/s00253-018-9100-8] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/22/2017] [Revised: 04/19/2018] [Accepted: 05/07/2018] [Indexed: 11/24/2022]
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Katuri KP, Kalathil S, Ragab A, Bian B, Alqahtani MF, Pant D, Saikaly PE. Dual-Function Electrocatalytic and Macroporous Hollow-Fiber Cathode for Converting Waste Streams to Valuable Resources Using Microbial Electrochemical Systems. ADVANCED MATERIALS (DEERFIELD BEACH, FLA.) 2018; 30:e1707072. [PMID: 29707854 DOI: 10.1002/adma.201707072] [Citation(s) in RCA: 43] [Impact Index Per Article: 7.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/03/2017] [Indexed: 06/08/2023]
Abstract
Dual-function electrocatalytic and macroporous hollow-fiber cathodes are recently proposed as promising advanced material for maximizing the conversion of waste streams such as wastewater and waste CO2 to valuable resources (e.g., clean freshwater, energy, value-added chemicals) in microbial electrochemical systems. The first part of this progress report reviews recent developments in this type of cathode architecture for the simultaneous recovery of clean freshwater and energy from wastewater. Critical insights are provided on suitable materials for fabricating these cathodes, as well as addressing some challenges in the fabrication process with proposed strategies to overcome them. The second and complementary part of the progress report highlights how the unique features of this cathode architecture can solve one of the intrinsic bottlenecks (gas-liquid mass transfer limitation) in the application of microbial electrochemical systems for CO2 reduction to value-added products. Strategies to further improve the availability of CO2 to microbial catalysts on the cathode are proposed. The importance of understanding microbe-cathode interactions, as well as electron transfer mechanisms at the cathode-cell and cell-cell interface to better design dual-function macroporous hollow-fiber cathodes, is critically discussed with insights on how the choice of material is important in facilitating direct electron transfer versus mediated electron transfer.
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Affiliation(s)
- Krishna P Katuri
- Biological and Environmental Sciences and Engineering (BESE) Division, Water Desalination and Reuse Center (WDRC), King Abdullah University of Science and Technology, Thuwal, 23955-6900, Saudi Arabia
| | - Shafeer Kalathil
- Biological and Environmental Sciences and Engineering (BESE) Division, Water Desalination and Reuse Center (WDRC), King Abdullah University of Science and Technology, Thuwal, 23955-6900, Saudi Arabia
| | - Ala'a Ragab
- Biological and Environmental Sciences and Engineering (BESE) Division, Water Desalination and Reuse Center (WDRC), King Abdullah University of Science and Technology, Thuwal, 23955-6900, Saudi Arabia
| | - Bin Bian
- Biological and Environmental Sciences and Engineering (BESE) Division, Water Desalination and Reuse Center (WDRC), King Abdullah University of Science and Technology, Thuwal, 23955-6900, Saudi Arabia
| | - Manal F Alqahtani
- Biological and Environmental Sciences and Engineering (BESE) Division, Water Desalination and Reuse Center (WDRC), King Abdullah University of Science and Technology, Thuwal, 23955-6900, Saudi Arabia
| | - Deepak Pant
- Separation and Conversion Technology, Flemish Institute for Technological Research (VITO), Boeretang 200, Mol, 2400, Belgium
| | - Pascal E Saikaly
- Biological and Environmental Sciences and Engineering (BESE) Division, Water Desalination and Reuse Center (WDRC), King Abdullah University of Science and Technology, Thuwal, 23955-6900, Saudi Arabia
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Wang R, Yan M, Li H, Zhang L, Peng B, Sun J, Liu D, Liu S. FeS 2 Nanoparticles Decorated Graphene as Microbial-Fuel-Cell Anode Achieving High Power Density. ADVANCED MATERIALS (DEERFIELD BEACH, FLA.) 2018; 30:e1800618. [PMID: 29665169 DOI: 10.1002/adma.201800618] [Citation(s) in RCA: 56] [Impact Index Per Article: 9.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/28/2018] [Revised: 03/01/2018] [Indexed: 06/08/2023]
Abstract
Microbial fuel cells (MFCs) have received great attention worldwide due to their potential in recovering electrical energy from waste and inexhaustible biomass. Unfortunately, the difficulty of achieving the high power, especially in real samples, remains a bottleneck for their practical applications. Herein, FeS2 nanoparticles decorated graphene is fabricated via a simple hydrothermal reaction. The FeS2 nanoparticles decorated graphene anode not only benefits bacterial adhesion and enrichment of electrochemically active Geobacter species on the electrode surface but also promotes efficient extracellular electron transfer, thus giving rise to a fast start-up time of 2 d, an unprecedented power density of 3220 mW m-2 and a remarkable current density of 3.06 A m-2 in the acetate-feeding and mixed bacteria-based MFCs. Most importantly, the FeS2 nanoparticles decorated graphene anode successfully achieves a power density of 310 mW m-2 with simultaneous removal of 1319 ± 28 mg L-1 chemical oxygen demand in effluents from a beer factory wastewater. The characteristics of improved power generation and enhanced pollutant removal efficiency opens the door toward development of high-performance MFCs via rational anode design for practical application.
