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Yao L, He M, Jiang S, Li X, Shui B. Spatiotemporal Characteristics of Bacterial Communities in Estuarine Mangrove Sediments in Zhejiang Province, China. Microorganisms 2025; 13:859. [PMID: 40284696 PMCID: PMC12029902 DOI: 10.3390/microorganisms13040859] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/26/2025] [Revised: 03/30/2025] [Accepted: 04/06/2025] [Indexed: 04/29/2025] Open
Abstract
Mangrove forests are intertidal ecosystems that harbor diverse microbial communities essential for biogeochemical cycles and energy flow. This study investigated the seasonal and spatial patterns of bacterial communities in the artificially introduced mangrove sediments of the Ao River estuary using 16S rRNA gene amplicon high-throughput sequencing. Alpha diversity analyses indicated that the bacterial community diversity in the mangrove sediments of the Ao River estuary was similar to those of natural-formed mangroves, with the Shannon index ranging from 5.16 to 6.54, which was significantly higher in winter compared to other seasons. The dominant bacterial phyla included Proteobacteria (43.65%), Actinobacteria (11.55%), Desulfobacterota (11.16%), and Bacteroidetes (5.52%), while beta diversity analysis revealed substantial differences in bacterial community structure across different seasons and regions. For instance, the relative abundance of Woeseiaceae and Bacteroidota during the summer was significantly higher than that observed in other seasons. And the relative abundance of Bacillaceae in autumn and winter increased by one order of magnitude compared to spring and summer. Woeseiaceae, Desulfobulbaceae, Thermoanaerobaculaceae, and Sva1033 (family of Desulfobacterota) exhibited significantly higher relative abundance in the unvegetated area, whereas Bacillaceae and S085 (family of Chloroflexi) demonstrated greater abundance in the mangrove area. Seasonal variations in bacterial community structure are primarily attributed to changes in environmental factors, including temperature and salinity. Regional differences in bacterial community structure are primarily associated with environmental stressors, such as wave action, fluctuations in salinity, and organic matter content, which are further complicated by seasonal changes. This study is significant for understanding the microbial diversity and seasonal dynamics of estuarine mangrove wetlands, and it contributes to the assessment of mangrove wetland restoration efforts in Zhejiang Province, providing important guidance for the development of strategies to maintain the health of mangrove ecosystems in the future.
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Affiliation(s)
- Liqin Yao
- Fisheries College, Zhejiang Ocean University, Zhoushan 316022, China; (L.Y.); (S.J.)
| | - Maoqiu He
- Fisheries College, Zhejiang Ocean University, Zhoushan 316022, China; (L.Y.); (S.J.)
- Fujian Key Laboratory of Marine Carbon Sequestration, Xiamen University, Xiamen 361000, China
| | - Shoudian Jiang
- Fisheries College, Zhejiang Ocean University, Zhoushan 316022, China; (L.Y.); (S.J.)
| | - Xiangfu Li
- State Key Laboratory of Tropical Oceanography, South China Sea Institute of Oceanology, Chinese Academy of Sciences, Guangzhou 510260, China;
| | - Bonian Shui
- Fisheries College, Zhejiang Ocean University, Zhoushan 316022, China; (L.Y.); (S.J.)
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He Y, Fang C, Zeng Z, Fu B, Cui Z, Wang J, Yang H. Screening and isolation of polyethylene microplastic degrading bacteria from mangrove sediments in southern China. THE SCIENCE OF THE TOTAL ENVIRONMENT 2025; 962:178488. [PMID: 39813845 DOI: 10.1016/j.scitotenv.2025.178488] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/13/2024] [Revised: 12/23/2024] [Accepted: 01/10/2025] [Indexed: 01/18/2025]
Abstract
Mangrove sediments in southern China are a large reservoir for microplastics (MPs). In particular, polyethylene microplastics (PE-MPs) are environmentally toxic and have accumulated in large quantities in these sediments, posing a potential threat to the overall mangrove and the organisms that inhabit it. We screened sediments from 5 mangrove sites and identified a potential source of PE-MP degrading bacteria. We purified the bacterial strains Acinetobacter venetianus E1-1, Serratia marcescens E1-2, Chryseobacterium cucumeris E1-3 and Bacillus albus E1-4 from P1 that were able to reduce the mass of the 75 μm PE-MPs substrate by 3.67 to 6.59 %, respectively and use it as a sole carbon source. The degradation was accompanied by surface deformation of the MPs and introduction of polar oxygen-containing carbonyl and carboxylic acid functional groups thereby decreasing the hydrophobicity of the substrate. Whole-genome sequencing of S. marcescens E1-2, the most effective degrader, revealed it possesses a variety of enzymes and metabolic pathways related to PE degradation. Our results indicated that the PE-MP degrading bacteria isolated from screened mangrove sediments represent an effective strategy for in situ MP pollution remediation and uncovering mechanisms associated with PE degradation.
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Affiliation(s)
- Yinglin He
- College of Marine Sciences, South China Agricultural University, Guangzhou 510642, China; Zhongshan Innovation Center of South China Agricultural University, Zhongshan 528400, China
| | - Chang Fang
- College of Marine Sciences, South China Agricultural University, Guangzhou 510642, China; Zhongshan Innovation Center of South China Agricultural University, Zhongshan 528400, China
| | - Zeqian Zeng
- College of Marine Sciences, South China Agricultural University, Guangzhou 510642, China; Zhongshan Innovation Center of South China Agricultural University, Zhongshan 528400, China
| | - Bing Fu
- College of Marine Sciences, South China Agricultural University, Guangzhou 510642, China; Zhongshan Innovation Center of South China Agricultural University, Zhongshan 528400, China
| | - Ziyi Cui
- College of Marine Sciences, South China Agricultural University, Guangzhou 510642, China; Zhongshan Innovation Center of South China Agricultural University, Zhongshan 528400, China
| | - Jun Wang
- College of Marine Sciences, South China Agricultural University, Guangzhou 510642, China
| | - Huirong Yang
- College of Marine Sciences, South China Agricultural University, Guangzhou 510642, China; Zhongshan Innovation Center of South China Agricultural University, Zhongshan 528400, China.
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Liu Y, Chen S, Liang J, Song J, Sun Y, Liao R, Liang M, Cao H, Chen X, Wu Y, Bei L, Pan Y, Yan B, Li Y, Tao Y, Bu R, Gong B. Bacterial Community Structure and Environmental Driving Factors in the Surface Sediments of Six Mangrove Sites from Guangxi, China. Microorganisms 2024; 12:2607. [PMID: 39770809 PMCID: PMC11678403 DOI: 10.3390/microorganisms12122607] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/24/2024] [Revised: 11/27/2024] [Accepted: 12/13/2024] [Indexed: 01/11/2025] Open
Abstract
Mangroves, as blue carbon reservoirs, provide a unique habitat for supporting a variety of microorganisms. Among these, bacteria play crucial roles in the biogeochemical processes of mangrove sediments. However, little is known about their community composition, spatial distribution patterns, and environmental driving factors, particularly across the large geographical scales of mangrove wetlands. In this study, the composition and spatial distribution of the bacterial community structure and its response to fifteen physicochemical parameters (including temperature, pH, salinity, moisture, clay, silt, sand, organic carbon (OC), total nitrogen (TN), total phosphorus (TP), inorganic phosphorus (IP), organic phosphorus (OP), δ13C, δ15N, and carbon/nitrogen ratio (C/N ratio)) were characterized in 32 sampling locations of six different mangrove habitats from Guangxi, China, applying 16S rRNA gene high-throughput sequencing technology and correlation analysis. Our results indicated that the spatial distribution patterns in bacterial communities were significantly different among the six different mangrove sites, as evidenced by NMDS (non-metric multidimensional scaling), ANOSIM (analysis of similarity), and LDA (linear discriminant analysis) analysis. Composition analysis of bacterial communities showed that overall, Chloroflexi (8.3-31.6%), Proteobacteria (13.6-30.1%), Bacteroidota (5.0-24.6%), and Desulfobacterota (3.8-24.0%) were the most abundant bacterial phyla in the mangrove surface sediments. Redundancy analysis (RDA) further highlighted that salinity, δ13C, temperature, δ15N, and silt were the most critical environmental variables influencing the composition of bacterial communities across the whole mangrove samples. Notably, Chloroflexi, one of the most abundant bacterial phyla in the mangrove wetlands, displayed a significantly positive correlation with OC and a negative correlation with δ13C, suggesting its essential role in the degradation of terrestrial-derived organic carbon. These findings support the current understanding of the roles of the bacterial communities and their interactions with environmental factors in diverse mangrove ecosystems.
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Affiliation(s)
- Ying Liu
- Pinglu Canal and Beibu Gulf Coastal Ecosystem Observation and Research Station of Guangxi, Guangxi Key Laboratory of Beibu Gulf Marine Biodiversity Conservation, College of Marine Sciences, Beibu Gulf University, Qinzhou 535011, China; (Y.L.); (J.L.); (J.S.); (Y.S.); (R.L.); (M.L.); (H.C.); (X.C.); (Y.W.); (L.B.); (Y.P.); (B.Y.); (Y.L.); (Y.T.)
| | - Songze Chen
- Shenzhen Ecological and Environmental Monitoring Center of Guangdong Province, Shenzhen 518049, China;
| | - Jinyu Liang
- Pinglu Canal and Beibu Gulf Coastal Ecosystem Observation and Research Station of Guangxi, Guangxi Key Laboratory of Beibu Gulf Marine Biodiversity Conservation, College of Marine Sciences, Beibu Gulf University, Qinzhou 535011, China; (Y.L.); (J.L.); (J.S.); (Y.S.); (R.L.); (M.L.); (H.C.); (X.C.); (Y.W.); (L.B.); (Y.P.); (B.Y.); (Y.L.); (Y.T.)
| | - Jingjing Song
- Pinglu Canal and Beibu Gulf Coastal Ecosystem Observation and Research Station of Guangxi, Guangxi Key Laboratory of Beibu Gulf Marine Biodiversity Conservation, College of Marine Sciences, Beibu Gulf University, Qinzhou 535011, China; (Y.L.); (J.L.); (J.S.); (Y.S.); (R.L.); (M.L.); (H.C.); (X.C.); (Y.W.); (L.B.); (Y.P.); (B.Y.); (Y.L.); (Y.T.)
| | - Yue Sun
- Pinglu Canal and Beibu Gulf Coastal Ecosystem Observation and Research Station of Guangxi, Guangxi Key Laboratory of Beibu Gulf Marine Biodiversity Conservation, College of Marine Sciences, Beibu Gulf University, Qinzhou 535011, China; (Y.L.); (J.L.); (J.S.); (Y.S.); (R.L.); (M.L.); (H.C.); (X.C.); (Y.W.); (L.B.); (Y.P.); (B.Y.); (Y.L.); (Y.T.)
| | - Riquan Liao
- Pinglu Canal and Beibu Gulf Coastal Ecosystem Observation and Research Station of Guangxi, Guangxi Key Laboratory of Beibu Gulf Marine Biodiversity Conservation, College of Marine Sciences, Beibu Gulf University, Qinzhou 535011, China; (Y.L.); (J.L.); (J.S.); (Y.S.); (R.L.); (M.L.); (H.C.); (X.C.); (Y.W.); (L.B.); (Y.P.); (B.Y.); (Y.L.); (Y.T.)
| | - Mingzhong Liang
- Pinglu Canal and Beibu Gulf Coastal Ecosystem Observation and Research Station of Guangxi, Guangxi Key Laboratory of Beibu Gulf Marine Biodiversity Conservation, College of Marine Sciences, Beibu Gulf University, Qinzhou 535011, China; (Y.L.); (J.L.); (J.S.); (Y.S.); (R.L.); (M.L.); (H.C.); (X.C.); (Y.W.); (L.B.); (Y.P.); (B.Y.); (Y.L.); (Y.T.)
| | - Hongming Cao
- Pinglu Canal and Beibu Gulf Coastal Ecosystem Observation and Research Station of Guangxi, Guangxi Key Laboratory of Beibu Gulf Marine Biodiversity Conservation, College of Marine Sciences, Beibu Gulf University, Qinzhou 535011, China; (Y.L.); (J.L.); (J.S.); (Y.S.); (R.L.); (M.L.); (H.C.); (X.C.); (Y.W.); (L.B.); (Y.P.); (B.Y.); (Y.L.); (Y.T.)
| | - Xiuhao Chen
- Pinglu Canal and Beibu Gulf Coastal Ecosystem Observation and Research Station of Guangxi, Guangxi Key Laboratory of Beibu Gulf Marine Biodiversity Conservation, College of Marine Sciences, Beibu Gulf University, Qinzhou 535011, China; (Y.L.); (J.L.); (J.S.); (Y.S.); (R.L.); (M.L.); (H.C.); (X.C.); (Y.W.); (L.B.); (Y.P.); (B.Y.); (Y.L.); (Y.T.)
| | - Yuxia Wu
- Pinglu Canal and Beibu Gulf Coastal Ecosystem Observation and Research Station of Guangxi, Guangxi Key Laboratory of Beibu Gulf Marine Biodiversity Conservation, College of Marine Sciences, Beibu Gulf University, Qinzhou 535011, China; (Y.L.); (J.L.); (J.S.); (Y.S.); (R.L.); (M.L.); (H.C.); (X.C.); (Y.W.); (L.B.); (Y.P.); (B.Y.); (Y.L.); (Y.T.)
| | - Liting Bei
- Pinglu Canal and Beibu Gulf Coastal Ecosystem Observation and Research Station of Guangxi, Guangxi Key Laboratory of Beibu Gulf Marine Biodiversity Conservation, College of Marine Sciences, Beibu Gulf University, Qinzhou 535011, China; (Y.L.); (J.L.); (J.S.); (Y.S.); (R.L.); (M.L.); (H.C.); (X.C.); (Y.W.); (L.B.); (Y.P.); (B.Y.); (Y.L.); (Y.T.)
| | - Yuting Pan
- Pinglu Canal and Beibu Gulf Coastal Ecosystem Observation and Research Station of Guangxi, Guangxi Key Laboratory of Beibu Gulf Marine Biodiversity Conservation, College of Marine Sciences, Beibu Gulf University, Qinzhou 535011, China; (Y.L.); (J.L.); (J.S.); (Y.S.); (R.L.); (M.L.); (H.C.); (X.C.); (Y.W.); (L.B.); (Y.P.); (B.Y.); (Y.L.); (Y.T.)
| | - Baishu Yan
- Pinglu Canal and Beibu Gulf Coastal Ecosystem Observation and Research Station of Guangxi, Guangxi Key Laboratory of Beibu Gulf Marine Biodiversity Conservation, College of Marine Sciences, Beibu Gulf University, Qinzhou 535011, China; (Y.L.); (J.L.); (J.S.); (Y.S.); (R.L.); (M.L.); (H.C.); (X.C.); (Y.W.); (L.B.); (Y.P.); (B.Y.); (Y.L.); (Y.T.)
| | - Yunru Li
- Pinglu Canal and Beibu Gulf Coastal Ecosystem Observation and Research Station of Guangxi, Guangxi Key Laboratory of Beibu Gulf Marine Biodiversity Conservation, College of Marine Sciences, Beibu Gulf University, Qinzhou 535011, China; (Y.L.); (J.L.); (J.S.); (Y.S.); (R.L.); (M.L.); (H.C.); (X.C.); (Y.W.); (L.B.); (Y.P.); (B.Y.); (Y.L.); (Y.T.)
| | - Yun Tao
- Pinglu Canal and Beibu Gulf Coastal Ecosystem Observation and Research Station of Guangxi, Guangxi Key Laboratory of Beibu Gulf Marine Biodiversity Conservation, College of Marine Sciences, Beibu Gulf University, Qinzhou 535011, China; (Y.L.); (J.L.); (J.S.); (Y.S.); (R.L.); (M.L.); (H.C.); (X.C.); (Y.W.); (L.B.); (Y.P.); (B.Y.); (Y.L.); (Y.T.)
| | - Rongping Bu
- Pinglu Canal and Beibu Gulf Coastal Ecosystem Observation and Research Station of Guangxi, Guangxi Key Laboratory of Beibu Gulf Marine Biodiversity Conservation, College of Marine Sciences, Beibu Gulf University, Qinzhou 535011, China; (Y.L.); (J.L.); (J.S.); (Y.S.); (R.L.); (M.L.); (H.C.); (X.C.); (Y.W.); (L.B.); (Y.P.); (B.Y.); (Y.L.); (Y.T.)
| | - Bin Gong
- Pinglu Canal and Beibu Gulf Coastal Ecosystem Observation and Research Station of Guangxi, Guangxi Key Laboratory of Beibu Gulf Marine Biodiversity Conservation, College of Marine Sciences, Beibu Gulf University, Qinzhou 535011, China; (Y.L.); (J.L.); (J.S.); (Y.S.); (R.L.); (M.L.); (H.C.); (X.C.); (Y.W.); (L.B.); (Y.P.); (B.Y.); (Y.L.); (Y.T.)
