1
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Hillers-Bendtsen AE, Martínez TJ. Lowering the Scaling of Self-Consistent Field Methods by Combining Tensor Hypercontraction and a Density Difference Ansatz. J Phys Chem Lett 2025; 16:4734-4739. [PMID: 40325909 DOI: 10.1021/acs.jpclett.5c00405] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/07/2025]
Abstract
We present the tensor hypercontraction difference self-consistent field (SCF) method, an approach that reduces the formal computational scaling of traditional naive self-consistent field methods from O ( N 4 ) to O ( N 3 ) with system size N . The scaling reduction is achieved by developing a new technique for constructing the tensor hypercontraction decomposition based on the fundamental approximation made in density fitting. Combining this scheme with the difference self-consistent field methodology, we achieve a method that enables O ( N 3 ) scaling SCF calculations with only O ( N 2 ) storage requirements. Our proof-of-concept numerical tests demonstrate robust performance with errors in total energies below 8 × 10-4 Eh and with sub 1 kcal/mol errors for relative energies.
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Affiliation(s)
- Andreas Erbs Hillers-Bendtsen
- Department of Chemistry and The PULSE Institute, Stanford University, Stanford, California 94305, United States
- SLAC National Accelerator Laboratory, 2575 Sand Hill Road, Menlo Park, California 94025, United States
| | - Todd J Martínez
- Department of Chemistry and The PULSE Institute, Stanford University, Stanford, California 94305, United States
- SLAC National Accelerator Laboratory, 2575 Sand Hill Road, Menlo Park, California 94025, United States
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2
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Baerends EJ, Aguirre NF, Austin ND, Autschbach J, Bickelhaupt FM, Bulo R, Cappelli C, van Duin ACT, Egidi F, Fonseca Guerra C, Förster A, Franchini M, Goumans TPM, Heine T, Hellström M, Jacob CR, Jensen L, Krykunov M, van Lenthe E, Michalak A, Mitoraj MM, Neugebauer J, Nicu VP, Philipsen P, Ramanantoanina H, Rüger R, Schreckenbach G, Stener M, Swart M, Thijssen JM, Trnka T, Visscher L, Yakovlev A, van Gisbergen S. The Amsterdam Modeling Suite. J Chem Phys 2025; 162:162501. [PMID: 40260801 DOI: 10.1063/5.0258496] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/16/2025] [Accepted: 03/28/2025] [Indexed: 04/24/2025] Open
Abstract
In this paper, we present the Amsterdam Modeling Suite (AMS), a comprehensive software platform designed to support advanced molecular and materials simulations across a wide range of chemical and physical systems. AMS integrates cutting-edge quantum chemical methods, including Density Functional Theory (DFT) and time-dependent DFT, with molecular mechanics, fluid thermodynamics, machine learning techniques, and more, to enable multi-scale modeling of complex chemical systems. Its design philosophy allows for seamless coupling between components, facilitating simulations that range from small molecules to complex biomolecular and solid-state systems, making it a versatile tool for tackling interdisciplinary challenges, both in industry and in academia. The suite also emphasizes user accessibility, with an intuitive graphical interface, extensive scripting capabilities, and compatibility with high-performance computing environments.
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Affiliation(s)
- Evert Jan Baerends
- Vrije Universiteit Amsterdam, De Boelelaan 1105, 1081 HV Amsterdam, The Netherlands
| | - Nestor F Aguirre
- Software for Chemistry & Materials BV, De Boelelaan 1109, 1081HV Amsterdam, The Netherlands
| | - Nick D Austin
- Software for Chemistry & Materials BV, De Boelelaan 1109, 1081HV Amsterdam, The Netherlands
| | - Jochen Autschbach
- Department of Chemistry, University at Buffalo State University of New York, Buffalo, New York 14260-3000, USA
| | - F Matthias Bickelhaupt
- Vrije Universiteit Amsterdam, De Boelelaan 1105, 1081 HV Amsterdam, The Netherlands
- Institute for Molecules and Materials, Radboud University Nijmegen, Heyendaalseweg 135, 6525 AJ Nijmegen, The Netherlands
- Department of Chemical Sciences, University of Johannesburg, Auckland Park, Johannesburg 2006, South Africa
| | - Rosa Bulo
- Software for Chemistry & Materials BV, De Boelelaan 1109, 1081HV Amsterdam, The Netherlands
| | - Chiara Cappelli
- Scuola Normale Superiore, Piazza dei Cavalieri 7, 56126 Pisa, Italy
- IMT School for Advanced Studies Lucca, Piazza San Francesco 19, I-55100 Lucca, Italy
| | - Adri C T van Duin
- Department of Mechanical Engineering, The Pennsylvania State University, University Park, Pennsylvania 16802, USA
| | - Franco Egidi
- Software for Chemistry & Materials BV, De Boelelaan 1109, 1081HV Amsterdam, The Netherlands
| | - Célia Fonseca Guerra
- Vrije Universiteit Amsterdam, De Boelelaan 1105, 1081 HV Amsterdam, The Netherlands
| | - Arno Förster
- Vrije Universiteit Amsterdam, De Boelelaan 1105, 1081 HV Amsterdam, The Netherlands
| | - Mirko Franchini
- Software for Chemistry & Materials BV, De Boelelaan 1109, 1081HV Amsterdam, The Netherlands
| | - Theodorus P M Goumans
- Software for Chemistry & Materials BV, De Boelelaan 1109, 1081HV Amsterdam, The Netherlands
| | - Thomas Heine
- Faculty of Chemistry and Food Chemistry, TU Dresden, Bergstraße 66c, 01069 Dresden, Germany
| | - Matti Hellström
- Software for Chemistry & Materials BV, De Boelelaan 1109, 1081HV Amsterdam, The Netherlands
| | - Christoph R Jacob
- Institute of Physical and Theoretical Chemistry, Technische Universität Braunschweig, Gaußstraße 17, 38106 Braunschweig, Germany
| | - Lasse Jensen
- Department of Chemistry, The Pennsylvania State University, 104 Benkovic Building, University Park, Pennsylvania 16802, USA
| | - Mykhaylo Krykunov
- Insilico Medicine AI Limited, Level 6, Unit 08, Block A, IRENA HQ Building, Masdar City, P.O. Box 145748, Abu Dhabi, United Arab Emirates
| | - Erik van Lenthe
- Software for Chemistry & Materials BV, De Boelelaan 1109, 1081HV Amsterdam, The Netherlands
| | - Artur Michalak
- Jagiellonian University, Faculty of Chemistry, Gronostajowa 2, 30-387 Kraków, Poland
| | - Mariusz M Mitoraj
- Jagiellonian University, Faculty of Chemistry, Gronostajowa 2, 30-387 Kraków, Poland
| | - Johannes Neugebauer
- Universität Münster, Organisch-Chemisches Institut and Center for Multiscale Theory and Computation, Corrensstraße 36, 48149 Münster, Germany
| | | | - Pier Philipsen
- Software for Chemistry & Materials BV, De Boelelaan 1109, 1081HV Amsterdam, The Netherlands
| | - Harry Ramanantoanina
- Department Chemie, Johannes Gutenberg-Universität, Fritz-Strassmann Weg 2, 55128 Mainz, Germany
| | - Robert Rüger
- Software for Chemistry & Materials BV, De Boelelaan 1109, 1081HV Amsterdam, The Netherlands
| | - Georg Schreckenbach
- Department of Chemistry, University of Manitoba, Winnipeg, Manitoba R3T 2N2, Canada
| | - Mauro Stener
- Dipartimento di Scienze Chimiche e Farmaceutiche, Università degli studi di Trieste, Via Giorgieri 1, 34127 Trieste, Italy
| | - Marcel Swart
- ICREA, Pg. Lluís Companys 23, 08010 Barcelona, Spain
- IQCC and Department Química, Universitat de Girona, Campus Montilivi, 17003 Girona, Spain
| | - Jos M Thijssen
- Kavli Institute of Nanoscience, Delft University of Technology, 2628 CJ Delft, The Netherlands
| | - Tomáš Trnka
- Software for Chemistry & Materials BV, De Boelelaan 1109, 1081HV Amsterdam, The Netherlands
- National Centre for Biomolecular Research, Faculty of Science, Masaryk University, Kamenice 5, 625 00 Brno, Czech Republic
| | - Lucas Visscher
- Vrije Universiteit Amsterdam, De Boelelaan 1105, 1081 HV Amsterdam, The Netherlands
| | - Alexei Yakovlev
- Software for Chemistry & Materials BV, De Boelelaan 1109, 1081HV Amsterdam, The Netherlands
| | - Stan van Gisbergen
- Software for Chemistry & Materials BV, De Boelelaan 1109, 1081HV Amsterdam, The Netherlands
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3
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Yin C, Becker SB, Thorpe JH, Matthews DA. Spatial Signatures of Electron Correlation in Least-Squares Tensor Hypercontraction. J Phys Chem A 2025; 129:788-802. [PMID: 39784297 DOI: 10.1021/acs.jpca.4c06666] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/12/2025]
Abstract
Least-squares tensor hypercontraction (LS-THC) has received some attention in recent years as an approach to reduce the significant computational costs of wave function-based methods in quantum chemistry. However, previous work has demonstrated that LS-THC factorization performs disproportionately worse in the description of wave function components (e.g., cluster amplitudes T̂2) than Hamiltonian components (e.g., electron repulsion integrals (pq|rs)). This work develops novel theoretical methods to study the source of these errors in the context of the real-space T̂2 kernel, and reports, for the first time, the existence of a "correlation feature" in the errors of the LS-THC representation of the "exchange-like" correlation energy EX and T̂2 that is remarkably consistent across ten molecular species, three correlated wave functions, and four basis sets. This correlation feature portends the existence of a "pair point kernel" missing in the usual LS-THC representation of the wave function, which critically depends upon pairs of grid points situated close to atoms and with interpair distances between one and two Bohr radii. These findings point the way for future LS-THC developments to address these shortcomings.
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Affiliation(s)
- Chao Yin
- Department of Chemistry, Southern Methodist University, Dallas, Texas 75275, United States
| | - Sara Beth Becker
- Department of Chemistry, Southern Methodist University, Dallas, Texas 75275, United States
| | - James H Thorpe
- Department of Chemistry, Southern Methodist University, Dallas, Texas 75275, United States
| | - Devin A Matthews
- Department of Chemistry, Southern Methodist University, Dallas, Texas 75275, United States
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4
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Jayasekharan T. Hg-Hg bonding and its influence on the stability of (HgS) n clusters. Phys Chem Chem Phys 2024; 26:23468-23486. [PMID: 39221613 DOI: 10.1039/d4cp02531h] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 09/04/2024]
Abstract
Pulsed laser ablation of a HgS(s) precursor shows the formation of small cluster ions, (HgS)n=2-4+, together with HgSn=1-8± and [(HgS)n + Sm]±. The computed structure, atomization energy, and HOMO-LUMO gap energy values of the lowest energy ring singlet show stable (HgS)n=2-8. However, the computed bond conductance of the Hg-Hg bond in (HgS)n shows a high value for (HgS)n=2-4 (ξ = 1.072-0.122), whereas it is low for (HgS)n=5-8 (ξ = 0.039-0.006) and decreases significantly as the ring expands, indicating that (HgS)n≥5 is unstable. It evidences that the weak chemical bonding between Hg2+-Hg2+ closed shell (5d10-5d10) electrons plays a significant role in the stability of ring (HgS)n=2-4. Thus, it validates the experimental observation of stable cluster ions up to (HgS)4+. In contrast, the low energy chain triplet (HgS)n=2-8 shows a progressive increase in stability and bond conductance with chain length, indicating sustained mercurophilic interactions in long chain clusters like its crystal structure. Furthermore, the lowest/low energy isomers of HgSn=1-8 have been computed for their energetics, HOMO-LUMO gaps, and electron affinity using DFT-B3LYP/PBE0 methods.
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Affiliation(s)
- Thankan Jayasekharan
- Atomic and Molecular Physics Division, Physics Group Bhabha Atomic Research Centre Trombay, Mumbai-400085, India.
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5
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Stocks R, Palethorpe E, Barca GMJ. Multi-GPU RI-HF Energies and Analytic Gradients─Toward High-Throughput Ab Initio Molecular Dynamics. J Chem Theory Comput 2024; 20:7503-7515. [PMID: 39192710 DOI: 10.1021/acs.jctc.4c00877] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 08/29/2024]
Abstract
This article presents an optimized algorithm and implementation for calculating resolution-of-the-identity Hartree-Fock (RI-HF) energies and analytic gradients using multiple graphics processing units (GPUs). The algorithm is especially designed for high throughput ab initio molecular dynamics simulations of small and medium size molecules (10-100 atoms). Key innovations of this work include the exploitation of multi-GPU parallelism and a workload balancing scheme that efficiently distributes computational tasks among GPUs. Our implementation also employs techniques for symmetry utilization, integral screening, and leveraging sparsity to optimize memory usage. Computational results show that the implementation achieves significant performance improvements, including over 3 × speedups in single GPU AIMD throughput compared to previous GPU-accelerated RI-HF and traditional HF methods. Furthermore, utilizing multiple GPUs can provide superlinear speedup when the additional aggregate GPU memory allows for the storage of decompressed three-center integrals.
