Reactive oxygen species affect the potential for mineralization processes in permeable intertidal flats

Iron at the helm: Steering arsenic speciation through redox processes in soils

The toxicity and bioavailability of arsenic (As) in soils are largely determined by its speciation. Iron (Fe) is widely present in soils with a strong affinity for As, and therefore the environmental behaviors of As and Fe oxides (including oxides, hydrates and hydrated oxides) are closely correlated with each other. The redox fluctuations of Fe driven by changes in the environment can significantly affect As speciation and its fate in soils. The interaction between Fe and As has garnered widespread attention, and the adsorption mechanisms of As by Fe oxides have also been well-documented. However, there is still a lack of systematic understanding of how Fe redox dynamics affects As speciation depending on the soil environmental conditions. In this review, we summarize the mechanisms for As speciation transformation and redistribution, as well as the role of environmental factors in the main Fe redox processes in soils. These processes include the biotic Fe oxidation mediated by Fe-oxidizing bacteria, abiotic Fe oxidation by oxygen or manganese oxides, dissimilatory Fe reduction mediated by Fe-reducing bacteria, and Fe(II)-catalyzed transformation of Fe oxides. This review contributes to a deeper understanding of the environmental behaviors of Fe and As in soils, and provides theoretical guidance for the development of remediation strategies for As-contaminated soils.

Insight into the characterization of dissolved organic matter in shallow lakes with different trophic states and their net photo-generation capacity of reactive oxygen species

Reactive oxygen species (ROS) are ubiquitous in the aquatic environment, and they are closely related to several biogeochemical processes. Dissolved organic matter (DOM) is one of the main photosensitizers involved in the formation of ROS and it also serves as a sink for ROS by involving in scavenging, quenching, and antioxidant reactions. The net effect of these processes depends on the concentration, source, and composition of the DOM. Current studies have mainly focused on the steady-state concentration of reactive oxygen species ([ROS]ss) produced by the total DOM in lakes with different trophic states and ignored the net photo-generation capacity of ROS ([ROS]DOM, the net steady concentration of ROS generated per unit mass of DOM), leading to a vague understanding of the photochemical properties of DOM in aquatic systems, especially in shallow lakes with different trophic states. In this study, the optical composition of DOM was determined with optical characterization, such as specific UV-Vis and excitation-emission matrices with fluorescence regional integration (FRI-EEMs), and its molecular characteristics were analyzed by Fourier-transform ion cyclotron resonance mass spectrometry (FT-ICR MS). The results revealed that DOM in lakes with different trophic states had mixed endogenous and exogenous characteristics, accompanied by an increasing trend in endogenous characteristics with the increasing trophic state of lakes. Spectroscopic probes were used to detect the steady-state concentration of ROS and further calculate the [ROS]DOM, such as [3DOM*]DOM, [•OH]DOM, [1O2]DOM and [O2.-]DOM. The results indicated that the [ROS]DOM in lakes with light-eutrophic states was significantly higher than that in lakes with moderate-eutrophic and hyper-eutrophic states, which indicated that the DOM in lower trophic state lakes has a higher net photo-generation capacity of ROS. Pearson analysis results showed that [3DOM*]DOM, [•OH]DOM, [1O2]DOM and [O2.-]DOM had a significant positive correlation with lignin/CRAMs-like, aromatic, and tannin compounds, as well as the fluorescence components, fulvic- and humic-like substances and the UV-Vis indicator: SUVA254 revealed that DOM with higher humification and aromaticity had a higher net photo-generation capacity of ROS in different trophic state lakes. In addition, the molecular uniqueness of the DOM was dominated by lignin/CRAMs-like and aromatic compounds, which were positively correlated with [ROS]DOM, in the following order: [3DOM*]DOM > [•OH]DOM > [1O2]DOM > [O2.-]DOM. This study emphasizes the importance of focusing on the source, composition, and net photo-generation capacity of ROS by DOM, which would help evaluate the photochemical potential and other behaviors of DOM in lakes with different trophic states and provide guidance for the risk assessment of DOM input from different sources.

