1
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Ashrafi E, Sauvageau D, Elliott JW. Effects of different cryopreservation parameters on the differences between trypan blue and fluorescent SYTO 13/GelRed assays. Cryobiology 2024:104883. [PMID: 38452848 DOI: 10.1016/j.cryobiol.2024.104883] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/23/2023] [Revised: 01/30/2024] [Accepted: 03/05/2024] [Indexed: 03/09/2024]
Abstract
Post-thaw cell viability assessment is very important in cryopreservation because it is the main assessment method used to optimize the cryopreservation protocols for each cell type; hence, having standardized accurate, quick, and reliable assays for post-thaw cell viability measurements is of utmost importance. The trypan blue exclusion assay and nucleic-acid-binding fluorescence-based assays are two different methods for cell viability assessment. Both assays identify cells with damaged membranes by whether they let a compound enter the cell. In this study, these two assays are compared in the context of cryopreservation and the impacts of important cryopreservation parameters on the differences in measurements are investigated. H9c2 myoblasts were cryopreserved with different freezing protocols. Cell membrane integrities were measured immediately after thaw as well as after cryoprotectant removal by a hemocytometer-based trypan blue dye exclusion assay and a dual fluorometric SYTO 13/GelRed assay; and the results were compared. This study quantifies how i) the absence or presence of different cryoprotectants, ii) different cell-cryoprotectant incubation conditions, and iii) the presence or removal of cryoprotectants after thaw affect the differences between these two viability assays.
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Affiliation(s)
- Elham Ashrafi
- Department of Chemical and Materials Engineering, University of Alberta, Edmonton, AB, Canada
| | - Dominic Sauvageau
- Department of Chemical and Materials Engineering, University of Alberta, Edmonton, AB, Canada
| | - JanetA W Elliott
- Department of Chemical and Materials Engineering, University of Alberta, Edmonton, AB, Canada; Department of Laboratory Medicine and Pathology, University of Alberta, Edmonton, AB, Canada.
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2
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Dong Y, Kampf N, Schilt Y, Cao W, Raviv U, Klein J. Dehydration does not affect lipid-based hydration lubrication. NANOSCALE 2022; 14:18241-18252. [PMID: 36468753 PMCID: PMC9753160 DOI: 10.1039/d2nr04799c] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 09/01/2022] [Accepted: 11/22/2022] [Indexed: 06/17/2023]
Abstract
Phosphatidylcholine (PC) lipid bilayers at surfaces massively reduce sliding friction, via the hydration lubrication mechanism acting at their highly-hydrated phosphocholine headgroups, a central paradigm of biological lubrication, particularly at articular cartilage surfaces where low friction is crucial for joint well-being. Nanotribological measurements probed the effect on such lubrication of dehydration by dimethyl sulfoxide (DMSO), known to strongly dehydrate the phosphocholine headgroups of such PC bilayers, i.e. reduce the thickness of the inter-bilayer water layer, and thus expected to substantially degrade the hydration lubrication. Remarkably, and unexpectedly, we found that the dehydration has little effect on the friction. We used several approaches, including atomic force microscopy, small- and wide-angle X-ray scattering and all-atom molecular dynamics simulations to elucidate this. Our results show that while DMSO clearly removes hydration water from the lipid head-groups, this is offset by both higher areal head-group density and by rigidity-enhancement of the lipid bilayers, both of which act to reduce frictional dissipation. This sheds strong light on the robustness of lipid-based hydration lubrication in biological systems, despite the ubiquitous presence of bio-osmolytes which compete for hydration water.
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Affiliation(s)
- Yihui Dong
- Department of Molecular Chemistry and Materials Science, Weizmann Institute of Science, Rehovot, 76100, Israel.
| | - Nir Kampf
- Department of Molecular Chemistry and Materials Science, Weizmann Institute of Science, Rehovot, 76100, Israel.
| | - Yaelle Schilt
- Institute of Chemistry, The Hebrew University of Jerusalem, Jerusalem 9190401, Israel
| | - Wei Cao
- Department of Physical Chemistry, School of Chemistry, Tel Aviv University, Tel Aviv, 6997801, Israel
| | - Uri Raviv
- Institute of Chemistry, The Hebrew University of Jerusalem, Jerusalem 9190401, Israel
| | - Jacob Klein
- Department of Molecular Chemistry and Materials Science, Weizmann Institute of Science, Rehovot, 76100, Israel.
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3
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Boafo GF, Magar KT, Ekpo MD, Qian W, Tan S, Chen C. The Role of Cryoprotective Agents in Liposome Stabilization and Preservation. Int J Mol Sci 2022; 23:ijms232012487. [PMID: 36293340 PMCID: PMC9603853 DOI: 10.3390/ijms232012487] [Citation(s) in RCA: 7] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/25/2022] [Revised: 09/22/2022] [Accepted: 10/15/2022] [Indexed: 11/18/2022] Open
Abstract
To improve liposomes’ usage as drug delivery vehicles, cryoprotectants can be utilized to prevent constituent leakage and liposome instability. Cryoprotective agents (CPAs) or cryoprotectants can protect liposomes from the mechanical stress of ice by vitrifying at a specific temperature, which forms a glassy matrix. The majority of studies on cryoprotectants demonstrate that as the concentration of the cryoprotectant is increased, the liposomal stability improves, resulting in decreased aggregation. The effectiveness of CPAs in maintaining liposome stability in the aqueous state essentially depends on a complex interaction between protectants and bilayer composition. Furthermore, different types of CPAs have distinct effective mechanisms of action; therefore, the combination of several cryoprotectants may be beneficial and novel attributed to the synergistic actions of the CPAs. In this review, we discuss the use of liposomes as drug delivery vehicles, phospholipid–CPA interactions, their thermotropic behavior during freezing, types of CPA and their mechanism for preventing leakage of drugs from liposomes.
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Affiliation(s)
- George Frimpong Boafo
- Xiangya School of Pharmaceutical Sciences, Central South University, Changsha 410013, China
| | - Kosheli Thapa Magar
- Department of Pharmaceutics, School of Pharmacy, China Pharmaceutical University, Nanjing 211198, China
| | - Marlene Davis Ekpo
- Xiangya School of Pharmaceutical Sciences, Central South University, Changsha 410013, China
| | - Wang Qian
- Xiangya School of Pharmaceutical Sciences, Central South University, Changsha 410013, China
| | - Songwen Tan
- Xiangya School of Pharmaceutical Sciences, Central South University, Changsha 410013, China
- Correspondence: (S.T.); (C.C.)
| | - Chuanpin Chen
- Xiangya School of Pharmaceutical Sciences, Central South University, Changsha 410013, China
- Correspondence: (S.T.); (C.C.)
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4
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Yoshikawa K. Quantitative evaluation of DNA double-strand breaks (DSBs) through single-molecule observation. Enzymes 2022; 51:7-27. [PMID: 36336410 DOI: 10.1016/bs.enz.2022.08.002] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/16/2023]
Abstract
By adapting the method of single molecular observation for individual DNAs, it will be shown that reliable analysis of double-strand breaks, DSBs, becomes possible for various kinds of damage sources. Single DNA above the size of several-tens kilo base-pairs exhibits the length scale above several μm, indicating that their whole conformation is visible with fluorescence microscopy by adding suitable fluoresce dye to the solution. Various examples of the quantitative evaluation on DSBs are described, together with the evaluation of the protective effects of anti-oxidants.
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Affiliation(s)
- Kenichi Yoshikawa
- Faculty of Life and Medical Sciences, Doshisha University, Kyoto, Japan; Center for Integrative Medicine and Physics, Institute for Advanced Study, Kyoto University, Kyoto, Japan.
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5
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Sawicki R, Widelski J, Okińczyc P, Truszkiewicz W, Glous J, Sieniawska E. Exposure to Nepalese Propolis Alters the Metabolic State of Mycobacterium tuberculosis. Front Microbiol 2022; 13:929476. [PMID: 35814697 PMCID: PMC9260414 DOI: 10.3389/fmicb.2022.929476] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/26/2022] [Accepted: 05/23/2022] [Indexed: 11/21/2022] Open
Abstract
Propolis is a natural product proved to be efficient against Mycobacterium tuberculosis. Although it is produced by bees, its active alcoholic-aqueous fraction contains plant-derived molecules. To gain some insight into its mechanism of antimycobacterial activity, we studied the metabolic changes in bacterial cells treated with extract of Trigona sp. propolis from Nepal. The detailed metabolomic and transcriptomic analysis performed in this study indicated target points in bacterial cells under propolis extract influence. The profile of lipids forming the outer and middle layer of the mycobacterial cell envelope was not changed by propolis treatment, however, fluctuations in the profiles of amphipathic glycerophospholipids were observed. The enrichment analysis revealed bacterial metabolic pathways affected by Trigona sp. propolis treatment. The early metabolic response involved much more pathways than observed after 48 h of incubation, however, the highest enrichment ratio was observed after 48 h, indicating the long-lasting influence of propolis. The early bacterial response was related to the increased demand for energy and upregulation of molecules involved in the formation of the cell membrane. The transcriptomic analysis confirmed that bacteria also suffered from oxidative stress, which was more pronounced on the second day of exposure. This was the first attempt to explain the action of Nepalese propolis extract against mycobacteria.
