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For: Chen Y, Wang Y, Paez-Espino D, Polz MF, Zhang T. Prokaryotic viruses impact functional microorganisms in nutrient removal and carbon cycle in wastewater treatment plants. Nat Commun 2021;12:5398. [PMID: 34518545 PMCID: PMC8438041 DOI: 10.1038/s41467-021-25678-1] [Citation(s) in RCA: 59] [Impact Index Per Article: 14.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/15/2020] [Accepted: 08/24/2021] [Indexed: 11/09/2022]  Open
Number Cited by Other Article(s)
1
Yan P, Zhu J, Ji Q, Hou G, Liang G, Liu X, Liu R. Significant impact of bleaching treatment on phage-host interaction dynamics in a full-scale wastewater treatment plant. Sci Rep 2025;15:19165. [PMID: 40450127 DOI: 10.1038/s41598-025-04743-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/28/2025] [Accepted: 05/28/2025] [Indexed: 06/03/2025]  Open
2
Chu Y, Dong X, Fang S, Gan L, Lee X, Zhou L. Viruses in human-impacted estuarine ecotones: Distribution, metabolic potential, and environmental risks. WATER RESEARCH 2025;282:123750. [PMID: 40328153 DOI: 10.1016/j.watres.2025.123750] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/23/2025] [Revised: 04/03/2025] [Accepted: 04/29/2025] [Indexed: 05/08/2025]
3
Yao J, Zeng Y, Hong X, Wang M, Zhang Q, Chen Y, Gou M, Xia ZY, Tang YQ. Phages-bacteria interactions underlying the dynamics of polyhydroxyalkanoate-producing mixed microbial cultures via meta-omics study. mSystems 2025;10:e0020025. [PMID: 40152616 PMCID: PMC12013262 DOI: 10.1128/msystems.00200-25] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/10/2025] [Accepted: 02/26/2025] [Indexed: 03/29/2025]  Open
4
Li Z, Liu B, Cao B, Cun S, Liu R, Liu X. The potential role of viruses in antibiotic resistance gene dissemination in activated sludge viromes. JOURNAL OF HAZARDOUS MATERIALS 2025;486:137046. [PMID: 39752831 DOI: 10.1016/j.jhazmat.2024.137046] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/10/2024] [Revised: 12/12/2024] [Accepted: 12/29/2024] [Indexed: 03/12/2025]
5
You J, Ye L, Zhang S, Zhao J, Zhao Y, He Y, Chen J, Kennes C, Chen D. Electrode functional microorganisms in bioelectrochemical systems and its regulation: A review. Biotechnol Adv 2025;79:108521. [PMID: 39814087 DOI: 10.1016/j.biotechadv.2025.108521] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/20/2024] [Revised: 12/03/2024] [Accepted: 01/12/2025] [Indexed: 01/18/2025]
6
Weinheimer AR, Ha AD, Aylward FO. Towards a unifying phylogenomic framework for tailed phages. PLoS Genet 2025;21:e1011595. [PMID: 39908317 PMCID: PMC11835377 DOI: 10.1371/journal.pgen.1011595] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/02/2024] [Revised: 02/18/2025] [Accepted: 01/28/2025] [Indexed: 02/07/2025]  Open
7
Zhang N, Zhu D, Yao Z, Zhu DZ. Virus-prokaryote interactions assist pollutant removal in constructed wetlands. BIORESOURCE TECHNOLOGY 2025;416:131791. [PMID: 39528031 DOI: 10.1016/j.biortech.2024.131791] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/15/2024] [Revised: 11/06/2024] [Accepted: 11/07/2024] [Indexed: 11/16/2024]
8
Li J, Sun Y, Zhang Q, Liu S, Liu P, Zhang XX. Unveiling the potential role of virus-encoded polyphosphate kinases in enhancing phosphorus removal in activated sludge systems. WATER RESEARCH 2025;268:122678. [PMID: 39476778 DOI: 10.1016/j.watres.2024.122678] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/19/2024] [Revised: 10/10/2024] [Accepted: 10/20/2024] [Indexed: 12/19/2024]
