1
|
Li H, Lv CT, Li YT, Gao GY, Meng YF, You YL, Tian Q, Liang KQ, Chen Y, Chen H, Xia C, Rui XY, Zheng HL, Wei MY. RNA-sequencing transcriptome analysis of Avicennia marina (Forsk.) Vierh. leaf epidermis defines tissue-specific transcriptional response to salinity treatment. Sci Rep 2023; 13:7614. [PMID: 37165000 PMCID: PMC10172313 DOI: 10.1038/s41598-023-34095-x] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/30/2022] [Accepted: 04/24/2023] [Indexed: 05/12/2023] Open
Abstract
Avicennia marina (Forsk.) Vierh. is a typical mangrove plant. Its epidermis contains salt glands, which can secrete excess salts onto the leaf surfaces, improving the salt tolerance of the plants. However, knowledge on the epidermis-specific transcriptional responses of A. marina to salinity treatment is lacking. Thus, physiological and transcriptomic techniques were applied to unravel the salt tolerance mechanism of A. marina. Our results showed that 400 mM NaCl significantly reduced the plant height, leaf area, leaf biomass and photosynthesis of A. marina. In addition, 1565 differentially expressed genes were identified, of which 634 and 931 were up- and down-regulated. Based on Kyoto Encyclopedia of Genes and Genomes metabolic pathway enrichment analysis, we demonstrated that decreased gene expression, especially that of OEE1, PQL2, FDX3, ATPC, GAPDH, PRK, FBP and RPE, could explain the inhibited photosynthesis caused by salt treatment. Furthermore, the ability of A. marina to cope with 400 mM NaCl treatment was dependent on appropriate hormone signalling and potential sulfur-containing metabolites, such as hydrogen sulfide and cysteine biosynthesis. Overall, the present study provides a theoretical basis for the adaption of A. marina to saline habitats and a reference for studying the salt tolerance mechanism of other mangrove plants.
Collapse
Affiliation(s)
- Huan Li
- College of Food and Bio-Engineering, Bengbu University, Bengbu, Anhui, 233030, People's Republic of China
| | - Chao-Tian Lv
- College of Food and Bio-Engineering, Bengbu University, Bengbu, Anhui, 233030, People's Republic of China
| | - Yun-Tao Li
- College of Food and Bio-Engineering, Bengbu University, Bengbu, Anhui, 233030, People's Republic of China
| | - Guo-Yv Gao
- College of Food and Bio-Engineering, Bengbu University, Bengbu, Anhui, 233030, People's Republic of China
| | - Ya-Fei Meng
- College of Food and Bio-Engineering, Bengbu University, Bengbu, Anhui, 233030, People's Republic of China
| | - Yv-Le You
- College of Food and Bio-Engineering, Bengbu University, Bengbu, Anhui, 233030, People's Republic of China
| | - Qi Tian
- College of Food and Bio-Engineering, Bengbu University, Bengbu, Anhui, 233030, People's Republic of China
| | - Kun-Qi Liang
- College of Food and Bio-Engineering, Bengbu University, Bengbu, Anhui, 233030, People's Republic of China
| | - Yu Chen
- College of Food and Bio-Engineering, Bengbu University, Bengbu, Anhui, 233030, People's Republic of China
| | - Hao Chen
- College of Food and Bio-Engineering, Bengbu University, Bengbu, Anhui, 233030, People's Republic of China
| | - Chao Xia
- College of Food and Bio-Engineering, Bengbu University, Bengbu, Anhui, 233030, People's Republic of China
| | - Xiang-Yun Rui
- College of Food and Bio-Engineering, Bengbu University, Bengbu, Anhui, 233030, People's Republic of China.
| | - Hai-Lei Zheng
- Key Laboratory for Subtropical Wetland Ecosystem Research of MOE, College of the Environment and Ecology, Xiamen University, Xiamen, Fujian, 361005, People's Republic of China.
| | - Ming-Yue Wei
- School of Ecology, Resources and Environment, Dezhou University, DeZhou, Shandong, 253000, People's Republic of China.
| |
Collapse
|
2
|
Mehrez M, Romand S, Field B. New perspectives on the molecular mechanisms of stress signalling by the nucleotide guanosine tetraphosphate (ppGpp), an emerging regulator of photosynthesis in plants and algae. THE NEW PHYTOLOGIST 2023; 237:1086-1099. [PMID: 36349398 PMCID: PMC10107265 DOI: 10.1111/nph.18604] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 08/19/2022] [Accepted: 10/13/2022] [Indexed: 06/16/2023]
Abstract
The nucleotides guanosine tetraphosphate and guanosine pentaphosphate (together (p)ppGpp) are found in a wide range of prokaryotic and eukaryotic organisms where they are associated with stress signalling. In this review, we will discuss recent research highlighting the role of (p)ppGpp signalling as a conserved regulator of photosynthetic activity in the chloroplasts of plants and algae, and the latest discoveries that open up new perspectives on the emerging roles of (p)ppGpp in acclimation to environmental stress. We explore how rapid advances in the study of (p)ppGpp signalling in prokaryotes are now revealing large gaps in our understanding of the molecular mechanisms of signalling by (p)ppGpp and related nucleotides in plants and algae. Filling in these gaps is likely to lead to the discovery of conserved as well as new plant- and algal-specific (p)ppGpp signalling mechanisms that will offer new insights into the taming of the chloroplast and the regulation of stress tolerance.
Collapse
Affiliation(s)
- Marwa Mehrez
- Aix‐Marseille University, CEA, CNRS, BIAM, UMR726513009MarseilleFrance
- Faculty of Sciences of Tunis, Laboratory of Molecular Genetics, Immunology and BiotechnologyUniversity of Tunis El Manar2092TunisTunisia
| | - Shanna Romand
- Aix‐Marseille University, CEA, CNRS, BIAM, UMR726513009MarseilleFrance
| | - Ben Field
- Aix‐Marseille University, CEA, CNRS, BIAM, UMR726513009MarseilleFrance
| |
Collapse
|
3
|
Vidal‐Meireles A, Kuntam S, Széles E, Tóth D, Neupert J, Bock R, Tóth SZ. The lifetime of the oxygen-evolving complex subunit PSBO depends on light intensity and carbon availability in Chlamydomonas. PLANT, CELL & ENVIRONMENT 2023; 46:422-439. [PMID: 36320098 PMCID: PMC10100022 DOI: 10.1111/pce.14481] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 08/22/2022] [Revised: 10/13/2022] [Accepted: 10/14/2022] [Indexed: 06/16/2023]
Abstract
PSBO is essential for the assembly of the oxygen-evolving complex in plants and green algae. Despite its importance, we lack essential information on its lifetime and how it depends on the environmental conditions. We have generated nitrate-inducible PSBO amiRNA lines in the green alga Chlamydomonas reinhardtii. Transgenic strains grew normally under non-inducing conditions, and their photosynthetic performance was comparable to the control strain. Upon induction of the PSBO amiRNA constructs, cell division halted. In acetate-containing medium, cellular PSBO protein levels decreased by 60% within 24 h in the dark, by 75% in moderate light, and in high light, the protein completely degraded. Consequently, the photosynthetic apparatus became strongly damaged, probably due to 'donor-side-induced photoinhibition', and cellular ultrastructure was also severely affected. However, in the absence of acetate during induction, PSBO was remarkably stable at all light intensities and less substantial changes occurred in photosynthesis. Our results demonstrate that the lifetime of PSBO strongly depends on the light intensity and carbon availability, and thus, on the metabolic status of the cells. We also confirm that PSBO is required for photosystem II stability in C. reinhardtii and demonstrate that its specific loss also entails substantial changes in cell morphology and cell cycle.
Collapse
Affiliation(s)
- André Vidal‐Meireles
- Laboratory for Molecular Photobioenergetics, Biological Research CentreInstitute of Plant BiologySzegedHungary
- Present address:
Institute of Plant Biology and Biotechnology (IBBP), Westfälische Wilhelms‐Universität Münster (WWU)MünsterGermany
| | - Soujanya Kuntam
- Laboratory for Molecular Photobioenergetics, Biological Research CentreInstitute of Plant BiologySzegedHungary
| | - Eszter Széles
- Laboratory for Molecular Photobioenergetics, Biological Research CentreInstitute of Plant BiologySzegedHungary
- Doctoral School of BiologyUniversity of SzegedSzegedHungary
| | - Dávid Tóth
- Laboratory for Molecular Photobioenergetics, Biological Research CentreInstitute of Plant BiologySzegedHungary
- Doctoral School of BiologyUniversity of SzegedSzegedHungary
| | - Juliane Neupert
- Max Planck Institute of Molecular Plant PhysiologyPotsdam‐GolmGermany
| | - Ralph Bock
- Max Planck Institute of Molecular Plant PhysiologyPotsdam‐GolmGermany
| | - Szilvia Z. Tóth
- Laboratory for Molecular Photobioenergetics, Biological Research CentreInstitute of Plant BiologySzegedHungary
| |
Collapse
|
4
|
Zhang Z, Tao M, Shan X, Pan Y, Sun C, Song L, Pei X, Jing Z, Dai Z. Characterization of the complete chloroplast genome of Brassica oleracea var. italica and phylogenetic relationships in Brassicaceae. PLoS One 2022; 17:e0263310. [PMID: 35202392 PMCID: PMC8870505 DOI: 10.1371/journal.pone.0263310] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/12/2021] [Accepted: 01/18/2022] [Indexed: 11/23/2022] Open
Abstract
Broccoli (Brassica oleracea var. italica) is an important B. oleracea cultivar, with high economic and agronomic value. However, comparative genome analyses are still needed to clarify variation among cultivars and phylogenetic relationships within the family Brassicaceae. Herein, the complete chloroplast (cp) genome of broccoli was generated by Illumina sequencing platform to provide basic information for genetic studies and to establish phylogenetic relationships within Brassicaceae. The whole genome was 153,364 bp, including two inverted repeat (IR) regions of 26,197 bp each, separated by a small single copy (SSC) region of 17,834 bp and a large single copy (LSC) region of 83,136 bp. The total GC content of the entire chloroplast genome accounts for 36%, while the GC content in each region of SSC,LSC, and IR accounts for 29.1%, 34.15% and 42.35%, respectively. The genome harbored 133 genes, including 88 protein-coding genes, 37 tRNAs, and 8 rRNAs, with 17 duplicates in IRs. The most abundant amino acid was leucine and the least abundant was cysteine. Codon usage analyses revealed a bias for A/T-ending codons. A total of 35 repeat sequences and 92 simple sequence repeats were detected, and the SC-IR boundary regions were variable between the seven cp genomes. A phylogenetic analysis suggested that broccoli is closely related to Brassica oleracea var. italica MH388764.1, Brassica oleracea var. italica MH388765.1, and Brassica oleracea NC_0441167.1. Our results are expected to be useful for further species identification, population genetics analyses, and biological research on broccoli.
