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Urban MC. Climate change extinctions. Science 2024; 386:1123-1128. [PMID: 39636977 DOI: 10.1126/science.adp4461] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/26/2024] [Accepted: 10/28/2024] [Indexed: 12/07/2024]
Abstract
Climate change is expected to cause irreversible changes to biodiversity, but predicting those risks remains uncertain. I synthesized 485 studies and more than 5 million projections to produce a quantitative global assessment of climate change extinctions. With increased certainty, this meta-analysis suggests that extinctions will accelerate rapidly if global temperatures exceed 1.5°C. The highest-emission scenario would threaten approximately one-third of species, globally. Amphibians; species from mountain, island, and freshwater ecosystems; and species inhabiting South America, Australia, and New Zealand face the greatest threats. In line with predictions, climate change has contributed to an increasing proportion of observed global extinctions since 1970. Besides limiting greenhouse gases, pinpointing which species to protect first will be critical for preserving biodiversity until anthropogenic climate change is halted and reversed.
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Affiliation(s)
- Mark C Urban
- Department of Ecology and Evolutionary Biology, University of Connecticut, Storrs, CT, USA
- Center of Biological Risk, University of Connecticut, Storrs, CT, USA
- School of Biological Sciences, University of Aberdeen, Aberdeen, UK
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2
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Twumasi-Ankrah MJ, Zhan J, Asamoah EF. Mapping ecoregional vulnerability to climate change for Africa. THE SCIENCE OF THE TOTAL ENVIRONMENT 2024; 953:176219. [PMID: 39265675 DOI: 10.1016/j.scitotenv.2024.176219] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/04/2024] [Revised: 08/16/2024] [Accepted: 09/10/2024] [Indexed: 09/14/2024]
Abstract
African ecosystems are expected to be significantly affected by climate change, making it crucial to understand these changes for effective management. We provide a framework and application to assess ecoregional vulnerability to climate change, considering environmental exposure, sensitivity, and adaptive capacity. We assessed environmental exposure using projections for consecutive dry days, precipitation, and temperature changes. Sensitivity was determined based on forest fragmentation and grassland degradation. Adaptive capacity was represented by protected areas network and biodiversity intactness. These factors were combined to create overall vulnerability index and specific categories to guide management decisions. Under the SSP5 8.5 scenario, 16 % of ecoregions will be highly impacted by 2050, with vulnerable areas emerging in Montane forest-grassland and flooded savanna. Impacted ecoregions are disproportionately biodiverse. By intersecting the likely climate impacts and adaptive capacity, we highlight where conservation actions are needed to enhance the resilience of ecoregions to climate change.
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Affiliation(s)
- Michael Jordan Twumasi-Ankrah
- State Key Laboratory of Water Environment Simulation, School of Environment, Beijing Normal University, Beijing 100875, China
| | - Jinyan Zhan
- State Key Laboratory of Water Environment Simulation, School of Environment, Beijing Normal University, Beijing 100875, China.
| | - Ernest Frimpong Asamoah
- School of Natural Sciences, Macquarie University, North Ryde, 2109 Sydney, NSW, Australia; School of Biology and Environmental Science, Queensland University of Technology, Brisbane, QLD, Australia
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3
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Muniz AC, de Lemos-Filho JP, Lovato MB. Non-adaptedness and vulnerability to climate change threaten Plathymenia trees (Fabaceae) from the Cerrado and Atlantic Forest. Sci Rep 2024; 14:25611. [PMID: 39465275 PMCID: PMC11514217 DOI: 10.1038/s41598-024-75664-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/17/2023] [Accepted: 10/07/2024] [Indexed: 10/29/2024] Open
Abstract
Climate change is increasing species extinction risk. The ability of a species to cope with climate change can be quantified by projecting distribution models and by estimating the risk of non-adaptedness using genomic data. The Cerrado and the Atlantic Forest in Tropical South America are increasingly threatened by habitat loss and anthropogenic climate change. This work aims to evaluate the ecological and genomic vulnerability of Plathymenia taxa and its lineages, P. reticulata, a Cerrado species, and P. foliolosa, an Atlantic Forest species, to determine their current and future habitat suitability and the mismatch between current local adaptation with the expected climate changes. The species distribution models predicted a high range loss for the Plathymenia lineages. The genotype-environment association analyses showed that the Plathymenia lineages have populations adapted to different precipitation and temperature seasonality regimes. The genomic offset analyses predict a mismatch between local adaptations and future climate for the Plathymenia indicating a high risk of non-adaptedness, especially in the pessimistic scenario. Our results show an elevated extinction risk of the species due to climate change. We suggest reevaluating the extinction risk and management of the Plathymenia species separately based on their differences in vulnerability to climate change.
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Affiliation(s)
- André Carneiro Muniz
- Departamento de Genética, Ecologia e Evolução, Universidade Federal de Minas Gerais, CP 486, Belo Horizonte, MG, 31270-901, Brazil.
| | - José Pires de Lemos-Filho
- Departamento de Botânica, Universidade Federal de Minas Gerais, Belo Horizonte, MG, 31270-901, Brazil
| | - Maria Bernadete Lovato
- Departamento de Genética, Ecologia e Evolução, Universidade Federal de Minas Gerais, CP 486, Belo Horizonte, MG, 31270-901, Brazil.
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4
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Lettrich MD, Asaro MJ, Borggaard DL, Dick DM, Griffis RB, Litz JA, Orphanides CD, Palka DL, Soldevilla MS, Balmer B, Chavez S, Cholewiak D, Claridge D, Ewing RY, Fazioli KL, Fertl D, Fougeres EM, Gannon D, Garrison L, Gilbert J, Gorgone A, Hohn A, Horstman S, Josephson B, Kenney RD, Kiszka JJ, Maze-Foley K, McFee W, Mullin KD, Murray K, Pendleton DE, Robbins J, Roberts JJ, Rodriguez- Ferrer G, Ronje EI, Rosel PE, Speakman T, Stanistreet JE, Stevens T, Stolen M, Moore RT, Vollmer NL, Wells R, Whitehead HR, Whitt A. Vulnerability to climate change of United States marine mammal stocks in the western North Atlantic, Gulf of Mexico, and Caribbean. PLoS One 2023; 18:e0290643. [PMID: 37729181 PMCID: PMC10511136 DOI: 10.1371/journal.pone.0290643] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/28/2023] [Accepted: 08/11/2023] [Indexed: 09/22/2023] Open
Abstract
Climate change and climate variability are affecting marine mammal species and these impacts are projected to continue in the coming decades. Vulnerability assessments provide a framework for evaluating climate impacts over a broad range of species using currently available information. We conducted a trait-based climate vulnerability assessment using expert elicitation for 108 marine mammal stocks and stock groups in the western North Atlantic, Gulf of Mexico, and Caribbean Sea. Our approach combined the exposure (projected change in environmental conditions) and sensitivity (ability to tolerate and adapt to changing conditions) of marine mammal stocks to estimate vulnerability to climate change, and categorize stocks with a vulnerability index. The climate vulnerability score was very high for 44% (n = 47) of these stocks, high for 29% (n = 31), moderate for 20% (n = 22), and low for 7% (n = 8). The majority of stocks (n = 78; 72%) scored very high exposure, whereas 24% (n = 26) scored high, and 4% (n = 4) scored moderate. The sensitivity score was very high for 33% (n = 36) of these stocks, high for 18% (n = 19), moderate for 34% (n = 37), and low for 15% (n = 16). Vulnerability results were summarized for stocks in five taxonomic groups: pinnipeds (n = 4; 25% high, 75% moderate), mysticetes (n = 7; 29% very high, 57% high, 14% moderate), ziphiids (n = 8; 13% very high, 50% high, 38% moderate), delphinids (n = 84; 52% very high, 23% high, 15% moderate, 10% low), and other odontocetes (n = 5; 60% high, 40% moderate). Factors including temperature, ocean pH, and dissolved oxygen were the primary drivers of high climate exposure, with effects mediated through prey and habitat parameters. We quantified sources of uncertainty by bootstrapping vulnerability scores, conducting leave-one-out analyses of individual attributes and individual scorers, and through scoring data quality for each attribute. These results provide information for researchers, managers, and the public on marine mammal responses to climate change to enhance the development of more effective marine mammal management, restoration, and conservation activities that address current and future environmental variation and biological responses due to climate change.
