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For: Dove NC, Torn MS, Hart SC, Taş N. Metabolic capabilities mute positive response to direct and indirect impacts of warming throughout the soil profile. Nat Commun 2021;12:2089. [PMID: 33828081 DOI: 10.1038/s41467-021-22408-5] [Citation(s) in RCA: 21] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/11/2020] [Accepted: 03/10/2021] [Indexed: 02/01/2023]  Open
Number Cited by Other Article(s)
1
Zhong S, Li B, Chen Q, Zhang J, Cai H, An R, Liu G, Zhou S. Identifying groundwater anthropogenic disturbances and their predominant impact on microbial nitrogen cycling at a former contamination site adjacent to Baiyangdian Lake. WATER RESEARCH 2025;280:123544. [PMID: 40156973 DOI: 10.1016/j.watres.2025.123544] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/13/2024] [Revised: 03/07/2025] [Accepted: 03/22/2025] [Indexed: 04/01/2025]
2
Liu S, Ru J, Guo X, Gao Q, Deng S, Lei J, Song J, Zhai C, Wan S, Yang Y. Altered precipitation and nighttime warming reshape the vertical distribution of soil microbial communities. mSystems 2025;10:e0124824. [PMID: 40197052 PMCID: PMC12090752 DOI: 10.1128/msystems.01248-24] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/17/2024] [Accepted: 02/04/2025] [Indexed: 04/09/2025]  Open
3
Zhou J, Bilyera N, Guillaume T, Yang H, Li FM, Shi L. Microbial necromass and glycoproteins for determining soil carbon formation under arbuscular mycorrhiza symbiosis. THE SCIENCE OF THE TOTAL ENVIRONMENT 2024;955:176732. [PMID: 39395500 DOI: 10.1016/j.scitotenv.2024.176732] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/27/2024] [Revised: 09/21/2024] [Accepted: 10/02/2024] [Indexed: 10/14/2024]
4
Qi X, Liang X, Chai B, Jia T. Vertical fungal community distribution patterns along a stratified soil profile in subalpine Larix principis-rupprechtii plantations on China's Luya mountain. Fungal Biol 2024;128:2285-2294. [PMID: 39643395 DOI: 10.1016/j.funbio.2024.11.003] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/12/2023] [Revised: 11/06/2024] [Accepted: 11/07/2024] [Indexed: 12/09/2024]
5
Song J, Zhang H, Razavi B, Chang F, Yu R, Zhang X, Wang J, Zhou J, Li Y, Kuzyakov Y. Bacterial necromass as the main source of organic matter in saline soils. JOURNAL OF ENVIRONMENTAL MANAGEMENT 2024;371:123130. [PMID: 39476662 DOI: 10.1016/j.jenvman.2024.123130] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/01/2024] [Revised: 10/13/2024] [Accepted: 10/27/2024] [Indexed: 11/28/2024]
6
Li L, Xu Q, Jiang S, Jing X, Shen Q, He JS, Yang Y, Ling N. Asymmetric winter warming reduces microbial carbon use efficiency and growth more than symmetric year-round warming in alpine soils. Proc Natl Acad Sci U S A 2024;121:e2401523121. [PMID: 39401358 PMCID: PMC11513915 DOI: 10.1073/pnas.2401523121] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/23/2024] [Accepted: 08/29/2024] [Indexed: 10/30/2024]  Open
7
Pei J, Fang C, Li B, Nie M, Li J. Direct Evidence for Microbial Regulation of the Temperature Sensitivity of Soil Carbon Decomposition. GLOBAL CHANGE BIOLOGY 2024;30:e17523. [PMID: 39377428 DOI: 10.1111/gcb.17523] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/11/2024] [Revised: 08/26/2024] [Accepted: 09/07/2024] [Indexed: 10/09/2024]
8
Li Y, Xue Y, Roy Chowdhury T, Graham DE, Tringe SG, Jansson JK, Taş N. Genomic insights into redox-driven microbial processes for carbon decomposition in thawing Arctic soils and permafrost. mSphere 2024;9:e0025924. [PMID: 38860762 PMCID: PMC11288003 DOI: 10.1128/msphere.00259-24] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/18/2024] [Accepted: 05/03/2024] [Indexed: 06/12/2024]  Open
9
He L, Sun X, Li S, Zhou W, Yu J, Zhao G. Biogeographic and co-occurrence network differentiation of fungal communities in warm-temperate montane soils. THE SCIENCE OF THE TOTAL ENVIRONMENT 2024;948:174911. [PMID: 39038676 DOI: 10.1016/j.scitotenv.2024.174911] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/11/2024] [Revised: 07/16/2024] [Accepted: 07/18/2024] [Indexed: 07/24/2024]
10