Collapse
Affiliation(s)
- Zhenchao Zhang
- Department of Vegetables and Flowers, Zhenjiang Institute of Agricultural Sciences, Jurong, China
| | - Meiqi Tao
- Department of Vegetables and Flowers, Zhenjiang Institute of Agricultural Sciences, Jurong, China
| | - Xi Shan
- Department of Vegetables and Flowers, Zhenjiang Institute of Agricultural Sciences, Jurong, China
| | - Yongfei Pan
- Department of Vegetables and Flowers, Zhenjiang Institute of Agricultural Sciences, Jurong, China
| | - Chunqing Sun
- Department of Vegetables and Flowers, Zhenjiang Institute of Agricultural Sciences, Jurong, China
| | - Lixiao Song
- Department of Vegetables, Jiangsu Academy of Agricultural Sciences, Nanjing, China
| | - Xuli Pei
- College of Agriculture and Life Science, Kunming University, Kunming, China
| | - Zange Jing
- College of Agriculture and Life Science, Kunming University, Kunming, China
| | - Zhongliang Dai
- Department of Vegetables and Flowers, Zhenjiang Institute of Agricultural Sciences, Jurong, China
| |
Collapse
|
5
|
Zhao YH, Zhou T, Wang JX, Li Y, Fang MF, Liu JN, Li ZH. Evolution and structural variations in chloroplast tRNAs in gymnosperms. BMC Genomics 2021; 22:750. [PMID: 34663228 PMCID: PMC8524817 DOI: 10.1186/s12864-021-08058-3] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/20/2020] [Accepted: 10/06/2021] [Indexed: 11/22/2022] Open
Abstract
Background Chloroplast transfer RNAs (tRNAs) can participate in various vital processes. Gymnosperms have important ecological and economic value, and they are the dominant species in forest ecosystems in the Northern Hemisphere. However, the evolution and structural changes in chloroplast tRNAs in gymnosperms remain largely unclear. Results In this study, we determined the nucleotide evolution, phylogenetic relationships, and structural variations in 1779 chloroplast tRNAs in gymnosperms. The numbers and types of tRNA genes present in the chloroplast genomes of different gymnosperms did not differ greatly, where the average number of tRNAs was 33 and the frequencies of occurrence for various types of tRNAs were generally consistent. Nearly half of the anticodons were absent. Molecular sequence variation analysis identified the conserved secondary structures of tRNAs. About a quarter of the tRNA genes were found to contain precoded 3′ CCA tails. A few tRNAs have undergone novel structural changes that are closely related to their minimum free energy, and these structural changes affect the stability of the tRNAs. Phylogenetic analysis showed that tRNAs have evolved from multiple common ancestors. The transition rate was higher than the transversion rate in gymnosperm chloroplast tRNAs. More loss events than duplication events have occurred in gymnosperm chloroplast tRNAs during their evolutionary process. Conclusions These findings provide novel insights into the molecular evolution and biological characteristics of chloroplast tRNAs in gymnosperms. Supplementary Information The online version contains supplementary material available at 10.1186/s12864-021-08058-3.
Collapse
Affiliation(s)
- Yu-He Zhao
- Key Laboratory of Resource Biology and Biotechnology in Western China (Ministry of Education), College of Life Sciences, Northwest University, Xi'an, 710069, China
| | - Tong Zhou
- Key Laboratory of Resource Biology and Biotechnology in Western China (Ministry of Education), College of Life Sciences, Northwest University, Xi'an, 710069, China
| | - Jiu-Xia Wang
- Key Laboratory of Resource Biology and Biotechnology in Western China (Ministry of Education), College of Life Sciences, Northwest University, Xi'an, 710069, China
| | - Yan Li
- Key Laboratory of Resource Biology and Biotechnology in Western China (Ministry of Education), College of Life Sciences, Northwest University, Xi'an, 710069, China
| | - Min-Feng Fang
- Key Laboratory of Resource Biology and Biotechnology in Western China (Ministry of Education), College of Life Sciences, Northwest University, Xi'an, 710069, China
| | - Jian-Ni Liu
- State Key Laboratory of Continental Dynamics, Department of Geology, Early Life Institute, Northwest University, Xi'an, 710069, China
| | - Zhong-Hu Li
- Key Laboratory of Resource Biology and Biotechnology in Western China (Ministry of Education), College of Life Sciences, Northwest University, Xi'an, 710069, China.
| |
Collapse
|
6
|
Novel Structural Variation and Evolutionary Characteristics of Chloroplast tRNA in Gossypium Plants. Genes (Basel) 2021; 12:genes12060822. [PMID: 34071968 PMCID: PMC8228828 DOI: 10.3390/genes12060822] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/29/2021] [Revised: 05/16/2021] [Accepted: 05/24/2021] [Indexed: 11/16/2022] Open
Abstract
Cotton is one of the most important fiber and oil crops in the world. Chloroplast genomes harbor their own genetic materials and are considered to be highly conserved. Transfer RNAs (tRNAs) act as "bridges" in protein synthesis by carrying amino acids. Currently, the variation and evolutionary characteristics of tRNAs in the cotton chloroplast genome are poorly understood. Here, we analyzed the structural variation and evolution of chloroplast tRNA (cp tRNA) based on eight diploid and two allotetraploid cotton species. We also investigated the nucleotide evolution of chloroplast genomes in cotton species. We found that cp tRNAs in cotton encoded 36 or 37 tRNAs, and 28 or 29 anti-codon types with lengths ranging from 60 to 93 nucleotides. Cotton chloroplast tRNA sequences possessed specific conservation and, in particular, the Ψ-loop contained the conserved U-U-C-X3-U. The cp tRNAs of Gossypium L. contained introns, and cp tRNAIle contained the anti-codon (C-A-U), which was generally the anti-codon of tRNAMet. The transition and transversion analyses showed that cp tRNAs in cotton species were iso-acceptor specific and had undergone unequal rates of evolution. The intergenic region was more variable than coding regions, and non-synonymous mutations have been fixed in cotton cp genomes. On the other hand, phylogeny analyses indicated that cp tRNAs of cotton were derived from several inferred ancestors with greater gene duplications. This study provides new insights into the structural variation and evolution of chloroplast tRNAs in cotton plants. Our findings could contribute to understanding the detailed characteristics and evolutionary variation of the tRNA family.
Collapse
|
7
|
Zhong Q, Fu X, Zhang T, Zhou T, Yue M, Liu J, Li Z. Phylogeny and evolution of chloroplast tRNAs in Adoxaceae. Ecol Evol 2021; 11:1294-1309. [PMID: 33598131 PMCID: PMC7863635 DOI: 10.1002/ece3.7133] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/26/2020] [Revised: 11/14/2020] [Accepted: 11/23/2020] [Indexed: 12/24/2022] Open
Abstract
Chloroplasts are semiautonomous organelles found in photosynthetic plants. The major functions of chloroplasts include photosynthesis and carbon fixation, which are mainly regulated by its circular genomes. In the highly conserved chloroplast genome, the chloroplast transfer RNA genes (cp tRNA) play important roles in protein translation within chloroplasts. However, the evolution of cp tRNAs remains unclear. Thus, in the present study, we investigated the evolutionary characteristics of chloroplast tRNAs in five Adoxaceae species using 185 tRNA gene sequences. In total, 37 tRNAs encoding 28 anticodons are found in the chloroplast genome in Adoxaceae species. Some consensus sequences are found within the Ψ-stem and anticodon loop of the tRNAs. Some putative novel structures were also identified, including a new stem located in the variable region of tRNATyr in a similar manner to the anticodon stem. Furthermore, phylogenetic and evolutionary analyses indicated that synonymous tRNAs may have evolved from multiple ancestors and frequent tRNA duplications during the evolutionary process may have been primarily caused by positive selection and adaptive evolution. The transition and transversion rates are uneven among different tRNA isotypes. For all tRNAs, the transition rate is greater with a transition/transversion bias of 3.13. Phylogenetic analysis of cp tRNA suggested that the type I introns in different taxa (including eukaryote organisms and cyanobacteria) share the conserved sequences "U-U-x2-C" and "U-x-G-x2-T," thereby indicating the diverse cyanobacterial origins of organelles. This detailed study of cp tRNAs in Adoxaceae may facilitate further investigations of the evolution, phylogeny, structure, and related functions of chloroplast tRNAs.
Collapse
Affiliation(s)
- Qiu‐Yi Zhong
- Shaanxi Key Laboratory for Animal ConservationKey Laboratory of Resource Biology and Biotechnology in Western ChinaMinistry of EducationCollege of Life SciencesNorthwest UniversityXi'anChina
- Key Laboratory for Plant Diversity and Biogeography of East AsiaKunming Institute of BotanyChinese Academy of SciencesKunmingChina
| | - Xiao‐Gang Fu
- Shaanxi Key Laboratory for Animal ConservationKey Laboratory of Resource Biology and Biotechnology in Western ChinaMinistry of EducationCollege of Life SciencesNorthwest UniversityXi'anChina
| | - Ting‐Ting Zhang
- Shaanxi Key Laboratory for Animal ConservationKey Laboratory of Resource Biology and Biotechnology in Western ChinaMinistry of EducationCollege of Life SciencesNorthwest UniversityXi'anChina
| | - Tong Zhou
- Shaanxi Key Laboratory for Animal ConservationKey Laboratory of Resource Biology and Biotechnology in Western ChinaMinistry of EducationCollege of Life SciencesNorthwest UniversityXi'anChina
| | - Ming Yue
- Shaanxi Key Laboratory for Animal ConservationKey Laboratory of Resource Biology and Biotechnology in Western ChinaMinistry of EducationCollege of Life SciencesNorthwest UniversityXi'anChina
| | - Jian‐Ni Liu
- Department of GeologyState Key Laboratory of Continental DynamicsEarly Life InstituteNorthwest UniversityXi'anChina
| | - Zhong‐Hu Li
- Shaanxi Key Laboratory for Animal ConservationKey Laboratory of Resource Biology and Biotechnology in Western ChinaMinistry of EducationCollege of Life SciencesNorthwest UniversityXi'anChina
| |
Collapse
|
8
|
Huang S, Zuo T, Ni W. Important roles of glycinebetaine in stabilizing the structure and function of the photosystem II complex under abiotic stresses. PLANTA 2020; 251:36. [PMID: 31903497 DOI: 10.1007/s00425-019-03330-z] [Citation(s) in RCA: 25] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/20/2019] [Accepted: 12/14/2019] [Indexed: 05/08/2023]
Abstract
The molecular and physiological mechanisms of glycinebetaine stabilizing photosystem II complex under abiotic stresses are discussed, helping to address food shortage problems threatening the survival of growing population. In the backdrop of climate change, the frequency, dimensions and duration of extreme events have increased sharply, which may have unintended consequences for agricultural. The acclimation of plants to a constantly changing environment involves the accumulation of compatible solutes. Various compatible solutes enable plants to tolerate abiotic stresses, and glycinebetaine (GB) is one of the most-studied. The biosynthesis and accumulation of GB appear in numerous plant species, especially under environmental stresses. The exogenous application of GB and GB-accumulating transgenic plants have been proven to further promote plant development under stresses. Early research on GB focused on the maintenance of osmotic potential in plants. Subsequent experimental evidence demonstrated that it also protects proteins including the photosystem II complex (PSII) from denaturation and deactivation. As reviewed here, multiple experimental evidences have indicated considerable progress in the roles of GB in stabilizing PSII under abiotic stresses. Based on these advances, we've concluded two effects of GB on PSII: (1) it stabilizes the structure of PSII by protecting extrinsic proteins from dissociation or by promoting protein synthesize; (2) it enhances the oxygen-evolving activity of PSII or promotes the repair of the photosynthetic damage of PSII.