Rhythmic radial oxygen loss enhances soil phosphorus bioavailability

Phosphorus (P) availability is vital for global primary productivity, yet it is often immobilized in soils by redox-inert crystalline iron (oxy)hydroxides. Here we show that diel radial oxygen loss (ROL) from plant roots induces redox fluctuations in the rhizosphere, activating these iron minerals and enhancing P mobilization. Nighttime reduction and daytime oxidation drive the formation of reactive metastable iron phases (RMPs) on root surfaces, forming a redox-active iron plaque. These RMPs undergo rapid dissolution-reformation cycles, facilitating P transfer from soil to porewater for plant uptake. Using multiple aquatic plants from agriculturally developed regions, we demonstrate that ROL broadly enhances soil P availability. In rice paddies, ROL-activated P release accounts for 8.7% of global P fertilizer input, contributing an estimated economic value of USD 0.52 billion annually. Our findings uncover a previously overlooked redox mechanism by which plants enhance P acquisition, with broad implications for nutrient cycling and agricultural sustainability.

Invisible threats from typical endocrine disrupting compounds in estuarine environments caused by continuing seawater incursion: In-situ evidence of bio-geochemical processes captured by diffusive gradients in thin films

Continued seawater incursion significantly affects the fate of pollutants in coastal estuaries, yet understanding of the in-situ behavior of endocrine-disrupting compounds (EDCs) in these areas remains limited. The distribution, transport and microbial response of two model EDCs, bisphenol A (BPA) and nonylphenol (NP), in three estuarine zones of slight (SZ), moderate (MZ) and complete (CZ) seawater incursion were investigated in-situ. Results showed seawater incursion reshaped the environmental gradients of the coastal estuaries on a spatial scale. Varying salinity gradient and tidal hydrodynamic conditions altered the dependence of EDCs on organic carbon, and promoted the release of accumulated EDCs from estuarine sediments resulting in the lowest residues of BPA (2.74 ± 0.76 μg/kg) and NP (10.25 ± 5.86 μg/kg) in the MZ. The resupply potential of BPA (R = 0.171 ± 0.058) and NP (R = 0.107 ± 0.015) from sediment to porewater was significantly higher in the SZ than in other zones (p < 0.001), due to both higher contaminant accumulation in this zone and inhibited resupply in MZ and CZ caused by seawater incursion. Furthermore, seawater incursion significantly reduced the microbial community diversity in the CZ (p < 0.001), being dominated by Vibrio (67.00 ± 1.13 %), and accordingly weakened the ability to transform organic matter in this region. Based on predicted sea level rise and the transport characteristics of EDCs under increased seawater incursion, it is estimated that the cumulative additional release of BPA and NP in the estuary will reach 1.8 and 1.5 tons by 2100, respectively. In order to mitigate the risk of additional estuarine EDCs release due to seawater incursion, increasing vegetation cover, strict monitoring, and climate policy interventions may be effective strategies.

A Novel Perspective on the Role of Hydroxyl Radicals in Soil Organic Carbon Mineralization within the Detritusphere: Stimulating C-Degrading Enzyme Activities

Detritusphere is a hotspot of carbon cycling in terrestrial ecosystems, yet the mineralization of soil organic carbon (SOC) within this microregion associated with reactive oxygen species (ROS) remains unclear. Herein, we investigated ROS production and distribution in the detritusphere of six representative soils and evaluated their contributions to SOC mineralization. We found that ROS production was significantly correlated with several soil chemical and biological factors, including pH, water-soluble phenols, water-extractable organic carbon, phenol oxidase activity, surface-bound or complexed Fe(II) and Fe(II) in low-crystalline minerals, highly crystalline Fe(II)-bearing minerals, and SOC. These factors collectively contributed to 99.6% of the variation in ROS production, as revealed by redundancy analyses. Among ROS, hydroxyl radicals (•OH) were key contributors to SOC mineralization, responsible for 10.4%-38.7% of CO2 emissions in ROS quenching experiments. Inhibiting •OH production decreased C-degrading enzyme activities, indicating that •OH stimulates CO2 emissions by increasing enzyme activity. Structural equation modeling further demonstrated that •OH promotes C-degrading enzyme activities by degrading water-soluble phenols to unlock the "enzyme latch" and by increasing SOC availability to upregulate C-degrading gene expression. These pathways contributed equally to SOC mineralization and exceeded its direct effect. These findings provide detailed insight into the mechanistic pathways of •OH-mediated carbon dynamics within the detritusphere.