9
Zeng Y, Zhong X, Chen Y, Gou M, Yu K, Tang YQ. Characteristics of Phages and Their Interactions With Hosts in Anaerobic Reactors. Environ Microbiol 2025;27:e70040. [PMID: 39868667 DOI: 10.1111/1462-2920.70040] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/01/2024] [Revised: 12/18/2024] [Accepted: 01/03/2025] [Indexed: 01/28/2025]
10
Zhang Y, Xue B, Mao Y, Chen X, Yan W, Wang Y, Wang Y, Liu L, Yu J, Zhang X, Chao S, Topp E, Zheng W, Zhang T. High-throughput single-cell sequencing of activated sludge microbiome. ENVIRONMENTAL SCIENCE AND ECOTECHNOLOGY 2025;23:100493. [PMID: 39430728 PMCID: PMC11490935 DOI: 10.1016/j.ese.2024.100493] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 04/27/2024] [Revised: 09/11/2024] [Accepted: 09/11/2024] [Indexed: 10/22/2024]
11
Zhang Y, Zheng X, Yan W, Wang D, Chen X, Wang Y, Zhang T. Method evaluation for viruses in activated sludge: Concentration, sequencing, and identification. THE SCIENCE OF THE TOTAL ENVIRONMENT 2024;955:176886. [PMID: 39419205 DOI: 10.1016/j.scitotenv.2024.176886] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/19/2024] [Revised: 10/09/2024] [Accepted: 10/10/2024] [Indexed: 10/19/2024]
12
Zang B, Zhou H, Zhao Y, Sano D, Chen R. Investigating potential auxiliary anaerobic digestion activity of phage under polyvinyl chloride microplastic stress. JOURNAL OF HAZARDOUS MATERIALS 2024;480:135950. [PMID: 39326145 DOI: 10.1016/j.jhazmat.2024.135950] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/11/2024] [Revised: 08/18/2024] [Accepted: 09/23/2024] [Indexed: 09/28/2024]
13
Zhu D, Liu SY, Sun MM, Yi XY, Duan GL, Ye M, Gillings MR, Zhu YG. Adaptive expression of phage auxiliary metabolic genes in paddy soils and their contribution toward global carbon sequestration. Proc Natl Acad Sci U S A 2024;121:e2419798121. [PMID: 39602267 PMCID: PMC11626168 DOI: 10.1073/pnas.2419798121] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/27/2024] [Accepted: 10/21/2024] [Indexed: 11/29/2024]  Open
14
Zhao Y, Fan L, Gao SH, Huang F, Lei Z, Wang W, Gao R, Dai Z, Li Q, Liang B, Wang A. Strain-level multidrug-resistant pathogenic bacteria in urban wastewater treatment plants: Transmission, source tracking and evolution. WATER RESEARCH 2024;267:122538. [PMID: 39357157 DOI: 10.1016/j.watres.2024.122538] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/11/2024] [Revised: 09/23/2024] [Accepted: 09/26/2024] [Indexed: 10/04/2024]
15
Gao FZ, Hu LX, Liu YS, Qiao LK, Chen ZY, Su JQ, He LY, Bai H, Zhu YG, Ying GG. Unveiling the overlooked small-sized microbiome in river ecosystems. WATER RESEARCH 2024;265:122302. [PMID: 39178591 DOI: 10.1016/j.watres.2024.122302] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/25/2024] [Revised: 08/12/2024] [Accepted: 08/18/2024] [Indexed: 08/26/2024]
16
Tang A, Zhang J, Huang J, Deng Y, Wang D, Yu P, Zhao R, Wang Y, Chen Z, Zhang T, Li B. Decrypting the viral community in aerobic activated sludge reactors treating antibiotic production wastewater. WATER RESEARCH 2024;265:122253. [PMID: 39167968 DOI: 10.1016/j.watres.2024.122253] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/11/2024] [Revised: 07/31/2024] [Accepted: 08/10/2024] [Indexed: 08/23/2024]
17