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Affiliation(s)
- Rafał Sawicki
- Chair and Department of Biochemistry and Biotechnology, Medical University of Lublin, Lublin, Poland
| | - Jarosław Widelski
- Department of Pharmacognosy, Medical University of Lublin, Lublin, Poland
| | - Piotr Okińczyc
- Department of Pharmacognosy and Herbal Medicines, Wroclaw Medical University, Wrocław, Poland
| | - Wiesław Truszkiewicz
- Chair and Department of Biochemistry and Biotechnology, Medical University of Lublin, Lublin, Poland
| | - Joanna Glous
- Chair and Department of Biochemistry and Biotechnology, Medical University of Lublin, Lublin, Poland
| | - Elwira Sieniawska
- Department of Natural Products Chemistry, Medical University of Lublin, Lublin, Poland
- *Correspondence: Elwira Sieniawska
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6
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Malajczuk CJ, Stachura SS, Hendry JO, Mancera RL. Redefining the Molecular Interplay between Dimethyl Sulfoxide, Lipid Bilayers, and Dehydration. J Phys Chem B 2022; 126:2513-2529. [PMID: 35344357 DOI: 10.1021/acs.jpcb.2c00353] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2022]
Abstract
The potentially damaging action of dimethyl sulfoxide (DMSO) on phospholipid bilayers remains a matter of controversy. We have conducted a series of long-scale molecular dynamics simulations of 1,2-dioleoyl-sn-glycero-3-phosphocholine (DOPC) bilayers at various levels of hydration in the presence of variable quantities of DMSO. These simulations provide evidence for a non-destructive dehydrating mechanism of action for DMSO on DOPC bilayers across a wide concentration range and levels of hydration. Specifically, under full- and low-hydration conditions, the bilayer underwent a minor lateral contraction, coinciding with surface dehydration in the presence of dilute DMSO solutions (XDMSO < 0.3). At higher DMSO concentrations, this bilayer structure was retained despite a progressive deterioration of the hydration structure at the interface. A similar convergence of bilayer structural properties was observed under dehydration conditions for 0.3 < XDMSO < 0.7. Destabilization occurred for dehydrated bilayers in the presence of XDMSO ≥ 0.7, suggesting the existence of a DMSO concentration and/or dehydration threshold. However, such DMSO concentrations far exceed those established as toxic to other cellular components. Our findings represent a computational model for DMSO-DOPC interactions that is consistent with a range of experimental characterizations, offering new molecular insights into the cryoprotective mechanisms of action of DMSO.
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Affiliation(s)
- Chris J Malajczuk
- Curtin Medical School, Curtin Health Innovation Research Institute and Curtin Institute for Computation, Curtin University, GPO Box U1987, Perth, Western Australia 6845, Australia
| | - Sławomir S Stachura
- Curtin Medical School, Curtin Health Innovation Research Institute and Curtin Institute for Computation, Curtin University, GPO Box U1987, Perth, Western Australia 6845, Australia
| | - James O Hendry
- Curtin Medical School, Curtin Health Innovation Research Institute and Curtin Institute for Computation, Curtin University, GPO Box U1987, Perth, Western Australia 6845, Australia
| | - Ricardo L Mancera
- Curtin Medical School, Curtin Health Innovation Research Institute and Curtin Institute for Computation, Curtin University, GPO Box U1987, Perth, Western Australia 6845, Australia
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7
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Xiao Y, Ghosh R, Frederick KK. In-Cell NMR of Intact Mammalian Cells Preserved with the Cryoprotectants DMSO and Glycerol Have Similar DNP Performance. Front Mol Biosci 2022; 8:789478. [PMID: 35145995 PMCID: PMC8824258 DOI: 10.3389/fmolb.2021.789478] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/05/2021] [Accepted: 12/31/2021] [Indexed: 11/26/2022] Open
Abstract
NMR has the resolution and specificity to determine atomic-level protein structures of isotopically-labeled proteins in complex environments and, with the sensitivity gains conferred by dynamic nuclear polarization (DNP), NMR has the sensitivity to detect proteins at their endogenous concentrations. Prior work established that DNP MAS NMR is compatible with cellular viability. However, in that work, 15% glycerol, rather than the more commonly used 10% DMSO, was used as the cellular cryoprotectant. Moreover, incubation of cells cryoprotected 15% glycerol with the polarization agent, AMUPol, resulted in an inhomogeneous distribution of AMUPol through the cellular biomass, which resulted in a spatial bias of the NMR peak intensities. Because 10% DMSO is not only the most used cryoprotectant for mammalian cells, but also because DMSO is often used to improve delivery of molecules to cells, we sought to characterize the DNP performance of cells that were incubated with AMUPol and cryoprotected with 10% DMSO. We found that, like cells preserved with 15% glycerol, cells preserved with 10% DMSO retain high viability during DNP MAS NMR experiments if they are frozen at a controlled rate. However, DMSO did not improve the dispersion of AMUPol throughout the cellular biomass. Cells preserved with 15% glycerol and with 10% DMSO had similar DNP performance for both the maximal DNP enhancements as well as the inhomogeneous dispersion of AMUPol throughout the cellular biomass. Therefore, 10% DMSO and 15% glycerol are both appropriate cryoprotectant systems for DNP-assisted MAS NMR of intact viable mammalian cells.
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Affiliation(s)
- Yiling Xiao
- Department of Biophysics, UT Southwestern Medical Center, Dallas, TX, United States
| | - Rupam Ghosh
- Department of Biophysics, UT Southwestern Medical Center, Dallas, TX, United States
| | - Kendra K. Frederick
- Department of Biophysics, UT Southwestern Medical Center, Dallas, TX, United States
- Center for Alzheimer’s and Neurodegenerative Disease, UT Southwestern Medical Center, Dallas, TX, United States
- *Correspondence: Kendra K. Frederick,
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8
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Overall SA, Barnes AB. Biomolecular Perturbations in In-Cell Dynamic Nuclear Polarization Experiments. Front Mol Biosci 2021; 8:743829. [PMID: 34751246 PMCID: PMC8572051 DOI: 10.3389/fmolb.2021.743829] [Citation(s) in RCA: 9] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/19/2021] [Accepted: 10/06/2021] [Indexed: 11/13/2022] Open
Abstract
In-cell DNP is a growing application of NMR to the study of biomolecular structure and function within intact cells. An important unresolved question for in-cell DNP spectroscopy is the integrity of cellular samples under the cryogenic conditions of DNP. Despite the rich literature around cryopreservation of cells in the fields of stem cell/embryonic cell therapeutics, cell line preservation and in cryo-EM applications, the effect of cryopreservation procedures on DNP parameters is unclear. In this report we investigate cell survival and apoptosis in the presence of cryopreserving agents and DNP radicals. We also assess the effects of these reagents on cellular enhancements. We show that the DNP radical AMUPol has no effect on membrane permeability and does not induce apoptosis. Furthermore, the standard aqueous glass forming reagent, comprised of 60/30/10 d8-glycerol/D2O/H2O (DNP juice), rapidly dehydrates cells and induces apoptosis prior to freezing, reducing structural integrity of the sample prior to DNP analysis. Preservation with d6-DMSO at 10% v/v provided similar DNP enhancements per √unit time compared to glycerol preservation with superior maintenance of cell size and membrane integrity prior to freezing. DMSO preservation also greatly enhanced post-thaw survival of cells slow-frozen at 1°C/min. We therefore demonstrate that in-cell DNP-NMR studies should be done with d6-DMSO as cryoprotectant and raise important considerations for the progression of in-cell DNP-NMR towards the goal of high quality structural studies.
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Affiliation(s)
- Sarah A Overall
- Laboratory of Physical Chemistry, ETH Zürich, Zürich, Switzerland
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9
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Naßwetter LC, Fischer M, Scheidt HA, Heerklotz H. Membrane-water partitioning - Tackling the challenges of poorly soluble drugs using chaotropic co-solvents. Biophys Chem 2021; 277:106654. [PMID: 34265547 DOI: 10.1016/j.bpc.2021.106654] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/10/2021] [Revised: 06/22/2021] [Accepted: 06/24/2021] [Indexed: 12/01/2022]
Abstract
Many newly developed drugs suffer from poor water solubility and low bioavailability and hence, need special formulation vehicles like vesicular or micellar drug delivery systems. The knowledge of their membrane-water partition coefficient K becomes critical as is governs drug loading and release from the vehicle, as well as absorption into the body. The dilemma is that measuring K is particularly challenging for these very compounds. Here we establish a strategy to resolve this problem. We added DMSO to shift K and solubility into a convenient range and extrapolated these results back to zero-DMSO. Isothermal titration calorimetry revealed that logK of the kinase inhibitor Lapatinib decreased proportionally to DMSO content (2.5 - 20v%) with a slope of -1/20v% (m value = 28 kJ/mol). This implies a K of 84 mM-1 in DMSO-free buffer. This strategy should be transferable to other poorly soluble drugs and further detection methods.
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Affiliation(s)
- Leonie C Naßwetter
- Institute of Pharmaceutical Sciences, Albert-Ludwigs-Universität, Hermann-Herder-Straße 9, 79104 Freiburg, Germany.
| | - Markus Fischer
- Institute for Medical Physics and Biophysics, Leipzig University, Härtelstr. 16-18, 04107 Leipzig, Germany.
| | - Holger A Scheidt
- Institute for Medical Physics and Biophysics, Leipzig University, Härtelstr. 16-18, 04107 Leipzig, Germany.
| | - Heiko Heerklotz
- Institute of Pharmaceutical Sciences, Albert-Ludwigs-Universität, Hermann-Herder-Straße 9, 79104 Freiburg, Germany; Signalling Research Centres BIOSS and CIBSS, Albert-Ludwigs-Universität, Schänzlestraße 18, 79104 Freiburg; Leslie Dan Faculty of Pharmacy, University of Toronto, 144 College St, Toronto ON, M5S 3M2, Canada.
