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For: Cunningham JP, Yu BM. Dimensionality reduction for large-scale neural recordings. Nat Neurosci 2014;17:1500-9. [PMID: 25151264 PMCID: PMC4433019 DOI: 10.1038/nn.3776] [Citation(s) in RCA: 658] [Impact Index Per Article: 59.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/26/2014] [Accepted: 06/27/2014] [Indexed: 12/11/2022]
Number Cited by Other Article(s)
1
Karpowicz BM, Ali YH, Wimalasena LN, Sedler AR, Keshtkaran MR, Bodkin K, Ma X, Rubin DB, Williams ZM, Cash SS, Hochberg LR, Miller LE, Pandarinath C. Stabilizing brain-computer interfaces through alignment of latent dynamics. Nat Commun 2025;16:4662. [PMID: 40389429 PMCID: PMC12089531 DOI: 10.1038/s41467-025-59652-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/19/2025] [Accepted: 04/24/2025] [Indexed: 05/21/2025]  Open
2
Ye Z, Li H, Tian L, Zhou C. The effects of the post-delay epochs on working memory error reduction. PLoS Comput Biol 2025;21:e1013083. [PMID: 40359421 DOI: 10.1371/journal.pcbi.1013083] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/24/2024] [Accepted: 04/22/2025] [Indexed: 05/15/2025]  Open
3
Milinkovic B, Barnett L, Carter O, Seth AK, Andrillon T. Capturing the emergent dynamical structure in biophysical neural models. PLoS Comput Biol 2025;21:e1012572. [PMID: 40354301 PMCID: PMC12068601 DOI: 10.1371/journal.pcbi.1012572] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/18/2024] [Accepted: 03/31/2025] [Indexed: 05/14/2025]  Open
4
Kulkarni S, Bassett DS. Toward Principles of Brain Network Organization and Function. Annu Rev Biophys 2025;54:353-378. [PMID: 39952667 DOI: 10.1146/annurev-biophys-030722-110624] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/17/2025]
5
Cathignol A, Kusch L, Angiolelli M, Lopez E, Polverino A, Romano A, Sorrentino G, Jirsa V, Rabuffo G, Sorrentino P. Magnetoencephalography Dimensionality Reduction Informed by Dynamic Brain States. Eur J Neurosci 2025;61:e70128. [PMID: 40353396 PMCID: PMC12067517 DOI: 10.1111/ejn.70128] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/20/2024] [Revised: 04/01/2025] [Accepted: 04/21/2025] [Indexed: 05/14/2025]
6
Rowchan K, Gale DJ, Nick Q, Gallivan JP, Wammes JD. Visual Statistical Learning Alters Low-Dimensional Cortical Architecture. J Neurosci 2025;45:e1932242025. [PMID: 40050116 PMCID: PMC12019107 DOI: 10.1523/jneurosci.1932-24.2025] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/11/2024] [Revised: 12/02/2024] [Accepted: 02/19/2025] [Indexed: 04/25/2025]  Open
7
Dotov D, Gu J, Hotor P, Spyra J. Analysis of High-Dimensional Coordination in Human Movement Using Variance Spectrum Scaling and Intrinsic Dimensionality. ENTROPY (BASEL, SWITZERLAND) 2025;27:447. [PMID: 40282682 PMCID: PMC12027049 DOI: 10.3390/e27040447] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/06/2025] [Revised: 03/22/2025] [Accepted: 04/06/2025] [Indexed: 04/29/2025]
8
Beau M, Herzfeld DJ, Naveros F, Hemelt ME, D'Agostino F, Oostland M, Sánchez-López A, Chung YY, Maibach M, Kyranakis S, Stabb HN, Martínez Lopera MG, Lajko A, Zedler M, Ohmae S, Hall NJ, Clark BA, Cohen D, Lisberger SG, Kostadinov D, Hull C, Häusser M, Medina JF. A deep learning strategy to identify cell types across species from high-density extracellular recordings. Cell 2025;188:2218-2234.e22. [PMID: 40023155 DOI: 10.1016/j.cell.2025.01.041] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/16/2024] [Revised: 11/20/2024] [Accepted: 01/28/2025] [Indexed: 03/04/2025]
9
Runfola C, Petkoski S, Sheheitli H, Bernard C, McIntosh AR, Jirsa V. A mechanism for the emergence of low-dimensional structures in brain dynamics. NPJ Syst Biol Appl 2025;11:32. [PMID: 40210621 PMCID: PMC11985988 DOI: 10.1038/s41540-025-00499-w] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/28/2024] [Accepted: 02/12/2025] [Indexed: 04/12/2025]  Open