Yuan L, Yu P, Huang X, Zhao Z, Chen L, Ju F. Seasonal succession, host associations, and biochemical roles of aquatic viruses in a eutrophic lake plagued by cyanobacterial blooms. ENVIRONMENT INTERNATIONAL 2024;193:109125. [PMID: 39547087 DOI: 10.1016/j.envint.2024.109125] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/08/2024] [Revised: 10/31/2024] [Accepted: 11/04/2024] [Indexed: 11/17/2024]
18
Zhang Q, Ji XM, Wang X, Wang W, Xu X, Zhang Q, Xing D, Ren N, Lee DJ, Chen C. Differentiation of the Anammox core microbiome: Unraveling the evolutionary impetus of scalable gene flow. WATER RESEARCH 2024;268:122580. [PMID: 39383807 DOI: 10.1016/j.watres.2024.122580] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/19/2024] [Revised: 09/27/2024] [Accepted: 10/04/2024] [Indexed: 10/11/2024]
19
Du Y, Zuo W, Sun F. Imputing Metagenomic Hi-C Contacts Facilitates the Integrative Contig Binning Through Constrained Random Walk with Restart. J Comput Biol 2024;31:1008-1021. [PMID: 39246231 DOI: 10.1089/cmb.2024.0663] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 09/10/2024]  Open
20
Wang W, Song W, Majzoub ME, Feng X, Xu B, Tao J, Zhu Y, Li Z, Qian PY, Webster NS, Thomas T, Fan L. Decoupling of strain- and intrastrain-level interactions of microbiomes in a sponge holobiont. Nat Commun 2024;15:8205. [PMID: 39294150 PMCID: PMC11410982 DOI: 10.1038/s41467-024-52464-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/31/2023] [Accepted: 09/07/2024] [Indexed: 09/20/2024]  Open
21
Wu Z, Liu T, Chen Q, Chen T, Hu J, Sun L, Wang B, Li W, Ni J. Unveiling the unknown viral world in groundwater. Nat Commun 2024;15:6788. [PMID: 39117653 PMCID: PMC11310336 DOI: 10.1038/s41467-024-51230-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/04/2023] [Accepted: 08/01/2024] [Indexed: 08/10/2024]  Open
22
Shi Z, Long X, Zhang C, Chen Z, Usman M, Zhang Y, Zhang S, Luo G. Viral and Bacterial Community Dynamics in Food Waste and Digestate from Full-Scale Biogas Plants. ENVIRONMENTAL SCIENCE & TECHNOLOGY 2024;58:13010-13022. [PMID: 38989650 DOI: 10.1021/acs.est.4c04109] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 07/12/2024]
23
Liang J, Zheng X, Ning T, Wang J, Wei X, Tan L, Shen F. Revealing the Viable Microbial Community of Biofilm in a Sewage Treatment System Using Propidium Monoazide Combined with Real-Time PCR and Metagenomics. Microorganisms 2024;12:1508. [PMID: 39203351 PMCID: PMC11356008 DOI: 10.3390/microorganisms12081508] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/26/2024] [Revised: 07/16/2024] [Accepted: 07/19/2024] [Indexed: 09/03/2024]  Open
24
Wang D, Liu L, Xu X, Wang C, Wang Y, Deng Y, Zhang T. Distributions, interactions, and dynamics of prokaryotes and phages in a hybrid biological wastewater treatment system. MICROBIOME 2024;12:134. [PMID: 39039555 PMCID: PMC11265110 DOI: 10.1186/s40168-024-01853-6] [Citation(s) in RCA: 5] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/22/2023] [Accepted: 06/03/2024] [Indexed: 07/24/2024]
25
Tian L, Jackson K, He L, Khan S, Thirugnanasampanthar M, Gomez M, Bayat F, Didar TF, Hosseinidoust Z. High-throughput fabrication of antimicrobial phage microgels and example applications in food decontamination. Nat Protoc 2024;19:1591-1622. [PMID: 38413781 DOI: 10.1038/s41596-024-00964-6] [Citation(s) in RCA: 8] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/15/2023] [Accepted: 12/14/2023] [Indexed: 02/29/2024]
26
