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Find an Article PDF (5081075)   Today's Articles (1112)
For: Ragonnet-Cronin M, Boyd O, Geidelberg L, Jorgensen D, Nascimento FF, Siveroni I, Johnson RA, Baguelin M, Cucunubá ZM, Jauneikaite E, Mishra S, Watson OJ, Ferguson N, Cori A, Donnelly CA, Volz E. Genetic evidence for the association between COVID-19 epidemic severity and timing of non-pharmaceutical interventions. Nat Commun 2021;12:2188. [PMID: 33846321 PMCID: PMC8041850 DOI: 10.1038/s41467-021-22366-y] [Citation(s) in RCA: 23] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/17/2020] [Accepted: 03/10/2021] [Indexed: 01/09/2023]  Open
Number Cited by Other Article(s)
1
Översti S, Weber A, Baran V, Kieninger B, Dilthey A, Houwaart T, Walker A, Schneider-Brachert W, Kühnert D. Evolutionary and epidemic dynamics of COVID-19 in Germany exemplified by three Bayesian phylodynamic case studies. Bioinform Biol Insights 2025;19:11779322251321065. [PMID: 40078196 PMCID: PMC11898094 DOI: 10.1177/11779322251321065] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/08/2024] [Accepted: 01/29/2025] [Indexed: 03/14/2025]  Open
2
Galmiche S, Coustaury C, Charniga K, Grant R, Cauchemez S, Fontanet A. Patterns and drivers of excess mortality during the COVID-19 pandemic in 13 Western European countries. BMC GLOBAL AND PUBLIC HEALTH 2024;2:78. [PMID: 39681939 DOI: 10.1186/s44263-024-00103-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/15/2024] [Accepted: 10/09/2024] [Indexed: 12/18/2024]
3
Xie R, Adam DC, Hu S, Cowling BJ, Gascuel O, Zhukova A, Dhanasekaran V. Integrating Contact Tracing Data to Enhance Outbreak Phylodynamic Inference: A Deep Learning Approach. Mol Biol Evol 2024;41:msae232. [PMID: 39497507 PMCID: PMC11600589 DOI: 10.1093/molbev/msae232] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/07/2024] [Revised: 09/27/2024] [Accepted: 10/24/2024] [Indexed: 11/28/2024]  Open
4
Yu Q, Ascensao JA, Okada T, The COVID-19 Genomics UK (COG-UK) Consortium, Boyd O, Volz E, Hallatschek O. Lineage frequency time series reveal elevated levels of genetic drift in SARS-CoV-2 transmission in England. PLoS Pathog 2024;20:e1012090. [PMID: 38620033 PMCID: PMC11045146 DOI: 10.1371/journal.ppat.1012090] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/27/2023] [Revised: 04/25/2024] [Accepted: 03/03/2024] [Indexed: 04/17/2024]  Open
5
Zhou X, Zhang X, Santi P, Ratti C. Phase-wise evaluation and optimization of non-pharmaceutical interventions to contain the COVID-19 pandemic in the U.S. Front Public Health 2023;11:1198973. [PMID: 37601210 PMCID: PMC10434774 DOI: 10.3389/fpubh.2023.1198973] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/02/2023] [Accepted: 07/10/2023] [Indexed: 08/22/2023]  Open
6
Lamkiewicz K, Esquivel Gomez LR, Kühnert D, Marz M. Genome Structure, Life Cycle, and Taxonomy of Coronaviruses and the Evolution of SARS-CoV-2. Curr Top Microbiol Immunol 2023;439:305-339. [PMID: 36592250 DOI: 10.1007/978-3-031-15640-3_9] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/03/2023]
7
Hinch R, Panovska-Griffiths J, Probert WJM, Ferretti L, Wymant C, Di Lauro F, Baya N, Ghafari M, Abeler-Dörner L, Fraser C. Estimating SARS-CoV-2 variant fitness and the impact of interventions in England using statistical and geo-spatial agent-based models. PHILOSOPHICAL TRANSACTIONS. SERIES A, MATHEMATICAL, PHYSICAL, AND ENGINEERING SCIENCES 2022. [PMID: 35965459 DOI: 10.6084/m9.figshare.c.6067650] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Subscribe] [Scholar Register] [Indexed: 05/07/2023]
8
Hinch R, Panovska-Griffiths J, Probert WJM, Ferretti L, Wymant C, Di Lauro F, Baya N, Ghafari M, Abeler-Dörner L, The COVID-19 Genomics UK (COG-UK) Consortium, Fraser C. Estimating SARS-CoV-2 variant fitness and the impact of interventions in England using statistical and geo-spatial agent-based models. PHILOSOPHICAL TRANSACTIONS. SERIES A, MATHEMATICAL, PHYSICAL, AND ENGINEERING SCIENCES 2022;380:20210304. [PMID: 35965459 PMCID: PMC9376717 DOI: 10.1098/rsta.2021.0304] [Citation(s) in RCA: 9] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/28/2021] [Accepted: 02/22/2022] [Indexed: 05/04/2023]
9
Attwood SW, Hill SC, Aanensen DM, Connor TR, Pybus OG. Phylogenetic and phylodynamic approaches to understanding and combating the early SARS-CoV-2 pandemic. Nat Rev Genet 2022;23:547-562. [PMID: 35459859 PMCID: PMC9028907 DOI: 10.1038/s41576-022-00483-8] [Citation(s) in RCA: 82] [Impact Index Per Article: 27.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 03/23/2022] [Indexed: 01/05/2023]
10