10
Rajeswaran P, Payeur A, Lajoie G, Orsborn AL. Assistive sensory-motor perturbations influence learned neural representations. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2025:2024.03.20.585972. [PMID: 38562772 PMCID: PMC10983972 DOI: 10.1101/2024.03.20.585972] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 04/04/2024]
11
Zhao XN, Zhang SH, Tang SM, Yu C. Surround modulation is predominantly orientation-unspecific in macaque V1. Prog Neurobiol 2025;247:102745. [PMID: 40024278 DOI: 10.1016/j.pneurobio.2025.102745] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/18/2024] [Revised: 02/21/2025] [Accepted: 02/27/2025] [Indexed: 03/04/2025]
12
Dernoncourt F, Avrillon S, Logtens T, Cattagni T, Farina D, Hug F. Flexible control of motor units: is the multidimensionality of motor unit manifolds a sufficient condition? J Physiol 2025;603:2349-2368. [PMID: 39964831 PMCID: PMC12013786 DOI: 10.1113/jp287857] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/11/2024] [Accepted: 01/27/2025] [Indexed: 02/20/2025]  Open
13
Legenkaia M, Bourdieu L, Monasson R. Uncertainties in signal recovery from heterogeneous and convoluted time series with principal component analysis. Phys Rev E 2025;111:044314. [PMID: 40411023 DOI: 10.1103/physreve.111.044314] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/12/2024] [Accepted: 03/03/2025] [Indexed: 05/26/2025]
14
Chou CN, Kim R, Arend LA, Yang YY, Mensh BD, Shim WM, Perich MG, Chung S. Geometry Linked to Untangling Efficiency Reveals Structure and Computation in Neural Populations. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2025:2024.02.26.582157. [PMID: 40236228 PMCID: PMC11996410 DOI: 10.1101/2024.02.26.582157] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Subscribe] [Scholar Register] [Indexed: 04/17/2025]
15
Tor A, Clarke SE, Bray IE, Nuyujukian P. Material Damage to Multielectrode Arrays after Electrolytic Lesioning is in the Noise. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2025:2025.03.26.645429. [PMID: 40196469 PMCID: PMC11974832 DOI: 10.1101/2025.03.26.645429] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 04/09/2025]
16
Ballem R, Andrés-Camazón P, Jensen KM, Bajracharya P, Díaz-Caneja CM, Bustillo JR, Turner JA, Fu Z, Chen J, Calhoun VD, Iraji A. Mapping the Psychosis Spectrum - Imaging Neurosubtypes from Multi-Scale Functional Network Connectivity. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2025:2025.02.11.637551. [PMID: 40196606 PMCID: PMC11974735 DOI: 10.1101/2025.02.11.637551] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Subscribe] [Scholar Register] [Indexed: 04/09/2025]
17
Blanco Malerba S, Pieropan M, Burak Y, Azeredo da Silveira R. Random compressed coding with neurons. Cell Rep 2025;44:115412. [PMID: 40111998 DOI: 10.1016/j.celrep.2025.115412] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/31/2021] [Revised: 11/20/2023] [Accepted: 02/18/2025] [Indexed: 03/22/2025]  Open
18
Coley AA, Batra K, Delahanty JM, Keyes LR, Pamintuan R, Ramot A, Hagemann J, Lee CR, Liu V, Adivikolanu H, Cressy J, Jia C, Massa F, LeDuke D, Gabir M, Durubeh B, Linderhof L, Patel R, Wichmann R, Li H, Fischer KB, Pereira T, Tye KM. Predicting Future Development of Stress-Induced Anhedonia From Cortical Dynamics and Facial Expression. RESEARCH SQUARE 2025:rs.3.rs-5537951. [PMID: 40166035 PMCID: PMC11957211 DOI: 10.21203/rs.3.rs-5537951/v1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 04/02/2025]
19
Shymkiv Y, Hamm JP, Escola S, Yuste R. Slow cortical dynamics generate context processing and novelty detection. Neuron 2025;113:847-857.e8. [PMID: 39933524 PMCID: PMC11925667 DOI: 10.1016/j.neuron.2025.01.011] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/25/2024] [Revised: 11/08/2024] [Accepted: 01/15/2025] [Indexed: 02/13/2025]