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Affiliation(s)
- Matthew D. Lettrich
- ECS Under Contract for Office of Science and Technology, NOAA Fisheries, Silver Spring, Maryland, United States of America
| | - Michael J. Asaro
- Northeast Fisheries Science Center, NOAA Fisheries, Woods Hole, Massachusetts, United States of America
| | - Diane L. Borggaard
- Greater Atlantic Regional Fisheries Office, NOAA Fisheries, Gloucester, Massachusetts, United States of America
| | - Dorothy M. Dick
- Office of Protected Resources, NOAA Fisheries, Silver Spring, Maryland, United States of America
| | - Roger B. Griffis
- Office of Science and Technology, NOAA Fisheries, Silver Spring, Maryland, United States of America
| | - Jenny A. Litz
- Marine Mammal and Turtle Division, Southeast Fisheries Science Center, NOAA Fisheries, Miami, Florida, United States of America
| | - Christopher D. Orphanides
- Northeast Fisheries Science Center, NOAA Fisheries, Woods Hole, Massachusetts, United States of America
| | - Debra L. Palka
- Northeast Fisheries Science Center, NOAA Fisheries, Woods Hole, Massachusetts, United States of America
| | - Melissa S. Soldevilla
- Marine Mammal and Turtle Division, Southeast Fisheries Science Center, NOAA Fisheries, Miami, Florida, United States of America
| | - Brian Balmer
- Dolphin Relief and Research, Clancy, Montana, United States of America
| | - Samuel Chavez
- Integrated Statistics, Woods Hole, Massachusetts, United States of America
| | - Danielle Cholewiak
- Northeast Fisheries Science Center, NOAA Fisheries, Woods Hole, Massachusetts, United States of America
| | - Diane Claridge
- Bahamas Marine Mammal Research Organisation, Marsh Harbour, Abaco, Bahamas
| | - Ruth Y. Ewing
- Marine Mammal and Turtle Division, Southeast Fisheries Science Center, NOAA Fisheries, Miami, Florida, United States of America
| | - Kristi L. Fazioli
- Environmental Institute of Houston, University of Houston ‐ Clear Lake, Houston, Texas, United States of America
| | - Dagmar Fertl
- Ziphius EcoServices, Magnolia, Texas, United States of America
| | - Erin M. Fougeres
- Southeast Regional Office, NOAA Fisheries, Saint Petersburg, Florida, United States of America
| | - Damon Gannon
- University of Georgia Marine Institute, Sapelo Island, Georgia, United States of America
| | - Lance Garrison
- Marine Mammal and Turtle Division, Southeast Fisheries Science Center, NOAA Fisheries, Miami, Florida, United States of America
| | - James Gilbert
- University of Maine, Orono, Maine, United States of America
| | - Annie Gorgone
- CIMAS, University of Miami, Under Contract for NOAA Fisheries Southeast Fisheries Science Center, Beaufort, North Carolina, United States of America
| | - Aleta Hohn
- Marine Mammal and Turtle Division, Southeast Fisheries Science Center, NOAA Fisheries, Beaufort, North Carolina, United States of America
| | - Stacey Horstman
- Southeast Regional Office, NOAA Fisheries, Saint Petersburg, Florida, United States of America
| | - Beth Josephson
- Integrated Statistics, Woods Hole, Massachusetts, United States of America
| | - Robert D. Kenney
- Graduate School of Oceanography, University of Rhode Island, Narragansett, Rhode Island, United States of America
| | - Jeremy J. Kiszka
- Department of Biological Sciences, Institute of Environment, Florida International University, Miami, Florida, United States of America
| | - Katherine Maze-Foley
- CIMAS, University of Miami, Under Contract for Marine Mammal and Turtle Division, Southeast Fisheries Science Center, NOAA Fisheries, Miami, Florida, United States of America
| | - Wayne McFee
- National Centers for Coastal Ocean Science, National Ocean Service, National Oceanic and Atmospheric Administration, Charleston, South Carolina, United States of America
| | - Keith D. Mullin
- Marine Mammal and Turtle Division, Southeast Fisheries Science Center, NOAA Fisheries, Pascagoula, Mississippi, United States of America
| | - Kimberly Murray
- Northeast Fisheries Science Center, NOAA Fisheries, Woods Hole, Massachusetts, United States of America
| | - Daniel E. Pendleton
- Anderson Cabot Center for Ocean Life at the New England Aquarium, Boston, Massachusetts, United States of America
| | - Jooke Robbins
- Center for Coastal Studies, Provincetown, Massachusetts, United States of America
| | - Jason J. Roberts
- Marine Geospatial Ecology Lab, Duke University, Durham, North Carolina, United States of America
| | | | - Errol I. Ronje
- National Centers for Environmental Information, NOAA, Stennis Space Center, Hancock County, Mississippi, United States of America
| | - Patricia E. Rosel
- Marine Mammal and Turtle Division, Southeast Fisheries Science Center, NOAA Fisheries, Lafayette, Louisiana, United States of America
| | - Todd Speakman
- National Marine Mammal Foundation, Charleston, South Carolina, United States of America
| | | | - Tara Stevens
- CSA Ocean Sciences, East Greenwich, Rhode Island, United States of America
| | - Megan Stolen
- Blue World Research Institute, Merritt Island, Florida, United States of America
| | - Reny Tyson Moore
- Sarasota Dolphin Research Program, Chicago Zoological Society, Sarasota, Florida, United States of America
| | - Nicole L. Vollmer
- CIMAS, University of Miami, Under Contract for Marine Mammal and Turtle Division, Southeast Fisheries Science Center, NOAA Fisheries, Lafayette, Louisiana, United States of America
| | - Randall Wells
- Sarasota Dolphin Research Program, Chicago Zoological Society, Sarasota, Florida, United States of America
| | - Heidi R. Whitehead
- Texas Marine Mammal Stranding Network, Galveston, Texas, United States of America
| | - Amy Whitt
- Azura Consulting, Garland, Texas, United States of America
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Wijburg SR, Maas M, Sprong H, Gröne A, van der Schrier G, Rijks JM. Assessing Surveillance of Wildlife Diseases by Determining Mammal Species Vulnerability to Climate Change. Transbound Emerg Dis 2023; 2023:7628262. [PMID: 40303742 PMCID: PMC12016766 DOI: 10.1155/2023/7628262] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/06/2023] [Revised: 07/19/2023] [Accepted: 07/31/2023] [Indexed: 05/02/2025]
Abstract
Climate change is one of the drivers of wildlife-borne disease emergence, as it can affect species abundance and fitness, host immunocompetence, and interactions with pathogens. To detect emerging wildlife-borne diseases, countries may implement general wildlife-disease surveillance systems. Such surveillance exists in the Netherlands. However, it is unclear how well it covers host species vulnerable to climate change and consequently disease emergence in these species. Therefore, we performed a trait-based vulnerability assessment (TVA) to quantify species vulnerability to climate change for 59 Dutch terrestrial mammals. Species' vulnerability was estimated based on the magnitude of climatic change within the species' distribution (exposure), the species' potential to persist in situ (sensitivity), and the species' ability to adjust (adaptive capacity). Using these vulnerability categories, we identified priority species at risk for disease emergence due to climate change. Subsequently, we assessed the frequency of occurrence of these priority species compared to other mammal species examined in general wildlife disease surveillance during 2008-2022. We identified 25% of the mammal species to be highly exposed, 24% to be highly sensitive, and 22% to have a low adaptive capacity. The whiskered myotis and the garden dormouse were highly vulnerable (i.e., highly exposed, highly sensitive, and low adaptive capacity), but they are rare in the Netherlands. The Western barbastelle, the pond bat, and the Daubenton's myotis were potential adapters (highly exposed, highly sensitive, and high adaptive capacity). Species vulnerable to climate change were relatively poorly represented in current general surveillance. Our research shows a comprehensive approach that considers both exposures to climate change and ecological factors to assess vulnerability. TVAs, as presented in this study, can easily be adapted to include extra drivers and species, and we would therefore recommend surveillance institutes to consider integrating these types of assessments for evaluating and improving surveillance for wildlife-borne disease emergence.
