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For: Wang X, Ramat A, Simonelig M, Liu MF. Emerging roles and functional mechanisms of PIWI-interacting RNAs. Nat Rev Mol Cell Biol 2023;24:123-141. [PMID: 36104626 DOI: 10.1038/s41580-022-00528-0] [Citation(s) in RCA: 125] [Impact Index Per Article: 62.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 08/01/2022] [Indexed: 02/02/2023]
Number Cited by Other Article(s)
1
Wang M, Niu Y, Liu Q, Yang P, Wu M, Wu R, Shi B, Chen J, Wang J, Du Z, Pang Y, Bao L, Niu Y, Zhang R. Carbon black induced pulmonary fibrosis through piR-713551/PIWIL4 targeting THBS2 signal pathway. J Environ Sci (China) 2025;155:409-422. [PMID: 40246476 DOI: 10.1016/j.jes.2024.05.017] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/12/2024] [Revised: 05/10/2024] [Accepted: 05/10/2024] [Indexed: 04/19/2025]
2
Bai H, Meng F, Ke K, Fang L, Xu W, Huang H, Liang X, Li W, Zeng F, Chen C. The significance of small noncoding RNAs in the pathogenesis of cardiovascular diseases. Genes Dis 2025;12:101342. [PMID: 40247912 PMCID: PMC12005926 DOI: 10.1016/j.gendis.2024.101342] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/06/2023] [Revised: 04/09/2024] [Accepted: 04/23/2024] [Indexed: 04/19/2025]  Open
3
Landon B, Subasinghe K, Sumien N, Phillips N. miRNA and piRNA differential expression profiles in Alzheimer's disease: A potential source of pathology and tool for diagnosis. Exp Gerontol 2025;204:112745. [PMID: 40179995 DOI: 10.1016/j.exger.2025.112745] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/25/2025] [Revised: 03/25/2025] [Accepted: 03/31/2025] [Indexed: 04/05/2025]
4
Kawaguchi S, Isshiki W, Kai T. Factories without walls: The molecular architecture and functions of non-membrane organelles in small RNA-guided genome protection. Biochim Biophys Acta Gen Subj 2025;1869:130811. [PMID: 40319768 DOI: 10.1016/j.bbagen.2025.130811] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/15/2025] [Revised: 04/10/2025] [Accepted: 04/16/2025] [Indexed: 05/07/2025]
5
Ye Y, Wu F, Li B, Ma H, Mai L, Peng Y, Feng X, Tan X, Fu M, Tan Y, Lan T, Wang R, Ren S, Li J, Chang S, Xie S. Cancer-associated fibroblasts-derived exosomal piR-35462 promotes the progression of oral squamous cell carcinoma via FTO/Twist1 pathway. BMC Oral Health 2025;25:840. [PMID: 40437442 PMCID: PMC12121191 DOI: 10.1186/s12903-025-06082-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/22/2024] [Accepted: 04/29/2025] [Indexed: 06/01/2025]  Open
6
Wang R, Li F, Lin Y, Lu Z, Luo W, Xu Z, Zhu Z, Lu Y, Mao X, Li Y, Shen Z, Lu H, Chen Y, Xia L, Wang M, Ding L, Li G. piR-RCC Suppresses Renal Cell Carcinoma Progression by Facilitating YBX-1 Cytoplasm Localization. ADVANCED SCIENCE (WEINHEIM, BADEN-WURTTEMBERG, GERMANY) 2025:e14398. [PMID: 40411401 DOI: 10.1002/advs.202414398] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/05/2024] [Revised: 04/16/2025] [Indexed: 05/26/2025]
7
Wei H, Hou J, Liu Y, Shaytan AK, Liu B, Wu H. iPiDA-LGE: a local and global graph ensemble learning framework for identifying piRNA-disease associations. BMC Biol 2025;23:119. [PMID: 40346532 PMCID: PMC12065364 DOI: 10.1186/s12915-025-02221-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/05/2024] [Accepted: 04/23/2025] [Indexed: 05/11/2025]  Open
8