Production of Reactive Oxygen Species during Redox Manipulation and Its Potential Impacts on Activated Sludge Wastewater Treatment Processes

Reactive oxygen species (ROS) are ubiquitous in redox-fluctuating environments, exerting profound impacts on biogeochemical cycles. However, whether ROS can be generated during redox manipulation in activated sludge wastewater treatment processes (AS-WTPs) and the underlying impacts remain largely unknown. This study demonstrates that ROS production is ubiquitous in AS-WTPs due to redox manipulation and that the frequency and capacity of ROS production depend on the operating modes. The anaerobic/oxic continuous-flow reactor showed persistent ROS generation (0.8-2.1 μM of instantaneous H2O2), whereas the oxic/anoxic sequencing batch reactor (0.21-0.28 mM of H2O2 per cycle) and the anaerobic/anoxic digestion reactor (0.27-0.29 mM of H2O2 per cycle) exhibited periodic ROS production. Our results illustrated that ROS generated during redox manipulation can contribute to the removal of organic micropollutants. Due to their high activity, ROS can directly accelerate the abiotic oxidation of organic phenolics and Fe(II) minerals in sludges. ROS could also affect biotic nitrification by changing the microbial community composition and regulating the relative expression of functional genes, such as amoA, nrxA, and nrxB. This research demonstrates the ubiquitous production of ROS during redox manipulation in AS-WTPs, which provides new insights into pollutant removal and the abiotic and biotic elemental transformation in AS-WTPs.

The substantial generation of photochemically produced reactive intermediates (PPRIs) in algae-type zones from one large shallow lake promoted the removal of organic pollutants

Photochemically produced reactive intermediates (PPRIs) are ubiquitously present in aquatic systems and hold significant importance in biogeochemical cycles. The photochemical reaction of dissolved organic matter (DOM), known as photosensitizers upon irradiation, is the main pathway for PPRIs generation. However, the PPRIs produced by algal-derived organic matter (ADOM) and their environmental effects remains elusive. This study confirmed that substantial PPRIs were generated by ADOM in the algal-derived areas. UV absorption spectra, fluorescence spectra and Fourier transform ion cyclotron resonance mass spectrometry (FT-ICR MS) were then indicated a significant correlation between the molecular weight of DOM and the quantum yield of PPRIs, with lower molecular weight of DOM exhibiting a higher potential for PPRIs generation. Orthogonal partial least squares (OPLS) were used to build novel multivariate predictive models for indicating the PPRIs production in algae-type zone. Also, the higher concentrations of PPRIs could significantly removal different kinds of organic pollutants, such as bisphenol A (BPA), sulfadiazine (SDZ) and 17α-ethinylestradiol (EE2). Quenching experiments further elucidated that 3DOM⁎ was the key specie for pollutants degradation, serving as the precursor to generate a series of PPRIs. This study highlighted the importance of PPRIs generated from ADOM in the natural attenuation of pollutants and provided a new insight for understanding the self-purification in aquatic system.

The metabolic characteristics and environmental adaptations of the intertidal bacterium Palleronia sp. LCG004

The intertidal zone, a dynamic interface of marine, atmospheric, and terrestrial ecosystems, exposes microorganisms to rapid shifts in temperature, salinity, and oxidative stress. Strain LCG004, representing a novel Palleronia species, was isolated from the Lu Chao Harbor's intertidal seawater in the Western Pacific Ocean. The genome of the organism reveals its metabolic versatility, enabling the utilization of various organic substrates-ranging from organic acids, amino acids, to sugars, and encompassing complex carbohydrates-as well as adept handling of inorganic nutrients, thereby highlighting its significant role in the cycling of nutrients. The strain is equipped with multiple osmoprotectant transporters, deoxyribodipyrimidine photo-lyase, and a comprehensive antioxidant defense system, featuring with multiple catalases, peroxidases, and superoxide dismutases, enabling it to withstand ever-changing environmental conditions, UV radiation, and oxidative challenges. Notably, LCG004 exhibited enhanced growth and cell aggregation under oligotrophic conditions, promoted by light exposure, underscoring the significant influence of light on its morphological and physiological attributes. This study elucidates strain LCG004's metabolic characteristics and ecological potential, and offers insights into its contributions to biogeochemical cycles and survival strategies in one of nature's most fluctuating environments.