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Solano JH, Moitinho MA, Chiaramonte JB, Bononi L, Packer AP, Melo IS, Dini-Andreote F, Tsai SM, Taketani RG. Organic matter decay and bacterial community succession in mangroves under simulated climate change scenarios. Braz J Microbiol 2024; 55:3353-3362. [PMID: 39028532 PMCID: PMC11711568 DOI: 10.1007/s42770-024-01455-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/22/2024] [Accepted: 07/06/2024] [Indexed: 07/20/2024] Open
Abstract
Mangroves are coastal environments that provide resources for adjacent ecosystems due to their high productivity, organic matter decomposition, and carbon cycling by microbial communities in sediments. Since the industrial revolution, the increase of Greenhouse Gases (GHG) released due to fossil fuel burning led to many environmental abnormalities such as an increase in average temperature and ocean acidification. Based on the hypothesis that climate change modifies the microbial diversity associated with decaying organic matter in mangrove sediments, this study aimed to evaluate the microbial diversity under simulated climate change conditions during the litter decomposition process and the emission of GHG. Thus, microcosms containing organic matter from the three main plant species found in mangroves throughout the State of São Paulo, Brazil (Rhizophora mangle, Laguncularia racemosa, and Avicennia schaueriana) were incubated simulating climate changes (increase in temperature and pH). The decay rate was higher in the first seven days of incubation, but the differences between the simulated treatments were minor. GHG fluxes were higher in the first ten days and higher in samples under increased temperature. The variation in time resulted in substantial impacts on α-diversity and community composition, initially with a greater abundance of Gammaproteobacteria for all plant species despite the climate conditions variations. The PCoA analysis reveals the chronological sequence in β-diversity, indicating the increase of Deltaproteobacteria at the end of the process. The GHG emission varied in function of the organic matter source with an increase due to the elevated temperature, concurrent with the rise in the Deltaproteobacteria population. Thus, these results indicate that under the expected climate change scenario for the end of the century, the decomposition rate and GHG emissions will be potentially higher, leading to a harmful feedback loop of GHG production. This process can happen independently of an impact on the bacterial community structure due to these changes.
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Affiliation(s)
- Juanita H Solano
- Brazilian Agricultural. Research Corporation, Embrapa Environment, SP 340. Highway-Km 127.5, Jaguariúna, SP, 13820-000, Brazil
- College of Agriculture Luiz de Queiroz, University of São Paulo, Pádua Dias Avenue, 11, Piracicaba, SP, 13418-900, Brazil
| | - Marta A Moitinho
- Brazilian Agricultural. Research Corporation, Embrapa Environment, SP 340. Highway-Km 127.5, Jaguariúna, SP, 13820-000, Brazil
- College of Agriculture Luiz de Queiroz, University of São Paulo, Pádua Dias Avenue, 11, Piracicaba, SP, 13418-900, Brazil
| | - Josiane B Chiaramonte
- Brazilian Agricultural. Research Corporation, Embrapa Environment, SP 340. Highway-Km 127.5, Jaguariúna, SP, 13820-000, Brazil
- College of Agriculture Luiz de Queiroz, University of São Paulo, Pádua Dias Avenue, 11, Piracicaba, SP, 13418-900, Brazil
| | - Laura Bononi
- Brazilian Agricultural. Research Corporation, Embrapa Environment, SP 340. Highway-Km 127.5, Jaguariúna, SP, 13820-000, Brazil
- College of Agriculture Luiz de Queiroz, University of São Paulo, Pádua Dias Avenue, 11, Piracicaba, SP, 13418-900, Brazil
| | - Ana Paula Packer
- Brazilian Agricultural. Research Corporation, Embrapa Environment, SP 340. Highway-Km 127.5, Jaguariúna, SP, 13820-000, Brazil
| | - Itamar S Melo
- Brazilian Agricultural. Research Corporation, Embrapa Environment, SP 340. Highway-Km 127.5, Jaguariúna, SP, 13820-000, Brazil
| | - Francisco Dini-Andreote
- Department of Plant Science and Huck Institutes of the Life Sciences, The Pennsylvania State University, University Park, PA, USA
| | - Siu Mui Tsai
- Center for Nuclear Energy in Agriculture, University of São Paulo, Piracicaba, SP, Brazil
| | - Rodrigo G Taketani
- College of Agriculture Luiz de Queiroz, University of São Paulo, Pádua Dias Avenue, 11, Piracicaba, SP, 13418-900, Brazil.
- Centre for Mineral Technology, CETEM, MCTIC Ministry of Science, Technology, Innovation and Communication, Av. Pedro Calmon, 900, Cidade Universitária, Ilha do Fundão, Rio de Janeiro, 21941-908, Brazil.
- Sustainable Agriculture Sciences, Rothamsted Research, West Common, Harpenden, AL5 2JQ, UK.
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Augusthy S, Nizam A, Kumar A. The diversity, drivers, consequences and management of plant invasions in the mangrove ecosystems. THE SCIENCE OF THE TOTAL ENVIRONMENT 2024; 945:173851. [PMID: 38871312 DOI: 10.1016/j.scitotenv.2024.173851] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/20/2023] [Revised: 06/05/2024] [Accepted: 06/06/2024] [Indexed: 06/15/2024]
Abstract
Mangrove ecosystems, which occupy intertidal environments across tropical and subtropical regions, provide crucial ecosystem services, such as protecting the coastal areas by reducing the impact of cyclones, storms, and tidal waves. Anthropogenic activities such as human settlements, deforestation, pollution, and climate change have increased the risk of biological invasions in mangrove habitats. Plant species can be introduced to mangrove habitats via anthropogenic means, such as trade and transportation, urbanisation, and agriculture, as well as through natural processes like wind, floods, cyclones, and animal-assisted seed dispersal. Additionally, some native plants can become invasive due to the changes in the mangrove ecosystem. Invasive species can significantly affect coastal ecosystems by out-competing native flora for resources, thereby altering fundamental properties, functions, and ecosystem services of the mangrove forests. The successful establishment of invasive species depends on a complex interplay of factors involving the biological attributes of the invading species and the ecological dynamics of the invaded habitat. This review focuses on exploring the mechanisms of invasion, strategies used by invasive plants, the effects of invasive plants on mangrove habitats and their possible management strategies. Based on the literature, managing invasive species is possible by biological, chemical, or physical methods. Some non-native mangrove species introduced through restoration activities can often become more intrusive than native species. Therefore, restoration activities should prioritise avoiding the use of non-native plant species.
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Affiliation(s)
- Somitta Augusthy
- Department of Plant Science, School of Biological Sciences, Central University of Kerala, Kasaragod 671316, Kerala, India
| | - Ashifa Nizam
- Department of Plant Science, School of Biological Sciences, Central University of Kerala, Kasaragod 671316, Kerala, India
| | - Ajay Kumar
- Department of Plant Science, School of Biological Sciences, Central University of Kerala, Kasaragod 671316, Kerala, India.
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Ray K, Basak SK, Giri CK, Kotal HN, Mandal A, Chatterjee K, Saha S, Biswas B, Mondal S, Das I, Ghosh A, Bhadury P, Joshi R. Ecological restoration at pilot-scale employing site-specific rationales for small-patch degraded mangroves in Indian Sundarbans. Sci Rep 2024; 14:12952. [PMID: 38839775 PMCID: PMC11153218 DOI: 10.1038/s41598-024-63281-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/18/2023] [Accepted: 05/27/2024] [Indexed: 06/07/2024] Open
Abstract
To date, degraded mangrove ecosystem restoration accomplished worldwide primarily aligns towards rehabilitation with monotypic plantations, while ecological restoration principles are rarely followed in these interventions. However, researchers admit that most of these initiatives' success rate is not appreciable often. An integrative framework of ecological restoration for degraded mangroves where site-specific observations could be scientifically rationalized, with co-located reference pristine mangroves as the target ecosystem to achieve is currently distinctively lacking. Through this experimental scale study, we studied the suitability of site-specific strategies to ecologically restore degraded mangrove patches vis-à-vis the conventional mono-species plantations in a highly vulnerable mangrove ecosystem in Indian Sundarbans. This comprehensive restoration framework was trialed in small discrete degraded mangrove patches spanning ~ 65 ha. Site-specific key restoration components applied are statistically validated through RDA analyses and Bayesian t-tests. 25 quantifiable metrics evaluate the restoration success of a ~ 3 ha degraded mangrove patch with Ridgeline distribution, Kolmogorov-Smirnov (K-S) tests, and Mahalanobis Distance (D2) measure to prove the site's near-equivalence to pristine reference in multiple ecosystem attributes. This restoration intervention irrevocably establishes the greater potential of this framework in the recovery of ecosystem functions and self-sustenance compared to that of predominant monoculture practices for vulnerable mangroves.
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Affiliation(s)
- Krishna Ray
- Environmental Biotechnology Group, Department of Botany, West Bengal State University, Berunanpukuria, Malikapur, Barasat, Kolkata, 700126, India.
| | - Sandip Kumar Basak
- Sarat Centenary College, Dhaniakhali, Hooghly, West Bengal, 712302, India.
| | - Chayan Kumar Giri
- Environmental Biotechnology Group, Department of Botany, West Bengal State University, Berunanpukuria, Malikapur, Barasat, Kolkata, 700126, India
| | - Hemendra Nath Kotal
- Environmental Biotechnology Group, Department of Botany, West Bengal State University, Berunanpukuria, Malikapur, Barasat, Kolkata, 700126, India
| | - Anup Mandal
- Environmental Biotechnology Group, Department of Botany, West Bengal State University, Berunanpukuria, Malikapur, Barasat, Kolkata, 700126, India
| | - Kiranmoy Chatterjee
- Department of Statistics, Bidhannagar College, Salt Lake City, Sector 1, Block EB, Kolkata, 700064, India
| | - Subhajit Saha
- Environmental Biotechnology Group, Department of Botany, West Bengal State University, Berunanpukuria, Malikapur, Barasat, Kolkata, 700126, India
| | - Biswajit Biswas
- Environmental Biotechnology Group, Department of Botany, West Bengal State University, Berunanpukuria, Malikapur, Barasat, Kolkata, 700126, India
| | - Sumana Mondal
- Environmental Biotechnology Group, Department of Botany, West Bengal State University, Berunanpukuria, Malikapur, Barasat, Kolkata, 700126, India
| | - Ipsita Das
- Environmental Biotechnology Group, Department of Botany, West Bengal State University, Berunanpukuria, Malikapur, Barasat, Kolkata, 700126, India
| | - Anwesha Ghosh
- Centre for Climate and Environmental Studies, Indian Institute of Science Education and Research Kolkata, Mohanpur, Nadia, West Bengal, 741246, India
| | - Punyasloke Bhadury
- Integrative Taxonomy and Microbial Ecology Research Group, Department of Biological Sciences, Indian Institute of Science Education and Research Kolkata, Mohanpur, Nadia, West Bengal, 741246, India
| | - Rahul Joshi
- Zoological Survey of India (ZSI), Prani Vigyan Bhawan, Block M, New Alipore, Kolkata, 700053, India
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da Silveira Bastos IMA, Cadamuro RD, de Freitas ACO, da Silva IT, Stoco PH, Sandjo LP, Treichel H, Fongaro G, Robl D, Steindel M. Diversity of fungal endophytes from mangrove plants of Santa Catarina Island, Brazil. Braz J Microbiol 2024; 55:1477-1487. [PMID: 38319531 PMCID: PMC11153381 DOI: 10.1007/s42770-023-01234-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/25/2023] [Accepted: 12/26/2023] [Indexed: 02/07/2024] Open
Abstract
The mangrove ecosystem plays a crucial role in preserving the biodiversity of plants, animals, and microorganisms that are essential for materials cycles. However, the exploration of endophytic fungi isolated from mangroves, particulary in Santa Catarina (SC, Brazil), remains limited. Therefore, the purpose of this study was to assess the biodiversity of endophytic fungi found in Avicennia schaueriana, Laguncularia racemosa, Rhizophora mangle, and Spartina alterniflora from two mangroves on the Island of Santa Catarina: one impacted by anthropic action (Itacorubi mangrove) and the other environmentally preserved (Ratones mangrove). Samplings were carried out between January 2020 and May 2021. Fungi were isolated from leaves, stems, and roots, identified, and clustered into groups through morphological characteristics. Further, a representative strain of each group was identified through ITS1 sequencing. A total of 373 isolates were obtained from plant tissues, of which 96 and 277 isolates were obtained from Itacorubi and Ratones mangroves, respectively. Molecular identification showed that the endophytic fungal community comprised at least 19 genera. The data on fungal community diversity revealed comparable diversity indices for genera in both mangroves. However, we observed differences in the total frequency of fungal genera between impacted (27.38%) and non-impacted (72.62%) mangroves. These findings suggest that anthropic activities in and around the Santa Catarina mangroves have had negative impact on the frequency of endophytic fungi. This emphasizes the reinforcing the significance of preserving these environments to ensure the maintenance of fungal community diversity.
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Affiliation(s)
| | - Rafael Dorighello Cadamuro
- Department of Microbiology, Immunology and Parasitology, Federal University of Santa Catarina, Florianópolis, SC, 88040-900, Brazil
| | - Ana Claudia Oliveira de Freitas
- Department of Microbiology, Immunology and Parasitology, Federal University of Santa Catarina, Florianópolis, SC, 88040-900, Brazil
| | - Izabella Thaís da Silva
- Department of Microbiology, Immunology and Parasitology, Federal University of Santa Catarina, Florianópolis, SC, 88040-900, Brazil
- Department of Pharmaceutical Sciences, Federal University Santa Catarina, Florianópolis, SC, 88040-900, Brazil
| | - Patrícia Hermes Stoco
- Department of Microbiology, Immunology and Parasitology, Federal University of Santa Catarina, Florianópolis, SC, 88040-900, Brazil
| | - Louis Pergaud Sandjo
- Department of Chemistry, Federal University of Santa Catarina, Florianópolis, SC, 88040-900, Brazil
| | - Helen Treichel
- Laboratory of Microbiology and Bioprocess, Federal University of Fronteira Sul, Erechim, RS, 99700-000, Brazil
| | - Gislaine Fongaro
- Department of Microbiology, Immunology and Parasitology, Federal University of Santa Catarina, Florianópolis, SC, 88040-900, Brazil
| | - Diogo Robl
- Department of Microbiology, Immunology and Parasitology, Federal University of Santa Catarina, Florianópolis, SC, 88040-900, Brazil
| | - Mário Steindel
- Department of Microbiology, Immunology and Parasitology, Federal University of Santa Catarina, Florianópolis, SC, 88040-900, Brazil.