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10
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Hayeck N, Zoghzoghi C, Karam E, Salman R, Karaoghlanian N, Shihadeh A, Eissenberg T, Zein El Dine S, Saliba NA. Carrier Solvents of Electronic Nicotine Delivery Systems Alter Pulmonary Surfactant. Chem Res Toxicol 2021; 34:1572-1577. [PMID: 33945261 PMCID: PMC8220501 DOI: 10.1021/acs.chemrestox.0c00528] [Citation(s) in RCA: 9] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/01/2022]
Abstract
![]()
In late 2019, hundreds
of users of electronic products that aerosolize
a liquid for inhalation were hospitalized with a variety of respiratory
and gastrointestinal symptoms. While some investigations have attributed
the disease to the presence of vitamin E acetate in liquids that also
contained tetrahydrocannabinol, some evidence suggests that chronic
inhalation of two common solvents used in electronic nicotine delivery
systems (ENDS), propylene glycol (PG) and vegetable glycerin (VG),
can interfere with the lipid components of pulmonary surfactant and
cause or exacerbate pulmonary injury. The interaction between PG,
VG, and lung surfactant is not yet understood. This study presents
an examination of the molecular interactions of PG and VG with lung
surfactant mimicked by 1,2-dipalmitoyl-sn-glycero-3-phosphocholine
(DPPC). The interaction of DPPC and PG-VG is studied by attenuated
total reflectance fourier transform infrared spectroscopy. The results
showed that PG and VG altered the molecular alignment of the DPPC
surfactant. The orientation of the surfactant at the surface of the
lung affects the surface tension at the air–water interface,
thereby influencing breathing. These findings suggest that chronic
aerosolization of the primary solvents in ENDS might alter the function
of pulmonary surfactant.
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Affiliation(s)
- Nathalie Hayeck
- Chemistry Department, Faculty of Arts and Sciences, American University of Beirut, Beirut 1107-2020, Lebanon.,Center for the Study of Tobacco Products, Department of Psychology, Virginia Commonwealth University, Richmond, Virginia 23284, United States
| | - Carl Zoghzoghi
- Chemistry Department, Faculty of Arts and Sciences, American University of Beirut, Beirut 1107-2020, Lebanon
| | - Ebrahim Karam
- Center for the Study of Tobacco Products, Department of Psychology, Virginia Commonwealth University, Richmond, Virginia 23284, United States.,Mechanical Engineering Department, Maroun Semaan Faculty of Engineering and Architecture, American University of Beirut, 1107-2020 Beirut, Lebanon
| | - Rola Salman
- Center for the Study of Tobacco Products, Department of Psychology, Virginia Commonwealth University, Richmond, Virginia 23284, United States.,Mechanical Engineering Department, Maroun Semaan Faculty of Engineering and Architecture, American University of Beirut, 1107-2020 Beirut, Lebanon
| | - Nareg Karaoghlanian
- Center for the Study of Tobacco Products, Department of Psychology, Virginia Commonwealth University, Richmond, Virginia 23284, United States.,Mechanical Engineering Department, Maroun Semaan Faculty of Engineering and Architecture, American University of Beirut, 1107-2020 Beirut, Lebanon
| | - Alan Shihadeh
- Center for the Study of Tobacco Products, Department of Psychology, Virginia Commonwealth University, Richmond, Virginia 23284, United States.,Mechanical Engineering Department, Maroun Semaan Faculty of Engineering and Architecture, American University of Beirut, 1107-2020 Beirut, Lebanon
| | - Thomas Eissenberg
- Center for the Study of Tobacco Products, Department of Psychology, Virginia Commonwealth University, Richmond, Virginia 23284, United States.,Department of Psychology, Virginia Commonwealth University, Richmond, Virginia 23284, United States
| | - Salah Zein El Dine
- Department of Internal Medicine, Faculty of Medicine, American University of Beirut, 1107-2020 Beirut, Lebanon
| | - Najat A Saliba
- Chemistry Department, Faculty of Arts and Sciences, American University of Beirut, Beirut 1107-2020, Lebanon.,Center for the Study of Tobacco Products, Department of Psychology, Virginia Commonwealth University, Richmond, Virginia 23284, United States
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11
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Ohata K, Ezoe K, Miki T, Kouraba S, Fujiwara N, Yabuuchi A, Kobayashi T, Kato K. Effects of fatty acid supplementation during vitrification and warming on the developmental competence of mouse, bovine and human oocytes and embryos. Reprod Biomed Online 2021; 43:14-25. [PMID: 34049810 DOI: 10.1016/j.rbmo.2021.03.022] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/20/2020] [Revised: 03/25/2021] [Accepted: 03/31/2021] [Indexed: 02/05/2023]
Abstract
RESEARCH QUESTION Does fatty acid supplementation in vitrification and warming media influence developmental competence in oocytes after vitrification and warming? DESIGN Mouse oocytes and four-cell embryos were vitrified and warmed with solutions supplemented with fatty acid and cultured to the blastocyst stage. To study lipid metabolism after vitrification, quantitative real-time polymerase chain reaction was used to analyse the expression of genes related to beta oxidation in mouse embryos vitrified and warmed with or without fatty acids. The effects of fatty acid supplementation in the warming solutions on the developmental competence of bovine and human embryos were analysed. Blastocyst outgrowth assay was used to evaluate the potential of human blastocysts for adhesion to fibronectin. RESULTS The neutral lipid content of mouse oocytes in the fatty acid 1% supplementation group was significantly higher than in the fatty acid 0% group (P = 0.0032). The developmental rate to the blastocyst stage was significantly higher in the fatty acid 1% group than in the fatty acid 0% group in mice (P = 0.0345). Fatty acid supplementation in warming solution upregulated Acaa2 and Hadha in mouse embryos. Fatty acids significantly improved the developmental ability of bovine embryos to the blastocyst stage (P = 0.0048). Warming with 1% fatty acid supplementation significantly increased the proportion of human blastocysts with morphological grade A inner cell mass (P = 0.0074) and trophectoderm (P = 0.0323). CONCLUSIONS Fatty acid supplementation in the warming solutions improved the developmental competence of vitrified-warmed mouse oocytes by activating the beta-oxidation pathway. Fatty acid supplementation enhanced the developmental rate of bovine embryos to the blastocyst stage and improved morphological characteristics of human embryos vitrified at the cleavage stage.
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Affiliation(s)
- Kazuki Ohata
- Kato Ladies Clinic, 7-20-3 Nishishinjuku, Tokyo Shinjuku-ku 160-0023, Japan
| | - Kenji Ezoe
- Kato Ladies Clinic, 7-20-3 Nishishinjuku, Tokyo Shinjuku-ku 160-0023, Japan.
| | - Tetsuya Miki
- Kato Ladies Clinic, 7-20-3 Nishishinjuku, Tokyo Shinjuku-ku 160-0023, Japan
| | - Shizu Kouraba
- Towako Medical Research Center, 2-5-2 Asahidai, Ishikawa Nomi-shi 923-1211, Japan
| | - Nanoha Fujiwara
- Kato Ladies Clinic, 7-20-3 Nishishinjuku, Tokyo Shinjuku-ku 160-0023, Japan
| | - Akiko Yabuuchi
- Kato Ladies Clinic, 7-20-3 Nishishinjuku, Tokyo Shinjuku-ku 160-0023, Japan
| | - Tamotsu Kobayashi
- Kato Ladies Clinic, 7-20-3 Nishishinjuku, Tokyo Shinjuku-ku 160-0023, Japan
| | - Keiichi Kato
- Kato Ladies Clinic, 7-20-3 Nishishinjuku, Tokyo Shinjuku-ku 160-0023, Japan.
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12
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Huang J, Guo J, Zhou L, Zheng G, Cao J, Li Z, Zhou Z, Lei Q, Brinker CJ, Zhu W. Advanced Nanomaterials-Assisted Cell Cryopreservation: A Mini Review. ACS APPLIED BIO MATERIALS 2021; 4:2996-3014. [PMID: 35014388 DOI: 10.1021/acsabm.1c00105] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
Abstract
Cell cryopreservation is of vital significance both for transporting and storing cells before experimental/clinical use. Cryoprotectants (CPAs) are necessary additives in the preserving medium in cryopreservation, preventing cells from freeze-thaw injuries. Traditional organic solvents have been widely used in cell cryopreservation for decades. Given the obvious damage to cells due to their undesirable cytotoxicity and the burdensome post-thaw washing cycles before use, traditional CPAs are more and more likely to be replaced by modern ones with lower toxicity, less processing, and higher efficiency. As materials science thrives, nanomaterials are emerging to serve as potent vehicles for delivering nontoxic CPAs or inherent CPAs comparable to or even superior to conventional ones. This review will introduce some advanced nanomaterials (e.g., organic/inorganic nanoCPAs, nanodelivery systems) utilized for cell cryopreservation, providing broader insights into this developing field.