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Affiliation(s)
- S. R. Wijburg
- Centre for Infectious Disease Control, National Institute for Public Health and the Environment (RIVM), 3720 BA Bilthoven, Netherlands
- Dutch Wildlife Health Centre, Division of Pathology, Department of Biomolecular Health Sciences, Faculty of Veterinary Medicine, University of Utrecht, Yalelaan 1, 3584 CL, Utrecht, Netherlands
| | - M. Maas
- Centre for Infectious Disease Control, National Institute for Public Health and the Environment (RIVM), 3720 BA Bilthoven, Netherlands
| | - H. Sprong
- Centre for Infectious Disease Control, National Institute for Public Health and the Environment (RIVM), 3720 BA Bilthoven, Netherlands
| | - A. Gröne
- Dutch Wildlife Health Centre, Division of Pathology, Department of Biomolecular Health Sciences, Faculty of Veterinary Medicine, University of Utrecht, Yalelaan 1, 3584 CL, Utrecht, Netherlands
| | - G. van der Schrier
- Royal Netherlands Meteorological Institute (KNMI), 3731 GA De Bilt, Netherlands
| | - J. M. Rijks
- Dutch Wildlife Health Centre, Division of Pathology, Department of Biomolecular Health Sciences, Faculty of Veterinary Medicine, University of Utrecht, Yalelaan 1, 3584 CL, Utrecht, Netherlands
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Melton AE, Moran K, Martinez P, Ellestad P, Milliken E, Morales W, Child AW, Richardson BA, Serpe M, Novak SJ, Buerki S. A genotype × environment experiment reveals contrasting response strategies to drought between populations of a keystone species ( Artemisia tridentata; Asteraceae). PLANT-ENVIRONMENT INTERACTIONS (HOBOKEN, N.J.) 2023; 4:201-214. [PMID: 37583876 PMCID: PMC10423975 DOI: 10.1002/pei3.10119] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 03/02/2023] [Revised: 06/18/2023] [Accepted: 07/11/2023] [Indexed: 08/17/2023]
Abstract
Western North America has been experiencing persistent drought exacerbated by climate change for over two decades. This extreme climate event is a clear threat to native plant communities. Artemisia tridentata is a keystone shrub species in western North America and is threatened by climate change, urbanization, and wildfire. A drought Genotype × Environment (G × E) experiment was conducted to assess phenotypic plasticity and differential gene expression in A. tridentata. The G × E experiment was performed on diploid A. tridentata seedlings from two populations (one from Idaho, USA and one from Utah, USA), which experience differing levels of drought stress during the summer months. Photosynthetic data, leaf temperature, and gene expression levels were compared between treatments and populations. The Utah population maintained higher photosynthetic rates and photosynthetic efficiency than the Idaho population under drought stress. The Utah population also exhibited far greater transcriptional plasticity than the Idaho population and expressed genes of response pathways distinct from those of the Idaho population. Populations of A. tridentata differ greatly in their drought response pathways, likely due to differences in response pathways that have evolved under distinct climatic regimes. Epigenetic processes likely contribute to the observed differences between the populations.
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Affiliation(s)
- Anthony E. Melton
- Department of Biological SciencesBoise State UniversityBoiseIdahoUSA
| | - Kara Moran
- Department of Biological SciencesBoise State UniversityBoiseIdahoUSA
| | - Peggy Martinez
- Department of Biological SciencesBoise State UniversityBoiseIdahoUSA
| | - Paige Ellestad
- Department of Biological SciencesBoise State UniversityBoiseIdahoUSA
| | - Erin Milliken
- Department of Biological SciencesBoise State UniversityBoiseIdahoUSA
| | - Walker Morales
- Department of Biological SciencesBoise State UniversityBoiseIdahoUSA
| | - Andrew W. Child
- Research Computing and Data ServicesUniversity of IdahoMoscowIdahoUSA
| | | | - Marcelo Serpe
- Department of Biological SciencesBoise State UniversityBoiseIdahoUSA
| | - Stephen J. Novak
- Department of Biological SciencesBoise State UniversityBoiseIdahoUSA
| | - Sven Buerki
- Department of Biological SciencesBoise State UniversityBoiseIdahoUSA
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Willig MR, Presley SJ. Reproductive phenologies of phyllostomid bat populations and ensembles from lowland Amazonia. J Mammal 2023; 104:752-769. [PMID: 37545669 PMCID: PMC10399921 DOI: 10.1093/jmammal/gyad032] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/12/2022] [Accepted: 02/15/2023] [Indexed: 08/08/2023] Open
Abstract
Natural selection should favor individuals that synchronize energy-demanding aspects of reproductive activity with periods of high resource abundance and predictability, leading to seasonal patterns of reproduction at the population level. Nonetheless, few studies-especially those on bats in the Neotropics-have used rigorous quantitative criteria to distinguish among phenological patterns for different populations from the same habitat or for the same species in different habitats. To explore such issues, we quantified annual patterns of reproduction in male and in female bats from lowland Amazonia (environs of Iquitos, Peru), and did so at the level of populations and ensembles. Five species exhibited unimodal patterns including Artibeus obscurus, A. planirostris, Carollia benkeithi, Phyllostomus hastatus, and Rhinophylla pumilio. Two species (A. lituratus and Glossophaga soricina) evinced bimodal patterns with reproductive peaks separated by patterns of inactivity, whereas four species (C. brevicauda, C. perspicillata, Sturnira lilium, and S. tildae) evinced a bimodal pattern in which peaks in activity occur in tandem, with the first peak generally markedly higher than the second peak. Frugivore, gleaning animalivore, and nectarivore ensembles exhibited bimodal, unimodal, and bimodal reproductive phenologies, respectively. Nonetheless, interannual variation in phenology (i.e., the monthly timing of peaks within a season rather than the number of peaks per year) characterized four (A. obscurus, C. brevicauda, C. perspicillata, and S. lilium) of the eight species and each of the three ensembles (frugivores, gleaning animalivores, and nectarivores) with adequate sampling. Regardless of interspecific variation in strategies, the phenology of reproduction enhances the likelihood that parturition and recruitment of young into the population occurs during the wet season, the period of likely highest resource abundance. Based on a comparison of our results with those from other well-studied bat populations, four species did not exhibit geographic variation in reproductive phenologies (A. obscurus, G. soricina, C. brevicauda, and R. pumilio), whereas three species evinced such geographic variation (A. lituratus, A. planirostris, and C. perspicillata). Climate change will likely alter the seasons and extents of propitious times for reproductive activities, as well as the reliability of proximate cues for initiating reproduction, compromising current reproductive strategies and leading to altered phenological patterns of reproduction or reproductive success, possibly resulting in local extinction of some species.