Chen K, Ye L, Yu Y, Guo P, Tan A. Sex-biased fertility degeneration induced by depletion of an auxiliary piRNA-pathway factor Qin in Bombyx mori. INSECT BIOCHEMISTRY AND MOLECULAR BIOLOGY 2025;181:104319. [PMID: 40334926 DOI: 10.1016/j.ibmb.2025.104319] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/10/2025] [Revised: 05/02/2025] [Accepted: 05/02/2025] [Indexed: 05/09/2025]
9
Zhu C, Si X, Hou X, Xu P, Gao J, Tang Y, Weng C, Xu M, Yan Q, Jin Q, Cheng J, Ruan K, Zhou Y, Shan G, Xu D, Chen X, Xiang S, Huang X, Feng X, Guang S. piRNA gene density and SUMOylation organize piRNA transcriptional condensate formation. Nat Struct Mol Biol 2025:10.1038/s41594-025-01533-5. [PMID: 40316696 DOI: 10.1038/s41594-025-01533-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/05/2023] [Accepted: 03/12/2025] [Indexed: 05/04/2025]
10
Bespalova AV, Kulikova DA, Zelentsova ES, Rezvykh AP, Guseva IO, Dorador AP, Evgen’ev MB, Funikov SY. Paramutation-Like Behavior of Genic piRNA-Producing Loci in Drosophila virilis. Int J Mol Sci 2025;26:4243. [PMID: 40362480 PMCID: PMC12072073 DOI: 10.3390/ijms26094243] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/26/2025] [Revised: 04/24/2025] [Accepted: 04/28/2025] [Indexed: 05/15/2025]  Open
11
Stefanov BA, Nowacki M. Functions and mechanisms of eukaryotic RNA-guided programmed DNA elimination. Biochem Soc Trans 2025;53:BST20253006. [PMID: 40305257 DOI: 10.1042/bst20253006] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/06/2025] [Accepted: 04/08/2025] [Indexed: 05/02/2025]
12
Mohamed FS, Jalal D, Fadel YM, El-Mashtoly SF, Khaled WZ, Sayed AA, Ghazy MA. Characterization and comparative profiling of piRNAs in serum biopsies of pediatric Wilms tumor patients. Cancer Cell Int 2025;25:163. [PMID: 40287690 PMCID: PMC12034122 DOI: 10.1186/s12935-025-03780-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/15/2025] [Accepted: 04/03/2025] [Indexed: 04/29/2025]  Open
13
Li B, Li T, Wang D, Yang Y, Tan P, Wang Y, Yang YG, Jia S, Au KF. Zygotic activation of transposable elements during zebrafish early embryogenesis. Nat Commun 2025;16:3692. [PMID: 40246845 PMCID: PMC12006353 DOI: 10.1038/s41467-025-58863-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/26/2024] [Accepted: 03/31/2025] [Indexed: 04/19/2025]  Open
14
Blumenstiel JP, Kingan SB, Garrigan D, Hill T, Vedanayagam J. Nested likelihood-ratio testing of the nonsynonymous:synonymous ratio suggests greater adaptation in the piRNA machinery of Drosophila melanogaster compared with Drosophila ananassae and Drosophila willistoni, two species with higher repeat content. G3 (BETHESDA, MD.) 2025;15:jkaf017. [PMID: 39982380 PMCID: PMC12005163 DOI: 10.1093/g3journal/jkaf017] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/02/2024] [Accepted: 01/19/2025] [Indexed: 02/22/2025]
15
Li Z, Xu Q, Zhang Y, Zhong J, Zhang T, Xue J, Liu S, Gao H, Zhang ZZZ, Wu J, Shen EZ. Mechanistic insights into RNA cleavage by human Argonaute2-siRNA complex. Cell Res 2025:10.1038/s41422-025-01114-7. [PMID: 40240484 DOI: 10.1038/s41422-025-01114-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/29/2025] [Accepted: 03/14/2025] [Indexed: 04/18/2025]  Open
16
Ahrend F, Konstantinidou P, Loubalova Z, Wang Y, Lorenzi H, Meister G, Haase AD. Protocol for assembling, prioritizing, and characterizing piRNA clusters using the piRNA Cluster Builder. STAR Protoc 2025;6:103759. [PMID: 40220304 PMCID: PMC12023778 DOI: 10.1016/j.xpro.2025.103759] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/05/2024] [Revised: 02/19/2025] [Accepted: 03/19/2025] [Indexed: 04/14/2025]  Open