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8
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Li X, Cheng X, Cheng K, Cai Z, Feng S, Zhou J. The influence of tide-brought nutrients on microbial carbon metabolic profiles of mangrove sediments. THE SCIENCE OF THE TOTAL ENVIRONMENT 2024; 906:167732. [PMID: 37827311 DOI: 10.1016/j.scitotenv.2023.167732] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/14/2023] [Revised: 10/06/2023] [Accepted: 10/08/2023] [Indexed: 10/14/2023]
Abstract
Mangrove ecosystems in the intertidal zone are continually affected by tidal inundation, but the impact of tidal-driven nutrient inputs upon bacterial communities and carbon metabolic features in mangrove surface sediments remains underexplored, and the differences in such impacts across backgrounds are not known. Here, two mangrove habitats with contrasting nutrient backgrounds in Shenzhen Bay and Daya Bay in Shenzhen City, China, respectively, were studied to investigate the effects of varying tidal nutrient inputs (especially dissolved inorganic nitrogen and PO43--P) on bacterial community composition and functioning in sediment via field sampling, 16S rDNA amplicon sequencing, and the quantitative potential of microbial element cycling. Results showed that tidal input increased Shenzhen Bay mangrove's eutrophication level whereas it maintained the Daya Bay mangrove's relatively oligotrophic status. Dissolved inorganic nitrogen and PO43--P levels in Shenzhen Bay were respectively 12.6-39.6 and 7.3-29.1 times higher than those in Daya Bay (p < 0.05). In terms of microbial features, Desulfobacteraceae was the dominant family in Shenzhen Bay, while the Anaerolineaceae family dominated in Daya Bay. Co-occurrence network analysis revealed more interconnected and complex microbial networks in Shenzhen Bay. The quantitative gene-chip analysis uncovered more carbon-related functional genes (including carbon degradation and fixation) enriched in Shenzhen Bay's sediment microbial communities than Daya Bay's. Partial least squares path modeling indicated that tidal behavior directly affected mangrove sediments' physicochemical characteristics, with cascading effects shaping microbial diversity and C-cycling function. Altogether, these findings demonstrate that how tides influence the microbial carbon cycle in mangrove sediments is co-correlated with the concentration of nutrient inputs and background status of sediment. This work offers an insightful lens for better understanding bacterial community structure and carbon metabolic features in mangrove sediments under their tidal influences. It provides a theoretical basis to better evaluate and protect mangroves in the context of global change.
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Affiliation(s)
- Xinyang Li
- Shenzhen Public Platform for Screening and Application of Marine Microbial Resources, Shenzhen International Graduate School, Tsinghua University, Shenzhen 518055, PR China
| | - Xueyu Cheng
- Shenzhen Public Platform for Screening and Application of Marine Microbial Resources, Shenzhen International Graduate School, Tsinghua University, Shenzhen 518055, PR China
| | - Keke Cheng
- Shenzhen Public Platform for Screening and Application of Marine Microbial Resources, Shenzhen International Graduate School, Tsinghua University, Shenzhen 518055, PR China
| | - Zhonghua Cai
- Shenzhen Public Platform for Screening and Application of Marine Microbial Resources, Shenzhen International Graduate School, Tsinghua University, Shenzhen 518055, PR China
| | - Shuying Feng
- Medical College, Henan University of Chinese Medicine, Zhengzhou, Henan 450056, PR China.
| | - Jin Zhou
- Shenzhen Public Platform for Screening and Application of Marine Microbial Resources, Shenzhen International Graduate School, Tsinghua University, Shenzhen 518055, PR China.
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9
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Fusi M, Booth JM, Marasco R, Merlino G, Garcias-Bonet N, Barozzi A, Garuglieri E, Mbobo T, Diele K, Duarte CM, Daffonchio D. Bioturbation Intensity Modifies the Sediment Microbiome and Biochemistry and Supports Plant Growth in an Arid Mangrove System. Microbiol Spectr 2022; 10:e0111722. [PMID: 35647697 PMCID: PMC9241789 DOI: 10.1128/spectrum.01117-22] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/02/2022] [Accepted: 05/06/2022] [Indexed: 01/04/2023] Open
Abstract
In intertidal systems, the type and role of interactions among sediment microorganisms, animals, plants and abiotic factors are complex and not well understood. Such interactions are known to promote nutrient provision and cycling, and their dynamics and relationships may be of particular importance in arid microtidal systems characterized by minimal nutrient input. Focusing on an arid mangrove ecosystem on the central Red Sea coast, we investigated the effect of crab bioturbation intensity (comparing natural and manipulated high levels of bioturbation intensity) on biogeochemistry and bacterial communities of mangrove sediments, and on growth performance of Avicennia marina, over a period of 16 months. Along with pronounced seasonal patterns with harsh summer conditions, in which high sediment salinity, sulfate and temperature, and absence of tidal flooding occur, sediment bacterial diversity and composition, sediment physicochemical conditions, and plant performance were significantly affected by crab bioturbation intensity. For instance, bioturbation intensity influenced components of nitrogen, carbon, and phosphate cycling, bacterial relative abundance (i.e., Bacteroidia, Proteobacteria and Rhodothermi) and their predicted functionality (i.e., chemoheterotrophy), likely resulting from enhanced metabolic activity of aerobic bacteria. The complex interactions among bacteria, animals, and sediment chemistry in this arid mangrove positively impact plant growth. We show that a comprehensive approach targeting multiple biological levels provides useful information on the ecological status of mangrove forests. IMPORTANCE Bioturbation is one of the most important processes that governs sediment biocenosis in intertidal systems. By facilitating oxygen penetration into anoxic layers, bioturbation alters the overall sediment biogeochemistry. Here, we investigate how high crab bioturbation intensity modifies the mangrove sediment bacterial community, which is the second largest component of mangrove sediment biomass and plays a significant role in major biogeochemical processes. We show that the increase in crab bioturbation intensity, by ameliorating the anoxic condition of mangrove sediment and promoting sediment bacterial diversity in favor of a beneficial bacterial microbiome, improves mangrove tree growth in arid environments. These findings have significant implications because they show how crabs, by farming the mangrove sediment, can enhance the overall capacity of the system to sustain mangrove growth, fighting climate change.
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Affiliation(s)
- Marco Fusi
- Division of Biological and Environmental Science and Engineering (BESE), Red Sea Research Center (RSRC), King Abdullah University of Science and Technology (KAUST), Thuwal, Saudi Arabia
- Centre for Conservation and Restoration Science, School of Applied Sciences, Edinburgh Napier University, Edinburgh, United Kingdom
| | - Jenny Marie Booth
- Division of Biological and Environmental Science and Engineering (BESE), Red Sea Research Center (RSRC), King Abdullah University of Science and Technology (KAUST), Thuwal, Saudi Arabia
- Coastal Research Group, Department of Zoology and Entomology, Rhodes University, Grahamstown, South Africa
| | - Ramona Marasco
- Division of Biological and Environmental Science and Engineering (BESE), Red Sea Research Center (RSRC), King Abdullah University of Science and Technology (KAUST), Thuwal, Saudi Arabia
| | - Giuseppe Merlino
- Division of Biological and Environmental Science and Engineering (BESE), Red Sea Research Center (RSRC), King Abdullah University of Science and Technology (KAUST), Thuwal, Saudi Arabia
| | - Neus Garcias-Bonet
- Division of Biological and Environmental Science and Engineering (BESE), Red Sea Research Center (RSRC), King Abdullah University of Science and Technology (KAUST), Thuwal, Saudi Arabia
- Computational Bioscience Research Center (CBRC), King Abdullah University of Science and Technology (KAUST), Thuwal, Saudi Arabia
| | - Alan Barozzi
- Division of Biological and Environmental Science and Engineering (BESE), Red Sea Research Center (RSRC), King Abdullah University of Science and Technology (KAUST), Thuwal, Saudi Arabia
| | - Elisa Garuglieri
- Division of Biological and Environmental Science and Engineering (BESE), Red Sea Research Center (RSRC), King Abdullah University of Science and Technology (KAUST), Thuwal, Saudi Arabia
| | - Tumeka Mbobo
- National Research Foundation-South African Institute for Aquatic Biodiversity Institute, Makhanda, South Africa
- South African National Biodiversity Institute, Kirstenbosch Research Centre, Cape Town, South Africa
- Centre for Invasion Biology, Department of Botany and Zoology, Stellenbosch University, Stellenbosch, South Africa
| | - Karen Diele
- Centre for Conservation and Restoration Science, School of Applied Sciences, Edinburgh Napier University, Edinburgh, United Kingdom
| | - Carlos M. Duarte
- Division of Biological and Environmental Science and Engineering (BESE), Red Sea Research Center (RSRC), King Abdullah University of Science and Technology (KAUST), Thuwal, Saudi Arabia
- Computational Bioscience Research Center (CBRC), King Abdullah University of Science and Technology (KAUST), Thuwal, Saudi Arabia
| | - Daniele Daffonchio
- Division of Biological and Environmental Science and Engineering (BESE), Red Sea Research Center (RSRC), King Abdullah University of Science and Technology (KAUST), Thuwal, Saudi Arabia
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10
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Naligama KN, Weerasinghe KE, Halmillawewa AP. Characterization of Bioactive Actinomycetes Isolated from Kadolkele Mangrove Sediments, Sri Lanka. Pol J Microbiol 2022; 71:191-204. [PMID: 35676828 PMCID: PMC9252147 DOI: 10.33073/pjm-2022-017] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/21/2021] [Accepted: 03/09/2022] [Indexed: 12/04/2022] Open
Abstract
Exploring untapped microbial potentials in previously uncharted environments has become crucial in discovering novel secondary metabolites and enzymes for biotechnological applications. Among prokaryotes, actinomycetes are well recognized for producing a vast range of secondary metabolites and extracellular enzymes. In the present study, we have used surface sediments from ‘Kadolkele’ mangrove ecosystem located in the Negombo lagoon area, Sri Lanka, to isolate actinomycetes with bioactive potentials. A total of six actinomycetes were isolated on modified-starch casein agar and characterized. The isolates were evaluated for their antibacterial activity against four selected bacterial strains and to produce extracellular enzymes: cellulase, amylase, protease, and lipase. Three out of the six isolates exhibited antibacterial activity against Staphylococcus aureus, Escherichia coli, and Bacillus cereus, but not against Listeria monocytogenes. Five strains could produce extracellular cellulase, while all six isolates exhibited amylase activity. Only three of the six isolates were positive for protease and lipase assays separately. Ac-1, Ac-2, and Ac-9, identified as Streptomyces spp. with the 16S rRNA gene sequencing, were used for pigment extraction using four different solvents. Acetone-extracted crude pigments of Ac-1 and Ac-2 were further used in well-diffusion assays, and growth inhibition of test bacteria was observed only with the crude pigment extract of Ac-2. Further, six different commercially available fabrics were dyed with crude pigments of Ac-1. The dyed fabrics retained the yellow color after acid, alkaline, and cold-water treatments suggesting the potential of the Ac-1 pigment to be used in biotechnological applications.
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Affiliation(s)
- Kishani N Naligama
- Department of Microbiology, Faculty of Science, University of Kelaniya, Kelaniya Sri Lanka
| | - Kavindi E Weerasinghe
- Department of Microbiology, Faculty of Science, University of Kelaniya, Kelaniya Sri Lanka
| | - Anupama P Halmillawewa
- Department of Microbiology, Faculty of Science, University of Kelaniya, Kelaniya Sri Lanka
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11
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Li L, Peng C, Yang Z, He Y, Liang M, Cao H, Qiu Q, Song J, Su Y, Gong B. Microbial communities in swamps of four mangrove reserves driven by interactions between physicochemical properties and microbe in the North Beibu Gulf, China. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2022; 29:37582-37597. [PMID: 35066825 DOI: 10.1007/s11356-021-18134-6] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/15/2021] [Accepted: 12/11/2021] [Indexed: 06/14/2023]
Abstract
Mangroves are distributed in coastal and estuarine regions and are characterized as a sink for terrestrial pollution. It is believed that complex interactions between environmental factors and microbial communities exist in mangrove swamps. However, little is known about environment-microbe interactions. There is a need to clarify some important environmental factors shaping microbial communities and how environmental factors interact with microbial assemblages in mangrove swamps. In the present study, physicochemical and microbial characteristics in four mangrove reserves (named ZZW, Qin, Bei, and GQ) in the North Beibu Gulf were determined. The interactions between environmental factors and microbial assemblages were analyzed with statistical methods in addition to CCA and RDA. Higher concentrations of sulfate (SO42--S) and Fe but lower concentrations of total phosphorus (TP) and NO3--N were detected in ZZW and Qin. Nutrient elements (NO3--N, NH4+-N, organic matter (OM), SO42--S, Fe, and TP) were more important than heavy metals for determining the microbial assemblages, and NO3--N was the most important factor. NO3--N, SO42--S, TP, and Fe formed a significant co-occurrence network in conjunction with some bacterial taxa, most of which were Proteobacteria. Notably, comparatively elevated amounts of sulfate-reducing bacteria (Desulfatibacillum, Desulfomonile, and Desulfatiglans) and sulfur-oxidizing bacteria (Thioprofundum and Thiohalophilus) were found in ZZW and Qin. The co-occurrence network suggested that some bacteria involved in sulfate reduction and sulfur oxidation drive the transformation of P and N, resulting in the reduction of P and N in mangrove swamps. Through the additional utilization of multivariate regression tree (MRT) and co-occurrence network analysis, our research provides a new perspective for understanding the interactions between environmental factors and microbial communities in mangroves.
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Affiliation(s)
- Lu Li
- The Guangxi Key Laboratory of Beibu Gulf Marine Biodiversity Conservation, College of Marine Sciences, Beibu Gulf University, Qinzhou, 535011, China
| | - Chunyan Peng
- The Guangxi Key Laboratory of Beibu Gulf Marine Biodiversity Conservation, College of Marine Sciences, Beibu Gulf University, Qinzhou, 535011, China
| | - Zicong Yang
- The Guangxi Key Laboratory of Beibu Gulf Marine Biodiversity Conservation, College of Marine Sciences, Beibu Gulf University, Qinzhou, 535011, China
| | - Yu He
- The Guangxi Key Laboratory of Beibu Gulf Marine Biodiversity Conservation, College of Marine Sciences, Beibu Gulf University, Qinzhou, 535011, China
| | - Meng Liang
- The Guangxi Key Laboratory of Beibu Gulf Marine Biodiversity Conservation, College of Marine Sciences, Beibu Gulf University, Qinzhou, 535011, China
| | - Hongmin Cao
- The Guangxi Key Laboratory of Beibu Gulf Marine Biodiversity Conservation, College of Marine Sciences, Beibu Gulf University, Qinzhou, 535011, China
| | - Qinghua Qiu
- The Guangxi Key Laboratory of Beibu Gulf Marine Biodiversity Conservation, College of Marine Sciences, Beibu Gulf University, Qinzhou, 535011, China
| | - Jingjing Song
- The Guangxi Key Laboratory of Beibu Gulf Marine Biodiversity Conservation, College of Marine Sciences, Beibu Gulf University, Qinzhou, 535011, China.
| | - Youlu Su
- Innovative Institute of Animal Healthy Breeding, Zhongkai University of Agriculture and Engineering, Guangzhou, 510225, China.
| | - Bin Gong
- The Guangxi Key Laboratory of Beibu Gulf Marine Biodiversity Conservation, College of Marine Sciences, Beibu Gulf University, Qinzhou, 535011, China.