Cai M, Zhang Y, Zhao G, Zhao B, Cong N, Zhu J, Zheng Z, Wu W, Duan X. Excessive climate warming exacerbates nitrogen limitation on microbial metabolism in an alpine meadow of the Tibetan Plateau: Evidence from soil ecoenzymatic stoichiometry. THE SCIENCE OF THE TOTAL ENVIRONMENT 2024;930:172731. [PMID: 38663605 DOI: 10.1016/j.scitotenv.2024.172731] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/19/2023] [Revised: 04/17/2024] [Accepted: 04/22/2024] [Indexed: 05/03/2024]
11
Zhou X, Chen X, Yang K, Guo X, Liu G, Zhuang G, Zheng G, Fortin D, Ma A. Vegetation restoration in an alpine meadow: Insights from soil microbial communities and resource limitation across soil depth. JOURNAL OF ENVIRONMENTAL MANAGEMENT 2024;360:121129. [PMID: 38749128 DOI: 10.1016/j.jenvman.2024.121129] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/30/2024] [Revised: 05/01/2024] [Accepted: 05/08/2024] [Indexed: 06/05/2024]
12
Li YM, Wang YM, Qiu GW, Yu HJ, Liu FM, Wang GL, Duan Y. Conservation tillage facilitates the accumulation of soil organic carbon fractions by affecting the microbial community in an eolian sandy soil. Front Microbiol 2024;15:1394179. [PMID: 38881670 PMCID: PMC11176501 DOI: 10.3389/fmicb.2024.1394179] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/01/2024] [Accepted: 05/13/2024] [Indexed: 06/18/2024]  Open
13
Ma L, Zhou G, Zhang J, Jia Z, Zou H, Chen L, Zhang C, Ma D, Han C, Duan Y. Long-term conservation tillage enhances microbial carbon use efficiency by altering multitrophic interactions in soil. THE SCIENCE OF THE TOTAL ENVIRONMENT 2024;915:170018. [PMID: 38224879 DOI: 10.1016/j.scitotenv.2024.170018] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/15/2023] [Revised: 12/03/2023] [Accepted: 01/06/2024] [Indexed: 01/17/2024]
14
He L, Sun X, Li S, Zhou W, Yu J, Zhao G, Chen Z, Bai X, Zhang J. Depth effects on bacterial community altitudinal patterns and assembly processes in the warm-temperate montane forests of China. THE SCIENCE OF THE TOTAL ENVIRONMENT 2024;914:169905. [PMID: 38190904 DOI: 10.1016/j.scitotenv.2024.169905] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/24/2023] [Revised: 10/25/2023] [Accepted: 01/02/2024] [Indexed: 01/10/2024]
15
Wu H, Cui H, Fu C, Li R, Qi F, Liu Z, Yang G, Xiao K, Qiao M. Unveiling the crucial role of soil microorganisms in carbon cycling: A review. THE SCIENCE OF THE TOTAL ENVIRONMENT 2024;909:168627. [PMID: 37977383 DOI: 10.1016/j.scitotenv.2023.168627] [Citation(s) in RCA: 58] [Impact Index Per Article: 58.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/25/2023] [Revised: 11/13/2023] [Accepted: 11/14/2023] [Indexed: 11/19/2023]
16
Tian J, Dungait JAJ, Hou R, Deng Y, Hartley IP, Yang Y, Kuzyakov Y, Zhang F, Cotrufo MF, Zhou J. Microbially mediated mechanisms underlie soil carbon accrual by conservation agriculture under decade-long warming. Nat Commun 2024;15:377. [PMID: 38191568 PMCID: PMC10774409 DOI: 10.1038/s41467-023-44647-4] [Citation(s) in RCA: 9] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/29/2023] [Accepted: 12/20/2023] [Indexed: 01/10/2024]  Open
17
Liu XJA, Han S, Frey SD, Melillo JM, Zhou J, DeAngelis KM. Microbial responses to long-term warming differ across soil microenvironments. ISME COMMUNICATIONS 2024;4:ycae051. [PMID: 38699060 PMCID: PMC11065356 DOI: 10.1093/ismeco/ycae051] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 12/18/2023] [Revised: 03/26/2024] [Accepted: 04/02/2024] [Indexed: 05/05/2024]
18
Liu J, Peng Z, Tu H, Qiu Y, Liu Y, Li X, Gao H, Pan H, Chen B, Liang C, Chen S, Qi J, Wang Y, Wei G, Jiao S. Oligotrophic microbes are recruited to resist multiple global change factors in agricultural subsoils. ENVIRONMENT INTERNATIONAL 2024;183:108429. [PMID: 38219540 DOI: 10.1016/j.envint.2024.108429] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/12/2023] [Revised: 12/13/2023] [Accepted: 01/04/2024] [Indexed: 01/16/2024]
19
Zhou X, Ma A, Chen X, Zhang Q, Guo X, Zhuang G. Climate Warming-Driven Changes in the Molecular Composition of Soil Dissolved Organic Matter Across Depth: A Case Study on the Tibetan Plateau. ENVIRONMENTAL SCIENCE & TECHNOLOGY 2023;57:16884-16894. [PMID: 37857299 DOI: 10.1021/acs.est.3c04899] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/21/2023]
20