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Affiliation(s)
- Michael R Willig
- Institute of the Environment, Center for Environmental Sciences & Engineering, and Department of Ecology & Evolutionary Biology, University of Connecticut, Storrs, Connecticut 06269-4210, USA
| | - Steven J Presley
- Institute of the Environment, Center for Environmental Sciences & Engineering, and Department of Ecology & Evolutionary Biology, University of Connecticut, Storrs, Connecticut 06269-4210, USA
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8
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Martinez P, Serpe M, Barron R, Buerki S. Acclimation and hardening of a slow-growing woody species emblematic to western North America from in vitro plantlets. APPLICATIONS IN PLANT SCIENCES 2023; 11:e11515. [PMID: 37051580 PMCID: PMC10083460 DOI: 10.1002/aps3.11515] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 09/06/2022] [Revised: 12/09/2022] [Accepted: 12/15/2022] [Indexed: 06/19/2023]
Abstract
Premise Determining the tolerance of plant populations to climate change requires the development of biotechnological protocols producing genetically identical individuals used for genotype-by-environment experiments. Such protocols are missing for slow-growth, woody plants; to address this gap, this study uses Artemisia tridentata, a western North American keystone shrub, as model. Methods and Results The production of individual lines is a two-step process: in vitro propagation under aseptic conditions followed by ex vitro acclimation and hardening. Due to aseptic growth conditions, in vitro plantlets exhibit maladapted phenotypes, and this protocol focuses on presenting an approach promoting morphogenesis for slow-growth, woody species. Survival was used as the main criterion determining successful acclimation and hardening. Phenotypic changes were confirmed by inspecting leaf anatomy, and shoot water potential was used to ensure that plantlets were not water stressed. Conclusions Although our protocol has lower survival rates (11-41%) compared to protocols developed for herbaceous, fast-growing species, it provides a benchmark for slow-growth, woody species occurring in dry ecosystems.
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Affiliation(s)
- Peggy Martinez
- Department of Biological SciencesBoise State UniversityBoiseIdahoUSA
| | - Marcelo Serpe
- Department of Biological SciencesBoise State UniversityBoiseIdahoUSA
| | | | - Sven Buerki
- Department of Biological SciencesBoise State UniversityBoiseIdahoUSA
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9
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Huang Q, Bateman BL, Michel NL, Pidgeon AM, Radeloff VC, Heglund P, Allstadt AJ, Nowakowski AJ, Wong J, Sauer JR. Modeled distribution shifts of North American birds over four decades based on suitable climate alone do not predict observed shifts. THE SCIENCE OF THE TOTAL ENVIRONMENT 2023; 857:159603. [PMID: 36272474 DOI: 10.1016/j.scitotenv.2022.159603] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/19/2022] [Revised: 10/14/2022] [Accepted: 10/17/2022] [Indexed: 06/16/2023]
Abstract
As climate change alters the global environment, it is critical to understand the relationship between shifting climate suitability and species distributions. Key questions include whether observed changes in population abundance are aligned with the velocity and direction of shifts predicted by climate suitability models and if the responses are consistent among species with similar ecological traits. We examined the direction and velocity of the observed abundance-based distribution centroids compared with the model-predicted bioclimatic distribution centroids of 250 bird species across the United States from 1969 to 2011. We hypothesized that there is a significant positive correlation in both direction and velocity between the observed and the modeled shifts. We then tested five additional hypotheses that predicted differential shifting velocity based on ecological adaptability and climate change exposure. Contrary to our hypotheses, we found large differences between the observed and modeled shifts among all studied bird species and within specific ecological guilds. However, temperate migrants and habitat generalist species tended to have higher velocity of observed shifts than other species. Neotropical migratory and wetland birds also had significantly different observed velocities than their counterparts, which may be due to their climate change exposure. The velocity based on modeled bioclimatic suitability did not exhibit significant differences among most guilds. Boreal forest birds were the only guild with significantly faster modeled-shifts than the other groups, suggesting an elevated conservation risk for high latitude and altitude species. The highly idiosyncratic species responses to climate and the mismatch between shifts in modeled and observed distribution centroids highlight the challenge of predicting species distribution change based solely on climate suitability and the importance of non-climatic factors traits in shaping species distributions.
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Affiliation(s)
- Qiongyu Huang
- Smithsonian's National Zoo and Conservation Biology Institute, Front Royal, VA 22630, USA.
| | - Brooke L Bateman
- Science Division, National Audubon Society, 225 Varick St, New York, NY 10014, USA
| | - Nicole L Michel
- Science Division, National Audubon Society, 225 Varick St, New York, NY 10014, USA
| | - Anna M Pidgeon
- Forest and Wildlife Ecology Department, University of Wisconsin-Madison, 1630 Linden Drive, Madison, WI 53706, USA
| | - Volker C Radeloff
- Forest and Wildlife Ecology Department, University of Wisconsin-Madison, 1630 Linden Drive, Madison, WI 53706, USA
| | - Patricia Heglund
- US Fish and Wildlife Service, NWRS, Region 3, 2630 Fanta Reed Road, La Crosse, WI 54603, USA
| | - Andrew J Allstadt
- US Fish and Wildlife Service, 5600 West American Boulevard, Bloomington, MN 55437, USA
| | - A Justin Nowakowski
- Smithsonian's National Zoo and Conservation Biology Institute, Front Royal, VA 22630, USA; Moore Center for Science, Conservation International, 2011 Crystal Dr #600, Arlington, VA 22202, USA
| | - Jesse Wong
- Smithsonian's National Zoo and Conservation Biology Institute, Front Royal, VA 22630, USA
| | - John R Sauer
- USGS Patuxent Wildlife Research Center, 12100 Beech Forest Road, Laurel, MD 20708, USA
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10
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Haji M, Bakuza JS. Climate Change Vulnerability Assessment for the Rondo Dwarf Galago in Coastal Forests, Tanzania. ENVIRONMENTAL MANAGEMENT 2023; 71:145-158. [PMID: 35195785 DOI: 10.1007/s00267-022-01605-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/17/2021] [Accepted: 01/31/2022] [Indexed: 06/14/2023]
Abstract
Negative effects of climate change on organisms and their habitats pose significant conservation challenges especially for species already under siege from other threats like habitat loss, pollution and diseases. This study assessed the extent to which the Rondo dwarf galago (Paragalago rondoensis), an endangered primate in the coastal forests in eastern Tanzania is threatened by climate change. Past and projected temperature and precipitation records from Tanzania Meteorological Authority were overlaid with P. rondoensis distribution range to assess the species exposure to climate extremes. Traits predisposing it to climate change were also obtained from published literature and experts on the organism's biology to determine its sensitivity. The P. rondoensis vulnerability to climate change was obtained by feeding exposure and sensitivity data into Natureserve's Climate Change Vulnerability Index (CCVI) software. Results indicated that most of Rondo galago's habitat and distribution range will be exposed to a temperature increase of 1 to 1.3 °C by 2050, which if combined with other threats, is likely to further endanger the species survival. Due to its diet specialization on insects, which are moisture-dependent, any extreme decrease in humidity will reduce its diet availability thereby threatening the species further. Moreover, Rondo galago's limited habitats and distribution range in the East African tropical coastal forests, raises the species threat level. Rondo galago's conservation should be enhanced through creation of corridors to facilitate its possible shifts to conducive and safer habitats in the event of extreme weather. Climate change aspects should also be integrated into the species conservation strategies.
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Affiliation(s)
- Mohamed Haji
- Aga Khan Education Services Tanzania, P.O. Box 125, Fire Road, Upanga, Dar es Salaam, Tanzania
- Centre for Climate Change Studies, University of Dar es Salaam, P.O. Box 35181, Dar es Salaam, Tanzania
| | - Jared Sylivester Bakuza
- Department of Biological Sciences, Faculty of Science, Dar es Salaam University College of Education, University of Dar es Salaam, P.O. Box 2329, Dar es Salaam, Tanzania.