Collapse
Affiliation(s)
- Shan Huang
- College of Environmental and Resource Sciences, Zhejiang University, Key Laboratory of Agricultural Resource and Environment of Zhejiang Province, Hangzhou, 310058, China
| | - Ting Zuo
- College of Environmental and Resource Sciences, Zhejiang University, Key Laboratory of Agricultural Resource and Environment of Zhejiang Province, Hangzhou, 310058, China
| | - Wuzhong Ni
- College of Environmental and Resource Sciences, Zhejiang University, Key Laboratory of Agricultural Resource and Environment of Zhejiang Province, Hangzhou, 310058, China.
| |
Collapse
|
9
|
Fabiańska I, Bucher M, Häusler RE. Intracellular phosphate homeostasis - A short way from metabolism to signaling. PLANT SCIENCE : AN INTERNATIONAL JOURNAL OF EXPERIMENTAL PLANT BIOLOGY 2019; 286:57-67. [PMID: 31300142 DOI: 10.1016/j.plantsci.2019.05.018] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/28/2019] [Revised: 05/14/2019] [Accepted: 05/22/2019] [Indexed: 05/21/2023]
Abstract
Phosphorus in plant cells occurs in inorganic form as both ortho- and pyrophosphate or bound to organic compounds, like e.g., nucleotides, phosphorylated metabolites, phospholipids, phosphorylated proteins, or phytate as P storage in the vacuoles of seeds. Individual compartments of the cell are surrounded by membranes that are selective barriers to avoid uncontrolled solute exchange. A controlled exchange of phosphate or phosphorylated metabolites is accomplished by specific phosphate transporters (PHTs) and the plastidial phosphate translocator family (PTs) of the inner envelope membrane. Plastids, in particular chloroplasts, are the site of various anabolic sequences of enzyme-catalyzed reactions. Apart from their role in metabolism PHTs and PTs are presumed to be also involved in communication between organelles and plant organs. Here we will focus on the integration of phosphate transport and homeostasis in signaling processes. Recent developments in this field will be critically assessed and potential future developments discussed. In particular, the occurrence of various plastid types in one organ (i.e. the leaf) with different functions with respect to metabolism or sensing, as has been documented recently following a tissue-specific proteomics approach (Beltran et al., 2018), will shed new light on functional aspects of phosphate homeostasis.
Collapse
Affiliation(s)
- Izabela Fabiańska
- Botanical Institute, Cologne Biocenter, University of Cologne, 50674 Cologne, Germany
| | - Marcel Bucher
- Botanical Institute, Cologne Biocenter, University of Cologne, 50674 Cologne, Germany; Cluster of Excellence on Plant Sciences (CEPLAS), University of Cologne, 50674 Cologne, Germany
| | - Rainer E Häusler
- Botanical Institute, Cologne Biocenter, University of Cologne, 50674 Cologne, Germany.
| |
Collapse
|
10
|
Sun Y, Fan M, He Y. Transcriptome Analysis of Watermelon Leaves Reveals Candidate Genes Responsive to Cucumber green mottle mosaic virus Infection. Int J Mol Sci 2019; 20:ijms20030610. [PMID: 30708960 PMCID: PMC6387395 DOI: 10.3390/ijms20030610] [Citation(s) in RCA: 21] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/11/2019] [Revised: 01/24/2019] [Accepted: 01/28/2019] [Indexed: 01/02/2023] Open
Abstract
Cucumber green mottle mosaic virus (CGMMV) is a member of the genus Tobamovirus, which cause diseases in cucurbits, especially watermelon. In watermelon, symptoms develop on the whole plant, including leaves, stems, peduncles, and fruit. To better understand the molecular mechanisms of watermelon early responses to CGMMV infection, a comparative transcriptome analysis of 24 h CGMMV-infected and mock-inoculated watermelon leaves was performed. A total of 1641 differently expressed genes (DEGs) were identified, with 886 DEGs upregulated and 755 DEGs downregulated after CGMMV infection. A functional analysis indicated that the DEGs were involved in photosynthesis, plant⁻pathogen interactions, secondary metabolism, and plant hormone signal transduction. In addition, a few transcription factor families, including WRKY, MYB, HLH, bZIP and NAC, were responsive to the CGMMV-induced stress. To confirm the high-throughput sequencing results, 15 DEGs were validated by qRT-PCR analysis. The results provide insights into the identification of candidate genes or pathways involved in the responses of watermelon leaves to CGMMV infection.
Collapse
Affiliation(s)
- Yuyan Sun
- Institute of Vegetables, Zhejiang Academy of Agricultural Sciences, Hangzhou 310021, China.
- Key Laboratory of Biology and Genetic Improvement of Horticultural Crops, Ministry of Agriculture, Beijing 100081, China.
| | - Min Fan
- Institute of Vegetables, Zhejiang Academy of Agricultural Sciences, Hangzhou 310021, China.
| | - Yanjun He
- Institute of Vegetables, Zhejiang Academy of Agricultural Sciences, Hangzhou 310021, China.
| |
Collapse
|
11
|
Mohanta TK, Khan AL, Hashem A, Allah EFA, Yadav D, Al-Harrasi A. Genomic and evolutionary aspects of chloroplast tRNA in monocot plants. BMC PLANT BIOLOGY 2019; 19:39. [PMID: 30669974 PMCID: PMC6341768 DOI: 10.1186/s12870-018-1625-6] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/12/2018] [Accepted: 12/28/2018] [Indexed: 05/09/2023]
Abstract
BACKGROUND Chloroplasts are one of the most indispensable organelles that make life forms on the earth possible by their capacity to photosynthesize. These organelles possess a circular genome with a number of coding genes responsible for self-regulation. tRNAs are an important evolutionary-conserved gene family that are responsible for protein translation. However, within the chloroplast genome, tRNA machinery are poorly understood. RESULTS In the present study, the chloroplast genome of six monocot plants, Oryza nivara (NC_005973), Oryza sativa (NC_001320), Sachharum officinarum (NC_006084), Sorghum bicolor (NC_008602), Triticum aestivum (NC_002762), and Zea mays (NC_001666) were downloaded and analyzed to identify tRNA sequences. Further analysis of the tRNA sequences in the chloroplast genomes of the monocot plants resulted in the identification of several novel features. The length of tRNAs in the chloroplast genome of the monocot plants ranged from 59 to 155 nucleotides. Pair-wise sequence alignment revealed the presence of a conserved A-C-x-U-A-x-U-A-x-U-x5-U-A-A nucleotide consensus sequence. In addition, the tRNAs in chloroplast genomes of the monocot plants also contain 21-28 anti-codons against 61 sense codons in the genome. They also contain a group I intron and a C-A-U anti-codon for tRNAIle, which is a common anti-codon of tRNAMet. Evolutionary analysis indicates that tRNAs in the chloroplast genome have evolved from multiple common ancestors, and tRNAMet appears to be the ancestral tRNA that underwent duplication and diversification to give rise to other tRNAs. CONCLUSION The results obtained from the study of chloroplast tRNA will greatly help to increase our understanding of tRNA biology at a new level. Functional studies of the reported novel aspects of the chloroplast tRNA of the monocot plants will greatly help to decipher their roles in diverse cellular processes.
Collapse
Affiliation(s)
- Tapan Kumar Mohanta
- Natural and Medical Sciences Research Center, University of Nizwa, 616 Nizwa, Oman
| | - Abdul Latif Khan
- Natural and Medical Sciences Research Center, University of Nizwa, 616 Nizwa, Oman
| | - Abeer Hashem
- Botany and Microbiology Department, College of Science, King Saud University, Riyadh, 11451 Saudi Arabia
- Mycology and Plant Disease Survey Department, Plant Pathology Research Institute, Agriculture Research Center, Giza, Egypt
| | - Elsayed Fathi Abd_ Allah
- Plant Production Department, College of Food and Agriculture Science, King Saud University, Riyadh, 11451 Saudi Arabia
| | - Dhananjay Yadav
- Department of Medical Biotechnology, Yeungnam University, Gyeongsan, 38541 Republic of Korea
| | - Ahmed Al-Harrasi
- Natural and Medical Sciences Research Center, University of Nizwa, 616 Nizwa, Oman
| |
Collapse
|
12
|
Kojima S, Iwamoto M, Oiki S, Tochigi S, Takahashi H. Thylakoid membranes contain a non-selective channel permeable to small organic molecules. J Biol Chem 2018; 293:7777-7785. [PMID: 29602906 DOI: 10.1074/jbc.ra118.002367] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/09/2018] [Revised: 03/20/2018] [Indexed: 11/06/2022] Open
Abstract
The thylakoid lumen is a membrane-enclosed aqueous compartment. Growing evidence indicates that the thylakoid lumen is not only a sink for protons and inorganic ions translocated during photosynthetic reactions but also a place for metabolic activities, e.g. proteolysis of photodamaged proteins, to sustain efficient photosynthesis. However, the mechanism whereby organic molecules move across the thylakoid membranes to sustain these lumenal activities is not well understood. In a recent study of Cyanophora paradoxa chloroplasts (muroplasts), we fortuitously detected a conspicuous diffusion channel activity in the thylakoid membranes. Here, using proteoliposomes reconstituted with the thylakoid membranes from muroplasts and from two other phylogenetically distinct organisms, cyanobacterium Synechocystis sp. PCC 6803 and spinach, we demonstrated the existence of nonselective channels large enough for enabling permeation of small organic compounds (e.g. carbohydrates and amino acids with Mr < 1500) in the thylakoid membranes. Moreover, we purified, identified, and characterized a muroplast channel named here CpTPOR. Osmotic swelling experiments revealed that CpTPOR forms a nonselective pore with an estimated radius of ∼1.3 nm. A lipid bilayer experiment showed variable-conductance channel activity with a typical single-channel conductance of 1.8 nS in 1 m KCl with infrequent closing transitions. The CpTPOR amino acid sequence was moderately similar to that of a voltage-dependent anion-selective channel of the mitochondrial outer membrane, although CpTPOR exhibited no obvious selectivity for anions and no voltage-dependent gating. We propose that transmembrane diffusion pathways are ubiquitous in the thylakoid membranes, presumably enabling rapid transfer of various metabolites between the lumen and stroma.