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12
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Shah RM, Stephenson S, Crosswell J, Gorman D, Hillyer KE, Palombo EA, Jones OAH, Cook S, Bodrossy L, van de Kamp J, Walsh TK, Bissett A, Steven ADL, Beale DJ. Omics-based ecosurveillance uncovers the influence of estuarine macrophytes on sediment microbial function and metabolic redundancy in a tropical ecosystem. THE SCIENCE OF THE TOTAL ENVIRONMENT 2022; 809:151175. [PMID: 34699819 DOI: 10.1016/j.scitotenv.2021.151175] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/16/2021] [Revised: 10/18/2021] [Accepted: 10/19/2021] [Indexed: 06/13/2023]
Abstract
Vertical zonation within estuarine ecosystems can strongly influence microbial diversity and function by regulating competition, predation, and environmental stability. The degree to which microbial communities exhibit horizontal patterns through an estuary has received comparatively less attention. Here, we take a multi-omics ecosurveillance approach to study environmental gradients created by the transition between dominant vegetation types along a near pristine tropical river system (Wenlock River, Far North Queensland, Australia). The study sites included intertidal mudflats fringed by saltmarsh, mangrove or mixed soft substrata habitats. Collected sediments were analyzed for eukaryotes and prokaryotes using small sub-unit (SSU) rRNA gene amplicons to profile the relative taxonomic composition. Central carbon metabolism metabolites and other associated organic polar metabolites were analyzed using established metabolomics-based approaches, coupled with total heavy metals analysis. Eukaryotic taxonomic information was found to be more informative of habitat type. Bacterial taxonomy and community composition also showed habitat-specificity, with phyla Proteobacteria and Cyanobacteria strongly linked to mangroves and saltmarshes, respectively. In contrast, metabolite profiling was critical for understanding the biochemical pathways and expressed functional outputs in these systems that were tied to predicted microbial gene function (16S rRNA). A high degree of metabolic redundancy was observed in the bacterial communities, with the metabolomics data suggesting varying degrees of metabolic criticality based on habitat type. The predicted functions of the bacterial taxa combined with annotated metabolites accounted for the conservative perspective of microbial community redundancy against the putative metabolic pathway impacts in the metabolomics data. Coupling these data demonstrates that habitat-mediated estuarine gradients drive patterns of community diversity and metabolic function and highlights the real redundancy potential of habitat microbiomes. This information is useful as a point of comparison for these sensitive ecosystems and provides a framework for identifying potentially vulnerable or at-risk systems before they are significantly degraded.
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Affiliation(s)
- Rohan M Shah
- Land and Water, Commonwealth Scientific and Industrial Research Organisation, Dutton Park, QLD 4102, Australia; Department of Chemistry and Biotechnology, School of Science, Computing and Engineering Technologies, Swinburne University of Technology, Hawthorn, VIC 3122, Australia
| | - Sarah Stephenson
- Oceans and Atmosphere, Commonwealth Scientific and Industrial Research Organisation, Lucas Heights, NSW 2234, Australia
| | - Joseph Crosswell
- Oceans and Atmosphere, Commonwealth Scientific and Industrial Research Organisation, Dutton Park, QLD 4102, Australia
| | - Daniel Gorman
- Oceans and Atmosphere, Commonwealth Scientific and Industrial Research Organisation, Indian Ocean Marine Research Centre, Crawley, WA 6009, Australia
| | - Katie E Hillyer
- Land and Water, Commonwealth Scientific and Industrial Research Organisation, Dutton Park, QLD 4102, Australia
| | - Enzo A Palombo
- Department of Chemistry and Biotechnology, School of Science, Computing and Engineering Technologies, Swinburne University of Technology, Hawthorn, VIC 3122, Australia
| | - Oliver A H Jones
- Australian Centre for Research on Separation Science (ACROSS), School of Science, RMIT University, Bundoora West Campus, PO Box 71, Bundoora, VIC 3083, Australia
| | - Stephen Cook
- Land and Water, Commonwealth Scientific and Industrial Research Organisation, Berrimah, NT 0828, Australia
| | - Levente Bodrossy
- Oceans and Atmosphere, Commonwealth Scientific and Industrial Research Organisation, Battery Point, TAS 7004, Australia
| | - Jodie van de Kamp
- Oceans and Atmosphere, Commonwealth Scientific and Industrial Research Organisation, Battery Point, TAS 7004, Australia
| | - Thomas K Walsh
- Land and Water, Commonwealth Scientific and Industrial Research Organisation, Acton, ACT 2601, Australia
| | - Andrew Bissett
- Oceans and Atmosphere, Commonwealth Scientific and Industrial Research Organisation, Battery Point, TAS 7004, Australia
| | - Andrew D L Steven
- Oceans and Atmosphere, Commonwealth Scientific and Industrial Research Organisation, Dutton Park, QLD 4102, Australia
| | - David J Beale
- Land and Water, Commonwealth Scientific and Industrial Research Organisation, Dutton Park, QLD 4102, Australia.
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13
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Thomson T, Fusi M, Bennett-Smith MF, Prinz N, Aylagas E, Carvalho S, Lovelock CE, Jones BH, Ellis JI. Contrasting Effects of Local Environmental and Biogeographic Factors on the Composition and Structure of Bacterial Communities in Arid Monospecific Mangrove Soils. Microbiol Spectr 2022; 10:e0090321. [PMID: 34985338 PMCID: PMC8729789 DOI: 10.1128/spectrum.00903-21] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/13/2021] [Accepted: 12/11/2021] [Indexed: 12/23/2022] Open
Abstract
Mangrove forests are important biotic sinks of atmospheric CO2 and play an integral role in nutrient-cycling and decontamination of coastal waters, thereby mitigating climatic and anthropogenic stressors. These services are primarily regulated by the activity of the soil microbiome. To understand how environmental changes may affect this vital part of the ecosystem, it is key to understand the patterns that drive microbial community assembly in mangrove forest soils. High-throughput amplicon sequencing (16S rRNA) was applied on samples from arid Avicennia marina forests across different spatial scales from local to regional. Alongside conventional analyses of community ecology, microbial co-occurrence networks were assessed to investigate differences in composition and structure of the bacterial community. The bacterial community composition varied more strongly along an intertidal gradient within each mangrove forest, than between forests in different geographic regions (Australia/Saudi Arabia). In contrast, co-occurrence networks differed primarily between geographic regions, illustrating that the structure of the bacterial community is not necessarily linked to its composition. The local diversity in mangrove forest soils may have important implications for the quantification of biogeochemical processes and is important to consider when planning restoration activities. IMPORTANCE Mangrove ecosystems are increasingly being recognized for their potential to sequester atmospheric carbon, thereby mitigating the effects of anthropogenically driven greenhouse gas emissions. The bacterial community in the soils plays an important role in the breakdown and recycling of carbon and other nutrients. To assess and predict changes in carbon storage, it is important to understand how the bacterial community is shaped by its environment. Here, we compared the bacterial communities of mangrove forests on different spatial scales, from local within-forest to biogeographic comparisons. The bacterial community composition differed more between distinct intertidal zones of the same forest than between forests in distant geographic regions. The calculated network structure of theoretically interacting bacteria, however, differed most between the geographic regions. Our findings highlight the importance of local environmental factors in shaping the microbial soil community in mangroves and highlight a disconnect between community composition and structure in microbial soil assemblages.
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Affiliation(s)
- T. Thomson
- University of Waikato, School of Science, Tauranga, New Zealand
- King Abdullah University of Science and Technology (KAUST), Biological and Environmental Sciences and Engineering Division (BESE), Thuwal, Saudi Arabia
| | - M. Fusi
- King Abdullah University of Science and Technology (KAUST), Biological and Environmental Sciences and Engineering Division (BESE), Thuwal, Saudi Arabia
- School of Applied Sciences, Edinburgh Napier University, Edinburgh, United Kingdom
| | - M. F. Bennett-Smith
- King Abdullah University of Science and Technology (KAUST), Biological and Environmental Sciences and Engineering Division (BESE), Thuwal, Saudi Arabia
| | - N. Prinz
- University of Waikato, School of Science, Tauranga, New Zealand
| | - E. Aylagas
- King Abdullah University of Science and Technology (KAUST), Biological and Environmental Sciences and Engineering Division (BESE), Thuwal, Saudi Arabia
| | - S. Carvalho
- King Abdullah University of Science and Technology (KAUST), Biological and Environmental Sciences and Engineering Division (BESE), Thuwal, Saudi Arabia
| | - C. E. Lovelock
- School of Biological Sciences, The University of Queensland, St Lucida, Australia
| | - B. H. Jones
- King Abdullah University of Science and Technology (KAUST), Biological and Environmental Sciences and Engineering Division (BESE), Thuwal, Saudi Arabia
| | - J. I. Ellis
- University of Waikato, School of Science, Tauranga, New Zealand
- King Abdullah University of Science and Technology (KAUST), Biological and Environmental Sciences and Engineering Division (BESE), Thuwal, Saudi Arabia
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14
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Han M, Zhang L, Zhang N, Mao Y, Peng Z, Huang B, Zhang Y, Wang Z. Antibiotic resistome in a large urban-lake drinking water source in middle China: Dissemination mechanisms and risk assessment. JOURNAL OF HAZARDOUS MATERIALS 2022; 424:127745. [PMID: 34799156 DOI: 10.1016/j.jhazmat.2021.127745] [Citation(s) in RCA: 47] [Impact Index Per Article: 15.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/19/2021] [Revised: 10/29/2021] [Accepted: 11/08/2021] [Indexed: 06/13/2023]
Abstract
The increasing pollution of urban drinking water sources by antibiotic resistance genes (ARGs) threatens human health worldwide. However, the distribution and influencing factors of ARGs, especially how to reveal the risks of ARGs in this environment remains unclear. Hence, Chaohu Lake was selected as an example to investigate the characteristics of ARGs and explore the interactions among physicochemical factors, microorganisms, and ARGs by metagenomic approach. In this work, 75 ARG subtypes with an average of 30.4 × /Gb (ranging from 15.2 ×/Gb to 57.9 ×/Gb) were identified, and multidrug and bacA were most frequent in Chaohu Lake. Non-random co-occurrence patterns and potential host bacteria of ARGs were revealed through co-occurrence networks. Microbial community and mobile genetic elements (MGEs) were the major direct factors in ARG profiles. The dissemination of ARGs was mainly driven by plasmids. Considering the interactions among MGEs, human bacterial pathogens, and ARGs, antibiotic resistome risk index (ARRI) was proposed to manifest the risks of ARGs. Overall, our work systemically investigated the composition and associated factors of ARGs and built ARRI to estimate the potential risks of ARGs in a typical urban drinking water source, providing an intuitive indicator for managing similar lakes.
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Affiliation(s)
- Maozhen Han
- School of Life Science, Anhui Medical University, Hefei, Anhui 230032, China
| | - Lu Zhang
- Key Laboratory for Environment and Disaster Monitoring and Evaluation of Hubei, Innovation Academy for Precision Measurement Science and Technology, Chinese Academy of Science, Wuhan 430077, China; University of Chinese Academy of Sciences, Beijing 100049, China
| | - Na Zhang
- School of Life Science, Anhui Medical University, Hefei, Anhui 230032, China
| | - Yujie Mao
- School of Life Science, Anhui Medical University, Hefei, Anhui 230032, China
| | - Zhangjie Peng
- School of Life Science, Anhui Medical University, Hefei, Anhui 230032, China
| | - Binbin Huang
- School of Life Science, Anhui Medical University, Hefei, Anhui 230032, China
| | - Yan Zhang
- School of Life Sciences, Hefei Normal University, Hefei, Anhui 230601, China.
| | - Zhi Wang
- Key Laboratory for Environment and Disaster Monitoring and Evaluation of Hubei, Innovation Academy for Precision Measurement Science and Technology, Chinese Academy of Science, Wuhan 430077, China.
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15
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Ecological Role of Bacteria Involved in the Biogeochemical Cycles of Mangroves Based on Functional Genes Detected through GeoChip 5.0. mSphere 2022; 7:e0093621. [PMID: 35019668 PMCID: PMC8754168 DOI: 10.1128/msphere.00936-21] [Citation(s) in RCA: 27] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022] Open
Abstract
Mangroves provide a variety of ecosystem services and contribute greatly to the global biogeochemical cycle. Microorganisms play important roles in biogeochemical cycles and maintain the dynamic balance of mangroves. However, the roles of bacteria in the biogeochemical cycles of mangroves and their ecological distribution and functions remain largely uncharacterized. This study thus sought to analyze and compare the ecological distributions and potential roles of bacteria in typical mangroves using 16S rRNA gene amplicon sequencing and GeoChip. Interestingly, the bacterial community compositions were largely similar in the studied mangroves, including Shenzhen, Yunxiao, Zhanjiang, Hainan, Hongkong, Fangchenggang, and Beihai mangroves. Moreover, gamma-proteobacterium_uncultured and Woeseia were the most abundant microorganisms in the mangroves. Furthermore, most of the bacterial communities were significantly correlated with phosphorus levels (P < 0.05; −0.93 < R < 0.93), suggesting that this nutrient is a vital driver of bacterial community composition. Additionally, GeoChip analysis indicated that the functional genes amyA, narG, dsrA, and ppx were highly abundant in the studied mangroves, suggesting that carbon degradation, denitrification, sulfite reduction, and polyphosphate degradation are crucial processes in typical mangroves. Moreover, several genera were found to synergistically participate in biogeochemical cycles in mangroves. For instance, Neisseria, Ruegeria, Rhodococcus, Desulfotomaculum, and Gordonia were synergistically involved in the carbon, nitrogen, and sulfur cycles, whereas Neisseria and Treponema were synergistically involved in the nitrogen cycle and the sulfur cycle. Taken together, our findings provide novel insights into the ecological roles of bacteria in the biogeochemical cycles of mangroves. IMPORTANCE Bacteria have important functions in biogeochemical cycles, but studies on their function in an important ecosystem, mangroves, are still limited. Here, we investigated the ecological role of bacteria involved in biogeochemical cycles in seven representative mangroves of southern China. Furthermore, various functional genes from bacteria involved in biogeochemical cycles were identified by GeoChip 5.0. The functional genes associated with the carbon cycle (particularly carbon degradation) were the most abundant, suggesting that carbon degradation is the most active process in mangroves. Additionally, some high-abundance bacterial populations were found to synergistically mediate key biogeochemical cycles in the mangroves, including Neisseria, Pseudomonas, Treponema, Desulfotomaculum, and Nitrosospira. In a word, our study gives novel insights into the function of bacteria in biogeochemical cycles in mangroves.
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16
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Mai Z, Ye M, Wang Y, Foong SY, Wang L, Sun F, Cheng H. Characteristics of Microbial Community and Function With the Succession of Mangroves. Front Microbiol 2021; 12:764974. [PMID: 34950118 PMCID: PMC8689078 DOI: 10.3389/fmicb.2021.764974] [Citation(s) in RCA: 16] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/26/2021] [Accepted: 11/05/2021] [Indexed: 12/02/2022] Open
Abstract
In this study, 16S high-throughput and metagenomic sequencing analyses were employed to explore the changes in microbial community and function with the succession of mangroves (Sonneratia alba, Rhizophora apiculata, and Bruguiera parviflora) along the Merbok river estuary in Malaysia. The sediments of the three mangroves harbored their own unique dominant microbial taxa, whereas R. apiculata exhibited the highest microbial diversity. In general, Gammaproteobacteria, Actinobacteria, Alphaproteobacteria, Deltaproteobacteria, and Anaerolineae were the dominant microbial classes, but their abundances varied significantly among the three mangroves. Principal coordinates and redundancy analyses revealed that the specificity of the microbial community was highly correlated with mangrove populations and environmental factors. The results further showed that R. apiculata exhibited the highest carbon-related metabolism, coinciding with the highest organic carbon and microbial diversity. In addition, specific microbial taxa, such as Desulfobacterales and Rhizobiales, contributed the highest functional activities related to carbon metabolism, prokaryote carbon fixation, and methane metabolism. The present results provide a comprehensive understanding of the adaptations and functions of microbes in relation to environmental transition and mangrove succession in intertidal regions. High microbial diversity and carbon metabolism in R. apiculata might in turn facilitate and maintain the formation of climax mangroves in the middle region of the Merbok river estuary.