Zhang Q, Phang CW, Zhang C. Does the internet help governments contain the COVID-19 pandemic? Multi-country evidence from online human behaviour. GOVERNMENT INFORMATION QUARTERLY 2022;39:101749. [PMID: 35991759 PMCID: PMC9374504 DOI: 10.1016/j.giq.2022.101749] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 05/06/2021] [Revised: 06/26/2022] [Accepted: 07/19/2022] [Indexed: 11/04/2022]
11
Ari E, Vásárhelyi BM, Kemenesi G, Tóth GE, Zana B, Somogyi B, Lanszki Z, Röst G, Jakab F, Papp B, Kintses B. A Single Early Introduction Governed Viral Diversity in the Second Wave of SARS-CoV-2 Epidemic in Hungary. Virus Evol 2022;8:veac069. [PMID: 35996591 PMCID: PMC9384595 DOI: 10.1093/ve/veac069] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/27/2022] [Revised: 06/28/2022] [Accepted: 07/26/2022] [Indexed: 11/30/2022]  Open
12
Wang T, Miao F, Lv S, Li L, Wei F, Hou L, Sun R, Li W, Zhang J, Zhang C, Yang G, Xiang H, Meng K, Wan Z, Wang B, Feng G, Zhao Z, Luo D, Li N, Tu C, Wang H, Xue X, Liu Y, Gao Y. Proteomic and Metabolomic Characterization of SARS-CoV-2-Infected Cynomolgus Macaque at Early Stage. Front Immunol 2022;13:954121. [PMID: 35903092 PMCID: PMC9315341 DOI: 10.3389/fimmu.2022.954121] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/27/2022] [Accepted: 06/15/2022] [Indexed: 11/26/2022]  Open
13
McBroome J, Martin J, de Bernardi Schneider A, Turakhia Y, Corbett-Detig R. Identifying SARS-CoV-2 regional introductions and transmission clusters in real time. Virus Evol 2022;8:veac048. [PMID: 35769891 PMCID: PMC9214145 DOI: 10.1093/ve/veac048] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/02/2022] [Revised: 04/04/2022] [Accepted: 06/13/2022] [Indexed: 12/31/2022]  Open
14
Cappello L, Kim J, Liu S, Palacios JA. Statistical Challenges in Tracking the Evolution of SARS-CoV-2. Stat Sci 2022;37:162-182. [PMID: 36034090 PMCID: PMC9409356 DOI: 10.1214/22-sts853] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
15
Lobinska G, Pauzner A, Traulsen A, Pilpel Y, Nowak MA. Evolution of resistance to COVID-19 vaccination with dynamic social distancing. Nat Hum Behav 2022;6:193-206. [PMID: 35210582 DOI: 10.1038/s41562-021-01281-8] [Citation(s) in RCA: 23] [Impact Index Per Article: 7.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/02/2021] [Accepted: 12/14/2021] [Indexed: 01/05/2023]
16
KING AARONA, LIN QIANYING, IONIDES EDWARDL. Markov genealogy processes. Theor Popul Biol 2022;143:77-91. [PMID: 34896438 PMCID: PMC8846264 DOI: 10.1016/j.tpb.2021.11.003] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/26/2021] [Revised: 11/19/2021] [Accepted: 11/22/2021] [Indexed: 02/03/2023]
17
Saeidpour A, Rohani P. Optimal non-pharmaceutical intervention policy for Covid-19 epidemic via neuroevolution algorithm. Evol Med Public Health 2022;10:59-70. [PMID: 35169480 PMCID: PMC8841015 DOI: 10.1093/emph/eoac002] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/17/2021] [Accepted: 01/15/2022] [Indexed: 12/15/2022]  Open
18
Nian F, Shi Y, Cao J. COVID-19 Propagation Model Based on Economic Development and Interventions. WIRELESS PERSONAL COMMUNICATIONS 2022;122:2355-2365. [PMID: 34421225 PMCID: PMC8371428 DOI: 10.1007/s11277-021-08998-9] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Accepted: 08/08/2021] [Indexed: 05/03/2023]
19
O'Brien DA, Clements CF. Early warning signal reliability varies with COVID-19 waves. Biol Lett 2021;17:20210487. [PMID: 34875183 PMCID: PMC8651412 DOI: 10.1098/rsbl.2021.0487] [Citation(s) in RCA: 14] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/10/2021] [Accepted: 11/15/2021] [Indexed: 01/07/2023]  Open
20
Liang LL, Kao CT, Ho HJ, Wu CY. COVID-19 case doubling time associated with non-pharmaceutical interventions and vaccination: A global experience. J Glob Health 2021;11:05021. [PMID: 34552726 PMCID: PMC8442574 DOI: 10.7189/jogh.11.05021] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/02/2022]  Open
21
Nixon DF, Marín-Hernández D, Hupert N. Extreme immunotherapy: emergency immunology to defeat pandemics. Mol Med 2021;27:112. [PMID: 34530723 PMCID: PMC8444162 DOI: 10.1186/s10020-021-00366-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/20/2021] [Accepted: 08/30/2021] [Indexed: 12/15/2022]  Open
22
Kepler L, Hamins-Puertolas M, Rasmussen DA. Decomposing the sources of SARS-CoV-2 fitness variation in the United States. Virus Evol 2021;7:veab073. [PMID: 34642604 PMCID: PMC8499931 DOI: 10.1093/ve/veab073] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/18/2021] [Revised: 08/13/2021] [Accepted: 08/20/2021] [Indexed: 12/14/2022]  Open
23
He N. Rapid evolution of the COVID-19 pandemic calls for a unified public health response. Biosci Trends 2021;15:196-200. [PMID: 34193749 DOI: 10.5582/bst.2021.01261] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/05/2022]
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