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11
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Hossain B, Shi G, Ajiang C, Sarker MNI, Sohel MS, Sun Z, Hamza A. Impact of climate change on human health: evidence from riverine island dwellers of Bangladesh. INTERNATIONAL JOURNAL OF ENVIRONMENTAL HEALTH RESEARCH 2022; 32:2359-2375. [PMID: 34374325 DOI: 10.1080/09603123.2021.1964447] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/12/2021] [Accepted: 08/01/2021] [Indexed: 06/13/2023]
Abstract
This study aims to explore the impact of climate change on health, including local adaptation strategies. A mixed-method approach has been used in this study. The results reveal that increasing the frequency of flooding, severity of riverbank erosion and drought, and rising disease outbreak are the highest indicators of climate change perceived by riverine island (char) dwellers, which is similar to the observed data. It also uncovers, approximately all respondents encounter several health-related issues during different seasons where prevailing cold and cough with fever, skin diseases, and diarrhoea are the leading ailments. Several adaptation strategies are accommodated by char inhabitants in order to enhance resilience against the climate change health impacts, but the paucity of money, disrupted communication, lack of formal health-care centre are the most obstacles to the sustainability of adaptation. This research recommends that healthcare-associated project should be performed through proper monitoring for exterminating char dwellers' health issues.
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Affiliation(s)
- Babul Hossain
- Research Center for Environment and Society, Hohai University, Nanjing, China
| | - Guoqing Shi
- Asian Research Center of Hohai University, Nanjing, China
| | - Chen Ajiang
- Research Center for Environment and Society, Hohai University, Nanjing, China
| | - Md Nazirul Islam Sarker
- School of Political Science and Public Administration, Neijiang Normal University, Neijiang, China
| | | | - Zhonggen Sun
- School of Public Administration, Hohai University, Nanjing, China
| | - Amir Hamza
- Department Sociology, School of Public Administration, Hohai University, Nanjing, China
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12
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Thoya P, Kadagi NI, Wambiji N, Williams SM, Pepperell J, Möllmann C, Schiele KS, Maina J. Environmental controls of billfish species in the Indian Ocean and implications for their management and conservation. DIVERS DISTRIB 2022. [DOI: 10.1111/ddi.13525] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/03/2022] Open
Affiliation(s)
- Pascal Thoya
- School of Natural Sciences Macquarie University Sydney New South Wales Australia
- Kenya Marine and Fisheries Research Institute Mombasa Kenya
- Institute for Marine Ecosystem and Fisheries Science Center for Earth System Research and Sustainability (CEN) University of Hamburg Hamburg Germany
- Leibniz Institute for Baltic Sea Research Warnemuende (IOW) Warnemuende Germany
| | | | - Nina Wambiji
- Kenya Marine and Fisheries Research Institute Mombasa Kenya
| | - Samuel Mackey Williams
- The Department of Agriculture and Fisheries Queensland Brisbane Australia
- School of Biological Sciences The University of Queensland St Lucia Queensland Australia
| | - Julian Pepperell
- Pepperell Research and Consulting Pty Ltd, Noosaville DC Queensland Australia
| | - Christian Möllmann
- Institute for Marine Ecosystem and Fisheries Science Center for Earth System Research and Sustainability (CEN) University of Hamburg Hamburg Germany
| | | | - Joseph Maina
- School of Natural Sciences Macquarie University Sydney New South Wales Australia
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13
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Sonntag S, Fourcade Y. Where will species on the move go? Insights from climate connectivity modelling across European terrestrial habitats. J Nat Conserv 2022. [DOI: 10.1016/j.jnc.2022.126139] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
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14
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Camac JS, Umbers KDL, Morgan JW, Geange SR, Hanea A, Slatyer RA, McDougall KL, Venn SE, Vesk PA, Hoffmann AA, Nicotra AB. Predicting species and community responses to global change using structured expert judgement: An Australian mountain ecosystems case study. GLOBAL CHANGE BIOLOGY 2021; 27:4420-4434. [PMID: 34117681 PMCID: PMC8457067 DOI: 10.1111/gcb.15750] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/14/2021] [Accepted: 05/24/2021] [Indexed: 05/07/2023]
Abstract
Conservation managers are under increasing pressure to make decisions about the allocation of finite resources to protect biodiversity under a changing climate. However, the impacts of climate and global change drivers on species are outpacing our capacity to collect the empirical data necessary to inform these decisions. This is particularly the case in the Australian Alps which have already undergone recent changes in climate and experienced more frequent large-scale bushfires. In lieu of empirical data, we use a structured expert elicitation method (the IDEA protocol) to estimate the change in abundance and distribution of nine vegetation groups and 89 Australian alpine and subalpine species by the year 2050. Experts predicted that most alpine vegetation communities would decline in extent by 2050; only woodlands and heathlands are predicted to increase in extent. Predicted species-level responses for alpine plants and animals were highly variable and uncertain. In general, alpine plants spanned the range of possible responses, with some expected to increase, decrease or not change in cover. By contrast, almost all animal species are predicted to decline or not change in abundance or elevation range; more species with water-centric life-cycles are expected to decline in abundance than other species. While long-term ecological data will always be the gold standard for informing the future of biodiversity, the method and outcomes outlined here provide a pragmatic and coherent basis upon which to start informing conservation policy and management in the face of rapid change and a paucity of data.
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Affiliation(s)
- James S. Camac
- Centre of Excellence for Biosecurity Risk AnalysisSchool of BioSciencesThe University of MelbourneParkvilleVic.Australia
- Research Centre for Applied Alpine EcologyLa Trobe UniversityBundooraVic.Australia
| | - Kate D. L. Umbers
- School of ScienceWestern Sydney UniversityPenrithNSWAustralia
- Hawkesbury Institute for the EnvironmentWestern Sydney UniversityPenrithNSWAustralia
| | - John W. Morgan
- Research Centre for Applied Alpine EcologyLa Trobe UniversityBundooraVic.Australia
- Department of EcologyEnvironment and EvolutionLa Trobe UniversityBundooraVic.Australia
| | - Sonya R. Geange
- Research School of BiologyAustralian National UniversityActonACTAustralia
| | - Anca Hanea
- Centre of Excellence for Biosecurity Risk AnalysisSchool of BioSciencesThe University of MelbourneParkvilleVic.Australia
| | - Rachel A. Slatyer
- Research School of BiologyAustralian National UniversityActonACTAustralia
| | - Keith L. McDougall
- NSW Department of Planning, Industry and EnvironmentQueanbeyanNSWAustralia
| | - Susanna E. Venn
- Centre for Integrative EcologySchool of Life and Environmental SciencesDeakin UniversityBurwoodVic.Australia
| | - Peter A. Vesk
- School of BioSciencesThe University of MelbourneParkvilleVic.Australia
| | - Ary A. Hoffmann
- Bio21 InstituteSchool of BioSciencesThe University of MelbourneParkvilleVic.Australia
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15
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Khalsa NS, Gatt KP, Sutton TM, Kelley AL. Characterization of the abiotic drivers of abundance of nearshore Arctic fishes. Ecol Evol 2021; 11:11491-11506. [PMID: 34429935 PMCID: PMC8366885 DOI: 10.1002/ece3.7940] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/18/2020] [Revised: 06/29/2021] [Accepted: 07/08/2021] [Indexed: 11/15/2022] Open
Abstract
Fish are critical ecologically and socioeconomically for subsistence economies in the Arctic, an ecosystem undergoing unprecedented environmental change. Our understanding of the responses of nearshore Arctic fishes to environmental change is inadequate because of limited research on the physicochemical drivers of abundance occurring at a fine scale. Here, high-frequency in situ measurements of pH, temperature, salinity, and dissolved oxygen were paired with daily fish catches in nearshore Alaskan waters of the Beaufort Sea. Due to the threat that climate change poses to high-latitude marine ecosystems, our main objective was to characterize the abiotic drivers of abundance and elucidate how nearshore fish communities may change in the future. We used generalized additive models (GAMs) to describe responses to the nearshore environment for 18 fish species. Relationships between abundance and the physicochemical environment were variable between species and reflected life history. Each abiotic covariate was significant in at least one GAM, exhibiting both nonlinear and linear associations with abundance. Temperature was the most important predictor of abundance and was significant in GAMs for 11 species. Notably, pH was a significant predictor of abundance for six species: Arctic cod (Boreogadus saida), broad whitefish (Coregonus nasus), Dolly Varden (Salvelinus malma), ninespine stickleback (Pungitius pungitius), saffron cod (Eleginus gracilis), and whitespotted greenling (Hexagrammos stelleri). Broad whitefish and whitespotted greenling abundance was positively associated with pH, while Arctic cod and saffron cod abundance was negatively associated with pH. These results may be a bellwether for future nearshore Arctic fish community change by providing a foundational characterization of the relationships between abundance and the abiotic environment, particularly in regard to pH, and demonstrate the importance of including a wider range of physicochemical habitat covariates in future research.