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Affiliation(s)
- Zhimao Mai
- State Key Laboratory of Tropical Oceanography, Key Laboratory of Tropical Marine Bio-Resources and Ecology, South China Sea Institute of Oceanology, Chinese Academy of Sciences, Guangzhou, China.,Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou), Guangzhou, China
| | - Mai Ye
- State Key Laboratory of Tropical Oceanography, Key Laboratory of Tropical Marine Bio-Resources and Ecology, South China Sea Institute of Oceanology, Chinese Academy of Sciences, Guangzhou, China.,Guangdong Provincial Academy of Environmental Science, Guangzhou, China
| | - Youshao Wang
- State Key Laboratory of Tropical Oceanography, Key Laboratory of Tropical Marine Bio-Resources and Ecology, South China Sea Institute of Oceanology, Chinese Academy of Sciences, Guangzhou, China.,Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou), Guangzhou, China
| | - Swee Yeok Foong
- School of Biological Sciences, Universiti Sains Malaysia, Penang, Malaysia
| | - Lin Wang
- State Key Laboratory of Tropical Oceanography, Key Laboratory of Tropical Marine Bio-Resources and Ecology, South China Sea Institute of Oceanology, Chinese Academy of Sciences, Guangzhou, China.,Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou), Guangzhou, China
| | - Fulin Sun
- State Key Laboratory of Tropical Oceanography, Key Laboratory of Tropical Marine Bio-Resources and Ecology, South China Sea Institute of Oceanology, Chinese Academy of Sciences, Guangzhou, China.,Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou), Guangzhou, China.,Daya Bay Marine Biology Research Station, Chinese Academy of Sciences, Shenzhen, China
| | - Hao Cheng
- State Key Laboratory of Tropical Oceanography, Key Laboratory of Tropical Marine Bio-Resources and Ecology, South China Sea Institute of Oceanology, Chinese Academy of Sciences, Guangzhou, China.,Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou), Guangzhou, China
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17
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Yang Z, Shi Y, Wang J, Wang L, Li X, Zhang D. Unique functional responses of fungal communities to various environments in the mangroves of the Maowei Sea in Guangxi, China. MARINE POLLUTION BULLETIN 2021; 173:113091. [PMID: 34715434 DOI: 10.1016/j.marpolbul.2021.113091] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/06/2021] [Revised: 09/01/2021] [Accepted: 10/19/2021] [Indexed: 06/13/2023]
Abstract
Fungi are important compartments of microbial communities of mangroves. Their diversity might be influenced by their habitat environment. This study analyzed the distribution and function of fungal communities in the sediments and plant samples from mangrove ecosystem of the Maowei Sea area in Guangxi, China. The results showed that phytopathogenic fungi Cladosporium (17.00%) was mainly observed in the sediments from the protected zone, while endophytic fungi Alternaria (9.22%) and Acremonium (6.09%) were only observed in the sediments from wharf. The fungi in the sediments from village and park were mainly consisted of high-activity endophytes and fungi related to lignin-degrading, respectively. Acaulospora and Aspergillus with higher relative abundance discovered in plant tissues could help plant growth. Cirrenalia (37.66%) and Lignincola (26.73%) with high-activity for lignin-degrading were discovered in decayed leaves. The distribution and function of fungi were highly dependent on the environment settings, thus the fungi can be used as indicators for monitoring the environmental change of mangrove ecosystems.
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Affiliation(s)
- Zonglin Yang
- Key Laboratory of Marine Chemistry Theory and Technology (Ocean University of China), Ministry of Education, Qingdao 266100, Shandong, PR China; College of Chemistry and Chemical Engineering, Ocean University of China, Qingdao 266100, Shandong, PR China
| | - Yaqi Shi
- Key Laboratory of Marine Chemistry Theory and Technology (Ocean University of China), Ministry of Education, Qingdao 266100, Shandong, PR China; College of Chemistry and Chemical Engineering, Ocean University of China, Qingdao 266100, Shandong, PR China
| | - Jun Wang
- College of Marine Life Sciences, Ocean University of China, Qingdao 266003, Shandong, PR China
| | - Le Wang
- Key Laboratory of Marine Chemistry Theory and Technology (Ocean University of China), Ministry of Education, Qingdao 266100, Shandong, PR China; College of Chemistry and Chemical Engineering, Ocean University of China, Qingdao 266100, Shandong, PR China
| | - Xianguo Li
- Key Laboratory of Marine Chemistry Theory and Technology (Ocean University of China), Ministry of Education, Qingdao 266100, Shandong, PR China; College of Chemistry and Chemical Engineering, Ocean University of China, Qingdao 266100, Shandong, PR China
| | - Dahai Zhang
- Key Laboratory of Marine Chemistry Theory and Technology (Ocean University of China), Ministry of Education, Qingdao 266100, Shandong, PR China; College of Chemistry and Chemical Engineering, Ocean University of China, Qingdao 266100, Shandong, PR China.
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18
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Lin G, He Y, Lu J, Chen H, Feng J. Seasonal variations in soil physicochemical properties and microbial community structure influenced by Spartina alterniflora invasion and Kandelia obovata restoration. THE SCIENCE OF THE TOTAL ENVIRONMENT 2021; 797:149213. [PMID: 34311375 DOI: 10.1016/j.scitotenv.2021.149213] [Citation(s) in RCA: 16] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/10/2021] [Revised: 06/05/2021] [Accepted: 07/19/2021] [Indexed: 06/13/2023]
Abstract
Spartina alterniflora invasion has initiated one of the greatest changes to occur in coastal wetlands in China, and ecological replacement using mangrove species such as Kandelia obovata is an effective method for controlling these invasions. The effects of S. alterniflora invasions and subsequent K. obovata restorations on soil microbial community structures in different seasons are still not fully understood. In this study, soil samples were collected from six vegetation types (unvegetated mudflat, invasive S. alterniflora stands, one-/eight-/ten-year K. obovata restoration areas, and native mature K. obovata forests) in summer and winter. The variations in the soil microbial community structure between the vegetation types across two seasons were then characterized based on 16S rRNA gene sequencing, and the physicochemical properties that shaped the microbial communities were also determined. The invasion and restoration processes significantly influenced microbial community diversity, composition, and putative functions in different seasonal patterns. Microbial communities from a ten-year restoration area and a native mature K. obovata area shared more similarities than other areas. In both seasons, the key environmental factors driving microbial community included total carbon and nitrogen content, the ratio of carbon to nitrogen, and the soil pH. In addition, total sulfur and total phosphorus contents significantly contributed to structuring microbial communities in summer and winter, respectively. This study provides insights into microbial diversity, composition, and functional profiles in association with physicochemical impacts, with the aim of understanding microbial ecological functions during the invasion and restoration processes in wetland ecosystems.
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Affiliation(s)
- Genmei Lin
- School of Marine Sciences, Sun Yat-sen University, Zhuhai 519082, China
| | - Yongni He
- School of Marine Sciences, Sun Yat-sen University, Zhuhai 519082, China
| | - Jianguo Lu
- School of Marine Sciences, Sun Yat-sen University, Zhuhai 519082, China; Southern Marine Science and Engineering Guangdong Laboratory (Zhuhai), Zhuhai 519000, China
| | - Hui Chen
- College of Life Science, Yangtze University, Jingzhou 434025, China
| | - Jianxiang Feng
- School of Marine Sciences, Sun Yat-sen University, Zhuhai 519082, China; Southern Marine Science and Engineering Guangdong Laboratory (Zhuhai), Zhuhai 519000, China; Guangdong Provincial Key Laboratory of Marine Resources and Coastal Engineering, Zhuhai 519082, China.
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19
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Tavares TCL, Bezerra WM, Normando LRO, Rosado AS, Melo VMM. Brazilian Semi-Arid Mangroves-Associated Microbiome as Pools of Richness and Complexity in a Changing World. Front Microbiol 2021; 12:715991. [PMID: 34512595 PMCID: PMC8427804 DOI: 10.3389/fmicb.2021.715991] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/27/2021] [Accepted: 08/06/2021] [Indexed: 01/04/2023] Open
Abstract
Mangrove microbiomes play an essential role in the fate of mangroves in our changing planet, but the factors regulating the biogeographical distribution of mangrove microbial communities remain essentially vague. This paper contributes to our understanding of mangrove microbiomes distributed along three biogeographical provinces and ecoregions, covering the exuberant mangroves of Amazonia ecoregion (North Brazil Shelf) as well as mangroves located in the southern limit of distribution (Southeastern ecoregion, Warm Temperate Southwestern Atlantic) and mangroves localized on the drier semi-arid coast (Northeastern ecoregion, Tropical Southwestern Atlantic), two important ecotones where poleward and landward shifts, respectively, are expected to occur related to climate change. This study compared the microbiomes associated with the conspicuous red mangrove (Rhizophora mangle) root soils encompassing soil properties, latitudinal factors, and amplicon sequence variants of 105 samples. We demonstrated that, although the northern and southern sites are over 4,000 km apart, and despite R. mangle genetic divergences between north and south populations, their microbiomes resemble each other more than the northern and northeastern neighbors. In addition, the northeastern semi-arid microbiomes were more diverse and displayed a higher level of complexity than the northern and southern ones. This finding may reflect the endurance of the northeast microbial communities tailored to deal with the stressful conditions of semi-aridity and may play a role in the resistance and growing landward expansion observed in such mangroves. Minimum temperature, precipitation, organic carbon, and potential evapotranspiration were the main microbiota variation drivers and should be considered in mangrove conservation and recovery strategies in the Anthropocene. In the face of changes in climate, land cover, biodiversity, and chemical composition, the richness and complexity harbored by semi-arid mangrove microbiomes may hold the key to mangrove adaptability in our changing planet.
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Affiliation(s)
| | - Walderly Melgaço Bezerra
- Laboratory of Microbial Ecology and Biotechnology, Department of Biology, Federal University of Ceará (UFC), Fortaleza, Brazil
| | | | - Alexandre Soares Rosado
- Biological and Environmental Science and Engineering Division, King Abdullah University of Science and Technology (KAUST), Thuwal, Saudi Arabia
| | - Vânia Maria Maciel Melo
- Laboratory of Microbial Ecology and Biotechnology, Department of Biology, Federal University of Ceará (UFC), Fortaleza, Brazil
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20
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Imchen M, Kumavath R. Shotgun metagenomics reveals a heterogeneous prokaryotic community and a wide array of antibiotic resistance genes in mangrove sediment. FEMS Microbiol Ecol 2021; 96:5897355. [PMID: 32845305 DOI: 10.1093/femsec/fiaa173] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/26/2019] [Accepted: 08/18/2020] [Indexed: 12/20/2022] Open
Abstract
Saline tolerant mangrove forests partake in vital biogeochemical cycles. However, they are endangered due to deforestation as a result of urbanization. In this study, we have carried out a metagenomic snapshot of the mangrove ecosystem from five countries to assess its taxonomic, functional and antibiotic resistome structure. Chao1 alpha diversity varied significantly (P < 0.001) between the countries (Brazil, Saudi Arabia, China, India and Malaysia). All datasets were composed of 33 phyla dominated by eight major phyla covering >90% relative abundance. Comparative analysis of mangrove with terrestrial and marine ecosystems revealed the strongest heterogeneity in the mangrove microbial community. We also observed that the mangrove community shared similarities to both the terrestrial and marine microbiome, forming a link between the two contrasting ecosystems. The antibiotic resistant genes (ARG) resistome was comprised of nineteen level 3 classifications dominated by multidrug resistance efflux pumps (46.7 ± 4.3%) and BlaR1 family regulatory sensor-transducer disambiguation (25.2 ± 4.8%). ARG relative abundance was significantly higher in Asian countries and in human intervention datasets at a global scale. Our study shows that the mangrove microbial community and its antibiotic resistance are affected by geography as well as human intervention and are unique to the mangrove ecosystem. Understanding changes in the mangrove microbiome and its ARG is significant for sustainable development and public health.
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Affiliation(s)
- Madangchanok Imchen
- Department of Genomic Science, School of Biological Sciences, Central University of Kerala, Tejaswini Hills, Periya (P.O) Kasaragod, Kerala-671320, India
| | - Ranjith Kumavath
- Department of Genomic Science, School of Biological Sciences, Central University of Kerala, Tejaswini Hills, Periya (P.O) Kasaragod, Kerala-671320, India
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21
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Chowdhury A, Naz A, Maiti SK. Bioaccumulation of potentially toxic elements in three mangrove species and human health risk due to their ethnobotanical uses. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2021; 28:10.1007/s11356-021-12566-w. [PMID: 33638081 DOI: 10.1007/s11356-021-12566-w] [Citation(s) in RCA: 18] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/13/2020] [Accepted: 01/15/2021] [Indexed: 06/12/2023]
Abstract
The aim of this study was to assess probabilistic human health risk due to ethnobotanical usage of Avicennia officinalis, Porteresia coarctata and Acanthus ilicifolius. The study was conducted at the tannery outfall near Sundarban (Ramsar wetland, India) mangrove ecosystem affected by potentially toxic elements (Cd, Cr, Cu, Hg, Mn, Ni, Pb, and Zn). Total metal concentrations (mg kg-1) were considerably higher in the polluted rhizosphere namely, Cd (1.05-1.97), Cu (36.3-38.6), Cr (144-184), Hg (0.04-0.19), Mn (163-184), Ni (37.7-46.4), Pb (20-36.6), and Zn (97-104). Ecological risk index indicated low to moderate ecological risk in this site, whereas the ecological risk factor showed high potential ecological risk due to Cd pollution. BCR Sequential extraction of metals showed more exchangeable fraction of Cd (47-55%), Cr (9-13%), Hg (11-13%), and Pb (11-15%), at the polluted site. Mercury, though present in trace amount in sediment, showed the highest bioaccumulation in all the three plants. Among the toxic trio, Hg showed the highest bioaccumulation in A. officinalis, Cd in P. coarctata but Pb has the lowest bioaccumulation potential in all the three species. Occasional fruit consumption of A. officinalis and dermal application of leaf, bark of A. officinalis (antimicrobial), A. ilicifolius (anti-inflammatory, pain reliever when applied on wounds) indicated negligible human health risk. However, long-term consumption of P. coarctata (wild rice variety) seeds posed health risk (THQ>1) both in adults and children age groups. This study concludes that nature of ethnobotanical use and metal contamination levels of the mangrove rhizosphere can impact human health. The transfer process of potentially toxic elements from rhizosphere to plants to human body should be considered while planing pollution mitigation measures. Graphical Abstract.
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Affiliation(s)
- Abhiroop Chowdhury
- School of Environment & Sustainability, O.P. Jindal Global University, Sonipat, Haryana, 131001, India.
- Department of Environmental Science and Engineering, Indian Institute of Technology (Indian School of Mines), Dhanbad, Jharkhand, 826004, India.
| | - Aliya Naz
- Department of Environmental Science and Engineering, Indian Institute of Technology (Indian School of Mines), Dhanbad, Jharkhand, 826004, India
| | - Subodh Kumar Maiti
- Department of Environmental Science and Engineering, Indian Institute of Technology (Indian School of Mines), Dhanbad, Jharkhand, 826004, India
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22
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Lee H, Heo YM, Kwon SL, Yoo Y, Kim D, Lee J, Kwon BO, Khim JS, Kim JJ. Environmental drivers affecting the bacterial community of intertidal sediments in the Yellow Sea. THE SCIENCE OF THE TOTAL ENVIRONMENT 2021; 755:142726. [PMID: 33082038 DOI: 10.1016/j.scitotenv.2020.142726] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/23/2020] [Revised: 09/11/2020] [Accepted: 09/24/2020] [Indexed: 06/11/2023]
Abstract
Intertidal flats, as transition zones where terrestrial and marine ecosystems meet, provide unique environments and play an important role in marine ecosystems. In particular, the environmental characteristics of tidal marshes show are different than those of bare flats, especially in the rhizosphere. However, unlike the rhizosphere in terrestrial ecosystems, the rhizosphere of plants in tidal marsh areas and the associated microbial community have been the focus of very little research. Thus, this study investigated the diversity and variation in bacterial communities in the rhizosphere of a Phragmites australis and Suaeda japonica and along the sediment depths. High-throughput sequencing was performed by amplifying the 16S rRNA gene of environmental DNA extracted from sediment cores, and indicator species were identified with respect to the vegetation type and sediment depth. The most abundant phylum was Proteobacteria, followed by Chloroflexi, Bacteroidetes, Acidobacteria, and Firmicutes. In general, the results indicated that not only vegetation type and sediment depth themselves but also their interaction resulted in significant differences among the bacterial communities. The envfit results revealed that the environmental variables of sediment, such as mud content, organic matter, total organic carbon, and total nitrogen, had significant effects on the bacterial community structure. The indicator species varied depending on the vegetation type and sediment depth, showing significant correlations with certain selected environmental variables, but were fundamentally related to the rhizosphere. Overall, this study revealed the key factors that determine the bacterial community structure in tidal marshes and the indicator species according to vegetation type in the little studied rhizosphere of the intertidal ecosystem.