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Affiliation(s)
- Ruiwen Wang
- School of Life Science and Technology, State Key Laboratory of Urban Water Resource and Environment, Harbin Institute of Technology, Harbin, 150080, China
| | - Mei Yan
- School of Life Science and Technology, State Key Laboratory of Urban Water Resource and Environment, Harbin Institute of Technology, Harbin, 150080, China
- Micro- and Nanotechnology Research Center, Harbin Institute of Technology, Harbin, 150080, China
| | - Huidong Li
- School of Life Science and Technology, State Key Laboratory of Urban Water Resource and Environment, Harbin Institute of Technology, Harbin, 150080, China
| | - Lu Zhang
- School of Life Science and Technology, State Key Laboratory of Urban Water Resource and Environment, Harbin Institute of Technology, Harbin, 150080, China
| | - Benqi Peng
- School of Life Science and Technology, State Key Laboratory of Urban Water Resource and Environment, Harbin Institute of Technology, Harbin, 150080, China
| | - Jinzhi Sun
- School of Life Science and Technology, State Key Laboratory of Urban Water Resource and Environment, Harbin Institute of Technology, Harbin, 150080, China
| | - Da Liu
- School of Life Science and Technology, State Key Laboratory of Urban Water Resource and Environment, Harbin Institute of Technology, Harbin, 150080, China
| | - Shaoqin Liu
- School of Life Science and Technology, State Key Laboratory of Urban Water Resource and Environment, Harbin Institute of Technology, Harbin, 150080, China
- Micro- and Nanotechnology Research Center, Harbin Institute of Technology, Harbin, 150080, China
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Semenec L, Laloo AE, Schulz BL, Vergara IA, Bond PL, Franks AE. Deciphering the electric code of Geobacter sulfurreducens in cocultures with Pseudomonas aeruginosa via SWATH-MS proteomics. Bioelectrochemistry 2018; 119:150-160. [DOI: 10.1016/j.bioelechem.2017.09.013] [Citation(s) in RCA: 19] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/08/2017] [Revised: 09/27/2017] [Accepted: 09/28/2017] [Indexed: 11/28/2022]
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Computational Approaches on Stoichiometric and Kinetic Modeling for Efficient Strain Design. Methods Mol Biol 2018; 1671:63-82. [PMID: 29170953 DOI: 10.1007/978-1-4939-7295-1_5] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]
Abstract
Engineering biological systems that are capable of overproducing products of interest is the ultimate goal of any biotechnology application. To this end, stoichiometric (or steady state) and kinetic models are increasingly becoming available for a variety of organisms including prokaryotes, eukaryotes, and microbial communities. This ever-accelerating pace of such model reconstructions has also spurred the development of optimization-based strain design techniques. This chapter highlights a number of such frameworks developed in recent years in order to generate testable hypotheses (in terms of genetic interventions), thus addressing the challenges in metabolic engineering. In particular, three major methods are covered in detail including two methods for designing strains (i.e., one stoichiometric model-based and the other by integrating kinetic information into a stoichiometric model) and one method for analyzing microbial communities.
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