The generation and transformation mechanisms of reactive oxygen species in the environment and their implications for pollution control processes: A review

Reactive oxygen species (ROS), substances with strong activity generated by oxygen during electron transfer, play a significant role in the decomposition of organic matter in various environmental settings, including soil, water and atmosphere. Although ROS has a short lifespan (ranging from a few nanoseconds to a few days), it continuously generated during the interaction between microorganisms and their environment, especially in environments characterized by strong ultraviolet radiation, fluctuating oxygen concentration or redox conditions, and the abundance of metal minerals. A comprehensive understanding of the fate of ROS in nature can provide new ideas for pollutant degradation and is of great significance for the development of green degradation technologies for organic pollutants. At present, the review of ROS generally revolves around various advanced oxidation processes, but lacks a description and summary of the fate of ROS in nature, this article starts with the definition of reactive oxidants species and reviews the production, migration, and transformation mechanisms of ROS in soil, water and atmospheric environments, focusing on recent developments. In addition, the stimulating effects of ROS on organisms were reviewed. Conclusively, the article summarizes the classic processes, possible improvements, and future directions for ROS-mediated degradation of pollutants. This review offers suggestions for future research directions in this field and provides the possible ROS technology application in pollutants treatment.

The effect of redox fluctuation on carbon mineralization in riparian soil: An analysis of the hotspot zone of reactive oxygen species production

Riparian zones are important depositional environments at the catchment scale and provide environmental services such as carbon sequestration. This zone is a highly dynamic interface for oxygen and electron exchange, which confers the basis for reactive oxygen species (ROS) production. However, the differences in soil ROS production and their impact on carbon turnover across various redox locations within the riparian zone remain to be fully elucidated. In this study, we investigated the distribution characteristics and generation mechanism of ROS in riparian soil based on soil samples collected in a three-month field monitoring experiment, with additional incubation experiments conducted to examine the effect of hydroxyl radical (•OH) on soil organic carbon (SOC) mineralization. The obtained results demonstrated that the riverine wetland was the hotspot zone for •OH production, with the production flux of 13.05 μmol kg-1 d-1, which was significantly higher than that in floodplain (7.29 μmol kg-1 d-1) and riverbank soils (8.61 μmol kg-1 d-1). Moreover, •OH levels displayed distinct rhythmic fluctuations, with significantly higher concentrations at low water levels compared to those at high water levels, and remained essentially flat over three cycles. The statistic analysis revealed that the ROS production was highly dependent on reduced species and microbial community structure, which function as biogeochemical batteries and electron shuttles under redox fluctuations. Furthermore, the generated •OH involved in the abiotic mineralization of SOC, contributing to 13.1‒21.8 % of total CO2 efflux. Compared to particulate organic carbon (POC), mineral-associated organic carbon (MAOC) fractions of SOC were more susceptible to •OH attacks. The findings provide a novel insight to comprehensively assess the redox process on riparian carbon turnover.

Long-Term Photochemical and Microbial Alterations Lead to the Compositional Convergence of Algal and Terrestrial Dissolved Organic Matter

Lakes are expected to become more active in processing dissolved organic matter (DOM), but the fate of DOM with different origins remains poorly constrained. We conducted long-term incubation experiments (∼1 year) with sole light, sole microbial, and combined light and microbial treatments using DOM from algal and terrestrial sources (DOMa and DOMt, respectively). Fourier transform ion cyclotron resonance mass spectrometry and 16s rRNA were used to analyze the DOM molecular composition and bacterial community, respectively. We observed that DOMa and DOMt converged toward a similar composition under the combined light and microbial treatment, driven by the removal of source-specific compositions along with the production of refractory, carboxylic-rich alicyclic molecules (CRAM). For CRAM enrichment, microbial processes played a greater role for DOMa, while phototransformation was more important for DOMt. The co-occurrence patterns between DOM molecules and bacteria showed that DOM molecular composition influenced the bacterial community. More complex DOM-bacteria interactions were observed for DOMt compared to DOMa, suggesting that greater bacterial cooperation was necessary for transforming DOMt. Collectively, these findings offer new insights into the mechanisms underlying the uniformity of DOM from various sources through prolonged environmental transformations in lakes.