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Affiliation(s)
- Hanbyul Lee
- Division of Environmental Science & Ecological Engineering, College of Life Science & Biotechnology, Korea University, Seoul 02841, Republic of Korea
| | - Young Mok Heo
- Division of Environmental Science & Ecological Engineering, College of Life Science & Biotechnology, Korea University, Seoul 02841, Republic of Korea
| | - Sun Lul Kwon
- Division of Environmental Science & Ecological Engineering, College of Life Science & Biotechnology, Korea University, Seoul 02841, Republic of Korea
| | - Yeonjae Yoo
- Division of Environmental Science & Ecological Engineering, College of Life Science & Biotechnology, Korea University, Seoul 02841, Republic of Korea
| | - Dongjun Kim
- Division of Environmental Science & Ecological Engineering, College of Life Science & Biotechnology, Korea University, Seoul 02841, Republic of Korea
| | - Jongmin Lee
- School of Earth and Environmental Sciences & Research Institute of Oceanography, Seoul National University, Seoul 08826, Republic of Korea
| | - Bong-Oh Kwon
- Department of Marine Biotechnology, Kunsan National University, Kunsan 54150, Republic of Korea
| | - Jong Seong Khim
- School of Earth and Environmental Sciences & Research Institute of Oceanography, Seoul National University, Seoul 08826, Republic of Korea.
| | - Jae-Jin Kim
- Division of Environmental Science & Ecological Engineering, College of Life Science & Biotechnology, Korea University, Seoul 02841, Republic of Korea.
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23
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Stable Isotopes Clearly Track Mangrove Inputs and Food Web Changes Along a Reforestation Gradient. Ecosystems 2020. [DOI: 10.1007/s10021-020-00561-0] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
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24
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Sun C, Zeng X, Lai Q, Wang Z, Shao Z. Mangrovibacterium lignilyticum sp. nov., a facultatively anaerobic lignin-degrading bacterium isolated from mangrove sediment. Int J Syst Evol Microbiol 2020; 70:4502-4507. [PMID: 32598276 DOI: 10.1099/ijsem.0.004305] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022] Open
Abstract
An alkali lignin-degrading, Gram-stain-negative, rod-shaped, non-motile and facultatively anaerobic bacterium, designated BM_7T, was isolated from mangrove sediment of the supralittoral zone in the Jiulong river estuary, PR China. The cells of strain BM_7T were 0.4-0.6 µm wide and 1.0-8.5 µm long. Oxidase and catalase activities were positive. Strain BM_7T could grow at 10-37 °C (optimum, 25-28 °C), at pH 6.0-8.0 (optimum, pH 7.0) and in the presence of 0.5-6 % (w/v) NaCl (optimum, 2%). Phylogenetic analysis of 16S rRNA gene sequences indicated that strain BM_7T belonged to the genus Mangrovibacterium of the family Prolixibacteraceae. It showed the highest similarity to Mangrovibacterium diazotrophicum JCM 19152T (96.8 %), followed by Mangrovibacterium marinum KCTC 42253T (96.1%). The values of average nucleotide identity and DNA-DNA hybridization were calculated as 76.9, 24.3 and 76.1, 17.4 % between strain BM_7T with M. diazotrophicum JCM 19152T and M. marinum KCTC 42253T, respectively. The major respiratory quinone of strain BM_7T was MK-7. The polar lipids were detected as phosphatidylethanolamine, three unidentified phospholipids and four unidentified aminolipids. The dominant fatty acids consisted of iso-C15 : 0, anteiso-C15 : 0, C15 : 1 ω6c, iso-C17 : 0 3-OH, C17 : 1 ω6c, C17 : 0 3-OH and C17 : 0. The genome size of strain BM_7T is 5.6 Mb, with G+C content of 43.4 mol%. Based on the phylogenetic and phenotypic characteristics, strain BM_7T was considered to represent a novel species of the genus Mangrovibacterium, and the name Mangrovibacterium lignilyticum sp. nov. is proposed. The type strain is BM_7T (=MCCC 1A15882T=KCTC 72696T).
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Affiliation(s)
- Chao Sun
- State Key Laboratory Breeding Base of Marine Genetic Resources, Xiamen, 361005, PR China.,The Key Laboratory for Synthetic Biotechnology of Xiamen City, Xiamen University, Xiamen, 361005, PR China.,Key Laboratory of Marine Genetic Resources, Third Institute of Oceanography, Ministry of Natural Resources, Xiamen, 361005, PR China.,Institute of Biochemical Engineering, Department of Chemical and Biochemical Engineering, College of Chemistry and Chemical Engineering, Xiamen University, Xiamen, 361005, PR China.,Fujian Key Laboratory of Marine Genetic Resources, Xiamen, 361005, PR China
| | - Xiang Zeng
- Fujian Key Laboratory of Marine Genetic Resources, Xiamen, 361005, PR China.,State Key Laboratory Breeding Base of Marine Genetic Resources, Xiamen, 361005, PR China.,Key Laboratory of Marine Genetic Resources, Third Institute of Oceanography, Ministry of Natural Resources, Xiamen, 361005, PR China
| | - Qiliang Lai
- Fujian Key Laboratory of Marine Genetic Resources, Xiamen, 361005, PR China.,State Key Laboratory Breeding Base of Marine Genetic Resources, Xiamen, 361005, PR China.,Key Laboratory of Marine Genetic Resources, Third Institute of Oceanography, Ministry of Natural Resources, Xiamen, 361005, PR China
| | - Zhaoshou Wang
- Institute of Biochemical Engineering, Department of Chemical and Biochemical Engineering, College of Chemistry and Chemical Engineering, Xiamen University, Xiamen, 361005, PR China.,The Key Laboratory for Synthetic Biotechnology of Xiamen City, Xiamen University, Xiamen, 361005, PR China
| | - Zongze Shao
- Key Laboratory of Marine Genetic Resources, Third Institute of Oceanography, Ministry of Natural Resources, Xiamen, 361005, PR China.,Fujian Key Laboratory of Marine Genetic Resources, Xiamen, 361005, PR China.,State Key Laboratory Breeding Base of Marine Genetic Resources, Xiamen, 361005, PR China
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25
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Xylanases from marine microorganisms: A brief overview on scope, sources, features and potential applications. BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS 2020; 1868:140312. [DOI: 10.1016/j.bbapap.2019.140312] [Citation(s) in RCA: 25] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/06/2019] [Revised: 10/31/2019] [Accepted: 11/05/2019] [Indexed: 01/10/2023]
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26
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Alves KJ, da Silva MCP, Cotta SR, Ottoni JR, van Elsas JD, de Oliveira VM, Andreote FD. Mangrove soil as a source for novel xylanase and amylase as determined by cultivation-dependent and cultivation-independent methods. Braz J Microbiol 2019; 51:217-228. [PMID: 31741310 DOI: 10.1007/s42770-019-00162-7] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/04/2019] [Accepted: 09/19/2019] [Indexed: 11/25/2022] Open
Abstract
Xylanase and α-amylase enzymes participate in the degradation of organic matter, acting in hemicellulose and starch mineralization, respectively, and are in high demand for industrial use. Mangroves represent a promising source for bioprospecting enzymes due to their unique characteristics, such as fluctuations in oxic/anoxic conditions and salinity. In this context, the present work aimed to bioprospect xylanases from mangrove soil using cultivation-dependent and cultivation-independent methods. Through screening from a metagenomic library, three potentially xylanolytic clones were obtained and sequenced, and reads were assembled into contigs and annotated. The contig MgrBr135 was affiliated with the Planctomycetaceae family and was one of 30 ORFs selected for subcloning that demonstrated only amylase activity. Through the cultivation method, 38 bacterial isolates with xylanolytic activity were isolated. Isolate 11 showed an enzymatic index of 10.9 using the plate assay method. Isolate 39 achieved an enzyme activity of 0.43 U/mL using the colorimetric method with 3,5-dinitrosalicylic acid. Isolate 39 produced xylanase on culture medium with salinity ranging from 1.25 to 5%. Partial 16S rRNA gene sequencing identified isolates in the Bacillus and Paenibacillus genera. The results of this study highlight the importance of mangroves as an enzyme source and show that bacterial groups can be used for starch and hemicellulose degradation.
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Affiliation(s)
- Kelly Jaqueline Alves
- Department of Soil Science, Laboratory of Soil Microbiology, University of Sao Paulo, Padua Dias Avenue, 11 CP 09, Piracicaba, São Paulo, 13418-900, Brazil.
| | - Mylenne Calciolari Pinheiro da Silva
- Department of Soil Science, Laboratory of Soil Microbiology, University of Sao Paulo, Padua Dias Avenue, 11 CP 09, Piracicaba, São Paulo, 13418-900, Brazil
| | - Simone Raposo Cotta
- Center for Nuclear Energy in Agriculture, University of São Paulo, Centenario Avenue, 303, Piracicaba, São Paulo, 13416-000, Brazil
| | - Júlia Ronzella Ottoni
- University Center Dinâmica das Cataratas, Castelo Branco Street, 349, Foz do Iguaçu, Paraná, 85852-010, Brazil
| | - Jan Dirk van Elsas
- Microbial Ecology, Groningen Institute for Evolutionary Life Sciences, University of Groningen, Nijenborgh 7, 9747, AG, Groningen, the Netherlands
| | - Valeria Maia de Oliveira
- Center for Chemistry, Biology and Agriculture (CPQBA), University of Campinas (UNICAMP), Alexandre Cazellato Avenue, 999, Paulínia, São Paulo, 13140-000, Brazil
| | - Fernando Dini Andreote
- Department of Soil Science, Laboratory of Soil Microbiology, University of Sao Paulo, Padua Dias Avenue, 11 CP 09, Piracicaba, São Paulo, 13418-900, Brazil
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Zhao H, Yan B, Mo X, Li P, Li B, Li Q, Li N, Mo S, Ou Q, Shen P, Wu B, Jiang C. Prevalence and proliferation of antibiotic resistance genes in the subtropical mangrove wetland ecosystem of South China Sea. Microbiologyopen 2019; 8:e871. [PMID: 31251470 PMCID: PMC6855136 DOI: 10.1002/mbo3.871] [Citation(s) in RCA: 29] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/25/2019] [Revised: 04/28/2019] [Accepted: 04/30/2019] [Indexed: 12/14/2022] Open
Abstract
The emerging pollutants antibiotic resistance genes (ARGs) are prevalent in aquatic environments such as estuary. Coastal mangrove ecosystems always serve as natural wetlands for receiving sewage which always carry ARGs. Currently, the research considering ARG distribution in mangrove ecosystems gains more interest. In this work, we investigated the diversity of ARGs in an urban estuary containing mangrove and nonmangrove areas of the South China Sea. A total of 163 ARGs that classified into 22 resistance types and six resistance mechanisms were found. ARG abundance of the samples in the estuary is between 0.144 and 0.203. This is within the general range of Chinese estuaries. The difference analysis showed that abundances of total ARGs, six most abundant ARGs (mtrA, rpoB, rpoC, rpsL, ef-Tu, and parY), the most abundant resistance types (elfamycin, multidrug, and peptide), and the most abundant resistance mechanism (target alteration) were significantly lower in mangrove sediment than that in nonmangrove sediment (p < 0.05). Network and partial redundancy analysis showed that sediment properties and mobile genetic elements were the most influential factors impacting ARG distribution rather than microbial community. The two factors collectively explain 51.22% of the differences of ARG distribution. Our study indicated that mangrove sediments have the capacity to remove ARGs. This work provides a research paradigm for analysis of ARG prevalence and proliferation in the subtropical marine coastal mangrove ecosystem.
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Affiliation(s)
- Huaxian Zhao
- Guangxi Key Lab of Mangrove Conservation and UtilizationGuangxi Mangrove Research CenterGuangxi Academy of SciencesBeihaiChina
- Guangxi Key Laboratory of Marine Natural Products and Combinatorial Biosynthesis ChemistryGuangxi Academy of SciencesNanningChina
- State Key Laboratory for Conservation and Utilization of Subtropical Agro‐Bioresources, College of Life Science and TechnologyGuangxi UniversityNanningChina
| | - Bing Yan
- Guangxi Key Lab of Mangrove Conservation and UtilizationGuangxi Mangrove Research CenterGuangxi Academy of SciencesBeihaiChina
- Guangxi Key Laboratory of Marine Natural Products and Combinatorial Biosynthesis ChemistryGuangxi Academy of SciencesNanningChina
| | - Xueyan Mo
- State Key Laboratory for Conservation and Utilization of Subtropical Agro‐Bioresources, College of Life Science and TechnologyGuangxi UniversityNanningChina
| | - Pu Li
- PFOMIC Bioinformatics CompanyNanningChina
| | - Baoqin Li
- Guangdong Key Laboratory of Integrated Agro‐Environmental Pollution Control and ManagementGuangdong Institute of Eco‐Environmental Science & TechnologyGuangzhouChina
| | - Quanwen Li
- State Key Laboratory for Conservation and Utilization of Subtropical Agro‐Bioresources, College of Life Science and TechnologyGuangxi UniversityNanningChina
| | - Nan Li
- Key Laboratory of Environment Change and Resources Use in Beibu Gulf, Ministry of Education (Nanning Normal University)NanningChina
| | - Shuming Mo
- State Key Laboratory for Conservation and Utilization of Subtropical Agro‐Bioresources, College of Life Science and TechnologyGuangxi UniversityNanningChina
| | - Qian Ou
- State Key Laboratory for Conservation and Utilization of Subtropical Agro‐Bioresources, College of Life Science and TechnologyGuangxi UniversityNanningChina
| | - Peihong Shen
- State Key Laboratory for Conservation and Utilization of Subtropical Agro‐Bioresources, College of Life Science and TechnologyGuangxi UniversityNanningChina
| | - Bo Wu
- Department of chemical and biological engineeringGuangxi Normal University for NationalitiesChongzuoChina
| | - Chengjian Jiang
- Guangxi Key Lab of Mangrove Conservation and UtilizationGuangxi Mangrove Research CenterGuangxi Academy of SciencesBeihaiChina
- Guangxi Key Laboratory of Marine Natural Products and Combinatorial Biosynthesis ChemistryGuangxi Academy of SciencesNanningChina
- State Key Laboratory for Conservation and Utilization of Subtropical Agro‐Bioresources, College of Life Science and TechnologyGuangxi UniversityNanningChina
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Heo YM, Lee H, Kim K, Kwon SL, Park MY, Kang JE, Kim GH, Kim BS, Kim JJ. Fungal Diversity in Intertidal Mudflats and Abandoned Solar Salterns as a Source for Biological Resources. Mar Drugs 2019; 17:E601. [PMID: 31652878 PMCID: PMC6891761 DOI: 10.3390/md17110601] [Citation(s) in RCA: 15] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/26/2019] [Revised: 10/18/2019] [Accepted: 10/22/2019] [Indexed: 02/06/2023] Open
Abstract
Intertidal zones are unique environments that are known to be ecological hot spots. In this study, sediments were collected from mudflats and decommissioned salterns on three islands in the Yellow Sea of South Korea. The diversity analysis targeted both isolates and unculturable fungi via Illumina sequencing, and the natural recovery of the abandoned salterns was assessed. The phylogeny and bioactivities of the fungal isolates were investigated. The community analysis showed that the abandoned saltern in Yongyudo has not recovered to a mudflat, while the other salterns have almost recovered. The results suggested that a period of more than 35 years may be required to return abandoned salterns to mudflats via natural restoration. Gigasporales sp. and Umbelopsis sp. were selected as the indicators of mudflats. Among the 53 isolates, 18 appeared to be candidate novel species, and 28 exhibited bioactivity. Phoma sp., Cladosporium sphaerospermum, Penicillium sp. and Pseudeurotium bakeri, and Aspergillus urmiensis showed antioxidant, tyrosinase inhibition, antifungal, and quorum-sensing inhibition activities, respectively, which has not been reported previously. This study provides reliable fungal diversity information for mudflats and abandoned salterns and shows that they are highly valuable for bioprospecting not only for novel microorganisms but also for novel bioactive compounds.