Collapse
Affiliation(s)
- Seiji Kojima
- From the Frontier Research Institute for Interdisciplinary Sciences, Tohoku University, Sendai 980-8577, Japan, .,the Graduate School of Life Sciences, Tohoku University, Sendai 980-8577, Japan, and
| | - Masayuki Iwamoto
- the Department of Molecular Physiology and Biophysics, Faculty of Medical Sciences, University of Fukui, Fukui 910-1193, Japan
| | - Shigetoshi Oiki
- the Department of Molecular Physiology and Biophysics, Faculty of Medical Sciences, University of Fukui, Fukui 910-1193, Japan
| | - Saeko Tochigi
- From the Frontier Research Institute for Interdisciplinary Sciences, Tohoku University, Sendai 980-8577, Japan.,the Graduate School of Life Sciences, Tohoku University, Sendai 980-8577, Japan, and
| | - Hideyuki Takahashi
- the Graduate School of Life Sciences, Tohoku University, Sendai 980-8577, Japan, and
| |
Collapse
|
13
|
Murata N, Nishiyama Y. ATP is a driving force in the repair of photosystem II during photoinhibition. PLANT, CELL & ENVIRONMENT 2018; 41:285-299. [PMID: 29210214 DOI: 10.1111/pce.13108] [Citation(s) in RCA: 26] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/16/2017] [Revised: 11/21/2017] [Accepted: 11/22/2017] [Indexed: 05/15/2023]
Abstract
Repair of photosystem II (PSII) during photoinhibition involves replacement of photodamaged D1 protein by newly synthesized D1 protein. In this review, we summarize evidence for the indispensability of ATP in the degradation and synthesis of D1 during the repair of PSII. Synthesis of one molecule of the D1 protein consumes more than 1,300 molecules of ATP equivalents. The degradation of photodamaged D1 by FtsH protease also consumes approximately 240 molecules of ATP. In addition, ATP is required for several other aspects of the repair of PSII, such as transcription of psbA genes. These requirements for ATP during the repair of PSII have been demonstrated by experiments showing that the synthesis of D1 and the repair of PSII are interrupted by inhibitors of ATP synthase and uncouplers of ATP synthesis, as well as by mutation of components of ATP synthase. We discuss the contribution of cyclic electron transport around photosystem I to the repair of PSII. Furthermore, we introduce new terms relevant to the regulation of the PSII repair, namely, "ATP-dependent regulation" and "redox-dependent regulation," and we discuss the possible contribution of the ATP-dependent regulation of PSII repair under environmental stress.
Collapse
Affiliation(s)
- Norio Murata
- National Institute for Basic Biology, Okazaki, 444-8585, Japan
| | - Yoshitaka Nishiyama
- Department of Biochemistry and Molecular Biology and Institute for Environmental Science and Technology, Saitama University, 255 Shimo-Okubo, Sakura-ku, Saitama, 338-8570, Japan
| |
Collapse
|
14
|
Luzarowski M, Kosmacz M, Sokolowska E, Jasińska W, Willmitzer L, Veyel D, Skirycz A. Affinity purification with metabolomic and proteomic analysis unravels diverse roles of nucleoside diphosphate kinases. JOURNAL OF EXPERIMENTAL BOTANY 2017; 68:3487-3499. [PMID: 28586477 PMCID: PMC5853561 DOI: 10.1093/jxb/erx183] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/03/2017] [Accepted: 05/04/2017] [Indexed: 05/22/2023]
Abstract
Interactions between metabolites and proteins play an integral role in all cellular functions. Here we describe an affinity purification (AP) approach in combination with LC/MS-based metabolomics and proteomics that allows, to our knowledge for the first time, analysis of protein-metabolite and protein-protein interactions simultaneously in plant systems. More specifically, we examined protein and small-molecule partners of the three (of five) nucleoside diphosphate kinases present in the Arabidopsis genome (NDPK1-NDPK3). The bona fide role of NDPKs is the exchange of terminal phosphate groups between nucleoside diphosphates (NDPs) and triphosphates (NTPs). However, other functions have been reported, which probably depend on both the proteins and small molecules specifically interacting with the NDPK. Using our approach we identified 23, 17, and 8 novel protein partners of NDPK1, NDPK2, and NDPK3, respectively, with nucleotide-dependent proteins such as actin and adenosine kinase 2 being enriched. Particularly interesting, however, was the co-elution of glutathione S-transferases (GSTs) and reduced glutathione (GSH) with the affinity-purified NDPK1 complexes. Following up on this finding, we could demonstrate that NDPK1 undergoes glutathionylation, opening a new paradigm of NDPK regulation in plants. The described results extend our knowledge of NDPKs, the key enzymes regulating NDP/NTP homeostasis.
Collapse
Affiliation(s)
- Marcin Luzarowski
- Max Planck Institute of Molecular Plant Physiology, Am Mühlenberg, Potsdam-Golm, Germany
| | - Monika Kosmacz
- Max Planck Institute of Molecular Plant Physiology, Am Mühlenberg, Potsdam-Golm, Germany
| | - Ewelina Sokolowska
- Max Planck Institute of Molecular Plant Physiology, Am Mühlenberg, Potsdam-Golm, Germany
| | - Weronika Jasińska
- Max Planck Institute of Molecular Plant Physiology, Am Mühlenberg, Potsdam-Golm, Germany
| | - Lothar Willmitzer
- Max Planck Institute of Molecular Plant Physiology, Am Mühlenberg, Potsdam-Golm, Germany
| | - Daniel Veyel
- Max Planck Institute of Molecular Plant Physiology, Am Mühlenberg, Potsdam-Golm, Germany
| | - Aleksandra Skirycz
- Max Planck Institute of Molecular Plant Physiology, Am Mühlenberg, Potsdam-Golm, Germany
- Correspondence:
| |
Collapse
|
15
|
Luzarowski M, Kosmacz M, Sokolowska E, Jasinska W, Willmitzer L, Veyel D, Skirycz A. Affinity purification with metabolomic and proteomic analysis unravels diverse roles of nucleoside diphosphate kinases. JOURNAL OF EXPERIMENTAL BOTANY 2017. [PMID: 28586477 DOI: 10.93/jxb/erx183] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Subscribe] [Scholar Register] [Indexed: 05/06/2023]
Abstract
Interactions between metabolites and proteins play an integral role in all cellular functions. Here we describe an affinity purification (AP) approach in combination with LC/MS-based metabolomics and proteomics that allows, to our knowledge for the first time, analysis of protein-metabolite and protein-protein interactions simultaneously in plant systems. More specifically, we examined protein and small-molecule partners of the three (of five) nucleoside diphosphate kinases present in the Arabidopsis genome (NDPK1-NDPK3). The bona fide role of NDPKs is the exchange of terminal phosphate groups between nucleoside diphosphates (NDPs) and triphosphates (NTPs). However, other functions have been reported, which probably depend on both the proteins and small molecules specifically interacting with the NDPK. Using our approach we identified 23, 17, and 8 novel protein partners of NDPK1, NDPK2, and NDPK3, respectively, with nucleotide-dependent proteins such as actin and adenosine kinase 2 being enriched. Particularly interesting, however, was the co-elution of glutathione S-transferases (GSTs) and reduced glutathione (GSH) with the affinity-purified NDPK1 complexes. Following up on this finding, we could demonstrate that NDPK1 undergoes glutathionylation, opening a new paradigm of NDPK regulation in plants. The described results extend our knowledge of NDPKs, the key enzymes regulating NDP/NTP homeostasis.
Collapse
Affiliation(s)
- Marcin Luzarowski
- Max Planck Institute of Molecular Plant Physiology, Am Mühlenberg 1, D-14476 Potsdam-Golm, Germany
| | - Monika Kosmacz
- Max Planck Institute of Molecular Plant Physiology, Am Mühlenberg 1, D-14476 Potsdam-Golm, Germany
| | - Ewelina Sokolowska
- Max Planck Institute of Molecular Plant Physiology, Am Mühlenberg 1, D-14476 Potsdam-Golm, Germany
| | - Weronika Jasinska
- Max Planck Institute of Molecular Plant Physiology, Am Mühlenberg 1, D-14476 Potsdam-Golm, Germany
| | - Lothar Willmitzer
- Max Planck Institute of Molecular Plant Physiology, Am Mühlenberg 1, D-14476 Potsdam-Golm, Germany
| | - Daniel Veyel
- Max Planck Institute of Molecular Plant Physiology, Am Mühlenberg 1, D-14476 Potsdam-Golm, Germany
| | - Aleksandra Skirycz
- Max Planck Institute of Molecular Plant Physiology, Am Mühlenberg 1, D-14476 Potsdam-Golm, Germany
| |
Collapse
|
16
|
Armbruster U, Leonelli L, Correa Galvis V, Strand D, Quinn EH, Jonikas MC, Niyogi KK. Regulation and Levels of the Thylakoid K+/H+ Antiporter KEA3 Shape the Dynamic Response of Photosynthesis in Fluctuating Light. PLANT & CELL PHYSIOLOGY 2016; 57:1557-1567. [PMID: 27335350 PMCID: PMC4937787 DOI: 10.1093/pcp/pcw085] [Citation(s) in RCA: 28] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/18/2015] [Accepted: 04/24/2016] [Indexed: 05/22/2023]
Abstract
Crop canopies create environments of highly fluctuating light intensities. In such environments, photoprotective mechanisms and their relaxation kinetics have been hypothesized to limit photosynthetic efficiency and therefore crop yield potential. Here, we show that overexpression of the Arabidopsis thylakoid K+/H+ antiporter KEA3 accelerates the relaxation of photoprotective energy-dependent quenching after transitions from high to low light in Arabidopsis and tobacco. This, in turn, enhances PSII quantum efficiency in both organisms, supporting that in wild-type plants, residual light energy quenching following a high to low light transition represents a limitation to photosynthetic efficiency in fluctuating light. This finding underscores the potential of accelerating quenching relaxation as a building block for improving photosynthetic efficiency in the field. Additionally, by overexpressing natural KEA3 variants with modification to the C-terminus, we show that KEA3 activity is regulated by a mechanism involving its lumen-localized C-terminus, which lowers KEA3 activity in high light. This regulatory mechanism fine-tunes the balance between photoprotective energy dissipation in high light and maximum quantum yield in low light, likely to be critical for efficient photosynthesis in fluctuating light conditions.