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Affiliation(s)
- Noah S. Khalsa
- School of Marine and Atmospheric SciencesStony Brook UniversityStony BrookNYUSA
- College of Fisheries and Ocean SciencesUniversity of Alaska FairbanksFairbanksAlaskaUSA
| | - Kyle P. Gatt
- College of Fisheries and Ocean SciencesUniversity of Alaska FairbanksFairbanksAlaskaUSA
| | - Trent M. Sutton
- College of Fisheries and Ocean SciencesUniversity of Alaska FairbanksFairbanksAlaskaUSA
| | - Amanda L. Kelley
- College of Fisheries and Ocean SciencesUniversity of Alaska FairbanksFairbanksAlaskaUSA
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16
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Seaborn T, Griffith D, Kliskey A, Caudill CC. Building a bridge between adaptive capacity and adaptive potential to understand responses to environmental change. GLOBAL CHANGE BIOLOGY 2021; 27:2656-2668. [PMID: 33666302 DOI: 10.1111/gcb.15579] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/10/2020] [Accepted: 02/16/2021] [Indexed: 06/12/2023]
Abstract
Adaptive capacity is a topic at the forefront of environmental change research with roots in both social, ecological, and evolutionary science. It is closely related to the evolutionary biology concept of adaptive potential. In this systematic literature review, we: (1) summarize the history of these topics and related fields; (2) assess relationship(s) between the concepts among disciplines and the use of the terms in climate change research, and evaluate methodologies, metrics, taxa biases, and the geographic scale of studies; and (3) provide a synthetic conceptual framework to clarify concepts. Bibliometric analyses revealed the terms have been used most frequently in conservation and evolutionary biology journals, respectively. There has been a greater growth in studies of adaptive potential than adaptive capacity since 2001, but a greater geographical extent of adaptive capacity studies. Few studies include both, and use is often superficial. Our synthesis considers adaptive potential as one process contributing to adaptive capacity of complex systems, notes "sociological" adaptive capacity definitions include actions aimed at desired outcome (i.e., policies) as a system driver whereas "biological" definitions exclude such drivers, and suggests models of adaptive capacity require integration of evolutionary and social-ecological system components.
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Affiliation(s)
- Travis Seaborn
- Department of Fish and Wildlife Sciences, University of Idaho, Moscow, ID, USA
| | - David Griffith
- Center for Resilient Communities, University of Idaho, Moscow, ID, USA
| | - Andrew Kliskey
- Center for Resilient Communities, University of Idaho, Moscow, ID, USA
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17
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Leclerc C, Courchamp F, Bellard C. Future climate change vulnerability of endemic island mammals. Nat Commun 2020; 11:4943. [PMID: 33009384 PMCID: PMC7532204 DOI: 10.1038/s41467-020-18740-x] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/21/2020] [Accepted: 08/28/2020] [Indexed: 12/30/2022] Open
Abstract
Despite their high vulnerability, insular ecosystems have been largely ignored in climate change assessments, and when they are investigated, studies tend to focus on exposure to threats instead of vulnerability. The present study examines climate change vulnerability of islands, focusing on endemic mammals and by 2050 (RCPs 6.0 and 8.5), using trait-based and quantitative-vulnerability frameworks that take into account exposure, sensitivity, and adaptive capacity. Our results suggest that all islands and archipelagos show a certain level of vulnerability to future climate change, that is typically more important in Pacific Ocean ones. Among the drivers of vulnerability to climate change, exposure was rarely the main one and did not explain the pattern of vulnerability. In addition, endemic mammals with long generation lengths and high dietary specializations are predicted to be the most vulnerable to climate change. Our findings highlight the importance of exploring islands vulnerability to identify the highest climate change impacts and to avoid the extinction of unique biodiversity. Island ecosystems are notoriously vulnerable to anthropogenic species losses. Here, the authors identify insular hotspots of vulnerability to climate change (under RCPs 6.0 and 8.5) in mammals via a trait-based, quantitative vulnerability framework, finding that exposure to climate change is not a reliable proxy to assess species vulnerability, while sensitivity and adaptive capacity are crucial to understand vulnerability.
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Affiliation(s)
- Camille Leclerc
- Université Paris-Saclay, CNRS, AgroParisTech, Ecologie Systématique Evolution, 91405, Orsay, France. .,INRAE, Univ. of Aix Marseille, UMR RECOVER, Aix-en-Provence, France.
| | - Franck Courchamp
- Université Paris-Saclay, CNRS, AgroParisTech, Ecologie Systématique Evolution, 91405, Orsay, France
| | - Céline Bellard
- Université Paris-Saclay, CNRS, AgroParisTech, Ecologie Systématique Evolution, 91405, Orsay, France
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18
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Fremout T, Thomas E, Gaisberger H, Van Meerbeek K, Muenchow J, Briers S, Gutierrez-Miranda CE, Marcelo-Peña JL, Kindt R, Atkinson R, Cabrera O, Espinosa CI, Aguirre-Mendoza Z, Muys B. Mapping tree species vulnerability to multiple threats as a guide to restoration and conservation of tropical dry forests. GLOBAL CHANGE BIOLOGY 2020; 26:3552-3568. [PMID: 32020698 DOI: 10.1111/gcb.15028] [Citation(s) in RCA: 23] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/21/2019] [Accepted: 12/30/2019] [Indexed: 06/10/2023]
Abstract
Understanding the vulnerability of tree species to anthropogenic threats is important for the efficient planning of restoration and conservation efforts. We quantified and compared the effects of future climate change and four current threats (fire, habitat conversion, overgrazing and overexploitation) on the 50 most common tree species of the tropical dry forests of northwestern Peru and southern Ecuador. We used an ensemble modelling approach to predict species distribution ranges, employed freely accessible spatial datasets to map threat exposures, and developed a trait-based scoring approach to estimate species-specific sensitivities, using differentiated trait weights in accordance with their expected importance in determining species sensitivities to specific threats. Species-specific vulnerability maps were constructed from the product of the exposure maps and the sensitivity estimates. We found that all 50 species face considerable threats, with an average of 46% of species' distribution ranges displaying high or very high vulnerability to at least one of the five threats. Our results suggest that current levels of habitat conversion, overexploitation and overgrazing pose larger threats to most of the studied species than climate change. We present a spatially explicit planning strategy for species-specific restoration and conservation actions, proposing management interventions to focus on (a) in situ conservation of tree populations and seed collection for tree planting activities in areas with low vulnerability to climate change and current threats; (b) ex situ conservation or translocation of populations in areas with high climate change vulnerability; and (c) active planting or assisted regeneration in areas under high current threat vulnerability but low climate change vulnerability, provided that interventions are in place to lower threat pressure. We provide an online, user-friendly tool to visualize both the vulnerability maps and the maps indicating priority restoration and conservation actions.