Zhang J, Tang A, Jin T, Sun D, Guo F, Lei H, Lin L, Shu W, Yu P, Li X, Li B. A panoramic view of the virosphere in three wastewater treatment plants by integrating viral-like particle-concentrated and traditional non-concentrated metagenomic approaches. IMETA 2024;3:e188. [PMID: 38898980 PMCID: PMC11183165 DOI: 10.1002/imt2.188] [Citation(s) in RCA: 13] [Impact Index Per Article: 13.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 02/18/2024] [Revised: 03/06/2024] [Accepted: 03/07/2024] [Indexed: 06/21/2024]
27
George NA, Zhou Z, Anantharaman K, Hug LA. Discarded diversity: Novel megaphages, auxiliary metabolic genes, and virally encoded CRISPR-Cas systems in landfills. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2024:2024.05.30.596742. [PMID: 38854013 PMCID: PMC11160803 DOI: 10.1101/2024.05.30.596742] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/11/2024]
28
Wang Y, Zhang Z, Kang J, Chen B, Hong W, Lv B, Wang T, Qian H. Phages in different habitats and their ability to carry antibiotic resistance genes. JOURNAL OF HAZARDOUS MATERIALS 2024;469:133941. [PMID: 38447371 DOI: 10.1016/j.jhazmat.2024.133941] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/26/2023] [Revised: 02/19/2024] [Accepted: 02/29/2024] [Indexed: 03/08/2024]
29
Liu W, Xu C, Li T, Ren Z, Hao S, Chen Z, Huang X, Wen X. Temporal Dynamics and Contribution of Phage Community to the Prevalence of Antibiotic Resistance Genes in a Full-Scale Sludge Anaerobic Digestion Plant. ENVIRONMENTAL SCIENCE & TECHNOLOGY 2024;58:6296-6304. [PMID: 38556999 DOI: 10.1021/acs.est.4c00712] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 04/04/2024]
30
Zhao H, Yang M, Fan X, Gui Q, Yi H, Tong Y, Xiao W. A Metagenomic Investigation of Potential Health Risks and Element Cycling Functions of Bacteria and Viruses in Wastewater Treatment Plants. Viruses 2024;16:535. [PMID: 38675877 PMCID: PMC11054999 DOI: 10.3390/v16040535] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/22/2024] [Revised: 03/27/2024] [Accepted: 03/28/2024] [Indexed: 04/28/2024]  Open
31
Schmidtke DT, Hickey AS, Liachko I, Sherlock G, Bhatt AS. Analysis and culturing of the prototypic crAssphage reveals a phage-plasmid lifestyle. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2024:2024.03.20.585998. [PMID: 38562748 PMCID: PMC10983915 DOI: 10.1101/2024.03.20.585998] [Citation(s) in RCA: 6] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 04/04/2024]
32
Bhattarai B, Bhattacharjee AS, Coutinho FH, Goel R. Investigating the viral ecology and contribution to the microbial ecology in full-scale mesophilic anaerobic digesters. CHEMOSPHERE 2024;349:140743. [PMID: 37984648 DOI: 10.1016/j.chemosphere.2023.140743] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/02/2023] [Revised: 11/14/2023] [Accepted: 11/15/2023] [Indexed: 11/22/2023]
33
Wang D, Shang J, Lin H, Liang J, Wang C, Sun Y, Bai Y, Qu J. Identifying ARG-carrying bacteriophages in a lake replenished by reclaimed water using deep learning techniques. WATER RESEARCH 2024;248:120859. [PMID: 37976954 DOI: 10.1016/j.watres.2023.120859] [Citation(s) in RCA: 10] [Impact Index Per Article: 10.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/16/2023] [Revised: 09/16/2023] [Accepted: 11/10/2023] [Indexed: 11/19/2023]
34
Kallies R, Hu D, Abdulkadir N, Schloter M, Rocha U. Identification of Huge Phages from Wastewater Metagenomes. Viruses 2023;15:2330. [PMID: 38140571 PMCID: PMC10747093 DOI: 10.3390/v15122330] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/29/2023] [Revised: 11/20/2023] [Accepted: 11/22/2023] [Indexed: 12/24/2023]  Open
35