17
Lebedev E, Smutin D, Timkin P, Kotelnikov D, Taldaev A, Panushev N, Adonin L. The eusocial non-code: Unveiling the impact of noncoding RNAs on Hymenoptera eusocial evolution. Noncoding RNA Res 2025;11:48-59. [PMID: 39736856 PMCID: PMC11683303 DOI: 10.1016/j.ncrna.2024.10.007] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/01/2024] [Revised: 10/14/2024] [Accepted: 10/27/2024] [Indexed: 01/01/2025]  Open
18
Shivam P, Ball D, Cooley A, Osi I, Rayford KJ, Gonzalez SB, Edwards AD, McIntosh AR, Devaughn J, Pugh-Brown JP, Misra S, Kirabo A, Ramesh A, Lindsey ML, Sakwe AM, Gaye A, Hinton A, Martin PM, Nde PN. Regulatory roles of PIWI-interacting RNAs in cardiovascular disease. Am J Physiol Heart Circ Physiol 2025;328:H991-H1004. [PMID: 40048207 PMCID: PMC12122055 DOI: 10.1152/ajpheart.00833.2024] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 12/02/2024] [Revised: 12/27/2024] [Accepted: 03/03/2025] [Indexed: 04/09/2025]
19
Hashemi M, Fard AA, Pakshad B, Asheghabadi PS, Hosseinkhani A, Hosseini AS, Moradi P, Mohammadbeygi Niye M, Najafi G, Farahzadi M, Khoushab S, Taheriazam A, Farahani N, Mohammadi M, Daneshi S, Nabavi N, Entezari M. Non-coding RNAs and regulation of the PI3K signaling pathway in lung cancer: Recent insights and potential clinical applications. Noncoding RNA Res 2025;11:1-21. [PMID: 39720352 PMCID: PMC11665378 DOI: 10.1016/j.ncrna.2024.11.006] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/21/2024] [Revised: 11/11/2024] [Accepted: 11/21/2024] [Indexed: 12/26/2024]  Open
20
Li L, Tang X, Guo X, Rao D, Zeng L, Xue J, Liu S, Tu S, Shen EZ. Spatiotemporal single-cell architecture of gene expression in the Caenorhabditis elegans germ cells. Cell Discov 2025;11:26. [PMID: 40097379 PMCID: PMC11914268 DOI: 10.1038/s41421-025-00790-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/15/2024] [Accepted: 02/28/2025] [Indexed: 03/19/2025]  Open
21
Chennakesavan K, Haorah J, Samikkannu T. piRNA/PIWI pathways and epigenetic crosstalk in human diseases: Molecular insights into HIV-1 infection and drugs of abuse. MOLECULAR THERAPY. NUCLEIC ACIDS 2025;36:102473. [PMID: 40083650 PMCID: PMC11905891 DOI: 10.1016/j.omtn.2025.102473] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Indexed: 03/16/2025]
22
Li Z, Xu Q, Zhong J, Zhang Y, Zhang T, Ying X, Lu X, Li X, Wan L, Xue J, Huang J, Zhen Y, Zhang Z, Wu J, Shen EZ. Structural insights into RNA cleavage by PIWI Argonaute. Nature 2025;639:250-259. [PMID: 39814893 DOI: 10.1038/s41586-024-08438-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/23/2024] [Accepted: 11/21/2024] [Indexed: 01/18/2025]
23
Herbert A. Flipons enable genomes to learn by intermediating the exchange of energy for information. J R Soc Interface 2025;22:20250049. [PMID: 40134357 PMCID: PMC11937930 DOI: 10.1098/rsif.2025.0049] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/14/2025] [Revised: 02/18/2025] [Accepted: 02/26/2025] [Indexed: 03/27/2025]  Open
24
Huang XY, Chen SX, Wang ZY, Lu YS, Liu CT, Chen SZ. PIWI-interacting RNA biomarkers in gastrointestinal disease. Clin Chim Acta 2025;569:120182. [PMID: 39920958 DOI: 10.1016/j.cca.2025.120182] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/26/2024] [Revised: 01/31/2025] [Accepted: 02/02/2025] [Indexed: 02/10/2025]