Overlooked Roles and Transformation of Carbon-Centered Radicals Produced from Natural Organic Matter in a Thermally Activated Persulfate System

The presence and induced secondary reactions of natural organic matter (NOM) significantly affect the remediation efficacy of in situ chemical oxidation (ISCO) systems. However, it remains unclear how this process relates to organic radicals generated from reactions between the NOM and oxidants. The study, for the first time, reported the vital roles and transformation pathways of carbon-centered radicals (CCR•) derived from NOM in activated persulfate (PS) systems. Results showed that both typical terrestrial/aquatic NOM isolates and collected NOM samples produced CCR• by scavenging activated PS and greatly enhanced the dehalogenation performance under anoxic conditions. Under oxic conditions, newly formed CCR• could be oxidized by O2 and generate organic peroxide intermediates (ROO•) to catalytically yield additional •OH without the involvement of PS. Nuclear magnetic resonance (NMR) and Fourier transform ion cyclotron resonance mass spectrometry (FT-ICR-MS) results indicated that CCR• predominantly formed from carboxyl and aliphatic structures instead of aromatics within NOM through hydrogen abstraction and decarboxylation reactions by SO4•- or •OH. Specific anoxic reactions (i.e., dehalogenation and intramolecular cross-coupling reactions) further promoted the transformation of CCR• to more unsaturated and polymerized/condensed compounds. In contrast, oxic propagation of ROO• enhanced bond breakage/ring cleavage and degradation of CCR• due to the presence of additional •OH and self-decomposition. This study provides novel insights into the role of NOM and O2 in ISCO and the development of engineered strategies for creating organic radicals capable of enhancing the remediation of specific contaminants and recovering organic carbon.

Microbially Driven Iron Cycling Facilitates Organic Carbon Accrual in Decadal Biochar-Amended Soil

Soil organic carbon (SOC) is pivotal for both agricultural activities and climate change mitigation, and biochar stands as a promising tool for bolstering SOC and curtailing soil carbon dioxide (CO2) emissions. However, the involvement of biochar in SOC dynamics and the underlying interactions among biochar, soil microbes, iron minerals, and fresh organic matter (FOM, such as plant debris) remain largely unknown, especially in agricultural soils after long-term biochar amendment. We therefore introduced FOM to soils with and without a decade-long history of biochar amendment, performed soil microcosm incubations, and evaluated carbon and iron dynamics as well as microbial properties. Biochar amendment resulted in 2-fold SOC accrual over a decade and attenuated FOM-induced CO2 emissions by approximately 11% during a 56-day incubation through diverse pathways. Notably, biochar facilitated microbially driven iron reduction and subsequent Fenton-like reactions, potentially having enhanced microbial extracellular electron transfer and the carbon use efficiency in the long run. Throughout iron cycling processes, physical protection by minerals could contribute to both microbial carbon accumulation and plant debris preservation, alongside direct adsorption and occlusion of SOC by biochar particles. Furthermore, soil slurry experiments, with sterilization and ferrous iron stimulation controls, confirmed the role of microbes in hydroxyl radical generation and biotic carbon sequestration in biochar-amended soils. Overall, our study sheds light on the intricate biotic and abiotic mechanisms governing carbon dynamics in long-term biochar-amended upland soils.

Critical Role of Mineral Fe(IV) Formation in Low Hydroxyl Radical Yields during Fe(II)-Bearing Clay Mineral Oxygenation

In subsurface environments, Fe(II)-bearing clay minerals can serve as crucial electron sources for O2 activation, leading to the sequential production of O2•-, H2O2, and •OH. However, the observed •OH yields are notably low, and the underlying mechanism remains unclear. In this study, we investigated the production of oxidants from oxygenation of reduced Fe-rich nontronite NAu-2 and Fe-poor montmorillonite SWy-3. Our results indicated that the •OH yields are dependent on mineral Fe(II) species, with edge-surface Fe(II) exhibiting significantly lower •OH yields compared to those of interior Fe(II). Evidence from in situ Raman and Mössbauer spectra and chemical probe experiments substantiated the formation of structural Fe(IV). Modeling results elucidate that the pathways of Fe(IV) and •OH formation respectively consume 85.9-97.0 and 14.1-3.0% of electrons for H2O2 decomposition during oxygenation, with the Fe(II)edge/Fe(II)total ratio varying from 10 to 90%. Consequently, these findings provide novel insights into the low •OH yields of different Fe(II)-bearing clay minerals. Since Fe(IV) can selectively degrade contaminants (e.g., phenol), the generation of mineral Fe(IV) and •OH should be taken into consideration carefully when assessing the natural attenuation of contaminants in redox-fluctuating environments.