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Affiliation(s)
- Tobias Fremout
- Division of Forest, Nature and Landscape, Department of Earth and Environmental Sciences, KU Leuven, Leuven, Belgium
- Alliance Bioversity International - CIAT, Lima, Peru
| | - Evert Thomas
- Alliance Bioversity International - CIAT, Lima, Peru
| | | | - Koenraad Van Meerbeek
- Division of Forest, Nature and Landscape, Department of Earth and Environmental Sciences, KU Leuven, Leuven, Belgium
| | - Jannes Muenchow
- Institute of Geography, Friedrich Schiller University, Jena, Germany
| | - Siebe Briers
- Division of Forest, Nature and Landscape, Department of Earth and Environmental Sciences, KU Leuven, Leuven, Belgium
| | | | | | | | | | - Omar Cabrera
- Departamento de Ciencias Naturales, Universidad Técnica Particular de Loja, Loja, Ecuador
| | - Carlos I Espinosa
- Departamento de Ciencias Naturales, Universidad Técnica Particular de Loja, Loja, Ecuador
| | | | - Bart Muys
- Division of Forest, Nature and Landscape, Department of Earth and Environmental Sciences, KU Leuven, Leuven, Belgium
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19
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Mascarenhas R, Ruziska FM, Moreira EF, Campos AB, Loiola M, Reis K, Trindade-Silva AE, Barbosa FAS, Salles L, Menezes R, Veiga R, Coutinho FH, Dutilh BE, Guimarães PR, Assis APA, Ara A, Miranda JGV, Andrade RFS, Vilela B, Meirelles PM. Integrating Computational Methods to Investigate the Macroecology of Microbiomes. Front Genet 2020; 10:1344. [PMID: 32010196 PMCID: PMC6979972 DOI: 10.3389/fgene.2019.01344] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/31/2018] [Accepted: 12/09/2019] [Indexed: 12/15/2022] Open
Abstract
Studies in microbiology have long been mostly restricted to small spatial scales. However, recent technological advances, such as new sequencing methodologies, have ushered an era of large-scale sequencing of environmental DNA data from multiple biomes worldwide. These global datasets can now be used to explore long standing questions of microbial ecology. New methodological approaches and concepts are being developed to study such large-scale patterns in microbial communities, resulting in new perspectives that represent a significant advances for both microbiology and macroecology. Here, we identify and review important conceptual, computational, and methodological challenges and opportunities in microbial macroecology. Specifically, we discuss the challenges of handling and analyzing large amounts of microbiome data to understand taxa distribution and co-occurrence patterns. We also discuss approaches for modeling microbial communities based on environmental data, including information on biological interactions to make full use of available Big Data. Finally, we summarize the methods presented in a general approach aimed to aid microbiologists in addressing fundamental questions in microbial macroecology, including classical propositions (such as “everything is everywhere, but the environment selects”) as well as applied ecological problems, such as those posed by human induced global environmental changes.
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Affiliation(s)
| | - Flávia M Ruziska
- Institute of Biology, Federal University of Bahia, Salvador, Brazil
| | | | - Amanda B Campos
- Institute of Biology, Federal University of Bahia, Salvador, Brazil
| | - Miguel Loiola
- Institute of Biology, Federal University of Bahia, Salvador, Brazil
| | - Kaike Reis
- Chemical Engineering Department, Polytechnic School of Federal University of Bahia, Salvador, Brazil
| | - Amaro E Trindade-Silva
- Institute of Biology, Federal University of Bahia, Salvador, Brazil.,Department of Ecology, Biosciences Institute, University of Sao Paulo, Sao Paulo, Brazil
| | | | - Lucas Salles
- Institute of Geology, Federal University of Bahia, Salvador, Brazil
| | - Rafael Menezes
- Department of Ecology, Biosciences Institute, University of Sao Paulo, Sao Paulo, Brazil.,Institute of Physics, Federal University of Bahia, Salvador, Brazil
| | - Rafael Veiga
- Center of Data and Knowledge Integration for Health (CIDACS), Instituto Gonçalo Muniz, Fundação Oswaldo Cruz, Brazil
| | - Felipe H Coutinho
- Evolutionary Genomics Group, Departamento de Producción Vegetal y Microbiología, Universidad Miguel Hernández de Elche, San Juan de Alicante, Spain
| | - Bas E Dutilh
- Theoretical Biology and Bioinformatics, Utrecht University, Utrecht, Netherlands.,Centre for Molecular and Biomolecular Informatics, Radboud University Medical Centre, Nijmegen, Netherlands
| | - Paulo R Guimarães
- Department of Ecology, Biosciences Institute, University of Sao Paulo, Butantã, Brazil
| | - Ana Paula A Assis
- Department of Ecology, Biosciences Institute, University of Sao Paulo, Butantã, Brazil
| | - Anderson Ara
- Institute of Mathematics, Federal University of Bahia, Salvador, Brazil
| | - José G V Miranda
- Institute of Physics, Federal University of Bahia, Salvador, Brazil
| | - Roberto F S Andrade
- Institute of Physics, Federal University of Bahia, Salvador, Brazil.,Center of Data and Knowledge Integration for Health (CIDACS), Instituto Gonçalo Muniz, Fundação Oswaldo Cruz, Brazil
| | - Bruno Vilela
- Institute of Biology, Federal University of Bahia, Salvador, Brazil
| | - Pedro Milet Meirelles
- Institute of Biology, Federal University of Bahia, Salvador, Brazil.,Department of Ecology, Biosciences Institute, University of Sao Paulo, Sao Paulo, Brazil
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20
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Diele-Viegas LM, Werneck FP, Rocha CFD. Climate change effects on population dynamics of three species of Amazonian lizards. Comp Biochem Physiol A Mol Integr Physiol 2019; 236:110530. [DOI: 10.1016/j.cbpa.2019.110530] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/09/2019] [Revised: 06/28/2019] [Accepted: 07/10/2019] [Indexed: 11/29/2022]
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21
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Crozier LG, McClure MM, Beechie T, Bograd SJ, Boughton DA, Carr M, Cooney TD, Dunham JB, Greene CM, Haltuch MA, Hazen EL, Holzer DM, Huff DD, Johnson RC, Jordan CE, Kaplan IC, Lindley ST, Mantua NJ, Moyle PB, Myers JM, Nelson MW, Spence BC, Weitkamp LA, Williams TH, Willis-Norton E. Climate vulnerability assessment for Pacific salmon and steelhead in the California Current Large Marine Ecosystem. PLoS One 2019; 14:e0217711. [PMID: 31339895 PMCID: PMC6655584 DOI: 10.1371/journal.pone.0217711] [Citation(s) in RCA: 45] [Impact Index Per Article: 7.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/05/2019] [Accepted: 05/16/2019] [Indexed: 12/25/2022] Open
Abstract
Major ecological realignments are already occurring in response to climate change. To be successful, conservation strategies now need to account for geographical patterns in traits sensitive to climate change, as well as climate threats to species-level diversity. As part of an effort to provide such information, we conducted a climate vulnerability assessment that included all anadromous Pacific salmon and steelhead (Oncorhynchus spp.) population units listed under the U.S. Endangered Species Act. Using an expert-based scoring system, we ranked 20 attributes for the 28 listed units and 5 additional units. Attributes captured biological sensitivity, or the strength of linkages between each listing unit and the present climate; climate exposure, or the magnitude of projected change in local environmental conditions; and adaptive capacity, or the ability to modify phenotypes to cope with new climatic conditions. Each listing unit was then assigned one of four vulnerability categories. Units ranked most vulnerable overall were Chinook (O. tshawytscha) in the California Central Valley, coho (O. kisutch) in California and southern Oregon, sockeye (O. nerka) in the Snake River Basin, and spring-run Chinook in the interior Columbia and Willamette River Basins. We identified units with similar vulnerability profiles using a hierarchical cluster analysis. Life history characteristics, especially freshwater and estuary residence times, interplayed with gradations in exposure from south to north and from coastal to interior regions to generate landscape-level patterns within each species. Nearly all listing units faced high exposures to projected increases in stream temperature, sea surface temperature, and ocean acidification, but other aspects of exposure peaked in particular regions. Anthropogenic factors, especially migration barriers, habitat degradation, and hatchery influence, have reduced the adaptive capacity of most steelhead and salmon populations. Enhancing adaptive capacity is essential to mitigate for the increasing threat of climate change. Collectively, these results provide a framework to support recovery planning that considers climate impacts on the majority of West Coast anadromous salmonids.