Collapse
Affiliation(s)
- Ute Armbruster
- Howard Hughes Medical Institute, Department of Plant and Microbial Biology, University of California, Berkeley, CA 94720, USA
- Carnegie Institution for Science, Department of Plant Biology, Stanford, CA 94305, USA
- Max Planck Institute of Molecular Plant Physiology, Am Mühlenberg 1, D-14476 Potsdam, Germany
| | - Lauriebeth Leonelli
- Howard Hughes Medical Institute, Department of Plant and Microbial Biology, University of California, Berkeley, CA 94720, USA
| | - Viviana Correa Galvis
- Max Planck Institute of Molecular Plant Physiology, Am Mühlenberg 1, D-14476 Potsdam, Germany
| | - Deserah Strand
- Max Planck Institute of Molecular Plant Physiology, Am Mühlenberg 1, D-14476 Potsdam, Germany
| | - Erica H Quinn
- Howard Hughes Medical Institute, Department of Plant and Microbial Biology, University of California, Berkeley, CA 94720, USA
| | - Martin C Jonikas
- Carnegie Institution for Science, Department of Plant Biology, Stanford, CA 94305, USA
| | - Krishna K Niyogi
- Howard Hughes Medical Institute, Department of Plant and Microbial Biology, University of California, Berkeley, CA 94720, USA
- Physical Biosciences Division, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA
| |
Collapse
|
17
|
Kang ZH, Wang GX. Redox regulation in the thylakoid lumen. JOURNAL OF PLANT PHYSIOLOGY 2016; 192:28-37. [PMID: 26812087 DOI: 10.1016/j.jplph.2015.12.012] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/01/2015] [Revised: 12/04/2015] [Accepted: 12/04/2015] [Indexed: 06/05/2023]
Abstract
Higher plants need to balance the efficiency of light energy absorption and dissipative photo-protection when exposed to fluctuations in light quantity and quality. This aim is partially realized through redox regulation within the chloroplast, which occurs in all chloroplast compartments except the envelope intermembrane space. In contrast to the chloroplast stroma, less attention has been paid to the thylakoid lumen, an inner, continuous space enclosed by the thylakoid membrane in which redox regulation is also essential for photosystem biogenesis and function. This sub-organelle compartment contains at least 80 lumenal proteins, more than 30 of which are known to contain disulfide bonds. Thioredoxins (Trx) in the chloroplast stroma are photo-reduced in the light, transferring reducing power to the proteins in the thylakoid membrane and ultimately the lumen through a trans-thylakoid membrane-reduced, equivalent pathway. The discovery of lumenal thiol oxidoreductase highlights the importance of the redox regulation network in the lumen for controlling disulfide bond formation, which is responsible for protein activity and folding and even plays a role in photo-protection. In addition, many lumenal members involved in photosystem assembly and non-photochemical quenching are likely required for reduction and/or oxidation to maintain their proper efficiency upon changes in light intensity. In light of recent findings, this review summarizes the multiple redox processes that occur in the thylakoid lumen in great detail, highlighting the essential auxiliary roles of lumenal proteins under fluctuating light conditions.
Collapse
Affiliation(s)
- Zhen-Hui Kang
- Key Laboratory of Biorheological Science and Technology (Chongqing University), Ministry of Education, Bioengineering College of Chongqing University, Chongqing 400030, China
| | - Gui-Xue Wang
- Key Laboratory of Biorheological Science and Technology (Chongqing University), Ministry of Education, Bioengineering College of Chongqing University, Chongqing 400030, China.
| |
Collapse
|
18
|
Klasek L, Inoue K. Dual Protein Localization to the Envelope and Thylakoid Membranes Within the Chloroplast. INTERNATIONAL REVIEW OF CELL AND MOLECULAR BIOLOGY 2016; 323:231-63. [PMID: 26944623 DOI: 10.1016/bs.ircmb.2015.12.008] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Key Words] [Subscribe] [Scholar Register] [Indexed: 01/13/2023]
Abstract
The chloroplast houses various metabolic processes essential for plant viability. This organelle originated from an ancestral cyanobacterium via endosymbiosis and maintains the three membranes of its progenitor. Among them, the outer envelope membrane functions mainly in communication with cytoplasmic components while the inner envelope membrane houses selective transport of various metabolites and the biosynthesis of several compounds, including membrane lipids. These two envelope membranes also play essential roles in import of nuclear-encoded proteins and in organelle division. The third membrane, the internal membrane system known as the thylakoid, houses photosynthetic electron transport and chemiosmotic phosphorylation. The inner envelope and thylakoid membranes share similar lipid composition. Specific targeting pathways determine their defined proteomes and, thus, their distinct functions. Nonetheless, several proteins have been shown to exist in both the envelope and thylakoid membranes. These proteins include those that play roles in protein transport, tetrapyrrole biosynthesis, membrane dynamics, or transport of nucleotides or inorganic phosphate. In this review, we summarize the current knowledge about proteins localized to both the envelope and thylakoid membranes in the chloroplast, discussing their roles in each membrane and potential mechanisms of their dual localization. Addressing the unanswered questions about these dual-localized proteins should help advance our understanding of chloroplast development, protein transport, and metabolic regulation.
Collapse
Affiliation(s)
- Laura Klasek
- Department of Plant Sciences, University of California at Davis, Davis, CA, United States of America
| | - Kentaro Inoue
- Department of Plant Sciences, University of California at Davis, Davis, CA, United States of America.
| |
Collapse
|
19
|
Pigolev AV, Klimov VV. The green alga Chlamydomonas reinhardtii as a tool for in vivo study of site-directed mutations in PsbO protein of photosystem II. BIOCHEMISTRY (MOSCOW) 2015; 80:662-73. [DOI: 10.1134/s0006297915060036] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
|
20
|
Duchoslav M, Fischer L. Parallel subfunctionalisation of PsbO protein isoforms in angiosperms revealed by phylogenetic analysis and mapping of sequence variability onto protein structure. BMC PLANT BIOLOGY 2015; 15:133. [PMID: 26051374 PMCID: PMC4459440 DOI: 10.1186/s12870-015-0523-4] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/12/2015] [Accepted: 05/11/2015] [Indexed: 05/09/2023]
Abstract
BACKGROUND PsbO, the manganese-stabilising protein, is an indispensable extrinsic subunit of photosystem II. It plays a crucial role in the stabilisation of the water-splitting Mn4CaO5 cluster, which catalyses the oxidation of water to molecular oxygen by using light energy. PsbO was also demonstrated to have a weak GTPase activity that could be involved in regulation of D1 protein turnover. Our analysis of psbO sequences showed that many angiosperm species express two psbO paralogs, but the pairs of isoforms in one species were not orthologous to pairs of isoforms in distant species. RESULTS Phylogenetic analysis of 91 psbO sequences from 49 land plant species revealed that psbO duplication occurred many times independently, generally at the roots of modern angiosperm families. In spite of this, the level of isoform divergence was similar in different species. Moreover, mapping of the differences on the protein tertiary structure showed that the isoforms in individual species differ from each other on similar positions, mostly on the luminally exposed end of the β-barrel structure. Comparison of these differences with the location of differences between PsbOs from diverse angiosperm families indicated various selection pressures in PsbO evolution and potential interaction surfaces on the PsbO structure. CONCLUSIONS The analyses suggest that similar subfunctionalisation of PsbO isoforms occurred parallelly in various lineages. We speculate that the presence of two PsbO isoforms helps the plants to finely adjust the photosynthetic apparatus in response to variable conditions. This might be mediated by diverse GTPase activity, since the isoform differences predominate near the predicted GTP-binding site.
Collapse
Affiliation(s)
- Miloš Duchoslav
- Department of Experimental Plant Biology, Faculty of Science, Charles University in Prague, Viničná 5,, 128 44 Praha 2, Czech Republic.
| | - Lukáš Fischer
- Department of Experimental Plant Biology, Faculty of Science, Charles University in Prague, Viničná 5,, 128 44 Praha 2, Czech Republic.
| |
Collapse
|
21
|
Fristedt R, Herdean A, Blaby-Haas CE, Mamedov F, Merchant SS, Last RL, Lundin B. PHOTOSYSTEM II PROTEIN33, a protein conserved in the plastid lineage, is associated with the chloroplast thylakoid membrane and provides stability to photosystem II supercomplexes in Arabidopsis. PLANT PHYSIOLOGY 2015; 167:481-92. [PMID: 25511433 PMCID: PMC4326745 DOI: 10.1104/pp.114.253336] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/03/2023]
Abstract
Photosystem II (PSII) is a multiprotein complex that catalyzes the light-driven water-splitting reactions of oxygenic photosynthesis. Light absorption by PSII leads to the production of excited states and reactive oxygen species that can cause damage to this complex. Here, we describe Arabidopsis (Arabidopsis thaliana) At1g71500, which encodes a previously uncharacterized protein that is a PSII auxiliary core protein and hence is named PHOTOSYSTEM II PROTEIN33 (PSB33). We present evidence that PSB33 functions in the maintenance of PSII-light-harvesting complex II (LHCII) supercomplex organization. PSB33 encodes a protein with a chloroplast transit peptide and one transmembrane segment. In silico analysis of PSB33 revealed a light-harvesting complex-binding motif within the transmembrane segment and a large surface-exposed head domain. Biochemical analysis of PSII complexes further indicates that PSB33 is an integral membrane protein located in the vicinity of LHCII and the PSII CP43 reaction center protein. Phenotypic characterization of mutants lacking PSB33 revealed reduced amounts of PSII-LHCII supercomplexes, very low state transition, and a lower capacity for nonphotochemical quenching, leading to increased photosensitivity in the mutant plants under light stress. Taken together, these results suggest a role for PSB33 in regulating and optimizing photosynthesis in response to changing light levels.