Wu R, Davison MR, Nelson WC, Smith ML, Lipton MS, Jansson JK, McClure RS, McDermott JE, Hofmockel KS. Hi-C metagenome sequencing reveals soil phage-host interactions. Nat Commun 2023;14:7666. [PMID: 37996432 PMCID: PMC10667309 DOI: 10.1038/s41467-023-42967-z] [Citation(s) in RCA: 17] [Impact Index Per Article: 8.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/02/2023] [Accepted: 10/27/2023] [Indexed: 11/25/2023]  Open
36
Zhao Y, Huang F, Wang W, Gao R, Fan L, Wang A, Gao SH. Application of high-throughput sequencing technologies and analytical tools for pathogen detection in urban water systems: Progress and future perspectives. THE SCIENCE OF THE TOTAL ENVIRONMENT 2023;900:165867. [PMID: 37516185 DOI: 10.1016/j.scitotenv.2023.165867] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/01/2023] [Revised: 07/25/2023] [Accepted: 07/26/2023] [Indexed: 07/31/2023]
37
Tan Y, Yu P, Huang D, Yuan MM, Yu Z, Lu H, Alvarez PJJ, Zhu L. Enhanced Bacterium-Phage Symbiosis in Attached Microbial Aggregates on a Membrane Surface Facing Elevated Hydraulic Stress. ENVIRONMENTAL SCIENCE & TECHNOLOGY 2023;57:17324-17337. [PMID: 37930060 DOI: 10.1021/acs.est.3c05452] [Citation(s) in RCA: 10] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/07/2023]
38
Palomo A, Dechesne A, Smets BF, Zheng Y. Narrow host range phages infect essential bacteria for water purification reactions in groundwater-fed rapid sand filters. WATER RESEARCH 2023;245:120655. [PMID: 37748347 DOI: 10.1016/j.watres.2023.120655] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/21/2023] [Revised: 09/18/2023] [Accepted: 09/19/2023] [Indexed: 09/27/2023]
39
Chen T, Deng C, Wu Z, Liu T, Zhang Y, Xu X, Zhao X, Li J, Li S, Xu N, Yu K. Metagenomic analysis unveils the underexplored roles of prokaryotic viruses in a full-scale landfill leachate treatment plant. WATER RESEARCH 2023;245:120611. [PMID: 37722141 DOI: 10.1016/j.watres.2023.120611] [Citation(s) in RCA: 9] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/16/2023] [Revised: 09/06/2023] [Accepted: 09/09/2023] [Indexed: 09/20/2023]
40
Du Y, Sun F. MetaCC allows scalable and integrative analyses of both long-read and short-read metagenomic Hi-C data. Nat Commun 2023;14:6231. [PMID: 37802989 PMCID: PMC10558524 DOI: 10.1038/s41467-023-41209-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/16/2023] [Accepted: 08/25/2023] [Indexed: 10/08/2023]  Open
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Fan L, Peng W, Duan H, Lü F, Zhang H, He P. Presence and role of viruses in anaerobic digestion of food waste under environmental variability. MICROBIOME 2023;11:170. [PMID: 37537690 PMCID: PMC10401857 DOI: 10.1186/s40168-023-01585-z] [Citation(s) in RCA: 10] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 08/18/2022] [Accepted: 05/28/2023] [Indexed: 08/05/2023]
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Cheng Z, Li X, Palomo A, Yang Q, Han L, Wu Z, Li Z, Zhang M, Chen L, Zhao B, Yu K, Zhang C, Hou S, Zheng Y, Xia Y. Virus impacted community adaptation in oligotrophic groundwater environment revealed by Hi-C coupled metagenomic and viromic study. JOURNAL OF HAZARDOUS MATERIALS 2023;458:131944. [PMID: 37390685 DOI: 10.1016/j.jhazmat.2023.131944] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/24/2023] [Revised: 06/21/2023] [Accepted: 06/24/2023] [Indexed: 07/02/2023]