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Affiliation(s)
- Ryan Stocks
- School of Computing, Australian National University, Canberra, ACT 2601, Australia
| | - Elise Palethorpe
- School of Computing, Australian National University, Canberra, ACT 2601, Australia
| | - Giuseppe M J Barca
- School of Computing and Information Systems, Melbourne University, Melbourne, VIC 3052, Australia
- QDX Technologies, Dickson, ACT 2602, Australia
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6
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Sereda M, Allen T, Bradbury NC, Ibrahim KZ, Neuhauser D. Sparse-Stochastic Fragmented Exchange for Large-Scale Hybrid Time-Dependent Density Functional Theory Calculations. J Chem Theory Comput 2024; 20:4196-4204. [PMID: 38713513 DOI: 10.1021/acs.jctc.4c00260] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/09/2024]
Abstract
We extend our recently developed sparse-stochastic fragmented exchange formalism for ground-state near-gap hybrid DFT to calculate absorption spectra within linear-response time-dependent generalized Kohn-Sham DFT (LR-GKS-TDDFT) for systems consisting of thousands of valence electrons within a grid-based/plane-wave representation. A mixed deterministic/fragmented-stochastic compression of the exchange kernel, here using long-range explicit exchange functionals, provides an efficient method for accurate optical spectra. Both real-time propagation as well as frequency-resolved Casida-equation-type approaches for spectra are presented, and the method is applied to large molecular dyes.
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Affiliation(s)
- Mykola Sereda
- Department of Chemistry and Biochemistry, and California Nanoscience Institute, UCLA, Los Angeles, California 90095-1569, United States
| | - Tucker Allen
- Department of Chemistry and Biochemistry, and California Nanoscience Institute, UCLA, Los Angeles, California 90095-1569, United States
| | - Nadine C Bradbury
- Department of Chemistry and Biochemistry, and California Nanoscience Institute, UCLA, Los Angeles, California 90095-1569, United States
| | - Khaled Z Ibrahim
- Computer Science Department, Lawrence Berkeley National Laboratory, One Cyclotron Road, Berkeley, California 94720, United States
| | - Daniel Neuhauser
- Department of Chemistry and Biochemistry, and California Nanoscience Institute, UCLA, Los Angeles, California 90095-1569, United States
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7
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Sethio D, Azzopardi E, Fdez. Galván I, Lindh R. A Story of Three Levels of Sophistication in SCF/KS-DFT Orbital Optimization Procedures. J Phys Chem A 2024; 128:2472-2486. [PMID: 38483190 PMCID: PMC10983011 DOI: 10.1021/acs.jpca.3c07647] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/20/2023] [Revised: 02/23/2024] [Accepted: 02/23/2024] [Indexed: 04/04/2024]
Abstract
In this work, three versions of self-consistent field/Kohn-Sham density functional theory (SCF/KS-DFT) orbital optimization are described and benchmarked. The methods are a modified version of the geometry version of the direct inversion in the iterative subspace approach (which we call r-GDIIS), the modified restricted step rational function optimization method (RS-RFO), and the novel subspace gradient-enhanced Kriging method combined with restricted variance optimization (S-GEK/RVO). The modifications introduced are aimed at improving the robustness and computational scaling of the procedures. In particular, the subspace approach in S-GEK/RVO allows the application to SCF/KS-DFT optimization of a machine learning technique that has proven to be successful in geometry optimizations. The performance of the three methods is benchmarked for a large number of small- to medium-sized organic molecules, at equilibrium structures and close to a transition state, and a second set of molecules containing closed- and open-shell transition metals. The results indicate the importance of the resetting technique in boosting the performance of the r-GDIIS procedure. Moreover, it is demonstrated that already at the inception of the subspace version of GEK to optimize SCF wave functions, it displays superior and robust convergence properties as compared to those of the standard state-of-the-art SCF/KS-DFT optimization methods.
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Affiliation(s)
- Daniel Sethio
- Department
of Chemistry—BMC, Uppsala University, P.O. Box 576, SE-75123 Uppsala, Sweden
- Department
of Chemistry—Ångström, Uppsala University, P.O. Box 538, SE-75121 Uppsala, Sweden
| | - Emily Azzopardi
- Department
of Chemistry—BMC, Uppsala University, P.O. Box 576, SE-75123 Uppsala, Sweden
| | - Ignacio Fdez. Galván
- Department
of Chemistry—BMC, Uppsala University, P.O. Box 576, SE-75123 Uppsala, Sweden
| | - Roland Lindh
- Department
of Chemistry—BMC, Uppsala University, P.O. Box 576, SE-75123 Uppsala, Sweden
- Uppsala
Center for Computational Chemistry (UC3), Uppsala University, P.O. Box 576, SE-751 23 Uppsala, Sweden
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8
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Song C. New physical insights into the supporting subspace factorization of XMS-CASPT2 and generalization to multiple spin states via spin-free formulation. J Chem Phys 2024; 160:124106. [PMID: 38526101 DOI: 10.1063/5.0192478] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/19/2023] [Accepted: 03/07/2024] [Indexed: 03/26/2024] Open
Abstract
This paper introduces a spin-free formulation of the supporting subspace factorization [C. Song and T. J. Martínez, J. Chem. Phys. 149, 044108 (2018)], enabling a reduction in the computational scaling of the extended multi-state complete active space second-order perturbation (XMS-CASPT2) method for arbitrary spins. Compared to the original formulation that is defined in the spin orbitals and is limited to singlet states, the spin-free formulation in this work treats different spin states equivalently, thus naturally generalizing the idea beyond singlet states. In addition, we will present a new way of deriving the supporting subspace factorization with the purpose of understanding its physical interpretation. In this new derivation, we separate the sources that make CASPT2 difficult into the "same-site interactions" and "inter-site interactions." We will first show how the Kronecker sum can be used to remove the same-site interactions in the absence of inter-site interactions, leading to MP2 energy in dressed orbitals. We will then show how the inter-site interactions can be exactly recovered using Löwdin partition, where the supporting subspace concept will naturally arise. The new spin-free formulation maintains the main advantage of the supporting subspace factorization, i.e., allowing XMS-CASPT2 energies to be computed using highly optimized MP2 energy codes and Fock build codes, thus reducing the scaling of XMS-CASPT2 to the same scaling as MP2. We will present and discuss results that benchmark the accuracy and performance of the new method. To demonstrate how the new method can be useful in studying real photochemical systems, the supporting subspace XMS-CASPT2 is applied to a photoreaction sensitive to magnetic field effects. The new spin-free formulation makes it possible to calculate the doublet and quartet states required in this particular photoreaction mechanism.
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Affiliation(s)
- Chenchen Song
- Department of Chemistry, University of California Davis, 1 Shields Ave., Davis, California 95616, USA
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9
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Hart CA, Schlimgen AW, Dao DB, Head-Marsden K, Mabbs R. The overlooked role of excited anion states in NiO2- photodetachment. J Chem Phys 2024; 160:044304. [PMID: 38258918 DOI: 10.1063/5.0188066] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/18/2023] [Accepted: 01/01/2024] [Indexed: 01/24/2024] Open
Abstract
Photodetachment spectra of anionic species provide significant insights into the energies and nature of ground and excited states of both the anion and resultant neutral molecules. Direct detachment of the excess electron to the continuum may occur via formally allowed or forbidden transitions (perhaps as the result of intensity borrowing through vibronic coupling). However, alternate indirect pathways are also possible and often overlooked. Here, we report a two-dimensional photoelectron spectral study, combined with correlated electronic structure calculations, to elucidate the nature of photodetachment from NiO2-. The spectra are comprised of allowed and forbidden transitions, in excellent agreement with previously reported slow electron velocity mapped imaging spectra of the same system, which were interpreted in terms of direct detachment. In the current work, the contributions of indirect processes are revealed. Measured oscillations in the branching ratios of the spectral channels clearly indicate non-direct detachment processes, and the electronic structure calculations suggest that excited states of the appropriate symmetry and degeneracy lie slightly above the neutral ground state. Taken together, the results suggest that the origin of the observed forbidden transitions is the result of anion excited states mediating the electron detachment process.
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Affiliation(s)
- C Annie Hart
- Department of Chemistry, Washington University in St. Louis, St. Louis, Missouri 63130-4862, USA
| | - Anthony W Schlimgen
- Department of Chemistry, Washington University in St. Louis, St. Louis, Missouri 63130-4862, USA
| | - Diep Bich Dao
- Department of Chemistry, Washington University in St. Louis, St. Louis, Missouri 63130-4862, USA
| | - Kade Head-Marsden
- Department of Chemistry, Washington University in St. Louis, St. Louis, Missouri 63130-4862, USA
| | - Richard Mabbs
- Department of Chemistry, Washington University in St. Louis, St. Louis, Missouri 63130-4862, USA
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10
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Yuan X, Halbert L, Pototschnig JV, Papadopoulos A, Coriani S, Visscher L, Pereira Gomes AS. Formulation and Implementation of Frequency-Dependent Linear Response Properties with Relativistic Coupled Cluster Theory for GPU-Accelerated Computer Architectures. J Chem Theory Comput 2024; 20:677-694. [PMID: 38193434 DOI: 10.1021/acs.jctc.3c00812] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/10/2024]
Abstract
We present the development and implementation of relativistic coupled cluster linear response theory (CC-LR), which allows the determination of molecular properties arising from time-dependent or time-independent electric, magnetic, or mixed electric-magnetic perturbations (within a common gauge origin for the magnetic properties) as well as taking into account the finite lifetime of excited states in the framework of damped response theory. We showcase our implementation, which is capable to offload the computationally intensive tensor contractions characteristic of coupled cluster theory onto graphical processing units, in the calculation of (a) frequency-(in)dependent dipole-dipole polarizabilities of IIB atoms and selected diatomic molecules, with a particular emphasis on the calculation of valence absorption cross sections for the I2 molecule; (b) indirect spin-spin coupling constants for benchmark systems such as the hydrogen halides (HX, X = F-I) as well the H2Se-H2O dimer as a prototypical system containing hydrogen bonds; and (c) optical rotations at the sodium D line for hydrogen peroxide analogues (H2Y2, Y = O, S, Se, Te). Thanks to this implementation, we are able to show the similarities in performance, but often the significant discrepancies, between CC-LR and approximate methods such as density functional theory. Comparing standard CC response theory with the flavor based upon the equation of motion formalism, we find that for valence properties such as polarizabilities, the two frameworks yield very similar results across the periodic table as found elsewhere in the literature; for properties that probe the core region, such as spin-spin couplings, on the other hand, we show a progressive differentiation between the two as relativistic effects become more important. Our results also suggest that as one goes down the periodic table, it may become increasingly difficult to measure pure optical rotation at the sodium D line due to the appearance of absorbing states.
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Affiliation(s)
- Xiang Yuan
- Univ. Lille, CNRS, UMR 8523─PhLAM─Physique des Lasers Atomes et Molécules, F-59000 Lille, France
- Department of Chemistry and Pharmaceutical Sciences, Faculty of Science, Vrije Universiteit Amsterdam, 1081 HV Amsterdam, The Netherlands
| | - Loïc Halbert
- Univ. Lille, CNRS, UMR 8523─PhLAM─Physique des Lasers Atomes et Molécules, F-59000 Lille, France
| | - Johann Valentin Pototschnig
- Department of Chemistry and Pharmaceutical Sciences, Faculty of Science, Vrije Universiteit Amsterdam, 1081 HV Amsterdam, The Netherlands
| | - Anastasios Papadopoulos
- Department of Chemistry and Pharmaceutical Sciences, Faculty of Science, Vrije Universiteit Amsterdam, 1081 HV Amsterdam, The Netherlands
| | - Sonia Coriani
- DTU Chemistry─Department of Chemistry, Technical University of Denmark, DK-2800 Kongens Lyngby, Denmark
| | - Lucas Visscher
- Department of Chemistry and Pharmaceutical Sciences, Faculty of Science, Vrije Universiteit Amsterdam, 1081 HV Amsterdam, The Netherlands
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11
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Bradbury NC, Allen T, Nguyen M, Neuhauser D. Deterministic/Fragmented-Stochastic Exchange for Large-Scale Hybrid DFT Calculations. J Chem Theory Comput 2023; 19:9239-9247. [PMID: 38051791 DOI: 10.1021/acs.jctc.3c00987] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/07/2023]
Abstract
We develop an efficient approach to evaluate range-separated exact exchange for grid- or plane-wave-based representations within the generalized Kohn-Sham-density functional theory (GKS-DFT) framework. The Coulomb kernel is fragmented in reciprocal space, and we employ a mixed deterministic-stochastic representation, retaining long-wavelength (low-k) contributions deterministically and using a sparse ("fragmented") stochastic basis for the high-k part. Coupled with a projection of the Hamiltonian onto a subspace of valence and conduction states from a prior local-DFT calculation, this method allows for the calculation of the long-range exchange of large molecular systems with hundreds and potentially thousands of coupled valence states delocalized over millions of grid points. We find that even a small number of valence and conduction states is sufficient for converging the HOMO and LUMO energies of the GKS-DFT. Excellent tuning of long-range separated hybrids (RSH) is easily obtained in the method for very large systems, as exemplified here for the chlorophyll hexamer of Photosystem II with 1320 electrons.
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Affiliation(s)
- Nadine C Bradbury
- Department of Chemistry and Biochemistry, University of California, Los Angeles, California 90095, United States
| | - Tucker Allen
- Department of Chemistry and Biochemistry, University of California, Los Angeles, California 90095, United States
| | - Minh Nguyen
- Department of Chemistry and Biochemistry, University of California, Los Angeles, California 90095, United States
| | - Daniel Neuhauser
- Department of Chemistry and Biochemistry, University of California, Los Angeles, California 90095, United States
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12
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Yuan X, Halbert L, Visscher L, Pereira Gomes AS. Frequency-Dependent Quadratic Response Properties and Two-Photon Absorption from Relativistic Equation-of-Motion Coupled Cluster Theory. J Chem Theory Comput 2023; 19:9248-9259. [PMID: 38079602 DOI: 10.1021/acs.jctc.3c01011] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/27/2023]
Abstract
We present the implementation of quadratic response theory based upon the relativistic equation-of-motion coupled cluster method. We showcase our implementation, whose generality allows us to consider both time-dependent and time-independent electric and magnetic perturbations, by considering the static and frequency-dependent hyperpolarizability of hydrogen halides (HX, X = F-At), providing comprehensive insights into their electronic response characteristics. Additionally, we evaluated the Verdet constant for noble gases Xe and Rn and discussed the relative importance of relativistic and electron correlation effects for these magneto-optical properties. Finally, we calculate the two-photon absorption cross sections of transition [ns1S0 → (n + 1)s1S0] of Ga+ and In+, which are suggested as candidates for new ion clocks. As our implementation allows for the use of nonrelativistic Hamiltonians as well, we have compared our EOM-QRCC results to the QR-CC implementation in the DALTON code and show that the differences between CC and EOMCC response are in general smaller than 5% for the properties considered. Collectively, the results underscore the versatility of our implementation and its potential as a benchmark tool for other approximated models, such as density functional theory for higher-order properties.