20
Zhu T, Areshenkoff CN, De Brouwer AJ, Nashed JY, Flanagan JR, Gallivan JP. Contractions in human cerebellar-cortical manifold structure underlie motor reinforcement learning. J Neurosci 2025;45:e2158242025. [PMID: 40101964 PMCID: PMC12044045 DOI: 10.1523/jneurosci.2158-24.2025] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/12/2024] [Revised: 02/12/2025] [Accepted: 03/06/2025] [Indexed: 03/20/2025]  Open
21
Alcolea PI, Ma X, Bodkin K, Miller LE, Danziger ZC. Less is more: selection from a small set of options improves BCI velocity control. J Neural Eng 2025;22:10.1088/1741-2552/adbcd9. [PMID: 40043320 PMCID: PMC12051477 DOI: 10.1088/1741-2552/adbcd9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/24/2024] [Accepted: 03/05/2025] [Indexed: 03/12/2025]
22
Omidi S, Berdichevsky Y. Pathway-like Activation of 3D Neuronal Constructs with an Optical Interface. BIOSENSORS 2025;15:179. [PMID: 40136976 PMCID: PMC11940104 DOI: 10.3390/bios15030179] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 02/03/2025] [Revised: 03/08/2025] [Accepted: 03/10/2025] [Indexed: 03/27/2025]
23
Monsalve-Mercado MM, Miller KD. The geometry of the neural state space of decisions. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2025:2025.01.24.634806. [PMID: 39896602 PMCID: PMC11785246 DOI: 10.1101/2025.01.24.634806] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Subscribe] [Scholar Register] [Indexed: 02/04/2025]
24
Ianni GR, Vázquez Y, Rouse AG, Schieber MH, Prut Y, Freiwald WA. Facial gestures are enacted via a cortical hierarchy of dynamic and stable codes. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2025:2025.03.03.641159. [PMID: 40161717 PMCID: PMC11952350 DOI: 10.1101/2025.03.03.641159] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 04/02/2025]
25
Gabriel CJ, Gupta TA, Sánchez-Fuentes A, Zeidler Z, Wilke SA, DeNardo LA. Transformations in prefrontal ensemble activity underlying rapid threat avoidance learning. Curr Biol 2025;35:1128-1136.e4. [PMID: 39938512 PMCID: PMC11916606 DOI: 10.1016/j.cub.2025.01.010] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/05/2024] [Revised: 11/23/2024] [Accepted: 01/07/2025] [Indexed: 02/14/2025]
26
Li M, Chen S, Zhang X, Wang Y. Neural Correlation Integrated Adaptive Point Process Filtering on Population Spike Trains. IEEE Trans Neural Syst Rehabil Eng 2025;33:1014-1025. [PMID: 40031623 DOI: 10.1109/tnsre.2025.3545206] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/05/2025]
27
Kunigk NG, Schone HR, Gontier C, Hockeimer W, Tortolani AF, Hatsopoulos NG, Downey JE, Chase SM, Boninger ML, Dekleva BD, Collinger JL. Motor somatotopy impacts imagery strategy success in human intracortical brain-computer interfaces. J Neural Eng 2025;22:026004. [PMID: 39993333 DOI: 10.1088/1741-2552/adb995] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/29/2024] [Accepted: 02/24/2025] [Indexed: 02/26/2025]
28
Maran R, Müller EJ, Fulcher BD. Analyzing the brain's dynamic response to targeted stimulation using generative modeling. Netw Neurosci 2025;9:237-258. [PMID: 40161996 PMCID: PMC11949581 DOI: 10.1162/netn_a_00433] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/05/2024] [Accepted: 11/19/2024] [Indexed: 04/02/2025]  Open
29
Johnson JS, Niwa M, O'Connor KN, Malone BJ, Sutter ML. Hierarchical emergence of opponent coding in auditory belt cortex. J Neurophysiol 2025;133:944-964. [PMID: 39963949 DOI: 10.1152/jn.00519.2024] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/04/2024] [Revised: 11/20/2024] [Accepted: 02/12/2025] [Indexed: 03/11/2025]  Open
30
Langdon C, Engel TA. Latent circuit inference from heterogeneous neural responses during cognitive tasks. Nat Neurosci 2025;28:665-675. [PMID: 39930096 PMCID: PMC11893458 DOI: 10.1038/s41593-025-01869-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/12/2022] [Accepted: 12/09/2024] [Indexed: 03/12/2025]