Wang S, Heal KV, Zhang Q, Yu Y, Tigabu M, Huang S, Zhou C. Soil microbial community, dissolved organic matter and nutrient cycling interactions change along an elevation gradient in subtropical China. JOURNAL OF ENVIRONMENTAL MANAGEMENT 2023;345:118793. [PMID: 37619380 DOI: 10.1016/j.jenvman.2023.118793] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/10/2023] [Revised: 07/27/2023] [Accepted: 08/09/2023] [Indexed: 08/26/2023]
21
Zhang Q, Qin W, Feng J, Li X, Zhang Z, He JS, Schimel JP, Zhu B. Whole-soil-profile warming does not change microbial carbon use efficiency in surface and deep soils. Proc Natl Acad Sci U S A 2023;120:e2302190120. [PMID: 37523548 PMCID: PMC10410710 DOI: 10.1073/pnas.2302190120] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/08/2023] [Accepted: 06/26/2023] [Indexed: 08/02/2023]  Open
22
Taş N, Conejo N, Salmon VG. Metagenomes and Metagenome-Assembled Genome Sequences from Nitrogen-Fixing Alder Nodules. Microbiol Resour Announc 2023;12:e0126622. [PMID: 37014227 PMCID: PMC10190285 DOI: 10.1128/mra.01266-22] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/01/2022] [Accepted: 03/21/2023] [Indexed: 04/05/2023]  Open
23
He L, Sun X, Li S, Zhou W, Chen Z, Bai X. The vertical distribution and control factor of microbial biomass and bacterial community at macroecological scales. THE SCIENCE OF THE TOTAL ENVIRONMENT 2023;869:161754. [PMID: 36709888 DOI: 10.1016/j.scitotenv.2023.161754] [Citation(s) in RCA: 12] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/19/2022] [Revised: 01/04/2023] [Accepted: 01/17/2023] [Indexed: 06/18/2023]
24
Zhou X, Chen X, Qi X, Zeng Y, Guo X, Zhuang G, Ma A. Soil bacterial communities associated with multi-nutrient cycling under long-term warming in the alpine meadow. Front Microbiol 2023;14:1136187. [PMID: 36910214 PMCID: PMC9995882 DOI: 10.3389/fmicb.2023.1136187] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/02/2023] [Accepted: 02/06/2023] [Indexed: 02/25/2023]  Open
25
Liu H, Zhang H, Powell J, Delgado‐Baquerizo M, Wang J, Singh B. Warmer and drier ecosystems select for smaller bacterial genomes in global soils. IMETA 2023;2:e70. [PMID: 38868347 PMCID: PMC10989973 DOI: 10.1002/imt2.70] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 09/04/2022] [Revised: 11/01/2022] [Accepted: 11/28/2022] [Indexed: 06/14/2024]
26
Zhang X, Whalley PA, Gregory AS, Whalley WR, Coleman K, Neal AL, Mooney SJ, Soga K, Illangasekare TH. An overlooked mechanism underlying the attenuated temperature response of soil heterotrophic respiration. J R Soc Interface 2022;19:20220276. [PMID: 35855594 PMCID: PMC9297011 DOI: 10.1098/rsif.2022.0276] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/02/2023]  Open
27
Liu Y, Tian H, Li J, Wang H, Liu S, Liu X. Reduced precipitation neutralizes the positive impact of soil warming on soil microbial community in a temperate oak forest. THE SCIENCE OF THE TOTAL ENVIRONMENT 2022;806:150957. [PMID: 34656582 DOI: 10.1016/j.scitotenv.2021.150957] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/17/2021] [Revised: 10/08/2021] [Accepted: 10/09/2021] [Indexed: 06/13/2023]
28
Alves RJE, Callejas IA, Marschmann GL, Mooshammer M, Singh HW, Whitney B, Torn MS, Brodie EL. Kinetic Properties of Microbial Exoenzymes Vary With Soil Depth but Have Similar Temperature Sensitivities Through the Soil Profile. Front Microbiol 2021;12:735282. [PMID: 34917043 PMCID: PMC8669745 DOI: 10.3389/fmicb.2021.735282] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/02/2021] [Accepted: 11/03/2021] [Indexed: 11/13/2022]  Open
29
Dove NC, Barnes ME, Moreland K, Graham RC, Berhe AA, Hart SC. Depth dependence of climatic controls on soil microbial community activity and composition. ISME COMMUNICATIONS 2021;1:78. [PMID: 37938290 PMCID: PMC9723684 DOI: 10.1038/s43705-021-00081-5] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/03/2021] [Revised: 11/29/2021] [Accepted: 12/01/2021] [Indexed: 05/11/2023]
30
Liao W, Tong D, Li Z, Nie X, Liu Y, Ran F, Liao S. Characteristics of microbial community composition and its relationship with carbon, nitrogen and sulfur in sediments. THE SCIENCE OF THE TOTAL ENVIRONMENT 2021;795:148848. [PMID: 34246137 DOI: 10.1016/j.scitotenv.2021.148848] [Citation(s) in RCA: 35] [Impact Index Per Article: 8.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/04/2021] [Revised: 05/16/2021] [Accepted: 06/30/2021] [Indexed: 06/13/2023]
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