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Affiliation(s)
- Junda Huang
- MOE International Joint Research Laboratory on Synthetic Biology and Medicines, School of Biology and Biological Engineering, South China University of Technology, Guangzhou 510006, P. R. China
| | - Jimin Guo
- Center for Micro-Engineered Materials, Department of Chemical and Biological Engineering, The University of New Mexico, Albuquerque, New Mexico 87131, United States.,Department of Internal Medicine, Molecular Medicine, The University of New Mexico, Albuquerque, New Mexico 87131, United States
| | - Liang Zhou
- MOE International Joint Research Laboratory on Synthetic Biology and Medicines, School of Biology and Biological Engineering, South China University of Technology, Guangzhou 510006, P. R. China
| | - Guansheng Zheng
- MOE International Joint Research Laboratory on Synthetic Biology and Medicines, School of Biology and Biological Engineering, South China University of Technology, Guangzhou 510006, P. R. China
| | - Jiangfan Cao
- MOE International Joint Research Laboratory on Synthetic Biology and Medicines, School of Biology and Biological Engineering, South China University of Technology, Guangzhou 510006, P. R. China
| | - Zeyu Li
- MOE International Joint Research Laboratory on Synthetic Biology and Medicines, School of Biology and Biological Engineering, South China University of Technology, Guangzhou 510006, P. R. China
| | - Zhuang Zhou
- MOE International Joint Research Laboratory on Synthetic Biology and Medicines, School of Biology and Biological Engineering, South China University of Technology, Guangzhou 510006, P. R. China
| | - Qi Lei
- MOE International Joint Research Laboratory on Synthetic Biology and Medicines, School of Biology and Biological Engineering, South China University of Technology, Guangzhou 510006, P. R. China
| | - C Jeffrey Brinker
- Center for Micro-Engineered Materials, Department of Chemical and Biological Engineering, The University of New Mexico, Albuquerque, New Mexico 87131, United States
| | - Wei Zhu
- MOE International Joint Research Laboratory on Synthetic Biology and Medicines, School of Biology and Biological Engineering, South China University of Technology, Guangzhou 510006, P. R. China
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13
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Paternò GM, Bondelli G, Sakai VG, Sesti V, Bertarelli C, Lanzani G. The Effect of an Intramembrane Light-Actuator on the Dynamics of Phospholipids in Model Membranes and Intact Cells. LANGMUIR : THE ACS JOURNAL OF SURFACES AND COLLOIDS 2020; 36:11517-11527. [PMID: 32903010 DOI: 10.1021/acs.langmuir.0c01846] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/11/2023]
Abstract
The noncovalent intercalation of amphiphilic molecules in the lipid membrane can be exploited to modulate efficiently the physical status of the membrane. Such effects are largely employed in a range of applications, spanning from drug-delivery to therapeutics. In this context, we have very recently developed an intramembrane photo-actuator consisting of an amphiphilic azobenzene molecule, namely ZIAPIN2. The selective photo-isomerization occurring in the lipid bilayer induces a photo-triggered change in the membrane thickness and capacitance, eventually permitting to evoke light-induced neuronal firing both in vitro and in vivo. Here, we present a study on the dynamical perturbation in the lipid membrane caused by ZIAPIN2 and its vehicle solvent, dimethyl sulfoxide. Effects on the dynamics occurring in the picosecond time range and at the molecular level are probed using quasi-elastic neutron scattering. By coupling experiments carried out both on model membranes and intact cells, we found that DMSO leads to a general retardation of the dynamics within a more dynamically ordered landscape, a result that we attribute to the dehydration at the interface. On the other hand, ZIAPIN2 partitioning produces a general softening of the bilayer owing to its interaction with the lipids. These data are in agreement with our recent studies, which indicate that the efficacy of ZIAPIN2 in triggering cellular signalling stems from its ability to mechanically perturb the bilayer as a whole, by forming light-sensitive membrane spanning dimers.
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Affiliation(s)
- Giuseppe M Paternò
- Center for Nano Science and Technology, Istituto Italiano di Tecnologia, Via Pascoli 10, 20133 Milano, Italy
| | - Gaia Bondelli
- Center for Nano Science and Technology, Istituto Italiano di Tecnologia, Via Pascoli 10, 20133 Milano, Italy
| | - Victoria Garcia Sakai
- ISIS Pulsed Neutron and Muon Source, Science and Technology Facilities Council, Rutherford Appleton Laboratory, Harwell Science and Innovation Campus, Didcot OX11 0QX, U.K
| | - Valentina Sesti
- Dipartimento di Chimica, Materiali e Ingegneria Chimica ″Giulio Natta″, Politecnico di Milano, Piazza L. da Vinci 32, 20133 Milano, Italy
| | - Chiara Bertarelli
- Dipartimento di Chimica, Materiali e Ingegneria Chimica ″Giulio Natta″, Politecnico di Milano, Piazza L. da Vinci 32, 20133 Milano, Italy
| | - Guglielmo Lanzani
- Center for Nano Science and Technology, Istituto Italiano di Tecnologia, Via Pascoli 10, 20133 Milano, Italy
- Dipartimento di Fisica, Politecnico di Milano, Piazza L. da Vinci 32, 20133 Milano, Italy
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14
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Raju R, Bryant SJ, Wilkinson BL, Bryant G. The need for novel cryoprotectants and cryopreservation protocols: Insights into the importance of biophysical investigation and cell permeability. Biochim Biophys Acta Gen Subj 2020; 1865:129749. [PMID: 32980500 DOI: 10.1016/j.bbagen.2020.129749] [Citation(s) in RCA: 45] [Impact Index Per Article: 11.3] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/12/2020] [Revised: 09/16/2020] [Accepted: 09/22/2020] [Indexed: 12/31/2022]
Abstract
BACKGROUND Cryopreservation is a key method of preservation of biological material for both medical treatments and conservation of endangered species. In order to avoid cellular damage, cryopreservation relies on the addition of a suitable cryoprotective agent (CPA). However, the toxicity of CPAs is a serious concern and often requires rapid removal on thawing which is time consuming and expensive. SCOPE OF REVIEW The principles of Cryopreservation are reviewed and recent advances in cryopreservation methods and new CPAs are described. The importance of understanding key biophysical properties to assess the cryoprotective potential of new non-toxic compounds is discussed. MAJOR CONCLUSIONS Knowing the biophysical properties of a particular cell type is crucial for developing new cryopreservation protocols. Similarly, understanding how potential CPAs interact with cells is key for optimising protocols. For example, cells with a large osmotically inactive volume may require slower addition of CPAs. Similarly, a cell with low permeability may require a longer incubation time with the CPA to allow adequate penetration. Measuring these properties allows efficient optimisation of cryopreservation protocols. GENERAL SIGNIFICANCE Understanding the interplay between cells and biophysical properties is important not just for developing new, and better optimised, cryopreservation protocols, but also for broader research into topics such as dehydration and desiccation tolerance, chilling and heat stress, as well as membrane structure and function.
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Affiliation(s)
- Rekha Raju
- School of Science, RMIT University, Melbourne, Victoria 3001, Australia
| | - Saffron J Bryant
- School of Science, RMIT University, Melbourne, Victoria 3001, Australia.
| | - Brendan L Wilkinson
- School of Science and Technology, University of New England, Armidale, NSW 2351, Australia
| | - Gary Bryant
- School of Science, RMIT University, Melbourne, Victoria 3001, Australia.
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15
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Raju R, Torrent-Burgués J, Bryant G. Interactions of cryoprotective agents with phospholipid membranes - A Langmuir monolayer study. Chem Phys Lipids 2020; 231:104949. [DOI: 10.1016/j.chemphyslip.2020.104949] [Citation(s) in RCA: 12] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/28/2020] [Revised: 07/02/2020] [Accepted: 07/14/2020] [Indexed: 01/12/2023]
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16
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Tran NT, Mentink-Vigier F, Long JR. Dynamic Nuclear Polarization of Biomembrane Assemblies. Biomolecules 2020; 10:E1246. [PMID: 32867275 PMCID: PMC7565305 DOI: 10.3390/biom10091246] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/14/2020] [Revised: 08/10/2020] [Accepted: 08/11/2020] [Indexed: 01/02/2023] Open
Abstract
While atomic scale structural and dynamic information are hallmarks of nuclear magnetic resonance (NMR) methodologies, sensitivity is a fundamental limitation in NMR studies. Fully exploiting NMR capabilities to study membrane proteins is further hampered by their dilution within biological membranes. Recent developments in dynamic nuclear polarization (DNP), which can transfer the relatively high polarization of unpaired electrons to nuclear spins, show promise for overcoming the sensitivity bottleneck and enabling NMR characterization of membrane proteins under native-like conditions. Here we discuss fundamental aspects of DNP-enhanced solid-state NMR spectroscopy, experimental details relevant to the study of lipid assemblies and incorporated proteins, and sensitivity gains which can be realized in biomembrane-based samples. We also present unique insights which can be gained from DNP measurements and prospects for further development of the technique for elucidating structures and orientations of membrane proteins in native lipid environments.
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Affiliation(s)
- Nhi T. Tran
- Department of Chemistry, University of Florida, Gainesville, FL 32611, USA;
| | - Frédéric Mentink-Vigier
- National High Magnetic Field Laboratory, Florida State University, Tallahassee, FL 32310, USA;
| | - Joanna R. Long
- National High Magnetic Field Laboratory, Florida State University, Tallahassee, FL 32310, USA;
- Department of Biochemistry & Molecular Biology and McKnight Brain Institute, University of Florida, Gainesville, FL 32610, USA
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17
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Gironi B, Kahveci Z, McGill B, Lechner BD, Pagliara S, Metz J, Morresi A, Palombo F, Sassi P, Petrov PG. Effect of DMSO on the Mechanical and Structural Properties of Model and Biological Membranes. Biophys J 2020; 119:274-286. [PMID: 32610089 PMCID: PMC7376087 DOI: 10.1016/j.bpj.2020.05.037] [Citation(s) in RCA: 28] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/28/2019] [Revised: 04/08/2020] [Accepted: 05/22/2020] [Indexed: 12/23/2022] Open
Abstract
Dimethyl sulfoxide (DMSO) is widely used in a number of biological and biotechnological applications, mainly because of its effects on the cell plasma membrane, but the molecular origins of this action are yet to be fully clarified. In this work, we used two- and three-component synthetic membranes (liposomes) and the plasma membrane of human erythrocytes to investigate the effect of DMSO when added to the membrane-solvating environment. Fourier transform infrared spectroscopy and thermal fluctuation spectroscopy revealed significant differences in the response of the two types of liposome systems to DMSO in terms of the bilayer thermotropic behavior, available free volume of the bilayer, its excess surface area, and bending elasticity. DMSO also alters the mechanical properties of the erythrocyte membrane in a concentration-dependent manner and is capable of increasing membrane permeability to ATP at even relatively low concentrations (3% v/v and above). Taken in its entirety, these results show that DMSO is likely to have a differential effect on heterogeneous biological membranes, depending on their local composition and structure, and could affect membrane-hosted biological functions.
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Affiliation(s)
- Beatrice Gironi
- Dipartimento di Chimica Biologia e Biotecnologie, Università di Perugia, Perugia, Italy
| | - Zehra Kahveci
- Living Systems Institute and School of Biosciences, University of Exeter, Exeter, United Kingdom
| | - Beth McGill
- Department of Physics and Astronomy, University of Exeter, Exeter, United Kingdom
| | - Bob-Dan Lechner
- Department of Physics and Astronomy, University of Exeter, Exeter, United Kingdom
| | - Stefano Pagliara
- Living Systems Institute and School of Biosciences, University of Exeter, Exeter, United Kingdom
| | - Jeremy Metz
- Living Systems Institute and School of Biosciences, University of Exeter, Exeter, United Kingdom
| | - Assunta Morresi
- Dipartimento di Chimica Biologia e Biotecnologie, Università di Perugia, Perugia, Italy
| | - Francesca Palombo
- Department of Physics and Astronomy, University of Exeter, Exeter, United Kingdom
| | - Paola Sassi
- Dipartimento di Chimica Biologia e Biotecnologie, Università di Perugia, Perugia, Italy.
| | - Peter G Petrov
- Department of Physics and Astronomy, University of Exeter, Exeter, United Kingdom.