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Affiliation(s)
- Xiang Yuan
- Physique des Lasers Atomes et Molecules, Universite de Lille, F-59000 Lille, France
- Department of Chemistry and Pharmaceutical Sciences, Faculty of Science, Vrije Universiteit Amsterdam, 1081 HV Amsterdam, The Netherlands
| | - Loïc Halbert
- Physique des Lasers Atomes et Molecules, Universite de Lille, F-59000 Lille, France
| | - Lucas Visscher
- Department of Chemistry and Pharmaceutical Sciences, Faculty of Science, Vrije Universiteit Amsterdam, 1081 HV Amsterdam, The Netherlands
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13
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White SR, Lindsey MJ. Nested gausslet basis sets. J Chem Phys 2023; 159:234112. [PMID: 38108488 DOI: 10.1063/5.0180092] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/06/2023] [Accepted: 11/26/2023] [Indexed: 12/19/2023] Open
Abstract
We introduce nested gausslet bases, an improvement on previous gausslet bases that can treat systems containing atoms with much larger atomic numbers. We also introduce pure Gaussian distorted gausslet bases, which allow the Hamiltonian integrals to be performed analytically, as well as hybrid bases in which the gausslets are combined with standard Gaussian-type bases. All these bases feature the diagonal approximation for the electron-electron interactions so that the Hamiltonian is completely defined by two Nb × Nb matrices, where Nb ≈ 104 is small enough to permit fast calculations at the Hartree-Fock level. In constructing these bases, we have gained new mathematical insight into the construction of one-dimensional diagonal bases. In particular, we have proved an important theorem relating four key basis set properties: completeness, orthogonality, zero-moment conditions, and diagonalization of the coordinate operator matrix. We test our basis sets on small systems with a focus on high accuracy, obtaining, for example, an accuracy of 2 × 10-5 Ha for the total Hartree-Fock energy of the neon atom in the complete basis set limit.
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Affiliation(s)
- Steven R White
- Department of Physics and Astronomy, University of California, Irvine, California 92697-4575, USA
| | - Michael J Lindsey
- Department of Mathematics, University of California, Berkeley, California 94720, USA
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14
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Cuéllar-Zuquin J, Pepino AJ, Fdez. Galván I, Rivalta I, Aquilante F, Garavelli M, Lindh R, Segarra-Martí J. Characterizing Conical Intersections in DNA/RNA Nucleobases with Multiconfigurational Wave Functions of Varying Active Space Size. J Chem Theory Comput 2023; 19:8258-8272. [PMID: 37882796 PMCID: PMC10851440 DOI: 10.1021/acs.jctc.3c00577] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/30/2023] [Revised: 10/13/2023] [Accepted: 10/13/2023] [Indexed: 10/27/2023]
Abstract
We characterize the photochemically relevant conical intersections between the lowest-lying accessible electronic excited states of the different DNA/RNA nucleobases using Cholesky decomposition-based complete active space self-consistent field (CASSCF) algorithms. We benchmark two different basis set contractions and several active spaces for each nucleobase and conical intersection type, measuring for the first time how active space size affects conical intersection topographies in these systems and the potential implications these may have toward their description of photoinduced phenomena. Our results show that conical intersection topographies are highly sensitive to the electron correlation included in the model: by changing the amount (and type) of correlated orbitals, conical intersection topographies vastly change, and the changes observed do not follow any converging pattern toward the topographies obtained with the largest and most correlated active spaces. Comparison across systems shows analogous topographies for almost all intersections mediating population transfer to the dark 1nO/Nπ* states, while no similarities are observed for the "ethylene-like" conical intersection ascribed to mediate the ultrafast decay component to the ground state in all DNA/RNA nucleobases. Basis set size seems to have a minor effect, appearing to be relevant only for purine-based derivatives. We rule out structural changes as a key factor in classifying the different conical intersections, which display almost identical geometries across active space and basis set change, and we highlight instead the importance of correctly describing the electronic states involved at these crossing points. Our work shows that careful active space selection is essential to accurately describe conical intersection topographies and therefore to adequately account for their active role in molecular photochemistry.
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Affiliation(s)
- Juliana Cuéllar-Zuquin
- Instituto
de Ciencia Molecular, Universitat de Valencia, P.O. Box 22085, ES-46071 Valencia, Spain
| | - Ana Julieta Pepino
- Dipartimento
di Chimica Industriale “Toso Montanari”, Università di Bologna, Viale del Risorgimento 4, I-40136 Bologna, Italy
| | - Ignacio Fdez. Galván
- Department
of Chemistry − BMC, Uppsala University, P.O. Box 576, SE-75123 Uppsala, Sweden
| | - Ivan Rivalta
- Dipartimento
di Chimica Industriale “Toso Montanari”, Università di Bologna, Viale del Risorgimento 4, I-40136 Bologna, Italy
- ENSL,
CNRS, Laboratoire de Chimie UMR 5182, 46 Allée d’Italie, 69364 Lyon, France
| | - Francesco Aquilante
- Theory
and Simulation of Materials (THEOS), and National Centre for Computational
Design and Discovery of Novel Materials (MARVEL), École Polytechnique Fédérale de Lausanne, CH-1015 Lausanne, Switzerland
| | - Marco Garavelli
- Dipartimento
di Chimica Industriale “Toso Montanari”, Università di Bologna, Viale del Risorgimento 4, I-40136 Bologna, Italy
| | - Roland Lindh
- Department
of Chemistry − BMC, Uppsala University, P.O. Box 576, SE-75123 Uppsala, Sweden
| | - Javier Segarra-Martí
- Instituto
de Ciencia Molecular, Universitat de Valencia, P.O. Box 22085, ES-46071 Valencia, Spain
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15
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Kaiser A, Daoud RE, Aquilante F, Kühn O, De Vico L, Bokarev SI. A Multiconfigurational Wave Function Implementation of the Frenkel Exciton Model for Molecular Aggregates. J Chem Theory Comput 2023; 19:2918-2928. [PMID: 37115036 DOI: 10.1021/acs.jctc.3c00185] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/29/2023]
Abstract
We present an implementation of the Frenkel exciton model into the OpenMolcas program package enabling calculations of collective electronic excited states of molecular aggregates based on a multiconfigurational wave function description of the individual monomers. The computational protocol avoids using diabatization schemes and, thus, supermolecule calculations. Additionally, the use of the Cholesky decomposition of the two-electron integrals entering pair interactions enhances the efficiency of the computational scheme. The application of the method is exemplified for two test systems, that is, a formaldehyde oxime and a bacteriochlorophyll-like dimer. For the sake of comparison with the dipole approximation, we restrict our considerations to situations where intermonomer exchange can be neglected. The protocol is expected to be beneficial for aggregates composed of molecules with extended π systems, unpaired electrons such as radicals or transition metal centers, where it should outperform widely used methods based on time-dependent density functional theory.
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Affiliation(s)
- Andy Kaiser
- Institut für Physik, Universität Rostock, Albert-Einstein-Str. 23-24, 18059 Rostock. Germany
| | - Razan E Daoud
- Dipartimento di Biotecnologie, Chimica e Farmacia, Università degli Studi di Siena, Via A. Moro 2, 53100 Siena, Italy
| | - Francesco Aquilante
- Theory and Simulation of Materials (THEOS) and National Centre for Computational Design and Discovery of Novel Materials (MARVEL), École Polytechnique Fédérale de Lausanne (EPFL), CH-1015 Lausanne, Switzerland
| | - Oliver Kühn
- Institut für Physik, Universität Rostock, Albert-Einstein-Str. 23-24, 18059 Rostock. Germany
| | - Luca De Vico
- Dipartimento di Biotecnologie, Chimica e Farmacia, Università degli Studi di Siena, Via A. Moro 2, 53100 Siena, Italy
| | - Sergey I Bokarev
- Institut für Physik, Universität Rostock, Albert-Einstein-Str. 23-24, 18059 Rostock. Germany
- Chemistry Department, Technical University of Munich, Lichtenbergstr. 4, 85748 Garching, Germany
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16
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Pathak H, Panyala A, Peng B, Bauman NP, Mutlu E, Rehr JJ, Vila FD, Kowalski K. Real-Time Equation-of-Motion Coupled-Cluster Cumulant Green's Function Method: Heterogeneous Parallel Implementation Based on the Tensor Algebra for Many-Body Methods Infrastructure. J Chem Theory Comput 2023; 19:2248-2257. [PMID: 37096369 DOI: 10.1021/acs.jctc.3c00045] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/26/2023]
Abstract
We report the implementation of the real-time equation-of-motion coupled-cluster (RT-EOM-CC) cumulant Green's function method [ J. Chem. Phys. 2020, 152, 174113] within the Tensor Algebra for Many-body Methods (TAMM) infrastructure. TAMM is a massively parallel heterogeneous tensor library designed for utilizing forthcoming exascale computing resources. The two-body electron repulsion matrix elements are Cholesky-decomposed, and we imposed spin-explicit forms of the various operators when evaluating the tensor contractions. Unlike our previous real algebra Tensor Contraction Engine (TCE) implementation, the TAMM implementation supports fully complex algebra. The RT-EOM-CC singles (S) and doubles (D) time-dependent amplitudes are propagated using a first-order Adams-Moulton method. This new implementation shows excellent scalability tested up to 500 GPUs using the Zn-porphyrin molecule with 655 basis functions, with parallel efficiencies above 90% up to 400 GPUs. The TAMM RT-EOM-CCSD was used to study core photoemission spectra in the formaldehyde and ethyl trifluoroacetate (ESCA) molecules. Simulations of the latter involve as many as 71 occupied and 649 virtual orbitals. The relative quasiparticle ionization energies and overall spectral functions agree well with available experimental results.
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Affiliation(s)
- Himadri Pathak
- Advanced Computing, Mathematics, and Data Division, Pacific Northwest National Laboratory, Richland, Washington 99354, United States
| | - Ajay Panyala
- Advanced Computing, Mathematics, and Data Division, Pacific Northwest National Laboratory, Richland, Washington 99354, United States
| | - Bo Peng
- Physical Sciences Division, Pacific Northwest National Laboratory, Richland, Washington 99354, United States
| | - Nicholas P Bauman
- Physical Sciences Division, Pacific Northwest National Laboratory, Richland, Washington 99354, United States
| | - Erdal Mutlu
- Advanced Computing, Mathematics, and Data Division, Pacific Northwest National Laboratory, Richland, Washington 99354, United States
| | - John J Rehr
- Department of Physics, University of Washington, Seattle, Washington 98195, United States
| | - Fernando D Vila
- Department of Physics, University of Washington, Seattle, Washington 98195, United States
| | - Karol Kowalski
- Physical Sciences Division, Pacific Northwest National Laboratory, Richland, Washington 99354, United States
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17
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Motta M, Jones GO, Rice JE, Gujarati TP, Sakuma R, Liepuoniute I, Garcia JM, Ohnishi YY. Quantum chemistry simulation of ground- and excited-state properties of the sulfonium cation on a superconducting quantum processor. Chem Sci 2023; 14:2915-2927. [PMID: 36937596 PMCID: PMC10016331 DOI: 10.1039/d2sc06019a] [Citation(s) in RCA: 9] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/31/2022] [Accepted: 02/14/2023] [Indexed: 02/17/2023] Open
Abstract
The computational description of correlated electronic structure, and particularly of excited states of many-electron systems, is an anticipated application for quantum devices. An important ramification is to determine the dominant molecular fragmentation pathways in photo-dissociation experiments of light-sensitive compounds, like sulfonium-based photo-acid generators used in photolithography. Here we simulate the static and dynamical electronic structure of the H3S+ molecule, taken as a minimal model of a triply-bonded sulfur cation, on a superconducting quantum processor of the IBM Falcon architecture. To this end, we generalize a qubit reduction technique termed entanglement forging or EF [A. Eddins et al., Phys. Rev. X Quantum, 2022, 3, 010309], currently restricted to the evaluation of ground-state energies, to the treatment of molecular properties. While in a conventional quantum simulation a qubit represents a spin-orbital, within EF a qubit represents a spatial orbital, reducing the number of required qubits by half. We combine the generalized EF with quantum subspace expansion [W. Colless et al., Phys. Rev. X, 2018, 8, 011021], a technique used to project the time-independent Schrodinger equation for ground- and excited-states in a subspace. To enable experimental demonstration of this algorithmic workflow, we deploy a sequence of error-mitigation techniques. We compute dipole structure factors and partial atomic charges along ground- and excited-state potential energy curves, revealing the occurrence of homo- and heterolytic fragmentation. This study is an important step towards the computational description of photo-dissociation on near-term quantum devices, as it can be generalized to other photodissociation processes and naturally extended in different ways to achieve more realistic simulations.