Collapse
Affiliation(s)
- Rikard Fristedt
- Department of Chemistry and Biochemistry (R.F., C.E.B.-H., S.S.M.) and Institute for Genomics and Proteomics (S.S.M.), University of California, Los Angeles, California 90095;Department of Biological and Environmental Sciences, University of Gothenburg, 405 30 Gothenburg, Sweden (A.H., B.L.);Department of Chemistry, Ångström Laboratory, Uppsala University, 751 20 Uppsala, Sweden (F.M.); andDepartment of Biochemistry and Molecular Biology and Department of Plant Biology, Michigan State University, East Lansing, Michigan 48824 (R.L.L., B.L.)
| | - Andrei Herdean
- Department of Chemistry and Biochemistry (R.F., C.E.B.-H., S.S.M.) and Institute for Genomics and Proteomics (S.S.M.), University of California, Los Angeles, California 90095;Department of Biological and Environmental Sciences, University of Gothenburg, 405 30 Gothenburg, Sweden (A.H., B.L.);Department of Chemistry, Ångström Laboratory, Uppsala University, 751 20 Uppsala, Sweden (F.M.); andDepartment of Biochemistry and Molecular Biology and Department of Plant Biology, Michigan State University, East Lansing, Michigan 48824 (R.L.L., B.L.)
| | - Crysten E Blaby-Haas
- Department of Chemistry and Biochemistry (R.F., C.E.B.-H., S.S.M.) and Institute for Genomics and Proteomics (S.S.M.), University of California, Los Angeles, California 90095;Department of Biological and Environmental Sciences, University of Gothenburg, 405 30 Gothenburg, Sweden (A.H., B.L.);Department of Chemistry, Ångström Laboratory, Uppsala University, 751 20 Uppsala, Sweden (F.M.); andDepartment of Biochemistry and Molecular Biology and Department of Plant Biology, Michigan State University, East Lansing, Michigan 48824 (R.L.L., B.L.)
| | - Fikret Mamedov
- Department of Chemistry and Biochemistry (R.F., C.E.B.-H., S.S.M.) and Institute for Genomics and Proteomics (S.S.M.), University of California, Los Angeles, California 90095;Department of Biological and Environmental Sciences, University of Gothenburg, 405 30 Gothenburg, Sweden (A.H., B.L.);Department of Chemistry, Ångström Laboratory, Uppsala University, 751 20 Uppsala, Sweden (F.M.); andDepartment of Biochemistry and Molecular Biology and Department of Plant Biology, Michigan State University, East Lansing, Michigan 48824 (R.L.L., B.L.)
| | - Sabeeha S Merchant
- Department of Chemistry and Biochemistry (R.F., C.E.B.-H., S.S.M.) and Institute for Genomics and Proteomics (S.S.M.), University of California, Los Angeles, California 90095;Department of Biological and Environmental Sciences, University of Gothenburg, 405 30 Gothenburg, Sweden (A.H., B.L.);Department of Chemistry, Ångström Laboratory, Uppsala University, 751 20 Uppsala, Sweden (F.M.); andDepartment of Biochemistry and Molecular Biology and Department of Plant Biology, Michigan State University, East Lansing, Michigan 48824 (R.L.L., B.L.)
| | - Robert L Last
- Department of Chemistry and Biochemistry (R.F., C.E.B.-H., S.S.M.) and Institute for Genomics and Proteomics (S.S.M.), University of California, Los Angeles, California 90095;Department of Biological and Environmental Sciences, University of Gothenburg, 405 30 Gothenburg, Sweden (A.H., B.L.);Department of Chemistry, Ångström Laboratory, Uppsala University, 751 20 Uppsala, Sweden (F.M.); andDepartment of Biochemistry and Molecular Biology and Department of Plant Biology, Michigan State University, East Lansing, Michigan 48824 (R.L.L., B.L.)
| | - Björn Lundin
- Department of Chemistry and Biochemistry (R.F., C.E.B.-H., S.S.M.) and Institute for Genomics and Proteomics (S.S.M.), University of California, Los Angeles, California 90095;Department of Biological and Environmental Sciences, University of Gothenburg, 405 30 Gothenburg, Sweden (A.H., B.L.);Department of Chemistry, Ångström Laboratory, Uppsala University, 751 20 Uppsala, Sweden (F.M.); andDepartment of Biochemistry and Molecular Biology and Department of Plant Biology, Michigan State University, East Lansing, Michigan 48824 (R.L.L., B.L.)
| |
Collapse
|
22
|
Wang Y, Zeng L, Xing D. ROS-mediated enhanced transcription of CYP38 promotes the plant tolerance to high light stress by suppressing GTPase activation of PsbO2. FRONTIERS IN PLANT SCIENCE 2015; 6:777. [PMID: 26483802 PMCID: PMC4586435 DOI: 10.3389/fpls.2015.00777] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/15/2015] [Accepted: 09/10/2015] [Indexed: 05/20/2023]
Abstract
As a member of the Immunophilin family, cyclophilin38 (CYP38) is discovered to be localized in the thylakoid lumen, and is reported to be a participant in the function regulation of thylakoid membrane protein. However, the molecule mechanisms remain unclear. We found that, CYP38 plays an important role in the process of regulating and protecting the plant to resist high light (HL) stress. Under HL condition, the gene expression of CYP38 is enhanced, and if CYP38 gene is deficient, photochemistry efficiency, and chlorophyll content falls distinctly, and excessive reactive oxygen species synthesis occurs in the chloroplast. Western blot results showed that the D1 degradation rate of cyp38 mutant plants is faster than that of wide type plants. Interestingly, both gene expression and activity of PsbO2 were drastically enhanced in cyp38 mutant plants and less changed when the deleted gene of CYP38 was restored under HL treatment. This indicates that CYP38 may impose a negative regulation effect on PsbO2, which exerts a positive regulation effect in facilitating the dephosphorylation and subsequent degradation of D1. It is also found that, under HL condition, the cytoplasmic calcium ([Ca(2+)]cyt) concentration and the gene expression level of calmodulin 3 (CaM3) arose markedly, which occurs upstream of CYP38 gene expression. In conclusion, our results indicate that CYP38 plays an important role in plant strengthening HL resistibility, which provides a new insight in the research of mechanisms of CYP38 protein in plants.
Collapse
Affiliation(s)
| | | | - Da Xing
- *Correspondence: Da Xing, MOE Key Laboratory of Laser Life Science and Institute of Laser Life Science, College of Biophotonics, South China Normal University, Shipai, Tianhe District, Guangzhou 510631, China,
| |
Collapse
|
23
|
Dorion S, Rivoal J. Clues to the functions of plant NDPK isoforms. Naunyn Schmiedebergs Arch Pharmacol 2014; 388:119-32. [PMID: 24964975 DOI: 10.1007/s00210-014-1009-x] [Citation(s) in RCA: 23] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/26/2014] [Accepted: 06/15/2014] [Indexed: 12/20/2022]
Abstract
This review describes the five nucleoside diphosphate kinase (NDPK) genes found in both model plants Arabidopsis thaliana (thale cress) and Oryza sativa L. (rice). Phylogenetic and sequence analyses of these genes allow the definition of four types of NDPK isoforms with different predicted subcellular localization. These predictions are supported by experimental evidence for most NDPK types. Data mining also provides evidence for the existence of a novel NDPK type putatively localized in the endoplasmic reticulum. Phylogenic analyses indicate that plant types I, II, and III belong to the previously identified Nme group I whereas type IV belongs to Nme group II. Additional analysis of the literature offers clues supporting the idea that the various plant NDPK types have different functions. Hence, cytosolic type I NDPKs are involved in metabolism, growth, and stress responses. Type II NDPKs are localized in the chloroplast and mainly involved in photosynthetic development and oxidative stress management. Type III NDPKs have dual targeting to the mitochondria and the chloroplast and are principally involved in energy metabolism. The subcellular localization and precise function of the novel type IV NDPKs, however, will require further investigations.
Collapse
Affiliation(s)
- Sonia Dorion
- IRBV, Université de Montréal, 4101 rue Sherbrooke est, Montréal, QC, H1X 2B2, Canada
| | | |
Collapse
|
24
|
Fristedt R, Scharff LB, Clarke CA, Wang Q, Lin C, Merchant SS, Bock R. RBF1, a plant homolog of the bacterial ribosome-binding factor RbfA, acts in processing of the chloroplast 16S ribosomal RNA. PLANT PHYSIOLOGY 2014; 164:201-15. [PMID: 24214533 PMCID: PMC3875801 DOI: 10.1104/pp.113.228338] [Citation(s) in RCA: 24] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/11/2013] [Accepted: 11/07/2013] [Indexed: 05/20/2023]
Abstract
Plastids (chloroplasts) possess 70S ribosomes that are very similar in structure and function to the ribosomes of their bacterial ancestors. While most components of the bacterial ribosome (ribosomal RNAs [rRNAs] and ribosomal proteins) are well conserved in the plastid ribosome, little is known about the factors mediating the biogenesis of plastid ribosomes. Here, we have investigated a putative homolog of the bacterial RbfA (for ribosome-binding factor A) protein that was identified as a cold-shock protein and an auxiliary factor acting in the 5' maturation of the 16S rRNA. The unicellular green alga Chlamydomonas reinhardtii and the vascular plant Arabidopsis (Arabidopsis thaliana) both encode a single RbfA-like protein in their nuclear genomes. By generating specific antibodies against this protein, we show that the plant RbfA-like protein functions exclusively in the plastid, where it is associated with thylakoid membranes. Analysis of mutants for the corresponding gene (termed RBF1) reveals that the gene function is essential for photoautotrophic growth. Weak mutant alleles display reduced levels of plastid ribosomes, a specific depletion in 30S ribosomal subunits, and reduced activity of plastid protein biosynthesis. Our data suggest that, while the function in ribosome maturation and 16S rRNA 5' end processing is conserved, the RBF1 protein has assumed an additional role in 3' end processing. Together with the apparent absence of a homologous protein from plant mitochondria, our findings illustrate that the assembly process of the 70S ribosome is not strictly conserved and has undergone some modifications during organelle evolution.
Collapse
|
25
|
Järvi S, Gollan PJ, Aro EM. Understanding the roles of the thylakoid lumen in photosynthesis regulation. FRONTIERS IN PLANT SCIENCE 2013; 4:434. [PMID: 24198822 PMCID: PMC3813922 DOI: 10.3389/fpls.2013.00434] [Citation(s) in RCA: 35] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/17/2013] [Accepted: 10/12/2013] [Indexed: 05/20/2023]
Abstract
It has been known for a long time that the thylakoid lumen provides the environment for oxygen evolution, plastocyanin-mediated electron transfer, and photoprotection. More recently lumenal proteins have been revealed to play roles in numerous processes, most often linked with regulating thylakoid biogenesis and the activity and turnover of photosynthetic protein complexes, especially the photosystem II and NAD(P)H dehydrogenase-like complexes. Still, the functions of the majority of lumenal proteins in Arabidopsis thaliana are unknown. Interestingly, while the thylakoid lumen proteome of at least 80 proteins contains several large protein families, individual members of many protein families have highly divergent roles. This is indicative of evolutionary pressure leading to neofunctionalization of lumenal proteins, emphasizing the important role of the thylakoid lumen for photosynthetic electron transfer and ultimately for plant fitness. Furthermore, the involvement of anterograde and retrograde signaling networks that regulate the expression and activity of lumen proteins is increasingly pertinent. Recent studies have also highlighted the importance of thiol/disulfide modulation in controlling the functions of many lumenal proteins and photosynthetic regulation pathways.