31
Lenfesty B, Bhattacharyya S, Wong-Lin K. Uncovering Dynamical Equations of Stochastic Decision Models Using Data-Driven SINDy Algorithm. Neural Comput 2025;37:569-587. [PMID: 39787421 DOI: 10.1162/neco_a_01736] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/03/2024] [Accepted: 10/31/2024] [Indexed: 01/12/2025]
32
Barzon G, Busiello DM, Nicoletti G. Excitation-Inhibition Balance Controls Information Encoding in Neural Populations. PHYSICAL REVIEW LETTERS 2025;134:068403. [PMID: 40021162 DOI: 10.1103/physrevlett.134.068403] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/05/2024] [Revised: 10/17/2024] [Accepted: 01/27/2025] [Indexed: 03/03/2025]
33
Ignatavicius A, Matar E, Lewis SJG. Visual hallucinations in Parkinson's disease: spotlight on central cholinergic dysfunction. Brain 2025;148:376-393. [PMID: 39252645 PMCID: PMC11788216 DOI: 10.1093/brain/awae289] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/19/2024] [Revised: 07/02/2024] [Accepted: 08/30/2024] [Indexed: 09/11/2024]  Open
34
Guo H, Kuang S, Gail A. Sensorimotor environment but not task rule reconfigures population dynamics in rhesus monkey posterior parietal cortex. Nat Commun 2025;16:1116. [PMID: 39900579 PMCID: PMC11791165 DOI: 10.1038/s41467-025-56360-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/20/2024] [Accepted: 01/15/2025] [Indexed: 02/05/2025]  Open
35
Sarra GD, Jha S, Roudi Y. The role of oscillations in grid cells' toroidal topology. PLoS Comput Biol 2025;21:e1012776. [PMID: 39879234 DOI: 10.1371/journal.pcbi.1012776] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/05/2024] [Accepted: 01/07/2025] [Indexed: 01/31/2025]  Open
36
Li D, Hudetz AG. Anesthesia alters complexity of spontaneous and stimulus-related neuronal firing patterns in rat visual cortex. Neuroscience 2025;565:440-456. [PMID: 39631661 DOI: 10.1016/j.neuroscience.2024.11.076] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/27/2024] [Revised: 11/27/2024] [Accepted: 11/29/2024] [Indexed: 12/07/2024]
37
Price MS, Rastegari E, Gupta R, Vo K, Moore TI, Venkatachalam K. Intracellular Lactate Dynamics in Drosophila Glutamatergic Neurons. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2025:2024.02.26.582095. [PMID: 38464270 PMCID: PMC10925175 DOI: 10.1101/2024.02.26.582095] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 03/12/2024]
38
Yasmin F, Naskar S, Rosas-Vidal LE, Patel S. Cannabinoid Modulation of Central Amygdala Population Dynamics During Threat Investigation. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2025:2025.01.21.634174. [PMID: 39896564 PMCID: PMC11785019 DOI: 10.1101/2025.01.21.634174] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/04/2025]
39
Tausani L, Testolin A, Zorzi M. Investigating the intrinsic top-down dynamics of deep generative models. Sci Rep 2025;15:2875. [PMID: 39843473 PMCID: PMC11754800 DOI: 10.1038/s41598-024-85055-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/05/2023] [Accepted: 12/26/2024] [Indexed: 01/24/2025]  Open
40
Egas Santander D, Pokorny C, Ecker A, Lazovskis J, Santoro M, Smith JP, Hess K, Levi R, Reimann MW. Heterogeneous and higher-order cortical connectivity undergirds efficient, robust, and reliable neural codes. iScience 2025;28:111585. [PMID: 39845419 PMCID: PMC11751574 DOI: 10.1016/j.isci.2024.111585] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/19/2024] [Revised: 10/16/2024] [Accepted: 12/09/2024] [Indexed: 01/24/2025]  Open
41
Hu A, Zoltowski D, Nair A, Anderson D, Duncker L, Linderman S. Modeling Latent Neural Dynamics with Gaussian Process Switching Linear Dynamical Systems. ARXIV 2025:arXiv:2408.03330v3. [PMID: 39876935 PMCID: PMC11774443] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Subscribe] [Scholar Register] [Indexed: 01/31/2025]
42