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Affiliation(s)
- Mario Motta
- IBM Quantum, IBM Research - Almaden 650 Harry Road San Jose 95120 CA USA
| | - Gavin O Jones
- IBM Quantum, IBM Research - Almaden 650 Harry Road San Jose 95120 CA USA
| | - Julia E Rice
- IBM Quantum, IBM Research - Almaden 650 Harry Road San Jose 95120 CA USA
| | - Tanvi P Gujarati
- IBM Quantum, IBM Research - Almaden 650 Harry Road San Jose 95120 CA USA
| | - Rei Sakuma
- Materials Informatics Initiative, RD Technology & Digital Transformation Center, JSR Corporation 3-103-9, Tonomachi, Kawasaki-ku Kawasaki 210-0821 Kanagawa Japan
| | - Ieva Liepuoniute
- IBM Quantum, IBM Research - Almaden 650 Harry Road San Jose 95120 CA USA
| | - Jeannette M Garcia
- IBM Quantum, IBM Research - Almaden 650 Harry Road San Jose 95120 CA USA
| | - Yu-Ya Ohnishi
- Materials Informatics Initiative, RD Technology & Digital Transformation Center, JSR Corporation 3-103-9, Tonomachi, Kawasaki-ku Kawasaki 210-0821 Kanagawa Japan
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18
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Atkin AM, Giansiracusa MJ, Calvello S, Rousset E, Gable RW, Phonsri W, Murray KS, Howard JK, Soncini A, Mole RA, Boskovic C. Inelastic Neutron Scattering Measurement of the Ground State Tunneling Gap in Tb and Ho Analogues of a Dy Field-Induced Single-Molecule Magnet. Inorg Chem 2023; 62:1141-1155. [PMID: 36630675 DOI: 10.1021/acs.inorgchem.2c03457] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/13/2023]
Abstract
Recent advances in single-molecule magnet (SMM) research have placed great value on interpretation of inelastic neutron scattering (INS) data for rare earth (RE)-containing SMMs. Here, we present the synthesis of several rare earth complexes where combined magnetic and INS studies have been performed, supported by ab initio calculations. The reaction of rare earth nitrate salts with 2,2'-bipyridine (2,2'-bpy) and tetrahalocatecholate (X4Cat2-, X = Br, Cl) ligands in methanol (MeOH) afforded two new families of compounds [RE(2,2'-bpy)2(X4Cat)(X4CatH)(MeOH)] (X = Br and RE = Y, Eu, Gd, Tb, Dy, Ho, Yb for 1-RE; X = Cl and RE = Y, Tb, Dy, Ho, and Yb for 2-RE). Addition of triethylamine (Et3N) to the reaction mixture delivered Et3NH[RE(2,2'-bpy)2(Br4Cat)2] (3-RE, RE = Er and Yb). Interestingly, cerium behaves differently to the rest of the series, generating (2,2'-bpyH)2[Ce(Br4Cat)3(2,2'-bpy)] (4-Ce) with tetravalent Ce(IV) in contrast to the trivalent metal ions in 1-3. The static magnetic properties of 1-RE (RE = Gd, Tb, Dy and Ho) were investigated in conjunction with INS measurements on 1-Y, 1-Tb, and 1-Ho to probe their ground state properties and any crystal field excitations. To facilitate interpretation of the INS spectra and provide insight into the magnetic behavior, ab initio calculations were performed using the single-crystal X-ray diffraction structural data of 1-RE (RE = Tb, Dy and Ho). The ab initio calculations indicate ground doublets dominated by the maximal angular momentum projection states of Kramers type for 1-Dy and Ising type for 1-Tb and 1-Ho. Dynamic magnetic susceptibility measurements indicate that 1-Dy exhibits slow magnetic relaxation in the presence of a small applied magnetic field mainly through Raman pathways. Inelastic neutron scattering spectra exhibit distinct transitions corresponding to crystal field-induced tunneling gaps between the pseudo-doublet ground state components for 1-Tb and 1-Ho, which is one of the first direct experimental measurements with INS of such tunneling transitions in a molecular nanomagnet. The power of high-resolution INS is demonstrated with evidence of two distinct tunneling gaps measurable for the two crystallographically unique Tb coordination environments observed in the single crystal X-ray structure.
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Affiliation(s)
- Aiden M Atkin
- School of Chemistry, University of Melbourne, Parkville, Victoria3010, Australia
| | | | - Simone Calvello
- School of Chemistry, University of Melbourne, Parkville, Victoria3010, Australia.,Australian Nuclear Science and Technology Organisation, Locked Bag 2001, Kirrawee DC2232, Australia
| | - Elodie Rousset
- School of Chemistry, University of Melbourne, Parkville, Victoria3010, Australia
| | - Robert W Gable
- School of Chemistry, University of Melbourne, Parkville, Victoria3010, Australia
| | - Wasinee Phonsri
- School of Chemistry, Monash University, Clayton, Victoria3168, Australia
| | - Keith S Murray
- School of Chemistry, Monash University, Clayton, Victoria3168, Australia
| | - James K Howard
- Australian Nuclear Science and Technology Organisation, Locked Bag 2001, Kirrawee DC2232, Australia
| | - Alessandro Soncini
- School of Chemistry, University of Melbourne, Parkville, Victoria3010, Australia
| | - Richard A Mole
- Australian Nuclear Science and Technology Organisation, Locked Bag 2001, Kirrawee DC2232, Australia
| | - Colette Boskovic
- School of Chemistry, University of Melbourne, Parkville, Victoria3010, Australia
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19
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Liu J, Hu W, Yang J. Accelerating Linear-Response Time-Dependent Hybrid Density Functional Theory with Low-Rank Decomposition Techniques in the Plane-Wave Basis. J Chem Theory Comput 2022; 18:6713-6721. [PMID: 36242561 DOI: 10.1021/acs.jctc.2c00763] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
We present an efficient low-rank implementation of linear-response time-dependent density functional theory for hybrid functionals (hybrid-LR-TDDFT) within the plane-wave pseudopotential framework. The adaptively compressed exchange (ACE) operator and the natural transition orbitals (NTOs) are introduced to build the low-rank representation of the nonlocal exchange operator in the hybrid-LR-TDDFT Hamiltonian. Numerical tests demonstrate that the ACE approximation significantly reduces the computational cost of applying the nonlocal exchange operator without loss of accuracy, and the NTO approximation can further accelerate the hybrid-LR-TDDFT calculations by introducing an NTO cutoff parameter. This new method enables us to effectively study the excitonic properties of two-dimensional MoS2 consisting of 216 atoms and ∼1900 electrons with range-separated hybrid functionals on a single graphics processing unit.
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Affiliation(s)
- Jie Liu
- Hefei National Laboratory, University of Science and Technology of China, Hefei230088, China
| | - Wei Hu
- Hefei National Research Center for Physical Sciences at the Microscale, University of Science and Technology of China, Hefei, Anhui230026, China
| | - Jinlong Yang
- Hefei National Laboratory, University of Science and Technology of China, Hefei230088, China.,Hefei National Research Center for Physical Sciences at the Microscale, University of Science and Technology of China, Hefei, Anhui230026, China
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20
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Sauza-de la Vega A, Pandharkar R, Stroscio GD, Sarkar A, Truhlar DG, Gagliardi L. Multiconfiguration Pair-Density Functional Theory for Chromium(IV) Molecular Qubits. JACS AU 2022; 2:2029-2037. [PMID: 36186551 PMCID: PMC9516709 DOI: 10.1021/jacsau.2c00306] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/17/2022] [Revised: 08/19/2022] [Accepted: 08/19/2022] [Indexed: 05/30/2023]
Abstract
Pseudotetrahedral organometallic complexes containing chromium(IV) and aryl ligands have been experimentally identified as promising molecular qubit candidates. Here we present a computational protocol based on multiconfiguration pair-density functional theory for computing singlet-triplet gaps and zero-field splitting (ZFS) parameters in Cr(IV) aryl complexes. We find that two multireference methods, multistate complete active space second-order perturbation theory (MS-CASPT2) and hybrid multistate pair-density functional theory (HMS-PDFT), perform better than Kohn-Sham density functional theory for singlet-triplet gaps. Despite the very small values of the ZFS parameters, both multireference methods performed qualitatively well. MS-CASPT2 and HMS-PDFT performed particularly well for predicting the trend in the ratio of the rhombic and axial ZFS parameters, |E/D|. We have also investigated the dependence and sensitivity of the calculated ZFS parameters on the active space and the molecular geometry. The methodologies outlined here can guide future prediction of ZFS parameters in molecular qubit candidates.
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Affiliation(s)
- Arturo Sauza-de la Vega
- Department
of Chemistry, Pritzker School of Molecular Engineering, James Franck
Institute, Chicago Center for Theoretical Chemistry, University of Chicago, Chicago, Illinois 60637, United States
| | - Riddhish Pandharkar
- Department
of Chemistry, Pritzker School of Molecular Engineering, James Franck
Institute, Chicago Center for Theoretical Chemistry, University of Chicago, Chicago, Illinois 60637, United States
- Argonne
National Laboratory, Lemont, Illinois 60439, United States
| | - Gautam D. Stroscio
- Department
of Chemistry, Pritzker School of Molecular Engineering, James Franck
Institute, Chicago Center for Theoretical Chemistry, University of Chicago, Chicago, Illinois 60637, United States
| | - Arup Sarkar
- Department
of Chemistry, Pritzker School of Molecular Engineering, James Franck
Institute, Chicago Center for Theoretical Chemistry, University of Chicago, Chicago, Illinois 60637, United States
| | - Donald G. Truhlar
- Department
of Chemistry, Chemical Theory Center, and Minnesota Supercomputing
Institute, University of Minnesota, Minneapolis, Minnesota 55455−0431, United States
| | - Laura Gagliardi
- Department
of Chemistry, Pritzker School of Molecular Engineering, James Franck
Institute, Chicago Center for Theoretical Chemistry, University of Chicago, Chicago, Illinois 60637, United States
- Argonne
National Laboratory, Lemont, Illinois 60439, United States
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21
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Goh T, Pandharkar R, Gagliardi L. Multireference Study of Optically Addressable Vanadium-Based Molecular Qubit Candidates. J Phys Chem A 2022; 126:6329-6335. [PMID: 36040367 DOI: 10.1021/acs.jpca.2c04730] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
Molecular electron spin qubits with optical manipulation schemes are some of the most promising candidates for modern quantum technologies. Key values that determine a compound's viability for optical-spin initialization and readout include its singlet-triplet gap and zero-field splitting (ZFS) parameters. Generally, these values are very small in magnitude and are thus difficult to reproduce with theoretical methods. Here, we study a previously identified optically addressable molecular qubit, (C6F5)3trenVCNtBu (tren = tris(2-aminoethyl)amine), using the complete active space self-consistent field (CASSCF) and post-CASSCF methods: complete active space second-order perturbation theory (CASPT2), multiconfiguration pair-density functional theory (MC-PDFT), and hybrid MC-PDFT (HMC-PDFT). Of those methods, we successfully reproduce the singlet-triplet gap and ZFS parameters with reasonable accuracy using 0.5 HMC-PDFT and CASPT2. Four additional V3+ complexes with differing ligands were also investigated. We found that the ligands have minimal effect on the spin properties of the molecule and propose them to be optically addressable qubit candidates. These potential qubits are further analyzed in terms of ab initio ligand field theory (AILFT) to understand the influence of the ligands on the singlet-triplet gap and ZFS parameters.
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Affiliation(s)
- Teffanie Goh
- Department of Chemistry, Pritzker School of Molecular Engineering, The James Franck Institute and Chicago Center for Theoretical Chemistry, The University of Chicago, Chicago, Illinois 60637, United States
| | - Riddhish Pandharkar
- Department of Chemistry, Pritzker School of Molecular Engineering, The James Franck Institute and Chicago Center for Theoretical Chemistry, The University of Chicago, Chicago, Illinois 60637, United States.,Argonne National Laboratory, 9700 S. Cass Avenue, Lemont, Illinois 60439, United States
| | - Laura Gagliardi
- Department of Chemistry, Pritzker School of Molecular Engineering, The James Franck Institute and Chicago Center for Theoretical Chemistry, The University of Chicago, Chicago, Illinois 60637, United States.,Argonne National Laboratory, 9700 S. Cass Avenue, Lemont, Illinois 60439, United States
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22
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Schnack-Petersen AK, Koch H, Coriani S, Kjønstad EF. Efficient implementation of molecular CCSD gradients with Cholesky-decomposed electron repulsion integrals. J Chem Phys 2022; 156:244111. [DOI: 10.1063/5.0087261] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/04/2023] Open
Abstract
We present an efficient implementation of ground and excited state coupled cluster singles and doubles (CCSD) gradients based on Cholesky-decomposed electron repulsion integrals. Cholesky decomposition and density fitting are both inner projection methods, and, thus, similar implementation schemes can be applied for both methods. One well-known advantage of inner projection methods, which we exploit in our implementation, is that one can avoid storing large V3 O and V4 arrays by instead considering three-index intermediates. Furthermore, our implementation does not require the formation and storage of Cholesky vector derivatives. The new implementation is shown to perform well, with less than 10% of the time spent calculating the gradients in geometry optimizations. Furthermore, the computational time per optimization cycle is significantly lower compared to other implementations based on an inner projection method. We showcase the capabilities of the implementation by optimizing the geometry of the retinal molecule (C20H28O) at the CCSD/aug-cc-pVDZ level of theory.