Formation of reactive intermediates in paddy water from different temperature zones for the promotion of abiotic ammonification

The paddy field is a hot area of biogeochemical process. The paddy water has a large capacity in photo-generation of reactive intermediates (RIs) due to abundant photosensitive dissolved organic matter (DOM), which is influenced by the spatial heterogeneity of paddy soils but rarely been explored. Our work presents the first investigation of the role of soil properties on photochemistry in paddy water. Soil organic matter (SOM), determined by the temperature, was the dominant factor for the photo-generation of RIs in paddy water of main rice producing areas. The RI concentrations generated with abundant SOM from cool regions are 0.05-8.71 times higher than those for the warm regions in China. The humic-like substance and aromatic-like compounds of DOM plays an essential role in RIs generation, which is abundant in paddy soils rich in SOM from Chinese cool regions. In addition, RIs can efficiently accelerate the photo-ammonification of urea and free amino acids by 15.2 %-164 %, leading to 0.13-0.17 mmol/L/d photo-produced ammonium after fertilization, which is preferentially absorbed by rice. The findings of this study will extend our knowledge of the geochemistry of global paddy field ecosystem. The potential role of RIs in nitrogen cycle should be highlighted in the agroecosystem.

Strong Substance Exchange at Paddy Soil-Water Interface Promotes Nonphotochemical Formation of Reactive Oxygen Species in Overlying Water

Photochemically generated reactive oxygen species (ROS) are widespread on the earth's surface under sunlight irradiation. However, the nonphotochemical ROS generation in surface water (e.g., paddy overlying water) has been largely neglected. This work elucidated the drivers of nonphotochemical ROS generation and its spatial distribution in undisturbed paddy overlying water, by combining ROS imaging technology with in situ ROS monitoring. It was found that H2O2 concentrations formed in three paddy overlying waters could reach 0.03-16.9 μM, and the ROS profiles exhibited spatial heterogeneity. The O2 planar-optode indicated that redox interfaces were not always generated at the soil-water interface but also possibly in the water layer, depending on the soil properties. The formed redox interface facilitated a rapid turnover of reducing and oxidizing substances, creating an ideal environment for the generation of ROS. Additionally, the electron-donating capacities of water at soil-water interfaces increased by 4.5-8.4 times compared to that of the top water layers. Importantly, field investigation results confirmed that sustainable •OH generation through nonphotochemical pathways constituted of a significant proportion of total daily production (>50%), suggesting a comparable or even greater role than photochemical ROS generation. In summary, the nonphotochemical ROS generation process reported in this study greatly enhances the understanding of natural ROS production processes in paddy soils.

Seasonal and Spatial Fluctuations of Reactive Oxygen Species in Riparian Soils and Their Contributions on Organic Carbon Mineralization

Reactive oxygen species (ROS) are ubiquitous in the natural environment and play a pivotal role in biogeochemical processes. However, the spatiotemporal distribution and production mechanisms of ROS in riparian soil remain unknown. Herein, we performed uninterrupted monitoring to investigate the variation of ROS at different soil sites of the Weihe River riparian zone throughout the year. Fluorescence imaging and quantitative analysis clearly showed the production and spatiotemporal variation of ROS in riparian soils. The concentration of superoxide (O2•-) was 300% higher in summer and autumn compared to that in other seasons, while the highest concentrations of 539.7 and 20.12 μmol kg-1 were observed in winter for hydrogen peroxide (H2O2) and hydroxyl radicals (•OH), respectively. Spatially, ROS production in riparian soils gradually decreased along with the stream. The results of the structural equation and random forest model indicated that meteorological conditions and soil physicochemical properties were primary drivers mediating the seasonal and spatial variations in ROS production, respectively. The generated •OH significantly induced the abiotic mineralization of organic carbon, contributing to 17.5-26.4% of CO2 efflux. The obtained information highlighted riparian zones as pervasive yet previously underestimated hotspots for ROS production, which may have non-negligible implications for carbon turnover and other elemental cycles in riparian soils.