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18
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Burkey AA, Hillsley A, Harris DT, Baltzegar JR, Zhang DY, Sprague WW, Rosales AM, Lynd NA. Mechanism of Polymer-Mediated Cryopreservation Using Poly(methyl glycidyl sulfoxide). Biomacromolecules 2020; 21:3047-3055. [DOI: 10.1021/acs.biomac.0c00392] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/17/2023]
Affiliation(s)
- Aaron A. Burkey
- McKetta Department of Chemical Engineering, The University of Texas at Austin, Austin, Texas, United States
| | - Alexander Hillsley
- McKetta Department of Chemical Engineering, The University of Texas at Austin, Austin, Texas, United States
| | - Dale T. Harris
- McKetta Department of Chemical Engineering, The University of Texas at Austin, Austin, Texas, United States
| | - Jacob R. Baltzegar
- McKetta Department of Chemical Engineering, The University of Texas at Austin, Austin, Texas, United States
| | - Diana Y. Zhang
- McKetta Department of Chemical Engineering, The University of Texas at Austin, Austin, Texas, United States
| | - William W. Sprague
- McKetta Department of Chemical Engineering, The University of Texas at Austin, Austin, Texas, United States
| | - Adrianne M. Rosales
- McKetta Department of Chemical Engineering, The University of Texas at Austin, Austin, Texas, United States
| | - Nathaniel A. Lynd
- McKetta Department of Chemical Engineering, The University of Texas at Austin, Austin, Texas, United States
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19
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Venkatraman RK, Baiz CR. Ultrafast Dynamics at the Lipid-Water Interface: DMSO Modulates H-Bond Lifetimes. LANGMUIR : THE ACS JOURNAL OF SURFACES AND COLLOIDS 2020; 36:6502-6511. [PMID: 32423219 DOI: 10.1021/acs.langmuir.0c00870] [Citation(s) in RCA: 20] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/16/2023]
Abstract
Dimethyl sulfoxide (DMSO) is a common cosolvent and cryopreservation agent used to freeze cells and tissues. DMSO alters the H-bond structure of water, but its interactions with biomolecules and, specifically, with biological interfaces remain poorly understood. Here we investigate the effects of DMSO on the H-bond dynamics at the lipid-water interface using a combination of ultrafast two-dimensional infrared (2D IR) spectroscopy and molecular dynamics simulations. Ester carbonyl absorption spectra show that DMSO dehydrates the interface, and simulations show that the area per lipid is decreased. Ultrafast 2D IR spectra measure the time scales of frequency fluctuations at the ester carbonyl positions located precisely between the hydrophobic and hydrophilic regions of the membrane. 2D IR measurements show that low DMSO concentrations (<10 mol %) induce ∼40% faster H-bond dynamics compared with pure water, whereas increased concentrations (>10-20 mol %) once again slow down the dynamics. This slow-fast-slow trend is described in terms of two different solvation regimes. Below 10 mol %, DMSO weakens the interfacial H bond, leading to faster "bulk-like" dynamics, whereas above 10 mol %, water molecules become "relatively immobilized" as the H-bond networks becoming disrupted by the H-bond donor/acceptor imbalance at the interface. These studies are an important step toward characterizing the environments around lipid membranes, which are essential to numerous biological processes.
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Affiliation(s)
- Ravi Kumar Venkatraman
- Department of Chemistry, University of Texas at Austin, Austin, Texas 78712, United States
| | - Carlos R Baiz
- Department of Chemistry, University of Texas at Austin, Austin, Texas 78712, United States
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20
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The roles and applications of chaotropes and kosmotropes in industrial fermentation processes. World J Microbiol Biotechnol 2020; 36:89. [PMID: 32507915 DOI: 10.1007/s11274-020-02865-8] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/25/2020] [Accepted: 06/04/2020] [Indexed: 12/13/2022]
Abstract
Chaotropicity has long been recognised as a property of some compounds. Chaotropes tend to disrupt non-covalent interactions in biological macromolecules (e.g. proteins and nucleic acids) and supramolecular assemblies (e.g. phospholipid membranes). This results in the destabilisation and unfolding of these macromolecules and assemblies. Unsurprisingly, these compounds are typically harmful to living cells since they act against multiple targets, comprising cellular integrity and function. Kosmotropes are the opposite of chaotropes and these compounds promote the ordering and rigidification of biological macromolecules and assemblies. Since many biological macromolecules have optimum levels of flexibility, kosmotropes can also inhibit their activity and can be harmful to cells. Some products of industrial fermentations, most notably alcohols, are chaotropic. This property can be a limiting factor on rates of production and yields. It has been hypothesised that the addition of kosmotropes may mitigate the chaotropicity of some fermentation products. Some microbes naturally adapt to chaotropic environments by producing kosmotropic compatible solutes. Exploitation of this in industrial fermentations has been hampered by scientific and economic issues. The cost of the kosmotropes and their removal during purification needs to be considered. We lack a complete understanding of the chemistry of chaotropicity and a robust, quantitative framework for estimating overall chaotropicities of mixtures. This makes it difficult to predict the amount of kosmotrope required to neutralise the chaotropicity. This review considers examples of industrial fermentations where chaotropicity is an issue and suggests possible mitigations.
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21
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Monroe J, Barry M, DeStefano A, Aydogan Gokturk P, Jiao S, Robinson-Brown D, Webber T, Crumlin EJ, Han S, Shell MS. Water Structure and Properties at Hydrophilic and Hydrophobic Surfaces. Annu Rev Chem Biomol Eng 2020; 11:523-557. [PMID: 32169001 DOI: 10.1146/annurev-chembioeng-120919-114657] [Citation(s) in RCA: 33] [Impact Index Per Article: 8.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Abstract
The properties of water on both molecular and macroscopic surfaces critically influence a wide range of physical behaviors, with applications spanning from membrane science to catalysis to protein engineering. Yet, our current understanding of water interfacing molecular and material surfaces is incomplete, in part because measurement of water structure and molecular-scale properties challenges even the most advanced experimental characterization techniques and computational approaches. This review highlights progress in the ongoing development of tools working to answer fundamental questions on the principles that govern the interactions between water and surfaces. One outstanding and critical question is what universal molecular signatures capture the hydrophobicity of different surfaces in an operationally meaningful way, since traditional macroscopic hydrophobicity measures like contact angles fail to capture even basic properties of molecular or extended surfaces with any heterogeneity at the nanometer length scale. Resolving this grand challenge will require close interactions between state-of-the-art experiments, simulations, and theory, spanning research groups and using agreed-upon model systems, to synthesize an integrated knowledge of solvation water structure, dynamics, and thermodynamics.
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Affiliation(s)
- Jacob Monroe
- Department of Chemical Engineering, University of California, Santa Barbara, California 93106, USA;
| | - Mikayla Barry
- Department of Materials, University of California, Santa Barbara, California 93106, USA
| | - Audra DeStefano
- Department of Chemical Engineering, University of California, Santa Barbara, California 93106, USA;
| | - Pinar Aydogan Gokturk
- Advanced Light Source, Lawrence Berkeley National Laboratory, Berkeley, California 94720, USA
| | - Sally Jiao
- Department of Chemical Engineering, University of California, Santa Barbara, California 93106, USA;
| | - Dennis Robinson-Brown
- Department of Chemical Engineering, University of California, Santa Barbara, California 93106, USA;
| | - Thomas Webber
- Department of Chemical Engineering, University of California, Santa Barbara, California 93106, USA;
| | - Ethan J Crumlin
- Advanced Light Source, Lawrence Berkeley National Laboratory, Berkeley, California 94720, USA.,Chemical Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, USA
| | - Songi Han
- Department of Chemical Engineering, University of California, Santa Barbara, California 93106, USA; .,Department of Chemistry and Biochemistry, University of California, Santa Barbara, California 93106, USA
| | - M Scott Shell
- Department of Chemical Engineering, University of California, Santa Barbara, California 93106, USA;
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22
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Sieniawska E, Sawicki R, Golus J, Georgiev MI. Untargetted Metabolomic Exploration of the Mycobacterium tuberculosis Stress Response to Cinnamon Essential Oil. Biomolecules 2020; 10:biom10030357. [PMID: 32111061 PMCID: PMC7175327 DOI: 10.3390/biom10030357] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/06/2020] [Revised: 02/20/2020] [Accepted: 02/24/2020] [Indexed: 11/18/2022] Open
Abstract
The antimycobacterial activity of cinnamaldehyde has already been proven for laboratory strains and for clinical isolates. What is more, cinnamaldehyde was shown to threaten the mycobacterial plasma membrane integrity and to activate the stress response system. Following promising applications of metabolomics in drug discovery and development we aimed to explore the mycobacteria response to cinnamaldehyde within cinnamon essential oil treatment by untargeted liquid chromatography–mass spectrometry. The use of predictive metabolite pathway analysis and description of produced lipids enabled the evaluation of the stress symptoms shown by bacteria. This study suggests that bacteria exposed to cinnamaldehyde could reorganize their outer membrane as a physical barrier against stress factors. They probably lowered cell wall permeability and inner membrane fluidity, and possibly redirected carbon flow to store energy in triacylglycerols. Being a reactive compound, cinnamaldehyde may also contribute to disturbances in bacteria redox homeostasis and detoxification mechanisms.