Zhao Z, Schieber MH. Progressively shifting patterns of co-modulation among premotor cortex neurons carry dynamically similar signals during action execution and observation. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2025:2023.11.06.565833. [PMID: 37986800 PMCID: PMC10659317 DOI: 10.1101/2023.11.06.565833] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/22/2023]
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Rajalingham R, Sohn H, Jazayeri M. Dynamic tracking of objects in the macaque dorsomedial frontal cortex. Nat Commun 2025;16:346. [PMID: 39746908 PMCID: PMC11696028 DOI: 10.1038/s41467-024-54688-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/18/2024] [Accepted: 11/18/2024] [Indexed: 01/04/2025]  Open
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Wang B, Zhang Y, Li H, Dou H, Guo Y, Deng Y. Biologically inspired heterogeneous learning for accurate, efficient and low-latency neural network. Natl Sci Rev 2025;12:nwae301. [PMID: 39758128 PMCID: PMC11697980 DOI: 10.1093/nsr/nwae301] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/30/2024] [Revised: 07/24/2024] [Accepted: 08/08/2024] [Indexed: 01/07/2025]  Open
45
Stringer C, Zhong L, Syeda A, Du F, Kesa M, Pachitariu M. Rastermap: a discovery method for neural population recordings. Nat Neurosci 2025;28:201-212. [PMID: 39414974 PMCID: PMC11706777 DOI: 10.1038/s41593-024-01783-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/07/2023] [Accepted: 09/11/2024] [Indexed: 10/18/2024]
46
Kim JH, Daie K, Li N. A combinatorial neural code for long-term motor memory. Nature 2025;637:663-672. [PMID: 39537930 PMCID: PMC11735397 DOI: 10.1038/s41586-024-08193-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/13/2023] [Accepted: 10/10/2024] [Indexed: 11/16/2024]
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Gomez C, Uhrig L, Frouin V, Duchesnay E, Jarraya B, Grigis A. Deep learning models reveal the link between dynamic brain connectivity patterns and states of consciousness. Sci Rep 2024;14:31606. [PMID: 39738114 PMCID: PMC11686193 DOI: 10.1038/s41598-024-76695-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/08/2024] [Accepted: 10/16/2024] [Indexed: 01/01/2025]  Open
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Guo W, Zhang JJ, Newman JP, Wilson MA. Latent learning drives sleep-dependent plasticity in distinct CA1 subpopulations. Cell Rep 2024;43:115028. [PMID: 39612242 DOI: 10.1016/j.celrep.2024.115028] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/14/2023] [Revised: 06/26/2024] [Accepted: 11/12/2024] [Indexed: 12/01/2024]  Open
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Coley AA, Batra K, Delahanty JM, Keyes LR, Pamintuan R, Ramot A, Hagemann J, Lee CR, Liu V, Adivikolanu H, Cressy J, Jia C, Massa F, LeDuke D, Gabir M, Durubeh B, Linderhof L, Patel R, Wichmann R, Li H, Fischer KB, Pereira T, Tye KM. Predicting Future Development of Stress-Induced Anhedonia From Cortical Dynamics and Facial Expression. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2024:2024.12.18.629202. [PMID: 39764017 PMCID: PMC11702711 DOI: 10.1101/2024.12.18.629202] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Subscribe] [Scholar Register] [Indexed: 01/16/2025]
50
Geng J, Voitiuk K, Parks DF, Robbins A, Spaeth A, Sevetson JL, Hernandez S, Schweiger HE, Andrews JP, Seiler ST, Elliott MA, Chang EF, Nowakowski TJ, Currie R, Mostajo-Radji MA, Haussler D, Sharf T, Salama SR, Teodorescu M. Multiscale Cloud-Based Pipeline for Neuronal Electrophysiology Analysis and Visualization. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2024:2024.11.14.623530. [PMID: 39605518 PMCID: PMC11601321 DOI: 10.1101/2024.11.14.623530] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Subscribe] [Scholar Register] [Indexed: 11/29/2024]
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