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Affiliation(s)
- Young Mok Heo
- Division of Environmental Science & Ecological Engineering, College of Life Sciences & Biotechnology, Korea University, Seoul 02841, Korea.
| | - Hanbyul Lee
- Division of Environmental Science & Ecological Engineering, College of Life Sciences & Biotechnology, Korea University, Seoul 02841, Korea.
| | - Kyeongwon Kim
- Division of Environmental Science & Ecological Engineering, College of Life Sciences & Biotechnology, Korea University, Seoul 02841, Korea.
| | - Sun Lul Kwon
- Division of Environmental Science & Ecological Engineering, College of Life Sciences & Biotechnology, Korea University, Seoul 02841, Korea.
| | - Min Young Park
- Department of Biosystems & Biotechnology, College of Life Sciences and Biotechnology, Korea University, Seoul 02841, Korea.
| | - Ji Eun Kang
- Department of Biosystems & Biotechnology, College of Life Sciences and Biotechnology, Korea University, Seoul 02841, Korea.
| | - Gyu-Hyeok Kim
- Division of Environmental Science & Ecological Engineering, College of Life Sciences & Biotechnology, Korea University, Seoul 02841, Korea.
| | - Beom Seok Kim
- Division of Biotechnology, College of Life Sciences & Biotechnology, Korea University, Seoul 02841, Korea.
| | - Jae-Jin Kim
- Division of Environmental Science & Ecological Engineering, College of Life Sciences & Biotechnology, Korea University, Seoul 02841, Korea.
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Zhang CJ, Pan J, Duan CH, Wang YM, Liu Y, Sun J, Zhou HC, Song X, Li M. Prokaryotic Diversity in Mangrove Sediments across Southeastern China Fundamentally Differs from That in Other Biomes. mSystems 2019; 4:e00442-19. [PMID: 31506265 PMCID: PMC6739103 DOI: 10.1128/msystems.00442-19] [Citation(s) in RCA: 46] [Impact Index Per Article: 7.7] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/22/2019] [Accepted: 08/14/2019] [Indexed: 11/21/2022] Open
Abstract
Mangroves, as a blue carbon reservoir, provide an environment for a variety of microorganisms. Mangroves lie in special locations connecting coastal and estuarine areas and experience fluctuating conditions, which are expected to intensify with climate change, creating a need to better understand the relative roles of stochastic and deterministic processes in shaping microbial community assembly. Here, a study of microbial communities inhabiting mangrove sediments across southeastern China, spanning mangroves in six nature reserves, was conducted. We performed high-throughput DNA sequencing of these samples and compared them with data of 1,370 sediment samples collected from the Earth Microbiome Project (EMP) to compare the microbial diversity of mangroves with that of other biomes. Our results showed that prokaryotic alpha diversity in mangroves was significantly higher than that in other biomes and that microbial beta diversity generally clustered according to biome types. The core operational taxonomic units (OTUs) in mangroves were mostly assigned to Gammaproteobacteria, Deltaproteobacteria, Chloroflexi, and Euryarchaeota The majority of beta nearest-taxon index values were higher than 2, indicating that community assembly in mangroves was better explained through a deterministic process than through a stochastic process. Mean annual precipitation (MAP) and total organic carbon (TOC) were main deterministic factors explaining variation in the microbial community. This study fills a gap in addressing the unique microbial diversity of mangrove ecosystems and their microbial community assembly mechanisms.IMPORTANCE Understanding the underlying mechanisms of microbial community assembly patterns is a vital issue in microbial ecology. Mangroves, as an important and special ecosystem, provide a unique environment for examining the relative importance of stochastic and deterministic processes. We made the first global-scale comparison and found that microbial diversity was significantly different in mangrove sediments compared to that of other biomes. Furthermore, our results suggest that a deterministic process is more important in shaping microbial community assembly in mangroves.
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Affiliation(s)
- Cui-Jing Zhang
- Institute for Advanced Study, Shenzhen University, Shenzhen, China
- Key Laboratory of Optoelectronic Devices and Systems of Ministry of Education and Guangdong Province, College of Optoelectronic Engineering, Shenzhen University, Shenzhen, China
| | - Jie Pan
- Institute for Advanced Study, Shenzhen University, Shenzhen, China
| | - Chang-Hai Duan
- Institute for Advanced Study, Shenzhen University, Shenzhen, China
- College of Life Sciences and Oceanography, Shenzhen University, Shenzhen, China
| | - Yong-Ming Wang
- Institute for Advanced Study, Shenzhen University, Shenzhen, China
- Key Laboratory of Optoelectronic Devices and Systems of Ministry of Education and Guangdong Province, College of Optoelectronic Engineering, Shenzhen University, Shenzhen, China
| | - Yang Liu
- Institute for Advanced Study, Shenzhen University, Shenzhen, China
| | - Jian Sun
- Key Laboratory of Optoelectronic Devices and Systems of Ministry of Education and Guangdong Province, College of Optoelectronic Engineering, Shenzhen University, Shenzhen, China
- College of Life Sciences and Oceanography, Shenzhen University, Shenzhen, China
| | - Hai-Chao Zhou
- College of Life Sciences and Oceanography, Shenzhen University, Shenzhen, China
| | - Xin Song
- College of Life Sciences and Oceanography, Shenzhen University, Shenzhen, China
| | - Meng Li
- Institute for Advanced Study, Shenzhen University, Shenzhen, China
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30
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Tang XX, Yan X, Fu WH, Yi LQ, Tang BW, Yu LB, Fang MJ, Wu Z, Qiu YK. New β-Lactone with Tea Pathogenic Fungus Inhibitory Effect from Marine-Derived Fungus MCCC3A00957. JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY 2019; 67:2877-2885. [PMID: 30785752 DOI: 10.1021/acs.jafc.9b00228] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/09/2023]
Abstract
Fusarium solani H915 (MCCC3A00957), a fungus originating from mangrove sediment, showed potent inhibitory activity against tea pathogenic fungus Pestalotiopsis theae. Successive chromatographic separation on an ethyl acetate (EtOAc) extract of F. solani H915 resulted in the isolation of five new alkenoic diacid derivatives: fusarilactones A-C (1-3), and fusaridioic acids B (4) and C (5), in addition to seven known compounds (6-12). The chemical structures of these metabolites were elucidated on the basis of UV, IR, HR-ESI-MS, and NMR spectroscopic data. The antifungal activity of the isolated compounds was evaluated. Compounds with a β-lactone ring (1, 2, and 7) exhibited potent inhibitory activities, while none of the other compounds show activity. The ED50 values of the compounds 1, 2, and 7 were 38.14 ± 1.67, 42.26 ± 1.96, and 18.35 ± 1.27 μg/mL, respectively. In addition, inhibitory activity of these compounds against 3-hydroxy-3-methylglutaryl-CoA (HMG-CoA) synthase gene expression was also detected using real-time RT-PCR. Results indicated that compounds 1, 2, and 7 may inhibit the growth of P. theae by interfering with the biosynthesis of ergosterol by down-regulating the expression of HMG-CoA synthase.
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Affiliation(s)
- Xi-Xiang Tang
- Key Laboratory of Marine Biogenetic Resources , Third Institute of Oceanography State, Ministry of Natural Resources , Da-Xue Road , Xiamen 361005 , China
| | - Xia Yan
- Li Dak Sum Yip Yio Chin Kenneth Li Marine Biopharmaceutical Research Center , Ningbo University , Ningbo 315832 , China
| | - Wen-Hao Fu
- Fujian Provincial Key Laboratory of Innovative Drug Target Research, School of Pharmaceutical Sciences , Xiamen University , South Xiang-An Road , Xiamen , 361102 , China
| | - Lu-Qi Yi
- Fujian Provincial Key Laboratory of Innovative Drug Target Research, School of Pharmaceutical Sciences , Xiamen University , South Xiang-An Road , Xiamen , 361102 , China
| | - Bo-Wen Tang
- Fujian Provincial Key Laboratory of Innovative Drug Target Research, School of Pharmaceutical Sciences , Xiamen University , South Xiang-An Road , Xiamen , 361102 , China
| | - Li-Bo Yu
- Key Laboratory of Marine Biogenetic Resources , Third Institute of Oceanography State, Ministry of Natural Resources , Da-Xue Road , Xiamen 361005 , China
| | - Mei-Juan Fang
- Fujian Provincial Key Laboratory of Innovative Drug Target Research, School of Pharmaceutical Sciences , Xiamen University , South Xiang-An Road , Xiamen , 361102 , China
| | - Zhen Wu
- Fujian Provincial Key Laboratory of Innovative Drug Target Research, School of Pharmaceutical Sciences , Xiamen University , South Xiang-An Road , Xiamen , 361102 , China
| | - Ying-Kun Qiu
- Fujian Provincial Key Laboratory of Innovative Drug Target Research, School of Pharmaceutical Sciences , Xiamen University , South Xiang-An Road , Xiamen , 361102 , China
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Behera P, Mohapatra M, Kim JY, Adhya TK, Pattnaik AK, Rastogi G. Spatial and temporal heterogeneity in the structure and function of sediment bacterial communities of a tropical mangrove forest. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2019; 26:3893-3908. [PMID: 30547343 DOI: 10.1007/s11356-018-3927-5] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/09/2018] [Accepted: 12/04/2018] [Indexed: 06/09/2023]
Abstract
Bacterial communities of mangrove sediments are well appreciated for their role in nutrient cycling. However, spatiotemporal variability in these communities over large geographical scale remains understudied. We investigated sediment bacterial communities and their metabolic potential in an intertidal mangrove forest of India, Bhitarkanika, using high-throughput sequencing of 16S rRNA genes and community-level physiological profiling. Bulk surface sediments from five different locations representing riverine and bay sites were collected over three seasons. Seasonality largely explained the variation in the structural and metabolic patterns of the sediment bacterial communities. Freshwater Actinobacteria were more abundant in monsoon, whereas γ-Proteobacteria demonstrated higher abundance in summer. Distinct differences in the bacterial community composition were noted between riverine and bay sites. For example, salt-loving marine bacteria affiliated to Oceanospirillales were more prominent in the bay sites than the riverine sites. L-asparagine, N-acetyl-D-glucosamine, and D-mannitol were the preferentially utilized carbon sources by bacterial communities. Bacterial community composition was largely governed by salinity and organic carbon content of the sediments. Modeling analysis revealed that the abundance of δ-Proteobacteria increased with salinity, whereas β-Proteobacteria displayed an opposite trend. Metabolic mapping of taxonomic data predicted biogeochemical functions such as xylan and chitin degradation, ammonia oxidation, nitrite reduction, and sulfate reduction in the bacterial communities suggesting their role in carbon, nitrogen, and sulfur cycling in mangrove sediments. This study has provided valuable clues about spatiotemporal heterogeneity in the structural and metabolic patterns of bacterial communities and their environmental determinants in a tropical mangrove forest.
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Affiliation(s)
- Pratiksha Behera
- Wetland Research and Training Centre, Chilika Development Authority, Balugaon, Odisha, 752030, India
| | - Madhusmita Mohapatra
- Wetland Research and Training Centre, Chilika Development Authority, Balugaon, Odisha, 752030, India
| | - Ji Yoon Kim
- Department of Integrated Biological Science, Pusan National University, Geumjeong-gu, Busan, 46241, South Korea
| | - Tapan K Adhya
- School of Biotechnology, KIIT University, Bhubaneswar, Odisha, 751024, India
| | - Ajit K Pattnaik
- Wetland Research and Training Centre, Chilika Development Authority, Balugaon, Odisha, 752030, India
| | - Gurdeep Rastogi
- Wetland Research and Training Centre, Chilika Development Authority, Balugaon, Odisha, 752030, India.
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Chai M, Li R, Shi C, Shen X, Li R, Zan Q. Contamination of polybrominated diphenyl ethers (PBDEs) in urban mangroves of Southern China. THE SCIENCE OF THE TOTAL ENVIRONMENT 2019; 646:390-399. [PMID: 30055499 DOI: 10.1016/j.scitotenv.2018.07.278] [Citation(s) in RCA: 27] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/31/2018] [Revised: 07/19/2018] [Accepted: 07/19/2018] [Indexed: 06/08/2023]
Abstract
Mangroves are threatened due to urban development and human activities in coastal regions. Four urban mangroves in Shenzhen (rapidly developing city of China) were selected according to urban functional zoning, namely, Shajing mangrove (SJM) and Xixiang mangrove (XXM) featured with industry district, Futian mangrove (FTM) and Baguang mangrove (BGM) featured with central business district and ecological preserve. Eight BDE congeners (BDE-28, -47, -99, -100, -153, -154, -183, and -209) in mangrove sediments and leaves were determined. The highest level of BDE-209 in SJM was proximate to areas of point-source discharges of Dongbao River in Pearl River Estuary, China. Total organic carbon (TOC) was influential in BDE-209 accumulations in SJM, XXM, and FTM. Multiple variate analysis implied that PBDEs in SJM, XXM and FTM mainly composed of penta-, octa-, and deca-BDEs, with surface runoff to be the main contamination sources; while BGM was contaminated by penta- and octa-BDEs. Ecological risk of BDE-209 was high in SJM, with medium/negligible risk in the other urban mangroves. The transfers of BDE-209 from sediment to leaf were weak (BGM and FTM), improved (XXM), and restricted (SJM), respectively. This is the first reports of spatial distribution and bioaccumulation of PBDEs in urban mangroves featured with different urban functional zonings. More attention is required to reduce emission of PBDEs into the environment and manage PBDEs contamination in urban mangroves.
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Affiliation(s)
- Minwei Chai
- School of Environment and Energy, Peking University Shenzhen Graduate School, Shenzhen 518055, China
| | - Ruili Li
- School of Environment and Energy, Peking University Shenzhen Graduate School, Shenzhen 518055, China.
| | - Cong Shi
- School of Environment and Energy, Peking University Shenzhen Graduate School, Shenzhen 518055, China
| | - Xiaoxue Shen
- School of Environment and Energy, Peking University Shenzhen Graduate School, Shenzhen 518055, China
| | - Rongyu Li
- School of Environment and Energy, Peking University Shenzhen Graduate School, Shenzhen 518055, China
| | - Qijie Zan
- Guangdong Neilingding Futian National Nature Reserve, Shenzhen 518000, China
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33
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Distribution and diversity of foliar endophytic fungi in the mangroves of Andaman Islands, India. FUNGAL ECOL 2018. [DOI: 10.1016/j.funeco.2018.09.007] [Citation(s) in RCA: 22] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/29/2022]
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Moitinho MA, Bononi L, Souza DT, Melo IS, Taketani RG. Bacterial Succession Decreases Network Complexity During Plant Material Decomposition in Mangroves. MICROBIAL ECOLOGY 2018; 76:954-963. [PMID: 29687224 DOI: 10.1007/s00248-018-1190-4] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/25/2017] [Accepted: 04/10/2018] [Indexed: 06/08/2023]
Abstract
In this study, 16S rRNA gene amplicon sequencing was used to assess bacterial diversity and dynamics throughout different stages of leaves decomposition of three plant species (Rhizophora mangle, Laguncularia racemosa, and Avicennia schaueriana) in three distinct mangroves of São Paulo state, Brazil. The experiments were conducted in microcosms. Phylogenetic diversity (Faiths' PD) index showed differences between samples and suggested that some treatments like R. mangle increased their bacterial diversity through time. Principal coordinate analysis revealed that community's profile varied based on mangroves, followed by plant species and time. A clear succession patterns was observed in this study, i.e., some microorganisms with low abundance in the initial phases gradually became dominant (e.g., Alphaproteobacteria), whereas microbes that were initially predominant became low (e.g., Gammaproteobacteria). Co-occurrence analyses were performed for all times of plant degradation aiming to better understand the relationships between bacterial populations. The c-score index was done to test the randomness of the community assemblage during the stages of decomposition. For all degradation time points, the values of the observed c-score were higher than the values of the simulated c-score. This result indicated that during plant decomposition, the bacterial communities presented less co-occurrence than expected by chance and that these communities were not randomly assembled but instead they are driven by species interactions. Network analyses results showed that in the conditions presented in this experiment, the initial stages of leaf decomposition formed more connected and complex networks than the later stages. These results suggest that resource competition was a determinant in these specific mangroves during plant degradation, mainly in the initial periods.