25
Zhou JH, Cai C, Zhou XF, Xu D. Progress in research of non-coding RNAs in colorectal cancer and their application in early diagnosis. Shijie Huaren Xiaohua Zazhi 2025;33:96-105. [DOI: 10.11569/wcjd.v33.i2.96] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 12/26/2024] [Revised: 02/03/2025] [Accepted: 02/20/2025] [Indexed: 02/28/2025]  Open
26
Gan M, Wang X, Ma J, Chen L, Wang Y, Shen L, Zhu L. Small RNA data sets of mouse testes and ovaries before and after sexual maturity. Sci Data 2025;12:354. [PMID: 40016227 PMCID: PMC11868417 DOI: 10.1038/s41597-025-04555-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/10/2024] [Accepted: 01/29/2025] [Indexed: 03/01/2025]  Open
27
Xu H, Guo J, Huang Y, Zhang M, Wang Y, Xia L, Cheng X, Meng T, Hao R, Wei X, Li C, Zhang P, Xu Y. Insights into the role of hnRNPK in spermatogenesis via the piRNA pathway. Sci Rep 2025;15:6438. [PMID: 39987352 PMCID: PMC11846892 DOI: 10.1038/s41598-025-91081-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/23/2024] [Accepted: 02/18/2025] [Indexed: 02/24/2025]  Open
28
Cai J, Yan Z, Zhong Y, Li Y, Huang J, Hu H, Li Y, Fang H, Wu S. Small non-coding RNA profiling in patients with non-muscle invasive bladder cancer. BMC Cancer 2025;25:319. [PMID: 39984879 PMCID: PMC11846270 DOI: 10.1186/s12885-025-13672-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/04/2024] [Accepted: 02/06/2025] [Indexed: 02/23/2025]  Open
29
Pan D, Liu MF. tRNA intron-derived small regulatory RNAs fine-tune gene expression under oxidative stress. Mol Cell 2025;85:669-671. [PMID: 39983669 DOI: 10.1016/j.molcel.2025.01.026] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/24/2025] [Revised: 01/24/2025] [Accepted: 01/24/2025] [Indexed: 02/23/2025]
30
Wang X, Du Q, Li W, Zou Z, Wang C, Zhou Y, Hu Z, Gu Y, Li F. Functional Investigation of a Novel PIWIL4 Mutation in Nonobstructive Azoospermia During the First Wave of Spermatogenesis. Biomolecules 2025;15:297. [PMID: 40001600 PMCID: PMC11852923 DOI: 10.3390/biom15020297] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/19/2025] [Revised: 02/08/2025] [Accepted: 02/14/2025] [Indexed: 02/27/2025]  Open
31
Zhang T, Chen L, Zhu H, Wong G. Mammalian piRNA target prediction using a hierarchical attention model. BMC Bioinformatics 2025;26:50. [PMID: 39934678 PMCID: PMC11817350 DOI: 10.1186/s12859-025-06068-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/05/2024] [Accepted: 01/29/2025] [Indexed: 02/13/2025]  Open
32
Verdonckt TW, Swevers L, Santos D. A model that integrates the different piRNA biogenesis pathways based on studies in silkworm BmN4 cells. CURRENT RESEARCH IN INSECT SCIENCE 2025;7:100108. [PMID: 40083348 PMCID: PMC11904557 DOI: 10.1016/j.cris.2025.100108] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 02/04/2024] [Revised: 02/04/2025] [Accepted: 02/05/2025] [Indexed: 03/16/2025]
33
Claro-Linares F, Rojas-Ríos P. PIWI proteins and piRNAs: key regulators of stem cell biology. Front Cell Dev Biol 2025;13:1540313. [PMID: 39981094 PMCID: PMC11839606 DOI: 10.3389/fcell.2025.1540313] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/05/2024] [Accepted: 01/20/2025] [Indexed: 02/22/2025]  Open
34