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Ariyadasa S, Taylor W, Weaver L, McGill E, Billington C, Pattis I. Nonbacterial Microflora in Wastewater Treatment Plants: an Underappreciated Potential Source of Pathogens. Microbiol Spectr 2023;11:e0048123. [PMID: 37222623 PMCID: PMC10269893 DOI: 10.1128/spectrum.00481-23] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/31/2023] [Accepted: 05/09/2023] [Indexed: 05/25/2023]  Open
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Liao H, Liu C, Ai C, Gao T, Yang QE, Yu Z, Gao S, Zhou S, Friman VP. Mesophilic and thermophilic viruses are associated with nutrient cycling during hyperthermophilic composting. THE ISME JOURNAL 2023;17:916-930. [PMID: 37031344 PMCID: PMC10202948 DOI: 10.1038/s41396-023-01404-1] [Citation(s) in RCA: 33] [Impact Index Per Article: 16.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/05/2022] [Revised: 03/20/2023] [Accepted: 03/22/2023] [Indexed: 04/10/2023]
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Deng X, Yuan J, Chen L, Chen H, Wei C, Nielsen PH, Wuertz S, Qiu G. CRISPR-Cas phage defense systems and prophages in Candidatus Accumulibacter. WATER RESEARCH 2023;235:119906. [PMID: 37004306 DOI: 10.1016/j.watres.2023.119906] [Citation(s) in RCA: 10] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/13/2022] [Revised: 02/27/2023] [Accepted: 03/21/2023] [Indexed: 06/19/2023]
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Huang DQ, Wu Q, Yang JH, Jiang Y, Li ZY, Fan NS, Jin RC. Deciphering endogenous and exogenous regulations of anammox consortia in responding to lincomycin by multiomics: quorum sensing and CRISPR system. WATER RESEARCH 2023;239:120061. [PMID: 37201375 DOI: 10.1016/j.watres.2023.120061] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/06/2023] [Revised: 04/11/2023] [Accepted: 05/08/2023] [Indexed: 05/20/2023]
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Yuan L, Ju F. Potential Auxiliary Metabolic Capabilities and Activities Reveal Biochemical Impacts of Viruses in Municipal Wastewater Treatment Plants. ENVIRONMENTAL SCIENCE & TECHNOLOGY 2023;57:5485-5498. [PMID: 36947091 DOI: 10.1021/acs.est.2c07800] [Citation(s) in RCA: 9] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/18/2023]
48
Liu R, Li Z, Han G, Cun S, Hou D, Yu Z, Xue K, Liu X. Microbial density-dependent viral dynamics and low activity of temperate phages in the activated sludge process. WATER RESEARCH 2023;232:119709. [PMID: 36764107 DOI: 10.1016/j.watres.2023.119709] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/16/2022] [Revised: 01/31/2023] [Accepted: 02/04/2023] [Indexed: 06/18/2023]
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Zhang H, Lyu L, Hu C, Ren T, Li F, Shi Y, Han M, Sun Y, Zhang F. Enhanced purification of kitchen-oil wastewater driven synergistically by surface microelectric fields and microorganisms. ENVIRONMENT INTERNATIONAL 2023;174:107878. [PMID: 36963154 DOI: 10.1016/j.envint.2023.107878] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/01/2022] [Revised: 02/12/2023] [Accepted: 03/13/2023] [Indexed: 06/18/2023]
50
Zhang Y, Wang Y, Tang M, Zhou J, Zhang T. The microbial dark matter and "wanted list" in worldwide wastewater treatment plants. MICROBIOME 2023;11:59. [PMID: 36973807 PMCID: PMC10045942 DOI: 10.1186/s40168-023-01503-3] [Citation(s) in RCA: 17] [Impact Index Per Article: 8.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 08/12/2022] [Accepted: 02/24/2023] [Indexed: 06/18/2023]
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