Iron Promotes the Retention of Terrigenous Dissolved Organic Matter in Subtidal Permeable Sediments

Marine permeable sediments are important sites for organic matter turnover in the coastal ocean. However, little is known about their role in trapping dissolved organic matter (DOM). Here, we examined DOM abundance and molecular compositions (9804 formulas identified) in subtidal permeable sediments along a near- to offshore gradient in the German North Sea. With the salinity increasing from 30.1 to 34.6 PSU, the DOM composition in bottom water shifts from relatively higher abundances of aromatic compounds to more highly unsaturated compounds. In the bulk sediment, DOM leached by ultrapure water (UPW) from the solid phase is 54 ± 20 times more abundant than DOM in porewater, with higher H/C ratios and a more terrigenous signature. With 0.5 M HCl, the amount of leached DOM (enriched in aromatic and oxygen-rich compounds) is doubled compared to UPW, mainly due to the dissolution of poorly crystalline Fe phases (e.g., ferrihydrite and Fe monosulfides). This suggests that poorly crystalline Fe phases promote DOM retention in permeable sediments, preferentially terrigenous, and aromatic fractions. Given the intense filtration of seawater through the permeable sediments, we posit that Fe can serve as an important intermediate storage for terrigenous organic matter and potentially accelerate organic matter burial in the coastal ocean.

Dynamic Production of Hydroxyl Radicals during the Flooding-Drainage Process of Paddy Soil: An In Situ Column Study

Frequent cycles of flooding and drainage in paddy soils lead to the reductive dissolution of iron (Fe) minerals and the reoxidation of Fe(II) species, all while generating a robust and consistent output of reactive oxygen species (ROS). In this study, we present a comprehensive assessment of the temporal and spatial variations in Fe species and ROS during the flooding-drainage process in a representative paddy soil. Our laboratory column experiments showed that a decrease in dissolved O2 concentration led to rapid Fe reduction below the water-soil interface, and aqueous Fe(II) was transformed into solid Fe(II) phases over an extended flooding time. As a result, the •OH production capacity of liquid phases was reduced while that of solid phases improved. The •OH production capacity of solid phases increased from 227-271 μmol kg-1 (within 1-11 cm depth) to 500-577 to 499-902 μmol kg-1 after 50 day, 3 month, and 1 year incubation, respectively. During drainage, dynamic •OH production was triggered by O2 consumption and Fe(II) oxidation. ROS-trapping film and in situ capture revealed that the soil surface was the active zone for intense H2O2 and •OH production, while limited ROS production was observed in the deeper soil layers (>5 cm) due to the limited oxygen penetration. These findings provide more insights into the complex interplay between dynamic Fe cycling and ROS production in the redox transition zones of paddy fields.

Metapangenomic investigation provides insight into niche differentiation of methanogenic populations from the subsurface serpentinizing environment, Samail Ophiolite, Oman

Serpentinization reactions produce highly reduced waters that have hyperalkaline pH and that can have high concentrations of H₂ and CH₄. Putatively autotrophic methanogenic archaea have been identified in the subsurface waters of the Samail Ophiolite, Sultanate of Oman, though the strategies to overcome hyperalkaline pH and dissolved inorganic carbon limitation remain to be fully understood. Here, we recovered metagenome assembled genomes (MAGs) and applied a metapangenomic approach to three different Methanobacterium populations to assess habitat-specific functional gene distribution. A Type I population was identified in the fluids with neutral pH, while a Type II and "Mixed" population were identified in the most hyperalkaline fluids (pH 11.63). The core genome of all Methanobacterium populations highlighted potential DNA scavenging techniques to overcome phosphate or nitrogen limitation induced by environmental conditions. With particular emphasis on the Mixed and Type II population found in the most hyperalkaline fluids, the accessory genomes unique to each population reflected adaptation mechanisms suggesting lifestyles that minimize niche overlap. In addition to previously reported metabolic capability to utilize formate as an electron donor and generate intracellular CO₂, the Type II population possessed genes relevant to defense against antimicrobials and assimilating potential osmoprotectants to provide cellular stability. The accessory genome of the Mixed population was enriched in genes for multiple glycosyltransferases suggesting reduced energetic costs by adhering to mineral surfaces or to other microorganisms, and fostering a non-motile lifestyle. These results highlight the niche differentiation of distinct Methanobacterium populations to circumvent the challenges of serpentinization impacted fluids through coexistence strategies, supporting our ability to understand controls on methanogenic lifestyles and adaptations within the serpentinizing subsurface fluids of the Samail Ophiolite.