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Affiliation(s)
| | - Henrik Koch
- Scuola Normale Superiore, Piazza dei Cavaleri 7, 56126 Pisa, Italy
- Department of Chemistry, Norwegian University of Science and Technology, 7491 Trondheim, Norway
| | - Sonia Coriani
- Department of Chemistry, Technical University of Denmark, 2800 Kongens Lyngby, Denmark
- Department of Chemistry, Norwegian University of Science and Technology, 7491 Trondheim, Norway
| | - Eirik F. Kjønstad
- Department of Chemistry, Norwegian University of Science and Technology, 7491 Trondheim, Norway
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23
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Motta M, Rice JE. Emerging quantum computing algorithms for quantum chemistry. WIRES COMPUTATIONAL MOLECULAR SCIENCE 2022. [DOI: 10.1002/wcms.1580] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/31/2022]
Affiliation(s)
- Mario Motta
- IBM Quantum, IBM Research‐Almaden San Jose California USA
| | - Julia E. Rice
- IBM Quantum, IBM Research‐Almaden San Jose California USA
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24
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Liu J, Fan Y, Li Z, Yang J. Quantum algorithms for electronic structures: basis sets and boundary conditions. Chem Soc Rev 2022; 51:3263-3279. [PMID: 35352716 DOI: 10.1039/d1cs01184g] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The advantages of quantum computers are believed to significantly change the research paradigm of chemical and materials sciences, where computational characterization and theoretical design play an increasingly important role. It is especially desirable to solve the electronic structure problem, a central problem in chemistry and materials science, efficiently and accurately with well-designed quantum algorithms. Various quantum electronic-structure algorithms have been proposed in the literature. In this article, we briefly review recent progress in this direction with a special emphasis on the basis sets and boundary conditions. Compared to classical electronic structure calculations, there are new considerations in choosing a basis set in quantum algorithms. For example, the effect of the basis set on the circuit complexity is very important in quantum algorithm design. Electronic structure calculations should be performed with an appropriate boundary condition. Simply using a wave function ansatz designed for molecular systems in a material system with a periodic boundary condition may lead to significant errors. Artificial boundary conditions can be used to partition a large system into smaller fragments to save quantum resources. The basis sets and boundary conditions are expected to play a crucial role in electronic structure calculations on future quantum computers, especially for realistic systems.
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Affiliation(s)
- Jie Liu
- Hefei National Laboratory for Physical Sciences at Microscale, University of Science and Technology of China, Hefei, Anhui 230026, China.
| | - Yi Fan
- Hefei National Laboratory for Physical Sciences at Microscale, University of Science and Technology of China, Hefei, Anhui 230026, China.
| | - Zhenyu Li
- Hefei National Laboratory for Physical Sciences at Microscale, University of Science and Technology of China, Hefei, Anhui 230026, China.
| | - Jinlong Yang
- Hefei National Laboratory for Physical Sciences at Microscale, University of Science and Technology of China, Hefei, Anhui 230026, China.
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25
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Ünal A, Bozkaya U. Efficient Implementation of Equation-of-Motion Coupled-Cluster Singles and Doubles Method with the Density-Fitting Approximation: An Enhanced Algorithm for the Particle-Particle Ladder Term. J Chem Theory Comput 2022; 18:1489-1500. [PMID: 35107297 PMCID: PMC8908769 DOI: 10.1021/acs.jctc.1c01000] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
Abstract
An efficient implementation of the density-fitted equation-of-motion coupled-cluster singles and doubles (DF-EOM-CCSD) method is presented with an enhanced algorithm for the particle-particle ladder (PPL) term, which is the most expensive part of EOM-CCSD computations. To further improve the evaluation of the PPL term, a hybrid density-fitting/Cholesky decomposition (DF/CD) algorithm is also introduced. In the hybrid DF/CD approach, four virtual index integrals are constructed on-the-fly from the DF factors; then, their partial Cholesky decomposition is simultaneously performed. The computational cost of the DF-EOM-CCSD method for excitation energies is compared with that of the resolution of the identity EOM-CCSD (RI-EOM-CCSD) (from the Q-chem 5.3 package). Our results demonstrate that DF-EOM-CCSD excitation energies are significantly accelerated compared to RI-EOM-CCSD. There is more than a 2-fold reduction for the C8H18 molecule in the cc-pVTZ basis set with the restricted Hartree-Fock (RHF) reference. This cost savings results from the efficient evaluation of the PPL term. In the RHF based DF-EOM-CCSD method, the number of flops (NOF) is 1/4O2V4, while that of RI-EOM-CCSD was reported (Epifanovsky et al. J. Chem. Phys. 2013, 139, 134105) to be 5/8O2V4 for the PPL contraction term. Further, the NOF of VVVV-type integral transformation is 1/2V4Naux in our case, while it appears to be V4Naux for RI-EOM-CCSD. Hence, our implementation is 2.5 and 2.0 times more efficient compared to RI-EOM-CCSD for these expensive terms. For the unrestricted Hartree-Fock (UHF) reference, our implementation maintains its enhanced performance and provides a 1.8-fold reduction in the computational time compared to RI-EOM-CCSD for the C7H16 molecule. Our results indicate that our DF-EOM-CCSD implementation is 1.7 and 1.4 times more efficient compared with RI-EOM-CCSD for average computational cost per EOM-CCSD iteration. Moreover, our results show that the new hybrid DF/CD approach improves upon the DF algorithm, especially for large molecular systems. Overall, we conclude that the new hybrid DF/CD PPL algorithm is very promising for large-sized chemical systems.
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Affiliation(s)
- Aslı Ünal
- Graduate School of Science and Engineering, Hacettepe University, Ankara 06800, Turkey.,Department of Chemistry, Hacettepe University, Ankara 06800, Turkey
| | - Uğur Bozkaya
- Department of Chemistry, Hacettepe University, Ankara 06800, Turkey
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26
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Deng D, Suo B, Zou W. New Light on an Old Story: Breaking Kasha's Rule in Phosphorescence Mechanism of Organic Boron Compounds and Molecule Design. Int J Mol Sci 2022; 23:876. [PMID: 35055059 PMCID: PMC8776103 DOI: 10.3390/ijms23020876] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/03/2021] [Revised: 01/09/2022] [Accepted: 01/11/2022] [Indexed: 12/10/2022] Open
Abstract
In this work, the phosphorescence mechanism of (E)-3-(((4-nitrophenyl)imino)methyl)-2H-thiochroman-4-olate-BF2 compound (S-BF2) is investigated theoretically. The phosphorescence of S-BF2 has been reassigned to the second triplet state (T2) by the density matrix renormalization group (DMRG) method combined with the multi-configurational pair density functional theory (MCPDFT) to approach the limit of theoretical accuracy. The calculated radiative and non-radiative rate constants support the breakdown of Kasha's rule further. Our conclusion contradicts previous reports that phosphorescence comes from the first triplet state (T1). Based on the revised phosphorescence mechanism, we have purposefully designed some novel compounds in theory to enhance the phosphorescence efficiency from T2 by replacing substitute groups in S-BF2. Overall, both S-BF2 and newly designed high-efficiency molecules exhibit anti-Kasha T2 phosphorescence instead of the conventional T1 emission. This work provides a useful guidance for future design of high-efficiency green-emitting phosphors.
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Affiliation(s)
- Dan Deng
- Institute of Modern Physics, Northwest University, Xi’an 710127, China;
- Shaanxi Key Laboratory for Theoretical Physics Frontiers, Xi’an 710127, China
| | - Bingbing Suo
- Institute of Modern Physics, Northwest University, Xi’an 710127, China;
- Shaanxi Key Laboratory for Theoretical Physics Frontiers, Xi’an 710127, China
| | - Wenli Zou
- Institute of Modern Physics, Northwest University, Xi’an 710127, China;
- Shaanxi Key Laboratory for Theoretical Physics Frontiers, Xi’an 710127, China
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27
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Lehtola S. Straightforward and Accurate Automatic Auxiliary Basis Set Generation for Molecular Calculations with Atomic Orbital Basis Sets. J Chem Theory Comput 2021; 17:6886-6900. [PMID: 34614349 DOI: 10.1021/acs.jctc.1c00607] [Citation(s) in RCA: 12] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Density fitting (DF), also known as the resolution of the identity (RI), is a widely used technique in quantum chemical calculations with various types of atomic basis sets─Gaussian-type orbitals, Slater-type orbitals, as well as numerical atomic orbitals─to speed up density functional, Hartree-Fock (HF), and post-HF calculations. Traditionally, custom auxiliary basis sets are hand-optimized for each orbital basis set; however, some automatic schemes have also been suggested. In this work, we propose a simple yet numerically stable automated scheme for forming auxiliary basis sets with the help of a pivoted Cholesky decomposition, which is applicable to any type of atomic basis function. We exemplify the scheme with proof-of-concept calculations with Gaussian basis sets and show that the proposed approach leads to negligible DF/RI errors in HF and second-order Møller-Plesset (MP2) total energies of the non-multireference part of the W4-17 test set when used with orbital basis sets of at least polarized triple-ζ quality. The results are promising for future applications employing Slater-type orbitals or numerical atomic orbitals, as well as schemes based on the use of local fitting approaches. Global fitting approaches can also be used, in which case the high-angular-momentum functions produced by the present scheme can be truncated to minimize the computational cost.
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Affiliation(s)
- Susi Lehtola
- Molecular Sciences Software Institute, Blacksburg, Virginia 24061, United States
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28
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Segarra‐Martí J, Bearpark MJ. Modelling Photoionisation in Isocytosine: Potential Formation of Longer-Lived Excited State Cations in its Keto Form. Chemphyschem 2021; 22:2172-2181. [PMID: 34370368 PMCID: PMC8597144 DOI: 10.1002/cphc.202100402] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/25/2021] [Revised: 08/09/2021] [Indexed: 11/24/2022]
Abstract
Studying the effects of UV and VUV radiation on non-canonical DNA/RNA nucleobases allows us to compare how they release excess energy following absorption with respect to their canonical counterparts. This has attracted much research attention in recent years because of its likely influence on the origin of our genetic lexicon in prebiotic times. Here we present a CASSCF and XMS-CASPT2 theoretical study of the photoionisation of non-canonical pyrimidine nucleobase isocytosine in both its keto and enol tautomeric forms. We analyse their lowest energy cationic excited states including 2 π + , 2 n O + and 2 n N + and compare these to the corresponding electronic states in cytosine. Investigating lower-energy decay pathways we find - unexpectedly - that keto-isocytosine+ presents a sizeable energy barrier potentially inhibiting decay to its cationic ground state, whereas enol-isocytosine+ features a barrierless and consequently ultrafast pathway analogous to the one previously found for the canonical (keto) form of cytosine+ . Dynamic electron correlation reduces the energy barrier in the keto form substantially (by ∼1 eV) but it is nevertheless still present. We additionally compute the UV/Vis absorption signals of the structures encountered along these decay channels to provide spectroscopic fingerprints to assist future experiments in monitoring these intricate photo-processes.
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Affiliation(s)
- Javier Segarra‐Martí
- Department of ChemistryMolecular Sciences Research HubImperial College LondonWhite City Campus, 82 Wood LaneLondonW12 0BZUK
- Present address: Instituto de Ciencia MolecularUniversitat de ValenciaP.O. Box 22085ES-46071ValenciaSpain
| | - Michael J. Bearpark
- Department of ChemistryMolecular Sciences Research HubImperial College LondonWhite City Campus, 82 Wood LaneLondonW12 0BZUK
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29
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Hsieh M, Huang G, Yu JK. Dipole‐bound states and substituent effects of Breslow intermediates in the enolate form. J CHIN CHEM SOC-TAIP 2021. [DOI: 10.1002/jccs.202100310] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/07/2023]
Affiliation(s)
- Ming‐Hsiu Hsieh
- Institute of Bioinformatics and Systems Biology National Yang Ming Chiao Tung University Hsinchu Taiwan
| | - Gou‐Tao Huang
- Department of Biological Science and Technology National Yang Ming Chiao Tung University Hsinchu Taiwan
| | - Jen‐Shiang K. Yu
- Institute of Bioinformatics and Systems Biology, Department of Biological Science and Technology, and Institute of Molecular Medicine and Bioengineering National Yang Ming Chiao Tung University Hsinchu Taiwan
- Center for Intelligent Drug Systems and Smart Bio‐Devices National Yang Ming Chiao Tung University Hsinchu Taiwan
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30
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Galley SS, Pattenaude SA, Ray D, Gaggioli CA, Whitefoot MA, Qiao Y, Higgins RF, Nelson WL, Baumbach R, Sperling JM, Zeller M, Collins TS, Schelter EJ, Gagliardi L, Albrecht-Schönzart TE, Bart SC. Using Redox-Active Ligands to Generate Actinide Ligand Radical Species. Inorg Chem 2021; 60:15242-15252. [PMID: 34569783 DOI: 10.1021/acs.inorgchem.1c01766] [Citation(s) in RCA: 19] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2022]
Abstract
Using a redox-active dioxophenoxazine ligand, DOPO (DOPO = 2,4,6,8-tetra-tert-butyl-1-oxo-1H-phenoxazine-9-olate), a family of actinide (U, Th, Np, and Pu) and Hf tris(ligand) coordination compounds was synthesized. The full characterization of these species using 1H NMR spectroscopy, electronic absorption spectroscopy, SQUID magnetometry, and X-ray crystallography showed that these compounds are analogous and exist in the form M(DOPOq)2(DOPOsq), where two ligands are of the oxidized quinone form (DOPOq) and the third is of the reduced semiquinone (DOPOsq) form. The electronic structures of these complexes were further investigated using CASSCF calculations, which revealed electronic structures consistent with metals in the +4 formal oxidation state and one unpaired electron localized on one ligand in each complex. Furthermore, f orbitals of the early actinides show a sizable bonding overlap with the ligand 2p orbitals. Notably, this is the first example of a plutonium-ligand radical species and a rare example of magnetic data being recorded for a homogeneous plutonium coordination complex.