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Affiliation(s)
- Elwira Sieniawska
- Chair and Department of Pharmacognosy, Medical University of Lublin, Chodzki 1, 20-093 Lublin, Poland
- Correspondence:
| | - Rafał Sawicki
- Chair and Department of Biochemistry and Biotechnology, Medical University of Lublin, Chodzki 1, 20-093 Lublin, Poland; (R.S.); (J.G.)
| | - Joanna Golus
- Chair and Department of Biochemistry and Biotechnology, Medical University of Lublin, Chodzki 1, 20-093 Lublin, Poland; (R.S.); (J.G.)
| | - Milen I. Georgiev
- Group of Plant Cell Biotechnology and Metabolomics, The Stephan Angeloff Institute of Microbiology, Bulgarian Academy of Sciences, 139 Ruski Blvd., 4000 Plovdiv, Bulgaria;
- Center of Plant Systems Biology and Biotechnology, 4000 Plovdiv, Bulgaria
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23
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Gabbutt C, Shen W, Seifert J, Contera S. AFM nanoindentation reveals decrease of elastic modulus of lipid bilayers near freezing point of water. Sci Rep 2019; 9:19473. [PMID: 31857622 PMCID: PMC6923397 DOI: 10.1038/s41598-019-55519-7] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/06/2019] [Accepted: 10/01/2019] [Indexed: 11/30/2022] Open
Abstract
Cell lipid membranes are the primary site of irreversible injury during freezing/thawing and cryopreservation of cells, but the underlying causes remain unknown. Here, we probe the effect of cooling from 20 °C to 0 °C on the structure and mechanical properties of 1,2-dipalmitoyl-sn-glycero-3-phosphocholine (DPPC) bilayers using atomic force microscopy (AFM) imaging and AFM-based nanoindentation in a liquid environment. The Young's modulus of elasticity (E) at each temperature for DPPC was obtained at different ionic strengths. Both at 20 mM and 150 mM NaCl, E of DPPC bilayers increases exponentially -as expected-as the temperature is lowered between 20 °C and 5 °C, but at 0 °C E drops from the values measured at 5 °C. Our results support the hypothesis that mechanical weakening of the bilayer at 0 °C is produced by structural changes at the lipid-fluid interface.
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Affiliation(s)
- Calum Gabbutt
- Clarendon Laboratory, Physics Department, University of Oxford, Parks Road, Oxford, OX1 3PU, UK
| | - Wuyi Shen
- Clarendon Laboratory, Physics Department, University of Oxford, Parks Road, Oxford, OX1 3PU, UK
| | - Jacob Seifert
- Clarendon Laboratory, Physics Department, University of Oxford, Parks Road, Oxford, OX1 3PU, UK
| | - Sonia Contera
- Clarendon Laboratory, Physics Department, University of Oxford, Parks Road, Oxford, OX1 3PU, UK.
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24
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Kumari P, Kashyap HK. DMSO induced dehydration of heterogeneous lipid bilayers and its impact on their structures. J Chem Phys 2019; 151:215103. [DOI: 10.1063/1.5127852] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022] Open
Affiliation(s)
- Pratibha Kumari
- Department of Chemistry, Indian Institute of Technology Delhi, Hauz Khas, New Delhi 110016, India
| | - Hemant K. Kashyap
- Department of Chemistry, Indian Institute of Technology Delhi, Hauz Khas, New Delhi 110016, India
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25
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Abou-Saleh RH, McLaughlan JR, Bushby RJ, Johnson BR, Freear S, Evans SD, Thomson NH. Molecular Effects of Glycerol on Lipid Monolayers at the Gas-Liquid Interface: Impact on Microbubble Physical and Mechanical Properties. LANGMUIR : THE ACS JOURNAL OF SURFACES AND COLLOIDS 2019; 35:10097-10105. [PMID: 30901226 DOI: 10.1021/acs.langmuir.8b04130] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/21/2023]
Abstract
The production and stability of microbubbles (MBs) is enhanced by increasing the viscosity of both the formation and storage solution, respectively. Glycerol is a good candidate for biomedical applications of MBs, since it is biocompatible, although the exact molecular mechanisms of its action is not fully understood. Here, we investigate the influence glycerol has on lipid-shelled MB properties, using a range of techniques. Population lifetime and single bubble stability were studied using optical microscopy. Bubble stiffness measured by AFM compression is compared with lipid monolayer behavior in a Langmuir-Blodgett trough. We deduce that increasing glycerol concentrations enhances stability of MB populations through a 3-fold mechanism. First, binding of glycerol to lipid headgroups in the interfacial monolayer up to 10% glycerol increases MB stiffness but has limited impact on shell resistance to gas permeation and corresponding MB lifetime. Second, increased solution viscosity above 10% glycerol slows down the kinetics of gas transfer, markedly increasing MB stability. Third, above 10%, glycerol induces water structuring around the lipid monolayer, forming a glassy layer which also increases MB stiffness and resistance to gas loss. At 30% glycerol, the glassy layer is ablated, lowering the MB stiffness, but MB stability is further augmented. Although the molecular interactions of glycerol with the lipid monolayer modulate the MB lipid shell properties, MB lifetime continually increases from 0 to 30% glycerol, indicating that its viscosity is the dominant effect on MB solution stability. This three-fold action and biocompatibility makes glycerol ideal for therapeutic MB formation and storage and gives new insight into the action of glycerol on lipid monolayers at the gas-liquid interface.
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Affiliation(s)
- Radwa H Abou-Saleh
- Molecular and Nanoscale Physics Group, School of Physics and Astronomy , University of Leeds , Leeds LS2 9JT , United Kingdom
- Biophysics Group, Department of Physics, Faculty of Science , Mansoura University , Mansoura , Egypt
| | - James R McLaughlan
- School of Electronic and Electrical Engineering , University of Leeds , Leeds LS2 9JT , United Kingdom
- Leeds Institute of Medical Research , University of Leeds, St. James's University Hospital , Leeds LS9 7TF , United Kingdom
| | - Richard J Bushby
- School of Chemistry , University of Leeds , Leeds LS2 9JT , United Kingdom
| | - Benjamin R Johnson
- Molecular and Nanoscale Physics Group, School of Physics and Astronomy , University of Leeds , Leeds LS2 9JT , United Kingdom
| | - Steven Freear
- School of Electronic and Electrical Engineering , University of Leeds , Leeds LS2 9JT , United Kingdom
| | - Stephen D Evans
- Molecular and Nanoscale Physics Group, School of Physics and Astronomy , University of Leeds , Leeds LS2 9JT , United Kingdom
| | - Neil H Thomson
- Molecular and Nanoscale Physics Group, School of Physics and Astronomy , University of Leeds , Leeds LS2 9JT , United Kingdom
- Division of Oral Biology, School of Dentistry , University of Leeds , Leeds LS2 9LU , United Kingdom
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26
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Good DB, Voinov MA, Bolton D, Ward ME, Sergeyev IV, Caporini M, Scheffer P, Lo A, Rosay M, Marek A, Brown LS, I Smirnov A, Ladizhansky V. A biradical-tagged phospholipid as a polarizing agent for solid-state MAS Dynamic Nuclear Polarization NMR of membrane proteins. SOLID STATE NUCLEAR MAGNETIC RESONANCE 2019; 100:92-101. [PMID: 31029957 PMCID: PMC6709687 DOI: 10.1016/j.ssnmr.2019.04.003] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/26/2018] [Revised: 03/29/2019] [Accepted: 04/12/2019] [Indexed: 06/01/2023]
Abstract
A novel Dynamic Nuclear Polarization (DNP) NMR polarizing agent ToSMTSL-PTE representing a phospholipid with a biradical TOTAPOL tethered to the polar head group has been synthesized, characterized, and employed to enhance solid-state Nuclear Magnetic Resonance (SSNMR) signal of a lipid-reconstituted integral membrane protein proteorhodopsin (PR). A matrix-free PR formulation for DNP improved the absolute sensitivity of NMR signal by a factor of ca. 4 compared to a conventional preparation with TOTAPOL dispersed in a glassy glycerol/water matrix. DNP enhancements measured at 400 MHz/263 GHz and 600 MHz/395 GHz showed a strong field dependence but remained moderate at both fields, and comparable to those obtained for PR covalently modified with ToSMTSL. Additional continuous wave (CW) X-band electron paramagnetic resonance (EPR) experiments with ToSMTSL-PTE in solutions and in lipid bilayers revealed that an unfavorable conformational change of the linker connecting mononitroxides could be one of the reasons for moderate DNP enhancements. Further, differential scanning calorimetry (DSC) and CW EPR experiments indicated an inhomogeneous distribution and/or a possibility of a partial aggregation of ToSMTSL-PTE in DMPC:DMPA bilayers when the concentration of the polarizing agent was increased to 20 mol% to maximize the DNP enhancement. Thus, conformational changes and an inhomogeneous distribution of the lipid-based biradicals in lipid bilayers emerged as important factors to consider for further development of this matrix-free approach for DNP of membrane proteins.
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Affiliation(s)
- Daryl B Good
- Department of Physics and Biophysics Interdepartmental Group, University of Guelph, Guelph, Ontario, Canada
| | - Maxim A Voinov
- Department of Chemistry, North Carolina State University, Raleigh, NC, USA
| | - David Bolton
- Department of Physics and Biophysics Interdepartmental Group, University of Guelph, Guelph, Ontario, Canada
| | - Meaghan E Ward
- Department of Physics and Biophysics Interdepartmental Group, University of Guelph, Guelph, Ontario, Canada
| | | | | | - Peter Scheffer
- Department of Physics and Biophysics Interdepartmental Group, University of Guelph, Guelph, Ontario, Canada
| | - Andy Lo
- Department of Physics and Biophysics Interdepartmental Group, University of Guelph, Guelph, Ontario, Canada
| | | | - Antonin Marek
- Department of Chemistry, North Carolina State University, Raleigh, NC, USA
| | - Leonid S Brown
- Department of Physics and Biophysics Interdepartmental Group, University of Guelph, Guelph, Ontario, Canada
| | - Alex I Smirnov
- Department of Chemistry, North Carolina State University, Raleigh, NC, USA; Bruker Biospin, Billerica, MA, USA.
| | - Vlad Ladizhansky
- Department of Physics and Biophysics Interdepartmental Group, University of Guelph, Guelph, Ontario, Canada; Bruker Biospin, Billerica, MA, USA.