Collapse
Affiliation(s)
| | | | - Eva-Mari Aro
- *Correspondence: Eva-Mari Aro, Molecular Plant Biology, Department of Biochemistry, University of Turku, FIN-20014 Turku, Finland e-mail:
| |
Collapse
|
26
|
Bricker TM, Roose JL, Zhang P, Frankel LK. The PsbP family of proteins. PHOTOSYNTHESIS RESEARCH 2013; 116:235-50. [PMID: 23564479 DOI: 10.1007/s11120-013-9820-7] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/31/2013] [Accepted: 03/24/2013] [Indexed: 05/06/2023]
Abstract
The PsbP family of proteins consists of 11 evolutionarily related thylakoid lumenal components. These include the archetypal PsbP protein, which is an extrinsic subunit of eukaryotic photosystem II, three PsbP-like proteins (CyanoP of the prokaryotic cyanobacteria and green oxyphotobacteria, and the PPL1 and PPL2 proteins found in many eukaryotes), and seven PsbP-domain (PPD) proteins (PPD1-PPD7, most of which are found in the green plant lineage). All of these possess significant sequence and structural homologies while having very diverse functions. While the PsbP protein has been extensively studied and plays a functional role in the optimization of photosynthetic oxygen evolution at physiological calcium and chloride concentrations, the molecular functions of the other family members are poorly understood. Recent investigations have begun to illuminate the roles that these proteins play in membrane protein complex assembly/stability, hormone biosynthesis, and other metabolic processes. In this review we have examined this functional information within the context of recent advances examining the structure of these components.
Collapse
Affiliation(s)
- Terry M Bricker
- Division of Biochemistry and Molecular Biology, Department of Biological Sciences, Louisiana State University, Baton Rouge, LA, 70803, USA,
| | | | | | | |
Collapse
|
27
|
Function and evolution of channels and transporters in photosynthetic membranes. Cell Mol Life Sci 2013; 71:979-98. [PMID: 23835835 PMCID: PMC3928508 DOI: 10.1007/s00018-013-1412-3] [Citation(s) in RCA: 40] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/05/2012] [Revised: 05/28/2013] [Accepted: 06/18/2013] [Indexed: 01/21/2023]
Abstract
Chloroplasts from land plants and algae originated from an endosymbiotic event, most likely involving an ancestral photoautotrophic prokaryote related to cyanobacteria. Both chloroplasts and cyanobacteria have thylakoid membranes, harboring pigment-protein complexes that perform the light-dependent reactions of oxygenic photosynthesis. The composition, function and regulation of these complexes have thus far been the major topics in thylakoid membrane research. For many decades, we have also accumulated biochemical and electrophysiological evidence for the existence of solute transthylakoid transport activities that affect photosynthesis. However, research dedicated to molecular identification of the responsible proteins has only recently emerged with the explosion of genomic information. Here we review the current knowledge about channels and transporters from the thylakoid membrane of Arabidopsis thaliana and of the cyanobacterium Synechocystis sp. PCC 6803. No homologues of these proteins have been characterized in algae, although similar sequences could be recognized in many of the available sequenced genomes. Based on phylogenetic analyses, we hypothesize a host origin for most of the so far identified Arabidopsis thylakoid channels and transporters. Additionally, the shift from a non-thylakoid to a thylakoid location appears to have occurred at different times for different transport proteins. We propose that closer control of and provision for the thylakoid by products of the host genome has been an ongoing process, rather than a one-step event. Some of the proteins recruited to serve in the thylakoid may have been the result of the increased specialization of its pigment-protein composition and organization in green plants.
Collapse
|
28
|
Blanco-Rivero A, Shutova T, Román MJ, Villarejo A, Martinez F. Phosphorylation controls the localization and activation of the lumenal carbonic anhydrase in Chlamydomonas reinhardtii. PLoS One 2012; 7:e49063. [PMID: 23139834 PMCID: PMC3490910 DOI: 10.1371/journal.pone.0049063] [Citation(s) in RCA: 55] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/21/2011] [Accepted: 10/09/2012] [Indexed: 11/25/2022] Open
Abstract
Background Cah3 is the only carbonic anhydrase (CA) isoform located in the thylakoid lumen of Chlamydomonas reinhardtii. Previous studies demonstrated its association with the donor side of the photosystem II (PSII) where it is required for the optimal function of the water oxidizing complex. However this enzyme has also been frequently proposed to perform a critical function in inorganic carbon acquisition and CO2 fixation and all mutants lacking Cah3 exhibit very poor growth after transfer to low CO2 conditions. Results/Conclusions In the present work we demonstrate that after transfer to low CO2, Cah3 is phosphorylated and that phosphorylation is correlated to changes in its localization and its increase in activity. When C. reinhardtii wild-type cells were acclimated to limiting CO2 conditions, the Cah3 activity increased about 5–6 fold. Under these conditions, there were no detectable changes in the level of the Cah3 polypeptide. The increase in activity was specifically inhibited in the presence of Staurosporine, a protein kinase inhibitor, suggesting that the Cah3 protein was post-translationally regulated via phosphorylation. Immunoprecipitation and in vitro dephosphorylation experiments confirm this hypothesis. In vivo phosphorylation analysis of thylakoid polypeptides indicates that there was a 3-fold increase in the phosphorylation signal of the Cah3 polypeptide within the first two hours after transfer to low CO2 conditions. The increase in the phosphorylation signal was correlated with changes in the intracellular localization of the Cah3 protein. Under high CO2 conditions, the Cah3 protein was only associated with the donor side of PSII in the stroma thylakoids. In contrast, in cells grown at limiting CO2 the protein was partly concentrated in the thylakoids crossing the pyrenoid, which did not contain PSII and were surrounded by Rubisco molecules. Significance This is the first report of a CA being post-translationally regulated and describing phosphorylation events in the thylakoid lumen.
Collapse
Affiliation(s)
| | - Tatiana Shutova
- Umeå Plant Science Centre, Department of Plant Physiology, Umeå University, Umeå, Sweden
| | - María José Román
- Department of Biology, Universidad Autónoma de Madrid, Madrid, Spain
| | - Arsenio Villarejo
- Department of Biology, Universidad Autónoma de Madrid, Madrid, Spain
- Umeå Plant Science Centre, Department of Plant Physiology, Umeå University, Umeå, Sweden
| | - Flor Martinez
- Department of Biology, Universidad Autónoma de Madrid, Madrid, Spain
- * E-mail:
| |
Collapse
|
29
|
Degradation of PsbO by the Deg protease HhoA Is thioredoxin dependent. PLoS One 2012; 7:e45713. [PMID: 23029195 PMCID: PMC3446894 DOI: 10.1371/journal.pone.0045713] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/14/2012] [Accepted: 08/24/2012] [Indexed: 02/02/2023] Open
Abstract
The widely distributed members of the Deg/HtrA protease family play an important role in the proteolysis of misfolded and damaged proteins. Here we show that the Deg protease rHhoA is able to degrade PsbO, the extrinsic protein of the Photosystem II (PSII) oxygen-evolving complex in Synechocystis sp. PCC 6803 and in spinach. PsbO is known to be stable in its oxidized form, but after reduction by thioredoxin it became a substrate for recombinant HhoA (rHhoA). rHhoA cleaved reduced eukaryotic (specifically, spinach) PsbO at defined sites and created distinct PsbO fragments that were not further degraded. As for the corresponding prokaryotic substrate (reduced PsbO of Synechocystis sp. PCC 6803), no PsbO fragments were observed. Assembly to PSII protected PsbO from degradation. For Synechocystis sp. PCC 6803, our results show that HhoA, HhoB, and HtrA are localized in the periplasma and/or at the thylakoid membrane. In agreement with the idea that PsbO could be a physiological substrate for Deg proteases, part of the cellular fraction of the three Deg proteases of Synechocystis sp. PCC 6803 (HhoA, HhoB, and HtrA) was detected in the PSII-enriched membrane fraction.
Collapse
|
30
|
Evidence for nucleotide-dependent processes in the thylakoid lumen of plant chloroplasts--an update. FEBS Lett 2012; 586:2946-54. [PMID: 22796491 DOI: 10.1016/j.febslet.2012.07.005] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/29/2012] [Revised: 07/04/2012] [Accepted: 07/05/2012] [Indexed: 12/21/2022]
Abstract
The thylakoid lumen is an aqueous chloroplast compartment enclosed by the thylakoid membrane network. Bioinformatic and proteomic studies indicated the existence of 80-90 thylakoid lumenal proteins in Arabidopsis thaliana, having photosynthetic, non-photosynthetic or unclassified functions. None of the identified lumenal proteins had canonical nucleotide-binding motifs. It was therefore suggested that, in contrast to the chloroplast stroma harboring nucleotide-dependent enzymes and other proteins, the thylakoid lumen is a nucleotide-free compartment. Based on recent findings, we provide here an updated view about the presence of nucleotides in the thylakoid lumen of plant chloroplasts, and their role in function and dynamics of photosynthetic complexes.
Collapse
|
31
|
Spetea C, Pfeil BE, Schoefs B. Phylogenetic Analysis of the Thylakoid ATP/ADP Carrier Reveals New Insights into Its Function Restricted to Green Plants. FRONTIERS IN PLANT SCIENCE 2012; 2:110. [PMID: 22629269 PMCID: PMC3355511 DOI: 10.3389/fpls.2011.00110] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 09/30/2011] [Accepted: 12/17/2011] [Indexed: 06/01/2023]
Abstract
ATP is the common energy currency of cellular metabolism in all living organisms. Most of them synthesize ATP in the cytosol or on the mitochondrial inner membrane, whereas land plants, algae, and cyanobacteria also produce it on the thylakoid membrane during the light-dependent reactions of photosynthesis. From the site of synthesis, ATP is transported to the site of utilization via intracellular membrane transporters. One major type of ATP transporters is represented by the mitochondrial ADP/ATP carrier family. Here we review a recently characterized member, namely the thylakoid ATP/ADP carrier from Arabidopsis thaliana (AtTAAC). Thus far, no orthologs of this carrier have been characterized in other organisms, although similar sequences can be recognized in many sequenced genomes. Protein Sequence database searches and phylogenetic analyses indicate the absence of TAAC in cyanobacteria and its appearance early in the evolution of photosynthetic eukaryotes. The TAAC clade is composed of carriers found in land plants and some green algae, but no proteins from other photosynthetic taxa, such as red algae, brown algae, and diatoms. This implies that TAAC-like sequences arose only once before the divergence of green algae and land plants. Based on these findings, it is proposed that TAAC may have evolved in response to the need of a new activity in higher photosynthetic eukaryotes. This activity may provide the energy to drive reactions during biogenesis and turnover of photosynthetic complexes, which are heterogeneously distributed in a thylakoid membrane system composed of appressed and non-appressed regions.