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Affiliation(s)
- Shane S Galley
- H. C. Brown Laboratory, Department of Chemistry, Purdue University, West Lafayette, Indiana 47907, United States
| | - Scott A Pattenaude
- H. C. Brown Laboratory, Department of Chemistry, Purdue University, West Lafayette, Indiana 47907, United States
| | - Debmalya Ray
- Department of Chemistry, Supercomputing Institute, and Chemical Theory Centre, University of Minnesota, Minneapolis, Minnesota 55455, United States
| | - Carlo Alberto Gaggioli
- Department of Chemistry, Pritzker School of Molecular Engineering, James Franck Institute, and Chicago Center for Theoretical Chemistry, The University of Chicago, 5735 South Ellis Avenue, Chicago, Illinois 60637, United States
| | - Megan A Whitefoot
- H. C. Brown Laboratory, Department of Chemistry, Purdue University, West Lafayette, Indiana 47907, United States
| | - Yusen Qiao
- P. Roy and Diana T. Vagelos Laboratories, Department of Chemistry, University of Pennsylvania, Philadelphia, Pennsylvania 19104, United States
| | - Robert F Higgins
- P. Roy and Diana T. Vagelos Laboratories, Department of Chemistry, University of Pennsylvania, Philadelphia, Pennsylvania 19104, United States
| | - W L Nelson
- National High Magnetic Field Laboratory, Florida State University, Tallahassee, Florida 32310, United States.,Department of Physics, Florida State University, Tallahassee, Florida 32306, United States
| | - Ryan Baumbach
- National High Magnetic Field Laboratory, Florida State University, Tallahassee, Florida 32310, United States.,Department of Physics, Florida State University, Tallahassee, Florida 32306, United States
| | - Joseph M Sperling
- Department of Chemistry and Biochemistry, Florida State University, Tallahassee, Florida 32306, United States
| | - Matthias Zeller
- H. C. Brown Laboratory, Department of Chemistry, Purdue University, West Lafayette, Indiana 47907, United States
| | - Tyler S Collins
- H. C. Brown Laboratory, Department of Chemistry, Purdue University, West Lafayette, Indiana 47907, United States
| | - Eric J Schelter
- P. Roy and Diana T. Vagelos Laboratories, Department of Chemistry, University of Pennsylvania, Philadelphia, Pennsylvania 19104, United States
| | - Laura Gagliardi
- Department of Chemistry, Pritzker School of Molecular Engineering, James Franck Institute, and Chicago Center for Theoretical Chemistry, The University of Chicago, 5735 South Ellis Avenue, Chicago, Illinois 60637, United States
| | - Thomas E Albrecht-Schönzart
- Department of Chemistry and Biochemistry, Florida State University, Tallahassee, Florida 32306, United States
| | - Suzanne C Bart
- H. C. Brown Laboratory, Department of Chemistry, Purdue University, West Lafayette, Indiana 47907, United States
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31
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Li X, Panetier JA. Computational Study for CO 2-to-CO Conversion over Proton Reduction Using [Re[bpyMe(Im-R)](CO) 3Cl] + (R = Me, Me 2, and Me 4) Electrocatalysts and Comparison with Manganese Analogues. ACS Catal 2021. [DOI: 10.1021/acscatal.1c02899] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022]
Affiliation(s)
- Xiaohui Li
- Department of Chemistry, State University of New York at Binghamton, Binghamton, New York 13902, United States
| | - Julien A. Panetier
- Department of Chemistry, State University of New York at Binghamton, Binghamton, New York 13902, United States
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32
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Prajapati B, Dang D, Chmielewski PJ, Majewski MA, Lis T, Gómez‐García CJ, Zimmerman PM, Stępień M. An Open‐Shell Coronoid with Hybrid Chichibabin–Schlenk Conjugation. Angew Chem Int Ed Engl 2021. [DOI: 10.1002/ange.202109273] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
Affiliation(s)
- Bibek Prajapati
- Wydział Chemii Uniwersytet Wrocławski ul. F. Joliot-Curie 14 50-383 Wrocław Poland
| | - Duy‐Khoi Dang
- Department of Chemistry University of Michigan 930 N. University Ave Ann Arbor MI 48109 USA
| | - Piotr J. Chmielewski
- Wydział Chemii Uniwersytet Wrocławski ul. F. Joliot-Curie 14 50-383 Wrocław Poland
| | - Marcin A. Majewski
- Wydział Chemii Uniwersytet Wrocławski ul. F. Joliot-Curie 14 50-383 Wrocław Poland
| | - Tadeusz Lis
- Wydział Chemii Uniwersytet Wrocławski ul. F. Joliot-Curie 14 50-383 Wrocław Poland
| | - Carlos J. Gómez‐García
- Departamento de Química Inorgánica and Instituto de Ciencia Molecular Universidad de Valencia 46980 Paterna Spain
| | - Paul M. Zimmerman
- Department of Chemistry University of Michigan 930 N. University Ave Ann Arbor MI 48109 USA
| | - Marcin Stępień
- Wydział Chemii Uniwersytet Wrocławski ul. F. Joliot-Curie 14 50-383 Wrocław Poland
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33
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Li Manni G. Modeling magnetic interactions in high-valent trinuclear [Mn 3(IV)O 4] 4+ complexes through highly compressed multi-configurational wave functions. Phys Chem Chem Phys 2021; 23:19766-19780. [PMID: 34525156 DOI: 10.1039/d1cp03259c] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
In this work we apply a quantum chemical framework, recently designed in our laboratories, to rationalize the low-energy electronic spectrum and the magnetic properties of an homo-valent trinuclear [Mn3(IV)O4]4+ model of the oxygen-evolving center in photosystem II. The method is based on chemically motivated molecular orbital unitary transformations, and the optimization of spin-adapted many-body wave functions, both for ground- and excited-states, in the transformed MO basis. In this basis, the configuration interaction Hamiltonian matrix of exchange-coupled multi-center clusters is extremely sparse and characterized by a unique block diagonal structure. This property leads to highly compressed wave functions (oligo- or single-reference) and crucially enables state-specific optimizations. This work is the first showing that compression and selective targeting of ground- and excited-states wave functions is possible for systems with three magnetic centers that are not exactly half-filled, and that potentially exhibit frustrated spin interactions. The reduced multi-reference character of the wave function greatly simplifies the interpretation of the ground- and excited-state electronic structures, and provides a route for the direct rationalization of magnetic interactions in these compounds, often considered a challenge in polynuclear transition-metal chemistry. In this study, strong electron correlation effects have explicitly been described by conventional and stochastic multiconfigurational methodologies, while dynamic correlation effects have been accounted for by multiconfigurational second order perturbation theory, CASPT2. Ab initio results for the [Mn3(IV)O4]4+ system have been mapped to a three-site Heisenberg model with two magnetic coupling constants. The magnetic coupling constants and the temperature dependence of the effective magnetic moment predicted by the ab initio calculations are in good agreement with the available experimental data, and confirm the antiferromagnetic interaction among the three magnetic centers, while providing a simple and rigorous description of the noncollinearity of the local spins, that characterize most of the low-energy states for this system.
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Affiliation(s)
- Giovanni Li Manni
- Department of Electronic Structure Theory, Max Planck Institute for Solid State Research, Heisenbergstraße 1, 70569 Stuttgart, Germany.
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34
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Helmich-Paris B, de Souza B, Neese F, Izsák R. An improved chain of spheres for exchange algorithm. J Chem Phys 2021; 155:104109. [PMID: 34525816 DOI: 10.1063/5.0058766] [Citation(s) in RCA: 125] [Impact Index Per Article: 31.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/16/2022] Open
Abstract
In the present work, we describe a more accurate and efficient variant of the chain-of-spheres algorithm (COSX) for exchange matrix computations. Higher accuracy for the numerical integration is obtained with new grids that were developed using global optimization techniques. With our new default grids, the average absolute energy errors are much lower than 0.1 kcal/mol, which is desirable to achieve "chemical accuracy." Although the size of the new grids is increased by roughly a factor of 2.5, the excellent efficiency of the original COSX implementation is still further improved in most cases. The evaluation of the analytic electrostatic potential integrals was significantly accelerated by a new implementation of rolled-out versions of the Dupuis-Rys-King and Head-Gordon-Pople algorithms. Compared to our earlier implementation, a twofold speedup is obtained for the frequently used triple-ζ basis sets, while up to a 16-fold speedup is observed for quadruple-ζ basis sets. These large gains are a consequence of both the more efficient integral evaluation and the intermediate exchange matrix computation in a partially contracted basis when generally contracted shells occur. With our new RIJCOSX implementation, we facilitate accurate self-consistent field (SCF) binding energy calculations on a large supra-molecular complex composed of 320 atoms. The binding-energy errors with respect to the fully analytic results are well below 0.1 kcal/mol for the cc-pV(T/Q)Z basis sets and even smaller than for RIJ with fully analytic exchange. At the same time, our RIJCOSX SCF calculation even with the cc-pVQZ basis and the finest grid is 21 times faster than the fully analytic calculation.
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Affiliation(s)
- Benjamin Helmich-Paris
- Max-Planck-Institut für Kohlenforschung, Kaiser-Wilhelm-Platz 1, 45470 Mülheim an der Ruhr, Germany
| | | | - Frank Neese
- Max-Planck-Institut für Kohlenforschung, Kaiser-Wilhelm-Platz 1, 45470 Mülheim an der Ruhr, Germany
| | - Róbert Izsák
- Max-Planck-Institut für Kohlenforschung, Kaiser-Wilhelm-Platz 1, 45470 Mülheim an der Ruhr, Germany
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35
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Nottoli T, Gauss J, Lipparini F. A black-box, general purpose quadratic self-consistent field code with and without Cholesky decomposition of the two-electron integrals. Mol Phys 2021. [DOI: 10.1080/00268976.2021.1974590] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]
Affiliation(s)
- Tommaso Nottoli
- Dipartimento di Chimica e Chimica Industriale, Università di Pisa, Pisa, Italy
| | - Jürgen Gauss
- Department Chemie, Johannes Gutenberg-Universität Mainz, Mainz, Germany
| | - Filippo Lipparini
- Dipartimento di Chimica e Chimica Industriale, Università di Pisa, Pisa, Italy
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36
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Brenner V, Véry T, Schmidt MW, Gordon MS, Hoyau S, Ben Amor N. Model protein excited states: MRCI calculations with large active spaces vs CC2 method. J Chem Phys 2021; 154:214105. [PMID: 34240962 DOI: 10.1063/5.0048146] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
Benchmarking calculations on excited states of models of phenylalanine protein chains are presented to assess the ability of alternative methods to the standard and most commonly used multiconfigurational wave function-based method, the complete active space self-consistent field (CASSCF), in recovering the non-dynamical correlation for systems that become not affordable by the CASSCF. The exploration of larger active spaces beyond the CASSCF limit is benchmarked through three strategies based on the reduction in the number of determinants: the restricted active space self-consistent field, the generalized active space self-consistent field (GASSCF), and the occupation-restricted multiple active space (ORMAS) schemes. The remaining dynamic correlation effects are then added by the complete active space second-order perturbation theory and by the multireference difference dedicated configuration interaction methods. In parallel, the approximate second-order coupled cluster (CC2), already proven to be successful for small building blocks of model proteins in one of our previous works [Ben Amor et al., J. Chem. Phys. 148, 184105 (2018)], is investigated to assess its performances for larger systems. Among the different alternative strategies to CASSCF, our results highlight the greatest efficiency of the GASSCF and ORMAS schemes in the systematic reduction of the configuration interaction expansion without loss of accuracy in both nature and excitation energies of both singlet ππ* and nπ* CO excited states with respect to the equivalent CASSCF calculations. Guidelines for an optimum applicability of this scheme to systems requiring active spaces beyond the complete active space limit are then proposed. Finally, the extension of the CC2 method to such large systems without loss of accuracy is demonstrated, highlighting the great potential of this method to treat accurately excited states, mainly single reference, of very large systems.
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Affiliation(s)
- Valérie Brenner
- LIDYL, CEA, CNRS, Université Paris-Saclay, 91191 Gif-sur-Yvette, France
| | - Thibaut Véry
- LIDYL, CEA, CNRS, Université Paris-Saclay, 91191 Gif-sur-Yvette, France
| | - Michael W Schmidt
- Department of Chemistry, Iowa State University, Ames, Iowa 5001, USA
| | - Mark S Gordon
- Department of Chemistry, Iowa State University, Ames, Iowa 5001, USA
| | - Sophie Hoyau
- Université de Toulouse, UPS, LCPQ (Laboratoire de Chimie et Physique Quantiques), IRSAMC, 118, rte de Narbonne, F-31062 Toulouse Cedex, France
| | - Nadia Ben Amor
- Université de Toulouse, UPS, LCPQ (Laboratoire de Chimie et Physique Quantiques), IRSAMC, 118, rte de Narbonne, F-31062 Toulouse Cedex, France
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37
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Stępień M, Prajapati B, Dang DK, Chmielewski PJ, Majewski MA, Lis T, Gómez-García CJ, Zimmerman PM. An Open-Shell Coronoid with Hybrid Chichibabin-Schlenk Conjugation. Angew Chem Int Ed Engl 2021; 60:22496-22504. [PMID: 34382721 DOI: 10.1002/anie.202109273] [Citation(s) in RCA: 13] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/12/2021] [Revised: 07/30/2021] [Indexed: 11/10/2022]
Abstract
A hexaradicaloid molecule with alternating Kekulé and non-Kekulé connectivities between adjacent spin centers was obtained by fusing two classic conjugation motifs, found respectively in the Chichibabin and Schlenk hydrocarbons, into a coronoid structure. 1 H NMR, ESR and SQUID experiments, combined with computational analyses reveal that the system has a singlet ground state, characterized by a significant hexaradicaloid character ( γ 0 = 0.826, γ 1 = γ 2 = 0.773). It possesses multiple thermally accessible high-spin states (up to the septet), with uniform energy gaps of ca 1.0 kcal/mol between consecutive multiplicities. In line with its open-shell character, the coronoid has a small electronic bandgap of ca. 0.8 eV and undergoes two consecutive one-electron oxidations at low potentials, yielding cationic forms with extended near-infrared absorption. The hexaradicaloid, which combines open-shell and macrocyclic contributions to its π conjugation, provides an example of a design strategy for multistate spin switches and redox-amphoteric NIR dyes.