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27
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Wolkers WF, Oldenhof H, Tang F, Han J, Bigalk J, Sieme H. Factors Affecting the Membrane Permeability Barrier Function of Cells during Preservation Technologies. LANGMUIR : THE ACS JOURNAL OF SURFACES AND COLLOIDS 2019; 35:7520-7528. [PMID: 30501184 DOI: 10.1021/acs.langmuir.8b02852] [Citation(s) in RCA: 17] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/09/2023]
Abstract
Cellular membranes are exposed to extreme conditions during the processing steps involved in cryopreservation (and freeze-drying) of cells. The first processing step involves adding protective agents. Exposing cells to protective agents causes fluxes of both water and solutes (i.e., permeating cryoprotective agents) across the cellular membrane, resulting in cell volume changes and possibly osmotic stress. In addition, protective molecules may interact with lipids, which may lead to membrane structural changes and permeabilization. After loading with protective agents, subsequent freezing exposes cells to severe osmotic and mechanical stresses, caused by extra and/or intracellular ice formation and a drastically increased solute concentration in the unfrozen fraction. Furthermore, cellular membranes undergo thermotropic and lyotropic phase transitions during cooling and freezing, which drastically alter the membrane permeability and its barrier function. In this article, it is shown that membrane permeability to water and solutes is dependent on the temperature, medium osmolality, types of solutes present, cell hydration level, and absence or presence of ice. Freezing most drastically alters the membrane permeability barrier function, which is reflected as a change in the activation energy for water transport. In addition, membranes become temporarily leaky during freezing-induced fluid-to-gel membrane phase transitions, resulting in the uptake of impermeable solutes.
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Affiliation(s)
- Willem F Wolkers
- Institute of Multiphase Processes , Leibniz Universität Hannover , Callinstrasse 36 , Hannover 30167 , Germany
| | - Harriëtte Oldenhof
- Unit for Reproductive Medicine, Clinic for Horses , University of Veterinary Medicine Hannover , Buenteweg 15 , Hannover 30559 , Germany
| | - Fengrui Tang
- Institute of Multiphase Processes , Leibniz Universität Hannover , Callinstrasse 36 , Hannover 30167 , Germany
| | - Jiale Han
- Institute of Multiphase Processes , Leibniz Universität Hannover , Callinstrasse 36 , Hannover 30167 , Germany
- Unit for Reproductive Medicine, Clinic for Horses , University of Veterinary Medicine Hannover , Buenteweg 15 , Hannover 30559 , Germany
| | - Judith Bigalk
- Unit for Reproductive Medicine, Clinic for Horses , University of Veterinary Medicine Hannover , Buenteweg 15 , Hannover 30559 , Germany
| | - Harald Sieme
- Unit for Reproductive Medicine, Clinic for Horses , University of Veterinary Medicine Hannover , Buenteweg 15 , Hannover 30559 , Germany
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28
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Budziak I, Arczewska M, Sachadyn-Król M, Matwijczuk A, Waśko A, Gagoś M, Terpiłowski K, Kamiński DM. Effect of polyols on the DMPC lipid monolayers and bilayers. BIOCHIMICA ET BIOPHYSICA ACTA-BIOMEMBRANES 2018; 1860:2166-2174. [PMID: 30409512 DOI: 10.1016/j.bbamem.2018.08.014] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/27/2018] [Revised: 08/07/2018] [Accepted: 08/24/2018] [Indexed: 10/28/2022]
Abstract
In this study, the effect of polyols, erythritol, xylitol, mannitol, on a model membrane systems composed of DMPC was investigated using differential scanning calorimetry and Fourier transform infrared spectroscopy. Generally, it is considered that polyols possess strong hydrophilic properties, and either does not interact with the hydrophobic environment at all, or these interactions are very weak. To better understand the mutual interactions between polyols and the lipid system, the Langmuir technique was used to examine the molecular organization of monolayers and to calculate their thickness in the presence of polyols at the subphase. The detailed description of the interactions between polyols and DMPC molecules was complemented by the analysis of the morphology of monolayers with the application of Brewster angle microscopy. From ATR FTIR, the significant spectral shift is observed only for the PO2- stretching band, which correlates strongly with the polyol chain-length. The longer the polyol chain, the weaker the observed interactions with lipid molecules. The most important findings, obtained from thickness measurements, reveal that short-chain polyols may prevent the formation of bilayers by the DMPC molecules under high surface pressure. The changes in the organization of DMPC monolayers on the surface, as visualized by Brewster angle microscopy, showed that the domains observed for phospholipid film spread on pure water differ substantially from those containing polyols in the subphase.
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Affiliation(s)
- Iwona Budziak
- Department of Chemistry, University of Life Sciences in Lublin, Akademicka 15, 20-950 Lublin, Poland
| | - Marta Arczewska
- Department of Biophysics, University of Life Sciences in Lublin, Akademicka 13, 20-950 Lublin, Poland
| | - Monika Sachadyn-Król
- Department of Chemistry, University of Life Sciences in Lublin, Akademicka 15, 20-950 Lublin, Poland
| | - Arkadiusz Matwijczuk
- Department of Biophysics, University of Life Sciences in Lublin, Akademicka 13, 20-950 Lublin, Poland
| | - Adam Waśko
- Department of Biotechnology, Microbiology and Human Nutrition, University of Life Sciences in Lublin, Skromna 8, 20-704 Lublin, Poland
| | - Mariusz Gagoś
- Department of Cell Biology, Institute of Biology, Maria Curie-Skłodowska University, 20-033 Lublin, Poland
| | - Konrad Terpiłowski
- Department of Interfacial Phenomena, Faculty of Chemistry, Maria Curie-Skłodowska University, Maria Curie-Skłodowska Square 3, 20-031 Lublin, Poland
| | - Daniel M Kamiński
- Department of Crystallography, Faculty of Chemistry, Maria Curie-Skłodowska University, Maria Curie Skłodowska Square 3, Lublin 20-031, Poland.
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29
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Daschakraborty S. How do glycerol and dimethyl sulphoxide affect local tetrahedral structure of water around a nonpolar solute at low temperature? Importance of preferential interaction. J Chem Phys 2018; 148:134501. [PMID: 29626866 DOI: 10.1063/1.5019239] [Citation(s) in RCA: 24] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
Glycerol and dimethyl sulphoxide (DMSO) have vital roles in cryoprotection of living cells, tissues, etc. The above action has been directly linked with disruption of hydrogen (H-) bond structure and dynamics of water by these cosolvents at bulk region and around various complex units, such as peptide, amino acid, protein, and lipid membrane. However, the disruption of the local structure of the water solvent around a purely hydrophobic solute is still not studied extensively. The latter is also important in the context of stabilization of protein from cold denaturation. Through all-atom molecular dynamics simulation, we have investigated the comparative effect of glycerol and DMSO on the orientational order of water around a nonpolar solute at -5 °C. A steady reduction of the tetrahedral order of water is observed at bulk (>10 Å distance from the solute) and solute interface (<5.5 Å distance from the solute) with increasing the cosolvent concentration. Contrasting roles of glycerol and DMSO have been evidenced. While DMSO affects the H-bond structure of the interfacial water more than that of the bulk water, glycerol affects the water structure almost uniformly at all regions around the solute. Furthermore, while glycerol helps to retain water molecules at the interface, DMSO significantly reduces the water content in that region. We have put forward a plausible mechanism for these contrasting roles of these cosolvents. The solute-cosolvent hydrophobic-interaction-induced orientational alignment of an interfacial cosolvent molecule determines whether the involvement of the cosolvent molecules in H-bonding with solvent water in the interface is akin to the bulk region or not.
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30
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Abstract
An in-depth knowledge of the interaction of water with amorphous silica is critical to fundamental studies of interfacial hydration water, as well as to industrial processes such as catalysis, nanofabrication, and chromatography. Silica has a tunable surface comprising hydrophilic silanol groups and moderately hydrophobic siloxane groups that can be interchanged through thermal and chemical treatments. Despite extensive studies of silica surfaces, the influence of surface hydrophilicity and chemical topology on the molecular properties of interfacial water is not well understood. In this work, we controllably altered the surface silanol density, and measured surface water diffusivity using Overhauser dynamic nuclear polarization (ODNP) and complementary silica-silica interaction forces across water using a surface forces apparatus (SFA). The results show that increased silanol density generally leads to slower water diffusivity and stronger silica-silica repulsion at short aqueous separations (less than ∼4 nm). Both techniques show sharp changes in hydration properties at intermediate silanol densities (2.0-2.9 nm-2). Molecular dynamics simulations of model silica-water interfaces corroborate the increase in water diffusivity with silanol density, and furthermore show that even on a smooth and crystalline surface at a fixed silanol density, adjusting the spatial distribution of silanols results in a range of surface water diffusivities spanning ∼10%. We speculate that a critical silanol cluster size or connectivity parameter could explain the sharp transition in our results, and can modulate wettability, colloidal interactions, and surface reactions, and thus is a phenomenon worth further investigation on silica and chemically heterogeneous surfaces.