Zhang Y, Chen A, Lu S, Liu D, Xuan X, Lei X, Zhong M, Gao F. Noncoding RNA profiling in omentum adipose tissue from obese patients and the identification of novel metabolic biomarkers. Front Genet 2025;16:1533637. [PMID: 39981261 PMCID: PMC11839770 DOI: 10.3389/fgene.2025.1533637] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/03/2024] [Accepted: 01/15/2025] [Indexed: 02/22/2025]  Open
35
Timofeeva AV, Fedorov IS, Tarasova AM, Sukhova YV, Kolod’ko VG, Ivanets TY, Sukhikh GT. Universal First-Trimester Screening Biomarkers for Diagnosis of Preeclampsia and Placenta Accreta Spectrum. Biomolecules 2025;15:228. [PMID: 40001531 PMCID: PMC11852485 DOI: 10.3390/biom15020228] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/14/2024] [Revised: 01/31/2025] [Accepted: 02/01/2025] [Indexed: 02/27/2025]  Open
36
van der Kuyl AC. Mutation Rate Variation and Other Challenges in 2-LTR Dating of Primate Endogenous Retrovirus Integrations. J Mol Evol 2025;93:62-82. [PMID: 39715846 DOI: 10.1007/s00239-024-10225-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/25/2024] [Accepted: 12/07/2024] [Indexed: 12/25/2024]
37
Han Y, Pu Q, Fan T, Wei T, Xu Y, Zhao L, Liu S. Long non-coding RNAs as promising targets for controlling disease vector mosquitoes. INSECT SCIENCE 2025;32:24-41. [PMID: 38783627 DOI: 10.1111/1744-7917.13383] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/09/2024] [Revised: 04/10/2024] [Accepted: 04/16/2024] [Indexed: 05/25/2024]
38
Chen M, Duan S, Chai G, Zhan L, Peng L, Sun W, Xu E. Hypoxic Postconditioning Offers Neuroprotection Against Transient Cerebral Ischemia via Down-Regulation of rno_piR_011022. CNS Neurosci Ther 2025;31:e70295. [PMID: 39996480 PMCID: PMC11851155 DOI: 10.1111/cns.70295] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/27/2024] [Revised: 12/17/2024] [Accepted: 01/12/2025] [Indexed: 02/26/2025]  Open
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Emerson JI, Shi W, Paredes-Larios J, Walker WG, Hutton JE, Cristea IM, Marzluff WF, Conlon FL. X-Chromosome-Linked miRNAs Regulate Sex Differences in Cardiac Physiology. Circ Res 2025;136:258-275. [PMID: 39772608 PMCID: PMC11781965 DOI: 10.1161/circresaha.124.325447] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 08/28/2024] [Revised: 12/04/2024] [Accepted: 12/13/2024] [Indexed: 01/11/2025]
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Almeida MV, Blumer M, Yuan CU, Sierra P, Price JL, Quah FX, Friman A, Dallaire A, Vernaz G, Putman ALK, Smith AM, Joyce DA, Butter F, Haase AD, Durbin R, Santos ME, Miska EA. Dynamic co-evolution of transposable elements and the piRNA pathway in African cichlid fishes. Genome Biol 2025;26:14. [PMID: 39844208 PMCID: PMC11753138 DOI: 10.1186/s13059-025-03475-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/15/2024] [Accepted: 01/06/2025] [Indexed: 01/24/2025]  Open
41
Vasu S, Johnson V, M A, Reddy KA, Sukumar UK. Circulating Extracellular Vesicles as Promising Biomarkers for Precession Diagnostics: A Perspective on Lung Cancer. ACS Biomater Sci Eng 2025;11:95-134. [PMID: 39636879 DOI: 10.1021/acsbiomaterials.4c01323] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/07/2024]
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Aranguren S, Cole H, Dargan LJ, Sarlo M, Choi S, Satapathy I, de Vasconcellos JF. Recent advances in the regulatory and non-coding RNA biology of osteogenic differentiation: biological functions and significance for bone healing. Front Cell Dev Biol 2025;12:1483843. [PMID: 39834390 PMCID: PMC11743950 DOI: 10.3389/fcell.2024.1483843] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/20/2024] [Accepted: 12/04/2024] [Indexed: 01/22/2025]  Open