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Affiliation(s)
- Marcin Stępień
- University of Wroclaw, Department of Chemistry, ul. F. Joliot-Curie 14, 50-383, Wroclaw, POLAND
| | | | - Duy-Khoi Dang
- University of Michigan Ann Arbor, Department of Chemistry, UNITED STATES
| | | | | | - Tadeusz Lis
- Uniwersytet Wrocławski, Wydział Chemii, POLAND
| | - Carlos J Gómez-García
- Universidad de Valencia, Departamento de Química Inorgánica and Instituto de Ciencia Molecular, SPAIN
| | - Paul M Zimmerman
- University of Michigan Ann Arbor, Department of Chemistry, UNITED STATES
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38
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Matthews DA. A critical analysis of least-squares tensor hypercontraction applied to MP3. J Chem Phys 2021; 154:134102. [PMID: 33832252 DOI: 10.1063/5.0038764] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
The least-squares tensor hypercontraction (LS-THC) approach is a promising method of reducing the high polynomial scaling of wavefunction methods, for example, those based on many-body perturbation theory or coupled cluster. Here, we focus on LS-THC-MP3 and identify four variants with differing errors and efficiency characteristics. The performance of LS-THC-MP3 is analyzed for regular test systems with up to 40 first-row atoms. We also analyze the size-extensivity/size-consistency and grid- and basis set dependence of LS-THC-MP3. Overall, the errors observed are favorably small in comparison with standard density fitting, and a more streamlined method of generating grids via pruning is suggested. A practical crossover (the point at which LS-THC-MP3 is cheaper than the canonical method) is achieved around 240 correlated electrons. Despite several drawbacks of LS-THC that have been identified: an initial non-linearity of error when increasing system size, poor description of angular correlation, and a potentially large increase in error with the basis set size, the results show that LS-THC has significant potential for practical application to MP3 and other wavefunction methods.
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Kowalski K, Bair R, Bauman NP, Boschen JS, Bylaska EJ, Daily J, de Jong WA, Dunning T, Govind N, Harrison RJ, Keçeli M, Keipert K, Krishnamoorthy S, Kumar S, Mutlu E, Palmer B, Panyala A, Peng B, Richard RM, Straatsma TP, Sushko P, Valeev EF, Valiev M, van Dam HJJ, Waldrop JM, Williams-Young DB, Yang C, Zalewski M, Windus TL. From NWChem to NWChemEx: Evolving with the Computational Chemistry Landscape. Chem Rev 2021; 121:4962-4998. [PMID: 33788546 DOI: 10.1021/acs.chemrev.0c00998] [Citation(s) in RCA: 23] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]
Abstract
Since the advent of the first computers, chemists have been at the forefront of using computers to understand and solve complex chemical problems. As the hardware and software have evolved, so have the theoretical and computational chemistry methods and algorithms. Parallel computers clearly changed the common computing paradigm in the late 1970s and 80s, and the field has again seen a paradigm shift with the advent of graphical processing units. This review explores the challenges and some of the solutions in transforming software from the terascale to the petascale and now to the upcoming exascale computers. While discussing the field in general, NWChem and its redesign, NWChemEx, will be highlighted as one of the early codesign projects to take advantage of massively parallel computers and emerging software standards to enable large scientific challenges to be tackled.
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Affiliation(s)
- Karol Kowalski
- Pacific Northwest National Laboratory, Richland, Washington 99352, United States
| | - Raymond Bair
- Argonne National Laboratory, Lemont, Illinois 60439, United States
| | - Nicholas P Bauman
- Pacific Northwest National Laboratory, Richland, Washington 99352, United States
| | | | - Eric J Bylaska
- Pacific Northwest National Laboratory, Richland, Washington 99352, United States
| | - Jeff Daily
- Pacific Northwest National Laboratory, Richland, Washington 99352, United States
| | - Wibe A de Jong
- Lawrence Berkeley National Laboratory, Berkeley, California 94720, United States
| | - Thom Dunning
- Pacific Northwest National Laboratory, Richland, Washington 99352, United States
| | - Niranjan Govind
- Pacific Northwest National Laboratory, Richland, Washington 99352, United States
| | - Robert J Harrison
- Institute for Advanced Computational Science, Stony Brook University, Stony Brook, New York 11794, United States
| | - Murat Keçeli
- Argonne National Laboratory, Lemont, Illinois 60439, United States
| | | | | | - Suraj Kumar
- Pacific Northwest National Laboratory, Richland, Washington 99352, United States
| | - Erdal Mutlu
- Pacific Northwest National Laboratory, Richland, Washington 99352, United States
| | - Bruce Palmer
- Pacific Northwest National Laboratory, Richland, Washington 99352, United States
| | - Ajay Panyala
- Pacific Northwest National Laboratory, Richland, Washington 99352, United States
| | - Bo Peng
- Pacific Northwest National Laboratory, Richland, Washington 99352, United States
| | | | - T P Straatsma
- National Center for Computational Sciences, Oak Ridge National Laboratory, Oak Ridge, Tennessee 37831-6373, United States
| | - Peter Sushko
- Pacific Northwest National Laboratory, Richland, Washington 99352, United States
| | - Edward F Valeev
- Department of Chemistry, Virginia Tech, Blacksburg, Virginia 24061, United States
| | - Marat Valiev
- Pacific Northwest National Laboratory, Richland, Washington 99352, United States
| | | | | | | | - Chao Yang
- Lawrence Berkeley National Laboratory, Berkeley, California 94720, United States
| | - Marcin Zalewski
- Pacific Northwest National Laboratory, Richland, Washington 99352, United States
| | - Theresa L Windus
- Department of Chemistry, Iowa State University and Ames Laboratory, Ames, Iowa 50011, United States
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40
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Okiyama Y, Nakano T, Watanabe C, Fukuzawa K, Komeiji Y, Segawa K, Mochizuki Y. Acceleration of Environmental Electrostatic Potential Using Cholesky Decomposition with Adaptive Metric (CDAM) for Fragment Molecular Orbital (FMO) Method. BULLETIN OF THE CHEMICAL SOCIETY OF JAPAN 2021. [DOI: 10.1246/bcsj.20200227] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
Affiliation(s)
- Yoshio Okiyama
- National Institute of Health Sciences, 3-25-26 Tonomachi, Kawasaki-ku, Kawasaki, Kanagawa 210-9501, Japan
| | - Tatsuya Nakano
- National Institute of Health Sciences, 3-25-26 Tonomachi, Kawasaki-ku, Kawasaki, Kanagawa 210-9501, Japan
| | - Chiduru Watanabe
- Institute of Industrial Science, The University of Tokyo, 4-6-1 Komaba, Meguro-ku, Tokyo 153-8505, Japan
| | - Kaori Fukuzawa
- Hoshi University, 2-4-41 Ebara, Shinagawa-ku, Tokyo 142-8501, Japan
| | - Yuto Komeiji
- National Institute of Advanced Industrial Science and Technology, AIST, Tsukuba Central 6, Tsukuba, Ibaraki 305-8566, Japan
| | - Katsunori Segawa
- National Institute of Health Sciences, 3-25-26 Tonomachi, Kawasaki-ku, Kawasaki, Kanagawa 210-9501, Japan
| | - Yuji Mochizuki
- Institute of Industrial Science, The University of Tokyo, 4-6-1 Komaba, Meguro-ku, Tokyo 153-8505, Japan
- Rikkyo University, 3-34-1 Nishi-ikebukuro, Toshima-ku, Tokyo 171-8501, Japan
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41
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Bozkaya U, Ünal A, Alagöz Y. Energy and analytic gradients for the orbital-optimized coupled-cluster doubles method with the density-fitting approximation: An efficient implementation. J Chem Phys 2020; 153:244115. [PMID: 33380091 DOI: 10.1063/5.0035811] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
Efficient implementations of the orbital-optimized coupled-cluster doubles (or simply "optimized CCD," OCCD, for short) method and its analytic energy gradients with the density-fitting (DF) approach, denoted by DF-OCCD, are presented. In addition to the DF approach, the Cholesky-decomposed variant (CD-OCCD) is also implemented for energy computations. The computational cost of the DF-OCCD method (available in a plugin version of the DFOCC module of PSI4) is compared with that of the conventional OCCD (from the Q-CHEM package). The OCCD computations were performed with the Q-CHEM package in which OCCD are denoted by OD. In the conventional OCCD method, one needs to perform four-index integral transformations at each of the CCD iterations, which limits its applications to large chemical systems. Our results demonstrate that DF-OCCD provides dramatically lower computational costs compared to OCCD, and there are almost eightfold reductions in the computational time for the C6H14 molecule with the cc-pVTZ basis set. For open-shell geometries, interaction energies, and hydrogen transfer reactions, DF-OCCD provides significant improvements upon DF-CCD. Furthermore, the performance of the DF-OCCD method is substantially better for harmonic vibrational frequencies in the case of symmetry-breaking problems. Moreover, several factors make DF-OCCD more attractive compared to CCSD: (1) for DF-OCCD, there is no need for orbital relaxation contributions in analytic gradient computations; (2) active spaces can readily be incorporated into DF-OCCD; (3) DF-OCCD provides accurate vibrational frequencies when symmetry-breaking problems are observed; (4) in its response function, DF-OCCD avoids artificial poles; hence, excited-state molecular properties can be computed via linear response theory; and (5) symmetric and asymmetric triples corrections based on DF-OCCD [DF-OCCD(T)] have a significantly better performance in near degeneracy regions.
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Affiliation(s)
- Uğur Bozkaya
- Department of Chemistry, Hacettepe University, Ankara 06800, Turkey
| | - Aslı Ünal
- Department of Chemistry, Hacettepe University, Ankara 06800, Turkey
| | - Yavuz Alagöz
- Department of Chemistry, Hacettepe University, Ankara 06800, Turkey
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42
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Head-Marsden K, Flick J, Ciccarino CJ, Narang P. Quantum Information and Algorithms for Correlated Quantum Matter. Chem Rev 2020; 121:3061-3120. [PMID: 33326218 DOI: 10.1021/acs.chemrev.0c00620] [Citation(s) in RCA: 40] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
Abstract
Discoveries in quantum materials, which are characterized by the strongly quantum-mechanical nature of electrons and atoms, have revealed exotic properties that arise from correlations. It is the promise of quantum materials for quantum information science superimposed with the potential of new computational quantum algorithms to discover new quantum materials that inspires this Review. We anticipate that quantum materials to be discovered and developed in the next years will transform the areas of quantum information processing including communication, storage, and computing. Simultaneously, efforts toward developing new quantum algorithmic approaches for quantum simulation and advanced calculation methods for many-body quantum systems enable major advances toward functional quantum materials and their deployment. The advent of quantum computing brings new possibilities for eliminating the exponential complexity that has stymied simulation of correlated quantum systems on high-performance classical computers. Here, we review new algorithms and computational approaches to predict and understand the behavior of correlated quantum matter. The strongly interdisciplinary nature of the topics covered necessitates a common language to integrate ideas from these fields. We aim to provide this common language while weaving together fields across electronic structure theory, quantum electrodynamics, algorithm design, and open quantum systems. Our Review is timely in presenting the state-of-the-art in the field toward algorithms with nonexponential complexity for correlated quantum matter with applications in grand-challenge problems. Looking to the future, at the intersection of quantum information science and algorithms for correlated quantum matter, we envision seminal advances in predicting many-body quantum states and describing excitonic quantum matter and large-scale entangled states, a better understanding of high-temperature superconductivity, and quantifying open quantum system dynamics.
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Affiliation(s)
- Kade Head-Marsden
- John A. Paulson School of Engineering and Applied Sciences, Harvard University, Cambridge, Massachusetts 02138, United States
| | - Johannes Flick
- Center for Computational Quantum Physics, Flatiron Institute, New York, New York 10010, United States
| | - Christopher J Ciccarino
- John A. Paulson School of Engineering and Applied Sciences, Harvard University, Cambridge, Massachusetts 02138, United States.,Department of Chemistry and Chemical Biology, Harvard University, Cambridge, Massachusetts 02138, United States
| | - Prineha Narang
- John A. Paulson School of Engineering and Applied Sciences, Harvard University, Cambridge, Massachusetts 02138, United States
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43
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Pedroza-Montero JN, Delesma FA, Morales JL, Calaminici P, Köster AM. Variational fitting of the Fock exchange potential with modified Cholesky decomposition. J Chem Phys 2020; 153:134112. [DOI: 10.1063/5.0020084] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2022] Open
Affiliation(s)
- Jesús Naín Pedroza-Montero
- Programa de Doctorado en Nanociencias y Nanotecnología, Cinvestav, Av. Instituto Politécnico Nacional, 2508, A.P. 14740, Ciudad de México 07000, Mexico
| | - Francisco Antonio Delesma
- Programa de Doctorado en Nanociencias y Nanotecnología, Cinvestav, Av. Instituto Politécnico Nacional, 2508, A.P. 14740, Ciudad de México 07000, Mexico
| | - José Luis Morales
- Departamento de Química, Cinvestav, Av. Instituto Politécnico Nacional, 2508, A.P. 14740, Ciudad de México 07000, Mexico
| | - Patrizia Calaminici
- Programa de Doctorado en Nanociencias y Nanotecnología, Cinvestav, Av. Instituto Politécnico Nacional, 2508, A.P. 14740, Ciudad de México 07000, Mexico
- Departamento de Química, Cinvestav, Av. Instituto Politécnico Nacional, 2508, A.P. 14740, Ciudad de México 07000, Mexico
| | - Andreas M. Köster
- Programa de Doctorado en Nanociencias y Nanotecnología, Cinvestav, Av. Instituto Politécnico Nacional, 2508, A.P. 14740, Ciudad de México 07000, Mexico
- Departamento de Química, Cinvestav, Av. Instituto Politécnico Nacional, 2508, A.P. 14740, Ciudad de México 07000, Mexico
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44
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Prat JR, Gaggioli CA, Cammarota RC, Bill E, Gagliardi L, Lu CC. Bioinspired Nickel Complexes Supported by an Iron Metalloligand. Inorg Chem 2020; 59:14251-14262. [PMID: 32954721 DOI: 10.1021/acs.inorgchem.0c02041] [Citation(s) in RCA: 24] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
Nature utilizes multimetallic sites in metalloenzymes to enable multielectron chemical transformations at ambient conditions and low overpotentials. One such example of multimetallic cooperativity can be found in the C-cluster of Ni-carbon monoxide dehydrogenase (CODH), which interconverts CO and CO2. Toward a potential functional model of the C-cluster, a family of Ni-Fe bimetallic complexes was synthesized that contain direct metal-metal bonding interactions. The complexes were characterized by X-ray crystallography, various spectroscopies (NMR, EPR, UV-vis, Mössbauer), and theoretical calculations. The Ni-Fe bimetallic system has a reversible Fe(III)/Fe(II) redox couple at -2.10 V (vs Fc+/Fc). The Fe-based "redox switch" can turn on CO2 reactivity at the Ni(0) center by leveraging the Ni→Fe dative interaction to attenuate the Ni(0) electron density. The reduced Ni(0)Fe(II) species mediated the formal two-electron reduction of CO2 to CO, providing a Ni-CO adduct and CO32- as products. During the reaction, an intermediate was observed that is proposed to be a Ni-CO2 species.