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31
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Biller JR, Barnes R, Han S. Perspective of Overhauser dynamic nuclear polarization for the study of soft materials. Curr Opin Colloid Interface Sci 2018. [DOI: 10.1016/j.cocis.2018.02.007] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/01/2023]
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32
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Itin B, Sergeyev IV. Strategies for Efficient Sample Preparation for Dynamic Nuclear Polarization Solid-State NMR of Biological Macromolecules. Methods Mol Biol 2018; 1688:133-154. [PMID: 29151208 DOI: 10.1007/978-1-4939-7386-6_7] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/07/2023]
Abstract
Solid-state NMR (SSNMR) is a powerful tool for the elucidation of structure and dynamics in biological macromolecules. Over the years, SSNMR spectroscopists have developed an array of techniques enabling the measurement of internuclear correlations, distances, and torsional angles; these have been applied to the study of a number of biological systems that are difficult to study by X-ray crystallography and solution NMR, including key biological targets such as membrane proteins and amyloid fibrils. Applications of SSNMR to other topic areas, including materials science, pharmaceuticals, and small molecules, have also flourished in recent years. These studies, however, have always been hampered by the low inherent sensitivity of SSNMR, requiring large amounts of both sample and time for data collection. By taking advantage of unpaired electrons doped into a sample as a ready source of additional nuclear polarization, dynamic nuclear polarization (DNP) has brought about large improvements in SSNMR sensitivity. These, in turn, have enabled structural studies of previously inaccessible targets, such as large protein complexes, nucleic acids, viral capsids, and membrane proteins in vivo. Herein, we focus on sample preparation strategies and considerations for scientists interested in applying DNP to challenging systems.
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Affiliation(s)
- Boris Itin
- New York Structural Biology Center, 89 Convent Avenue, New York, NY, 10027, USA.
| | - Ivan V Sergeyev
- Bruker Biospin Corporation, 15 Fortune Drive, Billerica, MA, 01821, USA
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33
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Sydykov B, Oldenhof H, de Oliveira Barros L, Sieme H, Wolkers WF. Membrane permeabilization of phosphatidylcholine liposomes induced by cryopreservation and vitrification solutions. BIOCHIMICA ET BIOPHYSICA ACTA-BIOMEMBRANES 2017; 1860:467-474. [PMID: 29100892 DOI: 10.1016/j.bbamem.2017.10.031] [Citation(s) in RCA: 23] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/18/2017] [Revised: 10/13/2017] [Accepted: 10/28/2017] [Indexed: 01/04/2023]
Abstract
Membranes are the primary site of freezing injury during cryopreservation or vitrification of cells. Addition of cryoprotective agents (CPAs) can reduce freezing damage, but can also disturb membrane integrity causing leakage of intracellular constituents. The aim of this study was to investigate lipid-CPA interactions in a liposome model system to obtain insights in mechanisms of cellular protection and toxicity during cryopreservation or vitrification processing. Various CPAs were studied including dimethyl sulfoxide (DMSO), glycerol (GLY), ethylene glycol (EG), dimethyl formamide (DMF), and propylene glycol (PG). Protection against leakage of phosphatidylcholine liposomes encapsulated with carboxyfluorescein (CF) was studied upon CPA addition as well as after freezing-and-thawing. Molecular interactions between CPAs and phospholipid acyl chains and headgroups as well as membrane phase behavior were studied using Fourier transform infrared spectroscopy. A clear difference was observed between the effects of DMSO on PC-liposomes compared to the other CPAs tested, both for measurements on CF-retention and membrane phase behavior. All CPAs were found to inhibit membrane leakiness during freezing. However, exposure to high CPA concentrations already caused leakage before freezing, increasing in the order DMSO, EG, DMF/PG, and GLY. With DMSO, liposomes were able to withstand up to 6M concentrations compared to only 1M for GLY. Cholesterol addition to PC-liposomes increased membrane stability towards leakiness. DMSO was found to dehydrate the phospholipid headgroups while raising the membrane phase transition temperature, whereas the other CPAs caused an increase in the hydration level of the lipid headgroups while decreasing the membrane phase transition temperature.
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Affiliation(s)
- Bulat Sydykov
- Institute of Multiphase Processes, Leibniz Universität Hannover, Hannover, Germany
| | - Harriëtte Oldenhof
- Unit for Reproductive Medicine, Clinic for Horses, University of Veterinary Medicine Hannover, Hannover, Germany
| | - Lawrence de Oliveira Barros
- Unit for Reproductive Medicine, Clinic for Horses, University of Veterinary Medicine Hannover, Hannover, Germany
| | - Harald Sieme
- Unit for Reproductive Medicine, Clinic for Horses, University of Veterinary Medicine Hannover, Hannover, Germany
| | - Willem F Wolkers
- Institute of Multiphase Processes, Leibniz Universität Hannover, Hannover, Germany.
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34
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Noda M, Ma Y, Yoshikawa Y, Imanaka T, Mori T, Furuta M, Tsuruyama T, Yoshikawa K. A single-molecule assessment of the protective effect of DMSO against DNA double-strand breaks induced by photo-and γ-ray-irradiation, and freezing. Sci Rep 2017; 7:8557. [PMID: 28819291 PMCID: PMC5561226 DOI: 10.1038/s41598-017-08894-y] [Citation(s) in RCA: 15] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/26/2017] [Accepted: 07/14/2017] [Indexed: 11/09/2022] Open
Abstract
Dimethyl sulfoxide (DMSO) is widely used as a cryoprotectant for organs, tissues, and cell suspension in storage. In addition, DMSO is known to be a useful free radical scavenger and a radio-protectant. To date, many in vitro assays using cultured cells have been performed for analysing the protective effect of DMSO against genomic DNA damage; however, currently it has been rather difficult to detect DNA double strand breaks (DSBs) in a quantitative manner. In the present study, we aimed to observe the extent of DNA damage by use of single molecular observation with a fluorescence microscope to evaluate DSBs induced by photo- and γ-ray-irradiation, or freeze/thawing in variable concentrations of DMSO. As a result, we found that 2% DMSO conferred the maximum protective effect against all of the injury sources tested, and these effects were maintained at higher concentrations. Further, DMSO showed a significantly higher protective effect against freezing-induced damage than against photo- and γ-ray-irradiation-induced damage. Our study provides significant data for the optimization of DNA cryopreservation with DMSO, as well as for the usage of DNA as the protective agent against the injuries caused by active oxygen and radiations.
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Affiliation(s)
- Masami Noda
- Faculty of Life and Medical Sciences, Doshisha University, Kyoto, 610-0321, Japan
| | - Yue Ma
- Faculty of Life and Medical Sciences, Doshisha University, Kyoto, 610-0321, Japan
| | - Yuko Yoshikawa
- Faculty of Life and Medical Sciences, Doshisha University, Kyoto, 610-0321, Japan
| | - Tadayuki Imanaka
- Research Organization of Science and Technology, Ritsumeikan University, Shiga, 525-8577, Japan
| | - Toshiaki Mori
- Graduate School of Engineering, Department of Quantum and Radiation Technology, Osaka Prefecture University, Osaka, 599-8570, Japan
| | - Masakazu Furuta
- Graduate School of Engineering, Department of Quantum and Radiation Technology, Osaka Prefecture University, Osaka, 599-8570, Japan
| | - Tatsuaki Tsuruyama
- Drug Discovery and Medicine, Department of Pathology, Graduate School of Medicine, Kyoto University, Kyoto, 606-8501, Japan
| | - Kenichi Yoshikawa
- Faculty of Life and Medical Sciences, Doshisha University, Kyoto, 610-0321, Japan.
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35
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Sukenik S, Dunsky S, Barnoy A, Shumilin I, Harries D. TMAO mediates effective attraction between lipid membranes by partitioning unevenly between bulk and lipid domains. Phys Chem Chem Phys 2017; 19:29862-29871. [DOI: 10.1039/c7cp04603k] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/22/2023]
Abstract
TMAO induces an attractive force between lipid bilayers. The force is traced to the preferential repulsion of the osmolyte from lipid.
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Affiliation(s)
- Shahar Sukenik
- Institute of Chemistry and the Fritz Haber Research Center
- The Hebrew University
- Jerusalem 91904
- Israel
| | - Shaked Dunsky
- Institute of Chemistry and the Fritz Haber Research Center
- The Hebrew University
- Jerusalem 91904
- Israel
| | - Avishai Barnoy
- Institute of Chemistry and the Fritz Haber Research Center
- The Hebrew University
- Jerusalem 91904
- Israel
| | - Ilan Shumilin
- Institute of Chemistry and the Fritz Haber Research Center
- The Hebrew University
- Jerusalem 91904
- Israel
| | - Daniel Harries
- Institute of Chemistry and the Fritz Haber Research Center
- The Hebrew University
- Jerusalem 91904
- Israel
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36
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Naughton BS, Reich NO. Mechanisms of Protein Translocation on DNA Are Differentially Responsive to Water Activity. Biochemistry 2016; 55:6957-6960. [PMID: 27992993 DOI: 10.1021/acs.biochem.6b00872] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Water plays important but poorly understood roles in the functions of most biomolecules. We are interested in understanding how proteins use diverse search mechanisms to locate specific sites on DNA; here we present a study of the role of closely associated waters in diverse translocation mechanisms. The bacterial DNA adenine methyltransferase, Dam, moves across large segments of DNA using an intersegmental hopping mechanism, relying in part on movement through bulk water. In contrast, other proteins, such as the bacterial restriction endonuclease EcoRI, rely on a sliding mechanism, requiring the protein to stay closely associated with DNA. Here we probed how these two mechanistically distinct proteins respond to well-characterized osmolytes, dimethyl sulfoxide (DMSO), and glycerol. The ability of Dam to move over large segments of DNA is not impacted by either osmolyte, consistent with its minimal reliance on a sliding mechanism. In contrast, EcoRI endonuclease translocation is significantly enhanced by DMSO and inhibited by glycerol, providing further corroboration that these proteins rely on distinct translocation mechanisms. The well-established similar effects of these osmolytes on bulk water, and their differential effects on macromolecule-associated waters, support our results and provide further evidence of the importance of water in interactions between macromolecules and their ligands.
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Affiliation(s)
- Brigitte S Naughton
- Department of Chemistry and Biochemistry, University of California , Santa Barbara, California 93106, United States
| | - Norbert O Reich
- Department of Chemistry and Biochemistry, University of California , Santa Barbara, California 93106, United States
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