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Affiliation(s)
- Lisa G. Crozier
- Northwest Fisheries Science Center, National Marine Fisheries Service, National Oceanic and Atmospheric Administration, Seattle, Washington, United States of America
- * E-mail:
| | - Michelle M. McClure
- Northwest Fisheries Science Center, National Marine Fisheries Service, National Oceanic and Atmospheric Administration, Seattle, Washington, United States of America
| | - Tim Beechie
- Northwest Fisheries Science Center, National Marine Fisheries Service, National Oceanic and Atmospheric Administration, Seattle, Washington, United States of America
| | - Steven J. Bograd
- Southwest Fisheries Science Center, National Marine Fisheries Service, National Oceanic and Atmospheric Administration, Monterey, California, United States of America
| | - David A. Boughton
- Southwest Fisheries Science Center, National Marine Fisheries Service, National Oceanic and Atmospheric Administration, Santa Cruz, California, United States of America
| | - Mark Carr
- Department of Ecology and Evolutionary Biology, University of California, Santa Cruz, California, United States of America
| | - Thomas D. Cooney
- Northwest Fisheries Science Center, National Marine Fisheries Service, National Oceanic and Atmospheric Administration, Seattle, Washington, United States of America
| | - Jason B. Dunham
- Forest & Rangeland Ecosystem Science Center, U.S. Geological Survey, Corvallis, Oregon, United States of America
| | - Correigh M. Greene
- Northwest Fisheries Science Center, National Marine Fisheries Service, National Oceanic and Atmospheric Administration, Seattle, Washington, United States of America
| | - Melissa A. Haltuch
- Northwest Fisheries Science Center, National Marine Fisheries Service, National Oceanic and Atmospheric Administration, Seattle, Washington, United States of America
| | - Elliott L. Hazen
- Southwest Fisheries Science Center, National Marine Fisheries Service, National Oceanic and Atmospheric Administration, Monterey, California, United States of America
| | - Damon M. Holzer
- Northwest Fisheries Science Center, National Marine Fisheries Service, National Oceanic and Atmospheric Administration, Seattle, Washington, United States of America
| | - David D. Huff
- Northwest Fisheries Science Center, National Marine Fisheries Service, National Oceanic and Atmospheric Administration, Seattle, Washington, United States of America
| | - Rachel C. Johnson
- Southwest Fisheries Science Center, National Marine Fisheries Service, National Oceanic and Atmospheric Administration, Santa Cruz, California, United States of America
- Center for Watershed Sciences, University of California, Davis, California, United States of America
| | - Chris E. Jordan
- Northwest Fisheries Science Center, National Marine Fisheries Service, National Oceanic and Atmospheric Administration, Seattle, Washington, United States of America
| | - Isaac C. Kaplan
- Northwest Fisheries Science Center, National Marine Fisheries Service, National Oceanic and Atmospheric Administration, Seattle, Washington, United States of America
| | - Steven T. Lindley
- Southwest Fisheries Science Center, National Marine Fisheries Service, National Oceanic and Atmospheric Administration, Santa Cruz, California, United States of America
| | - Nathan J. Mantua
- Southwest Fisheries Science Center, National Marine Fisheries Service, National Oceanic and Atmospheric Administration, Santa Cruz, California, United States of America
| | - Peter B. Moyle
- Department of Wildlife, Fish and Conservation Biology, University of California, Davis, California, United States of America
| | - James M. Myers
- Northwest Fisheries Science Center, National Marine Fisheries Service, National Oceanic and Atmospheric Administration, Seattle, Washington, United States of America
| | - Mark W. Nelson
- ECS Federal, Inc. Under Contract to Office of Sustainable Fisheries, National Marine Fisheries Service, National Oceanic and Atmospheric Administration, Silver Spring, Maryland, United States of America
| | - Brian C. Spence
- Southwest Fisheries Science Center, National Marine Fisheries Service, National Oceanic and Atmospheric Administration, Santa Cruz, California, United States of America
| | - Laurie A. Weitkamp
- Northwest Fisheries Science Center, National Marine Fisheries Service, National Oceanic and Atmospheric Administration, Seattle, Washington, United States of America
| | - Thomas H. Williams
- Southwest Fisheries Science Center, National Marine Fisheries Service, National Oceanic and Atmospheric Administration, Santa Cruz, California, United States of America
| | - Ellen Willis-Norton
- Department of Ecology and Evolutionary Biology, University of California, Santa Cruz, California, United States of America
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22
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Hossain MA, Kujala H, Bland LM, Burgman M, Lahoz‐Monfort JJ. Assessing the impacts of uncertainty in climate‐change vulnerability assessments. DIVERS DISTRIB 2019. [DOI: 10.1111/ddi.12936] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022] Open
Affiliation(s)
- Md Anwar Hossain
- School of BioSciences The University of Melbourne Parkville Victoria Australia
| | - Heini Kujala
- School of BioSciences The University of Melbourne Parkville Victoria Australia
| | - Lucie M. Bland
- Centre for Integrative Ecology, School of Life and Environmental Sciences Deakin University Burwood Victoria Australia
| | - Mark Burgman
- Centre for Environmental Policy Imperial College London London UK
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23
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Ahmadi M, Hemami MR, Kaboli M, Malekian M, Zimmermann NE. Extinction risks of a Mediterranean neo-endemism complex of mountain vipers triggered by climate change. Sci Rep 2019; 9:6332. [PMID: 31004118 PMCID: PMC6474857 DOI: 10.1038/s41598-019-42792-9] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/31/2018] [Accepted: 04/04/2019] [Indexed: 01/13/2023] Open
Abstract
Climate change is among the most important drivers of biodiversity decline through shift or shrinkage in suitable habitat of species. Mountain vipers of the genus Montivipera are under extreme risk from climate changes given their evolutionary history and geographic distribution. In this study, we divided all Montivipera species into three phylogenetic-geographic Montivipera clades (PGMC; Bornmuelleri, Raddei and Xanthina) and applied an ensemble ecological niche modelling (ENM) approach under different climatic scenarios to assess changes in projected suitable habitats of these species. Based on the predicted range losses, we assessed the projected extinction risk of the species relative to IUCN Red List Criteria. Our result revealed a strong decline in suitable habitats for all PGMCs (63.8%, 79.3% and 96.8% for Xanthina, Raddei and Bornmuelleri, respectively, by 2070 and under 8.5 RCP scenario) with patterns of altitudinal range shifts in response to projected climate change. We found that the mountains close to the Mediterranean Sea are exposed to the highest threats in the future (84.6 ± 9.1 percent range loss). We also revealed that disjunct populations of Montivipera will be additionally highly isolated and fragmented in the future. We argue that leveraging climate niche projections into the risk assessment provides the opportunity to implement IUCN criteria and better assess forthcoming extinction risks of species.
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Affiliation(s)
- Mohsen Ahmadi
- Department of Natural Resources, Isfahan University of Technology, Isfahan, 8415683111, Iran
| | - Mahmoud-Reza Hemami
- Department of Natural Resources, Isfahan University of Technology, Isfahan, 8415683111, Iran.
| | - Mohammad Kaboli
- Department of Environmental Sciences, Faculty of Natural Resources, University of Tehran, Karaj, Iran
| | - Mansoureh Malekian
- Department of Natural Resources, Isfahan University of Technology, Isfahan, 8415683111, Iran
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24
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de los Ríos C, Watson JE, Butt N. Persistence of methodological, taxonomical, and geographical bias in assessments of species' vulnerability to climate change: A review. Glob Ecol Conserv 2018. [DOI: 10.1016/j.gecco.2018.e00412] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/28/2022] Open
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