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Affiliation(s)
| | | | | | - Eckhard Bill
- Max-Planck-Institut für Chemische Energiekonversion, Stiftstraße 34-36, 45470 Mülheim an der Ruhr, Germany
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45
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Sharma P, Truhlar DG, Gagliardi L. Magnetic Coupling in a Tris-hydroxo-Bridged Chromium Dimer Occurs through Ligand Mediated Superexchange in Conjunction with Through-Space Coupling. J Am Chem Soc 2020; 142:16644-16650. [DOI: 10.1021/jacs.0c06399] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/23/2023]
Affiliation(s)
- Prachi Sharma
- Department of Chemistry, Chemical Theory Center, and Minnesota Supercomputing Institute, University of Minnesota, 207 Pleasant Street SE, Minneapolis, Minnesota 55455-0431, United States
| | - Donald G. Truhlar
- Department of Chemistry, Chemical Theory Center, and Minnesota Supercomputing Institute, University of Minnesota, 207 Pleasant Street SE, Minneapolis, Minnesota 55455-0431, United States
| | - Laura Gagliardi
- Department of Chemistry, Chemical Theory Center, and Minnesota Supercomputing Institute, University of Minnesota, 207 Pleasant Street SE, Minneapolis, Minnesota 55455-0431, United States
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46
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Servan SA, Ünal A, Hamarat B, Bozkaya U. Assessment of the Density-Fitted Second-Order Quasidegenerate Perturbation Theory for Transition Energies: Accurate Computations of Singlet-Triplet Gaps for Charge-Transfer Compounds. J Phys Chem A 2020; 124:6889-6898. [PMID: 32786988 DOI: 10.1021/acs.jpca.0c04555] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
Organic light-emitting diodes (OLEDs) have been of significant interest because of their superior performance and low cost of production. Thermally activated delayed fluorescence (TADF) has attracted significant interest in the OLED technology because it improves the efficiency of OLEDs by harvesting triplet excitons. Therefore, the accurate computation of singlet-triplet transition energies (ΔES1-T1) of charge-transfer molecules is very important. However, the accurate computation of the ΔES1-T1 values is a challenging problem for single-reference methods because of the multireference character of excited states. In this research, an assessment of density-fitted second-order quasidegenerate perturbation theory (DF-QDPT2) [Bozkaya, U.; J. Chem. Theory Comput. 2019, 15, 4415-4429] for singlet-triplet transition energies (ΔES1-T1) of charge-transfer compounds is presented. The performance of the DF-QDPT2 method has been compared with those of several density-functional theory functionals, such as B3LYP, PBE0, M06-2X, ωB97X-D, and MN15; density-fitted state-averaged CASSCF (DF-SA-CASSCF); and single-state single-reference second-order perturbation theory (SS-SR-CASPT2) methods. For the TADF molecules considered, the DF-QDPT2 method provides a mean absolute error (MAE) of 0.13 eV, while the MAE values of DF-SA-CASSCF and SS-SR-CASPT2 are 0.65 and 0.74 eV, respectively. The performances of B3LYP and PBE0 are slightly better than that of DF-QDPT2, while M06-2X and ωB97X-D provide noticeably higher errors compared with DF-QDPT2. Furthermore, the standard CASSCF without state-averaging yields dramatic errors with an MAE value of 3.0 eV. Our results demonstrate that eigenvalues of the DF-QDPT2-effective Hamiltonian can be reliably used for the prediction of singlet-triplet transition energies, while eigenvalues of DF-CASSCF/DF-SA-CASSCF fail to provide accurate predictions. Overall, we conclude that the DF-QDPT2 method emerges as a very useful tool for the computation of excited-state properties.
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Affiliation(s)
| | - Aslı Ünal
- Department of Chemistry, Hacettepe University, Ankara 06800, Turkey
| | - Büşra Hamarat
- Department of Chemistry, Hacettepe University, Ankara 06800, Turkey
| | - Uğur Bozkaya
- Department of Chemistry, Hacettepe University, Ankara 06800, Turkey
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47
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Sherrill CD, Manolopoulos DE, Martínez TJ, Michaelides A. Electronic structure software. J Chem Phys 2020; 153:070401. [DOI: 10.1063/5.0023185] [Citation(s) in RCA: 20] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022] Open
Affiliation(s)
- C. David Sherrill
- Center for Computational Molecular Science and Technology, School of Chemistry and Biochemistry, and School of Computational Science and Engineering, Georgia Institute of Technology, Atlanta, Georgia
30332-0400, USA
| | - David E. Manolopoulos
- Physical and Theoretical Chemistry Laboratory, Department of Chemistry, Oxford University, South Parks Road, Oxford OX1
3QZ, United Kingdom
| | - Todd J. Martínez
- Department of Chemistry and the PULSE Institute, Stanford University, Stanford, California 94305,
USA
| | - Angelos Michaelides
- Thomas Young Centre, London Centre for Nanotechnology and Department of Physics and Astronomy, University College London, Gower Street, London WC1E 6BT, United Kingdom
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48
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Shirai S, Inagaki S. Ab initio study on the excited states of pyrene and its derivatives using multi-reference perturbation theory methods. RSC Adv 2020; 10:12988-12998. [PMID: 35492109 PMCID: PMC9051409 DOI: 10.1039/c9ra10483f] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/13/2019] [Accepted: 03/23/2020] [Indexed: 01/22/2023] Open
Abstract
Low-lying singlet excited states of pyrene derivatives originated from the 1La and 1Lb states of pyrene have decisive influences on their absorption and fluorescence emission behaviors. Calculation of these excited states with quantitative accuracy is required for the theoretical design of pyrene derivatives tailored to target applications; this has been a long-standing challenge for ab initio quantum chemical calculations. In this study, we explore an adequate computational scheme through calculations of pyrene and its phenyl-substituted derivatives using multi-reference perturbation theory (MRPT) methods. All valence π orbitals on the pyrene moiety were assigned to the active orbitals. Computational load was reduced by restricting the electron excitations within the active orbitals in the preparation of reference configuration space. A generalized multi-configuration quasi-degenerate perturbation theory (GMCQDPT) was adopted to treat the reference space other than the complete active space. The calculated 1La and 1Lb excitation energies of pyrene are in good agreement with the experimental values. Calculations of 1,3,6,8-tetraphenyl pyrene suggest that the energetic ordering of 1La and 1Lb is inverted through tetraphenyl substitution and its lowest singlet excited state is the 1La parentage of pyrene, which is consistent with the experimentally deduced scheme. These results are not readily obtained by MRPT calculations with a limited number of active orbitals and single-reference theory calculations. Diphenyl pyrenes (DPPy) were also calculated at the same level of theory to investigate the dependence on the substitution positions of phenyl groups.
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Affiliation(s)
- Soichi Shirai
- Toyota Central R&D Laboratories, Inc. Nagakute Aichi 480-1192 Japan
| | - Shinji Inagaki
- Toyota Central R&D Laboratories, Inc. Nagakute Aichi 480-1192 Japan
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49
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List NH, Dempwolff AL, Dreuw A, Norman P, Martínez TJ. Probing competing relaxation pathways in malonaldehyde with transient X-ray absorption spectroscopy. Chem Sci 2020; 11:4180-4193. [PMID: 34122881 PMCID: PMC8152795 DOI: 10.1039/d0sc00840k] [Citation(s) in RCA: 22] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022] Open
Abstract
Excited-state intramolecular hydrogen transfer (ESIHT) is a fundamental reaction relevant to chemistry and biology. Malonaldehyde is the simplest example of ESIHT, yet only little is known experimentally about its excited-state dynamics. Several competing relaxation pathways have been proposed, including internal conversion mediated by ESIHT and C[double bond, length as m-dash]C torsional motion as well as intersystem crossing. We perform an in silico transient X-ray absorption spectroscopy (TRXAS) experiment at the oxygen K-edge to investigate its potential to monitor the proposed ultrafast decay pathways in malonaldehyde upon photoexcitation to its bright S2(ππ*) state. We employ both restricted active space perturbation theory and algebraic-diagrammatic construction for the polarization propagator along interpolated reaction coordinates as well as representative trajectories from ab initio multiple spawning simulations to compute the TRXAS signals from the lowest valence states. Our study suggests that oxygen K-edge TRXAS can distinctly fingerprint the passage through the H-transfer intersection and the concomitant population transfer to the S1(nπ*) state. Potential intersystem crossing to T1(ππ*) is detectable from reappearance of the double pre-edge signature and reversed intensities. Moreover, the torsional deactivation pathway induces transient charge redistribution from the enol side towards the central C-atom and manifests itself as substantial shifts of the pre-edge features. Given the continuous advances in X-ray light sources, our study proposes an experimental route to disentangle ultrafast excited-state decay channels in this prototypical ESIHT system and provides a pathway-specific mapping of the TRXAS signal to facilitate the interpretation of future experiments.
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Affiliation(s)
- Nanna H List
- Department of Chemistry, The PULSE Institute, Stanford University Stanford CA 94305 USA .,SLAC National Accelerator Laboratory 2575 Sand Hill Road Menlo Park CA 94025 USA
| | - Adrian L Dempwolff
- Interdisciplinary Center for Scientific Computing, Heidelberg University Im Neuenheimer Feld 205 D-69120 Heidelberg Germany
| | - Andreas Dreuw
- Interdisciplinary Center for Scientific Computing, Heidelberg University Im Neuenheimer Feld 205 D-69120 Heidelberg Germany
| | - Patrick Norman
- School of Engineering Sciences in Chemistry, Biotechnology and Health (CBH), Department of Theoretical Chemistry and Biology, KTH Royal Institute of Technology Sweden
| | - Todd J Martínez
- Department of Chemistry, The PULSE Institute, Stanford University Stanford CA 94305 USA .,SLAC National Accelerator Laboratory 2575 Sand Hill Road Menlo Park CA 94025 USA
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50
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Lew-Yee JFH, Flores-Moreno R, Morales JL, M Del Campo J. Asymmetric Density Fitting with Modified Cholesky Decomposition Applied to Second-Order Electron Propagator. J Chem Theory Comput 2020; 16:1597-1605. [PMID: 31967819 DOI: 10.1021/acs.jctc.9b01215] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
Computation of molecular orbital electron repulsion integrals (MO-ERIs) as a transformation from atomic orbital ERIs (AO-ERIs) is the bottleneck of second-order electron propagator calculations when a single orbital is studied. In this contribution, asymmetric density fitting is combined with modified Cholesky decomposition to generate efficiently the required MO-ERIs. The key point of the presented algorithms is to keep track of integrals through partial contractions performed on three-center AO-ERIs; these contractions are stored in RAM instead of the AO-ERIs. Two implementations are provided, an in-core, which reduces the arithmetic and memory scaling factors as compared to the four-center AO-ERIs contraction method, and a semidirect, which overcomes memory limitations by evaluating antisymmetrized MO-ERIs in batches. On the numerical side, the proposed approach is fast and stable. The bad effects due to ill conditioning, namely, several negative and close to zero eigenvalues due to machine round off errors of the matrix associated with the density fitting process, are effectively controlled by means of a modified Cholesky factorization that avoids the matrix inversion needed to perform the asymmetrical density fitting implementation. The numerical experience presented shows that the in-core implementation is highly competitive to perform calculations on medium and large basis sets, while the semidirect implementation has small variations in time by changes in the available memory. The general applicability is illustrated on a set of selected relatively large-size molecules.
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Affiliation(s)
- Juan Felipe Huan Lew-Yee
- Departamento de Fı́sica y Quı́mica Teórica, Facultad de Quı́mica, Universidad Nacional Autónoma de México, Mexico City 04510, Mexico
| | - Roberto Flores-Moreno
- Departamento de Quı́mica, Universidad de Guadalajara, Blvd. Marcelino García Barragán 1421, Guadalajara Jalisco 44430, Mexico
| | - José Luis Morales
- Facultad de Quı́mica, Universidad Nacional Autónoma de México, Mexico City 04510, Mexico
| | - Jorge M Del Campo
- Departamento de Fı́sica y Quı́mica Teórica, Facultad de Quı́mica, Universidad Nacional Autónoma de México, Mexico City 04510, Mexico
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