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Blumenstiel JP. From the cauldron of conflict: Endogenous gene regulation by piRNA and other modes of adaptation enabled by selfish transposable elements. Semin Cell Dev Biol 2025;164:1-12. [PMID: 38823219 DOI: 10.1016/j.semcdb.2024.05.001] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/10/2023] [Revised: 04/28/2024] [Accepted: 05/06/2024] [Indexed: 06/03/2024]
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Wittmann J. Overview of the Different Classes of Small RNAs During B-Cell Development. Methods Mol Biol 2025;2883:1-29. [PMID: 39702702 DOI: 10.1007/978-1-0716-4290-0_1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2024]
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Suyama R, Kai T. piRNA processing within non-membrane structures is governed by constituent proteins and their functional motifs. FEBS J 2024. [PMID: 39739617 DOI: 10.1111/febs.17360] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/15/2024] [Revised: 08/23/2024] [Accepted: 12/05/2024] [Indexed: 01/02/2025]
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Ariura M, Solberg T, Ishizu H, Takahashi H, Carninci P, Siomi H, Iwasaki YW. Drosophila Piwi distinguishes transposons from mRNAs by piRNA complementarity and abundance. Cell Rep 2024;43:115020. [PMID: 39636727 DOI: 10.1016/j.celrep.2024.115020] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/01/2024] [Revised: 10/04/2024] [Accepted: 11/12/2024] [Indexed: 12/07/2024]  Open
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Patel MZ, Jiang Y, Kakumani PK. Somatic piRNA and PIWI-mediated post-transcriptional gene regulation in stem cells and disease. Front Cell Dev Biol 2024;12:1495035. [PMID: 39717847 PMCID: PMC11663942 DOI: 10.3389/fcell.2024.1495035] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/11/2024] [Accepted: 11/25/2024] [Indexed: 12/25/2024]  Open
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Lv L, Yuan K, Li J, Lu J, Zhao Q, Wang H, Chen Q, Dong X, Sheng S, Liu M, Shi Y, Jiang H, Dong Z. PiRNA CFAPIR inhibits cardiac fibrosis by regulating the muscleblind-like protein MBNL2. Biochim Biophys Acta Mol Basis Dis 2024;1870:167456. [PMID: 39122223 DOI: 10.1016/j.bbadis.2024.167456] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/09/2024] [Revised: 08/01/2024] [Accepted: 08/05/2024] [Indexed: 08/12/2024]
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Li J, Wang X. Functional roles of conserved lncRNAs and circRNAs in eukaryotes. Noncoding RNA Res 2024;9:1271-1279. [PMID: 39036601 PMCID: PMC11260338 DOI: 10.1016/j.ncrna.2024.06.014] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/20/2023] [Revised: 06/14/2024] [Accepted: 06/24/2024] [Indexed: 07/23/2024]  Open
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Guo C, Wang X, Ren H. Databases and computational methods for the identification of piRNA-related molecules: A survey. Comput Struct Biotechnol J 2024;23:813-833. [PMID: 38328006 PMCID: PMC10847878 DOI: 10.1016/j.csbj.2024.01.011] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/11/2023] [Revised: 12/31/2023] [Accepted: 01/15/2024] [Indexed: 02/09/2024]  Open
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