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Affiliation(s)
- Marta A Moitinho
- Laboratory of Environmental Microbiology, Brazilian Agricultural Research Corporation, EMBRAPA Environment, SP 340 Highway-Km 127.5, Jaguariuna, SP, 13820-000, Brazil
- College of Agriculture "Luiz de Queiroz", University of São Paulo, Pádua Dias Avenue, 11, Piracicaba, SP, 13418-900, Brazil
| | - Laura Bononi
- Laboratory of Environmental Microbiology, Brazilian Agricultural Research Corporation, EMBRAPA Environment, SP 340 Highway-Km 127.5, Jaguariuna, SP, 13820-000, Brazil
- College of Agriculture "Luiz de Queiroz", University of São Paulo, Pádua Dias Avenue, 11, Piracicaba, SP, 13418-900, Brazil
| | - Danilo T Souza
- Laboratory of Environmental Microbiology, Brazilian Agricultural Research Corporation, EMBRAPA Environment, SP 340 Highway-Km 127.5, Jaguariuna, SP, 13820-000, Brazil
| | - Itamar S Melo
- Laboratory of Environmental Microbiology, Brazilian Agricultural Research Corporation, EMBRAPA Environment, SP 340 Highway-Km 127.5, Jaguariuna, SP, 13820-000, Brazil
| | - Rodrigo G Taketani
- Laboratory of Environmental Microbiology, Brazilian Agricultural Research Corporation, EMBRAPA Environment, SP 340 Highway-Km 127.5, Jaguariuna, SP, 13820-000, Brazil.
- College of Agriculture "Luiz de Queiroz", University of São Paulo, Pádua Dias Avenue, 11, Piracicaba, SP, 13418-900, Brazil.
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Kunthiphun S, Chokreansukchai P, Hondee P, Tanasupawat S, Savarajara A. Diversity and characterization of cultivable oleaginous yeasts isolated from mangrove forests. World J Microbiol Biotechnol 2018; 34:125. [PMID: 30083778 DOI: 10.1007/s11274-018-2507-7] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/11/2018] [Accepted: 07/20/2018] [Indexed: 12/20/2022]
Abstract
A total of 198 yeasts were isolated from 140 samples collected from 7 mangrove forests in 4 provinces of Thailand, and were found to belong to 30 genera, 45 described species and at least 12 undescribed species based on their 26S rRNA (D1/D2 domain) gene sequence. The most prevalent species was Candida tropicalis, followed by Candida pseudolambica and Rhodosporidium paludigena. Lipid accumulation, as determined by Nile red staining, of the isolated yeasts revealed that 69 and 18 strains were positive and strongly positive, respectively, while quantitative analysis of the intracellular lipid accumulated in the latter indicated that 10 of these strains, Pseudozyma tsukubaensis (YWT7-2 and YWT7-3), Rhodotorula sphaerocarpa (YWW6-1 and SFL14-1SF), Saitozyma podzolica (YWT1-1, NS3-3 and NS10-2), Prototheca zopfii var. hydrocarbonea OMS6-1 and Prototheca sp. (YMTW3-1 and YMTS5-2), were oleaginous. In this study we found that under nitrogen depletion condition (155 C/N ratio) Pseudozyma tsukubaensis YWT7-2 accumulated the highest level of intracellular lipid at 32.4% (w/w, dry cell weight), with a broadly similar fatty acid composition to that in palm oil.
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Affiliation(s)
- Sineenath Kunthiphun
- Department of Microbiology, Faculty of Science, Chulalongkorn University, 254 Phayathai Road, Pathumwan, Bangkok, 10330, Thailand
| | - Puthita Chokreansukchai
- Department of Microbiology, Faculty of Science, Chulalongkorn University, 254 Phayathai Road, Pathumwan, Bangkok, 10330, Thailand
| | - Patcharaporn Hondee
- Department of Microbiology, Faculty of Science, Chulalongkorn University, 254 Phayathai Road, Pathumwan, Bangkok, 10330, Thailand
| | - Somboon Tanasupawat
- Department of Biochemistry and Microbiology, Faculty of Pharmaceutical Sciences, Chulalongkorn University, 254 Phayathai Road, Pathumwan, Bangkok, 10330, Thailand
| | - Ancharida Savarajara
- Department of Microbiology, Faculty of Science, Chulalongkorn University, 254 Phayathai Road, Pathumwan, Bangkok, 10330, Thailand.
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Changes in the functional feeding groups of macrobenthic fauna during mangrove forest succession in Zhanjiang, China. Ecol Res 2018. [DOI: 10.1007/s11284-018-1603-3] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/17/2022]
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Chen Q, Li J, Zhao Q, Jian S, Ren H. Changes in the benthic protozoan community during succession of a mangrove ecosystem in Zhanjiang, China. Ecosphere 2018. [DOI: 10.1002/ecs2.2190] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022] Open
Affiliation(s)
- Quan Chen
- Key Laboratory of Vegetation Restoration and Management of Degraded Ecosystems South China Botanical Garden Chinese Academy of Sciences Guangzhou 510650 China
- Key Laboratory of Marine Ranch Technology Chinese Academy of Fishery Sciences Scientific Observing and Experimental Station of South China Sea Fishery Resources and Environment Ministry of Agriculture Guangdong Provincial Key Laboratory of Fishery Ecology and Environment South China Sea Fisheries Research Institute Chinese Academy of Fishery Sciences Guangzhou 510300 China
| | - Jing Li
- Key Laboratory of Vegetation Restoration and Management of Degraded Ecosystems South China Botanical Garden Chinese Academy of Sciences Guangzhou 510650 China
| | - Qian Zhao
- Key Laboratory of Vegetation Restoration and Management of Degraded Ecosystems South China Botanical Garden Chinese Academy of Sciences Guangzhou 510650 China
- College of Forestry and Landscape Architecture South China Agricultural University Guangzhou 510642 China
| | - Shuguang Jian
- Key Laboratory of Vegetation Restoration and Management of Degraded Ecosystems South China Botanical Garden Chinese Academy of Sciences Guangzhou 510650 China
| | - Hai Ren
- Key Laboratory of Vegetation Restoration and Management of Degraded Ecosystems South China Botanical Garden Chinese Academy of Sciences Guangzhou 510650 China
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38
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Wang Q, Lu H, Chen J, Hong H, Liu J, Li J, Yan C. Spatial distribution of glomalin-related soil protein and its relationship with sediment carbon sequestration across a mangrove forest. THE SCIENCE OF THE TOTAL ENVIRONMENT 2018; 613-614:548-556. [PMID: 28926809 DOI: 10.1016/j.scitotenv.2017.09.140] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/25/2017] [Revised: 09/12/2017] [Accepted: 09/14/2017] [Indexed: 06/07/2023]
Abstract
Arbuscular mycorrhizal (AM) fungi produce a recalcitrant glycoprotein, (glomalin-related soil protein (GRSP)), which can contribute to soil carbon sequestration. Here we made a first study to characterize the spatial distribution of GRSP fractions in a mangrove forest at Zhangjiang Estuary, Southeastern China and to explore potential contributions of GRSP to sediment organic carbon (SOC) in this forest. We identified GRSP fractions in surface sediments, as well as those at a depth of 50 cm. The contents of easily extractable GRSP (EE-GRSP), total GRSP (T-GRSP), GRSP in particulate organic matter (POM-GRSP) and GRSP in pore water (PW-GRSP) ranged between 1.20-2.22mgg-1, 1.38-2.61mgg-1, 1.45-10.78mgg-1 and 10.35-39.65mgL-1 respectively, and these four GRSPs are significantly affected by sample sites and sediment layers. Carbon in GRSP accounted for 2.8-5.9% of SOC and its contributions can far exceed that of microbial biomass carbon (0.21-0.73%) in the 0-50cm sediment layers. Our data indicate that GRSP could be transported by pore water and accumulated in sediment profiles. The non-linear regression analysis revealed that as SOC and particulate organic carbon (POC) contents decrease, GRSP proportions increase, indicating the increase of the recalcitrant carbon offsetting the effects of mangrove carbon loss, especially labile C. Regression and ordination analyses indicated that GRSP fractions were mainly positively correlated with sediment carbon fractions and spore density but were negatively correlated with sand, pH. Strikingly, the unfavorable environmental factors for microbial organisms, especially AM fungi, prove to be able to promote the production or accumulation of GRSP. We propose that there are two different pathways for affecting the pool size of GRSP in mangrove ecosystems: (i) directly via indigenous AM fungi propagules; (ii) or via the GRSP transport and deposition by pore water and tides.
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Affiliation(s)
- Qiang Wang
- Key Laboratory of Ministry of Education for Coastal and Wetland Ecosystems, Xiamen University, Xiamen 361102, China
| | - Haoliang Lu
- Key Laboratory of Ministry of Education for Coastal and Wetland Ecosystems, Xiamen University, Xiamen 361102, China
| | - Jingyan Chen
- State Key Laboratory of Marine Environmental Science, Xiamen University, Xiamen 361102, China
| | - Hualong Hong
- Key Laboratory of Ministry of Education for Coastal and Wetland Ecosystems, Xiamen University, Xiamen 361102, China
| | - Jingchun Liu
- Key Laboratory of Ministry of Education for Coastal and Wetland Ecosystems, Xiamen University, Xiamen 361102, China
| | - Junwei Li
- Key Laboratory of Ministry of Education for Coastal and Wetland Ecosystems, Xiamen University, Xiamen 361102, China
| | - Chongling Yan
- Key Laboratory of Ministry of Education for Coastal and Wetland Ecosystems, Xiamen University, Xiamen 361102, China; State Key Laboratory of Marine Environmental Science, Xiamen University, Xiamen 361102, China.
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39
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Anthropogenic protection alters the microbiome in intertidal mangrove wetlands in Hainan Island. Appl Microbiol Biotechnol 2017; 101:6241-6252. [DOI: 10.1007/s00253-017-8342-1] [Citation(s) in RCA: 21] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/16/2016] [Revised: 05/05/2017] [Accepted: 05/09/2017] [Indexed: 01/30/2023]
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40
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Sousa MMDE, Colpo KD. Diversity and distribution of epiphytic bromeliads in a Brazilian subtropical mangrove. AN ACAD BRAS CIENC 2017; 89:1085-1093. [PMID: 28489202 DOI: 10.1590/0001-3765201720160702] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/17/2016] [Accepted: 12/19/2016] [Indexed: 11/22/2022] Open
Abstract
It is not unusual to find epiphytic bromeliads in mangroves, but most studies on mangrove vegetation do not record their presence. This study aimed to evaluate the diversity and distribution of epiphytic bromeliads in a subtropical mangrove. The richness, abundance and life form (atmospheric and tank) of bromeliads were recorded and compared among host tree species and waterline proximity. The effects of diameter and height of host trees on the abundance of bromeliads were also assessed. The mangrove was composed of Avicennia schaueriana, Laguncularia racemosa and Rhizophora mangle. We recorded seven bromeliad species of the genera Tillandsia and Vriesea. The waterline proximity did not affect the abundance or diversity of bromeliads, but atmospheric forms were predominant near the waterline, whereas tank bromeliads were more frequent in the interior of the mangrove. The three mangrove species hosted bromeliads, but L. racemosa was the preferred host. The species composition showed that the distribution of bromeliads is more related to the host species than to the distance from the waterline. Bromeliad abundance increased with tree size. Bromeliads can be biological indicators of ecosystem health; therefore, inventories and host tree preferences are necessary knowledge for an adequate management of sensitive ecosystems as mangroves.
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Affiliation(s)
- Mariana M DE Sousa
- Universidade Estadual Paulista "Júlio de Mesquita Filho"/ UNESP, Instituto de Biociências, Campus do Litoral Paulista, Praça Infante Dom Henrique, s/n, Parque Bitaru, Caixa Postal 73601, 11380-972 São Vicente, SP, Brazil
| | - Karine D Colpo
- Instituto de Limnología Dr. Raúl A. Ringuelet - ILPLA, CONICET, UNLP, Boulevard 120 & 60. La Plata, Buenos Aires, CP 1900, Argentina
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Ma ZP, Lao YM, Jin H, Lin GH, Cai ZH, Zhou J. Diverse Profiles of AI-1 Type Quorum Sensing Molecules in Cultivable Bacteria from the Mangrove ( Kandelia obovata) Rhizosphere Environment. Front Microbiol 2016; 7:1957. [PMID: 27994584 PMCID: PMC5136546 DOI: 10.3389/fmicb.2016.01957] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/28/2016] [Accepted: 11/22/2016] [Indexed: 11/25/2022] Open
Abstract
Mangrove rhizosphere environment harbors diverse populations of microbes, and some evidence showed that rhizobacteria behavior was regulated by quorum sensing (QS). Investigating the diverse profiles of QS molecules in mangrove ecosystems may shed light on the bacterial roles and lead to a better understanding of the symbiotic interactions between plants and microbes. The aims of the current study focus on identifying AI-1 type QS signals, i.e., acyl homoserine lactones (AHLs), in Kandelia obovata rhizosphere environment. Approximately 1200 rhizobacteria were screened and 184 strains (15.3%) tested were positive. Subsequent 16s rRNA gene sequencing and dereplication analyses identified 24 species from the positive isolates, which were affiliated to three different phyla, including Proteobacteria, Firmicutes, and Actinobacteria. Thin-layer chromatography separation of extracts revealed diverse AHL profiles and detected at least one active compound in the supernatant of these 24 cultivable AHL-producers. The active extracts from these bacterial isolates were further evaluated by ultra performance liquid chromatography-mass spectrometry, and the carbon side chain length ranged from C4 to C14. This is the first report on the diversity of AI-1 type auto-inducers in the mangrove plant K. obovata, and it is imperative to expand our knowledge of plant-bacteria interactions with respect to the maintenance of wetland ecosystem health.
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Affiliation(s)
- Zhi P Ma
- The Division of Ocean Science and Technology, Graduate School at Shenzhen, Tsinghua UniversityShenzhen, China; Shenzhen Public Platform for Screening and Application of Marine Microbial ResourcesShenzhen, China
| | - Yong M Lao
- The Division of Ocean Science and Technology, Graduate School at Shenzhen, Tsinghua UniversityShenzhen, China; Shenzhen Public Platform for Screening and Application of Marine Microbial ResourcesShenzhen, China
| | - Hui Jin
- The Division of Ocean Science and Technology, Graduate School at Shenzhen, Tsinghua UniversityShenzhen, China; Shenzhen Public Platform for Screening and Application of Marine Microbial ResourcesShenzhen, China
| | - Guang H Lin
- The Division of Ocean Science and Technology, Graduate School at Shenzhen, Tsinghua University Shenzhen, China
| | - Zhong H Cai
- The Division of Ocean Science and Technology, Graduate School at Shenzhen, Tsinghua UniversityShenzhen, China; Shenzhen Public Platform for Screening and Application of Marine Microbial ResourcesShenzhen, China
| | - Jin Zhou
- The Division of Ocean Science and Technology, Graduate School at Shenzhen, Tsinghua UniversityShenzhen, China; Shenzhen Public Platform for Screening and Application of Marine Microbial ResourcesShenzhen, China
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