Collapse
Affiliation(s)
- Cornelia Spetea
- Department of Plant and Environmental Sciences, University of GothenburgGothenburg, Sweden
| | - Bernard E. Pfeil
- Department of Plant and Environmental Sciences, University of GothenburgGothenburg, Sweden
| | - Benoît Schoefs
- Mer, Molécules, Santé, Faculté des Sciences et Techniques, Université du Maine à Le MansLe Mans, France
| |
Collapse
|
32
|
Lundberg E, Storm P, Schröder WP, Funk C. Crystal structure of the TL29 protein from Arabidopsis thaliana: An APX homolog without peroxidase activity. J Struct Biol 2011; 176:24-31. [DOI: 10.1016/j.jsb.2011.07.004] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/03/2011] [Revised: 07/08/2011] [Accepted: 07/12/2011] [Indexed: 10/17/2022]
|
33
|
Haferkamp I, Fernie AR, Neuhaus HE. Adenine nucleotide transport in plants: much more than a mitochondrial issue. TRENDS IN PLANT SCIENCE 2011; 16:507-15. [PMID: 21622019 DOI: 10.1016/j.tplants.2011.04.001] [Citation(s) in RCA: 24] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/21/2011] [Revised: 04/14/2011] [Accepted: 04/16/2011] [Indexed: 05/03/2023]
Abstract
Adenine nucleotides play a vital role in plant metabolism and physiology, essentially representing the major energy currency of the cell. Heterotrophic cells regenerate most of the ATP in mitochondria, whereas autotrophic cells also possess chloroplasts, representing a second powerhouse for ATP regeneration. Even though the synthesis of these nucleotides is restricted to a few locations, their use is nearly ubiquitous across the cell and thereby highly efficient systems are required to transport these molecules into and out of different compartments. Here, we discuss the location, biochemical characterization and evolution of corresponding transport systems in plants. We include recent scientific findings concerning organellar transporters from plants and algae and also focus on the physiological importance of adenine nucleotide exchange in these cells.
Collapse
Affiliation(s)
- Ilka Haferkamp
- Plant Physiology, University of Kaiserslautern, Erwin-Schrödinger-Str., D-67663 Kaiserslautern, Germany
| | | | | |
Collapse
|
34
|
The extrinsic proteins of Photosystem II. BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS 2011; 1817:121-42. [PMID: 21801710 DOI: 10.1016/j.bbabio.2011.07.006] [Citation(s) in RCA: 187] [Impact Index Per Article: 14.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/11/2011] [Revised: 07/11/2011] [Accepted: 07/12/2011] [Indexed: 02/08/2023]
Abstract
In this review we examine the structure and function of the extrinsic proteins of Photosystem II. These proteins include PsbO, present in all oxygenic organisms, the PsbP and PsbQ proteins, which are found in higher plants and eukaryotic algae, and the PsbU, PsbV, CyanoQ, and CyanoP proteins, which are found in the cyanobacteria. These proteins serve to optimize oxygen evolution at physiological calcium and chloride concentrations. They also shield the Mn(4)CaO(5) cluster from exogenous reductants. Numerous biochemical, genetic and structural studies have been used to probe the structure and function of these proteins within the photosystem. We will discuss the most recent proposed functional roles for these components, their structures (as deduced from biochemical and X-ray crystallographic studies) and the locations of their proposed binding domains within the Photosystem II complex. This article is part of a Special Issue entitled: Photosystem II.
Collapse
|
35
|
Spetea C, Schoefs B. Solute transporters in plant thylakoid membranes: Key players during photosynthesis and light stress. Commun Integr Biol 2011; 3:122-9. [PMID: 20585503 DOI: 10.4161/cib.3.2.10909] [Citation(s) in RCA: 32] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/09/2009] [Accepted: 12/09/2009] [Indexed: 11/19/2022] Open
Abstract
Plants utilize sunlight to drive photosynthetic energy conversion in the chloroplast thylakoid membrane. Here are located four major photosynthetic complexes, about which we have great knowledge in terms of structure and function. However, much less we know about auxiliary proteins, such as transporters, ensuring an optimum function and turnover of these complexes. The most prominent thylakoid transporter is the proton-translocating ATP-synthase. Recently, four additional transporters have been identified in the thylakoid membrane of Arabidopsis thaliana, namely one copper-transporting P-ATPase, one chloride channel, one phosphate transporter, and one ATP/ADP carrier. Here, we review the current knowledge on the function and physiological role of these transporters during photosynthesis and light stress in plants. Subsequently, we make a survey on the outlook of thylakoid activities awaiting identification of responsible proteins. Such knowledge is necessary to understand the thylakoid network of transporters, and to design strategies for bioengineering crop plants in the future.
Collapse
|
36
|
Slowik D, Rossmann M, Konarev PV, Irrgang KD, Saenger W. Structural Investigation of PsbO from Plant and Cyanobacterial Photosystem II. J Mol Biol 2011; 407:125-37. [DOI: 10.1016/j.jmb.2011.01.013] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/24/2010] [Revised: 12/31/2010] [Accepted: 01/07/2011] [Indexed: 02/02/2023]
|
37
|
Bricker TM, Frankel LK. Auxiliary functions of the PsbO, PsbP and PsbQ proteins of higher plant Photosystem II: a critical analysis. JOURNAL OF PHOTOCHEMISTRY AND PHOTOBIOLOGY B-BIOLOGY 2011; 104:165-78. [PMID: 21353792 DOI: 10.1016/j.jphotobiol.2011.01.025] [Citation(s) in RCA: 58] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/03/2010] [Revised: 01/25/2011] [Accepted: 01/31/2011] [Indexed: 01/08/2023]
Abstract
Numerous studies over the last 25 years have established that the extrinsic PsbO, PsbP and PsbQ proteins of Photosystem II play critically important roles in maintaining optimal manganese, calcium and chloride concentrations at the active site of Photosystem II. Chemical or genetic removal of these components induces multiple and profound defects in Photosystem II function and oxygen-evolving complex stability. Recently, a number of studies have indicated possible additional roles for these proteins within the photosystem. These include putative enzymatic activities, regulation of reaction center protein turnover, modulation of thylakoid membrane architecture, the mediation of PS II assembly/stability, and effects on the reducing side of the photosystem. In this review we will critically examine the findings which support these auxiliary functions and suggest additional lines of investigations which could clarify the nature of the functional interactions of these proteins with the photosystem.
Collapse
Affiliation(s)
- Terry M Bricker
- Department of Biological Sciences, Division of Biochemistry and Molecular Biology, Louisiana State University, Baton Rouge, LA 70803, USA.
| | | |
Collapse
|
38
|
Weber APM, Linka N. Connecting the plastid: transporters of the plastid envelope and their role in linking plastidial with cytosolic metabolism. ANNUAL REVIEW OF PLANT BIOLOGY 2011; 62:53-77. [PMID: 21526967 DOI: 10.1146/annurev-arplant-042110-103903] [Citation(s) in RCA: 78] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/21/2023]
Abstract
Plastids have a multitude of functions in eukaryotic cells, ranging from photosynthesis to storage, and a role in essential biosynthetic pathways. All plastids are of either primary or higher-order endosymbiotic origin. That is, either a photosynthetic cyanobacterium was integrated into a mitochondriate eukaryotic host cell (primary endosymbiosis) or a plastid-bearing eukaryotic cell merged with another eukaryotic cell (secondary or higher-order endosymbioses), thereby passing on the plastid between various eukaryotic lineages. For all of these endosymbioses to become functional, it was essential to establish metabolic connections between organelle and host cell. Here, we review the present understanding of metabolite exchange between plastids and the surrounding cytosol in the context of the endosymbiotic origin of plastids in various eukaryotic lineages. We show that only a small number of transporters that can be traced down to the primary endosymbiotic event are conserved between plastids of diverse origins.
Collapse
Affiliation(s)
- Andreas P M Weber
- Institute of Plant Biochemistry, Heinrich-Heine Universität Düsseldorf, 40225 Düsseldorf, Germany.
| | | |
Collapse
|
39
|
Ruiz-Pavón L, Karlsson PM, Carlsson J, Samyn D, Persson B, Persson BL, Spetea C. Functionally important amino acids in the Arabidopsis thylakoid phosphate transporter: homology modeling and site-directed mutagenesis. Biochemistry 2010; 49:6430-9. [PMID: 20565143 PMCID: PMC2911078 DOI: 10.1021/bi100239j] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/24/2022]
Abstract
![]()
The anion transporter 1 (ANTR1) from Arabidopsis thaliana, homologous to the mammalian members of the solute carrier 17 (SLC17) family, is located in the chloroplast thylakoid membrane. When expressed heterologously in Escherichia coli, ANTR1 mediates a Na+-dependent active transport of inorganic phosphate (Pi). The aim of this study was to identify amino acid residues involved in Pi binding and translocation by ANTR1 and in the Na+ dependence of its activity. A three-dimensional structural model of ANTR1 was constructed using the crystal structure of glycerol 3-phosphate/phosphate antiporter from E. coli as a template. Based on this model and multiple sequence alignments, five highly conserved residues in plant ANTRs and mammalian SLC17 homologues have been selected for site-directed mutagenesis, namely, Arg-120, Ser-124, and Arg-201 inside the putative translocation pathway and Arg-228 and Asp-382 exposed at the cytoplasmic surface of the protein. The activities of the wild-type and mutant proteins have been analyzed using expression in E. coli and radioactive Pi transport assays and compared with bacterial cells carrying an empty plasmid. The results from Pi- and Na+-dependent kinetics indicate the following: (i) Arg-120 and Arg-201 may be important for binding and translocation of the substrate; (ii) Ser-124 may function as a transient binding site for Na+ ions in close proximity to the periplasmic side; (iii) Arg-228 and Asp-382 may participate in interactions associated with protein conformational changes required for full transport activity. Functional characterization of ANTR1 should provide useful insights into the function of other plant and mammalian SLC17 homologous transporters.
Collapse
Affiliation(s)
- Lorena Ruiz-Pavón
- Division of Molecular Genetics, Department of Physics, Chemistry, and Biology, Linköping University, Linköping, Sweden
| | | | | | | | | | | | | |
Collapse
|
40
|
Pobeguts OV, Smolova TN, Timoshevsky DS, Klimov VV. Interaction of bicarbonate with the manganese-stabilizing protein of photosystem II. JOURNAL OF PHOTOCHEMISTRY AND PHOTOBIOLOGY. B, BIOLOGY 2010; 100:30-7. [PMID: 20466559 DOI: 10.1016/j.jphotobiol.2010.04.005] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/10/2010] [Revised: 04/13/2010] [Accepted: 04/14/2010] [Indexed: 10/19/2022]
Abstract
The effect of reversible removal of HCO(3)(-) on structural re-arrangements in the Mn-stabilizing protein (MSP) of photosystem II, isolated from pea leaves, was studied using measurements of characteristic alterations in fluorescence of hydrophobic probe 8-anilino-1-naphthalene-sulfonic acid (ANS). It was shown that the treatments capable of removal of HCO(3)(-) (or CO(2)) from possible binding sites in MSP (pH lowering from 6.5 to 3.5, addition of a structurally similar anion HCO(3)(-) in concentration 1-20mM or air evacuation at pH 3.5) result in a significant (up to 370%) increase of ANS fluorescence (indicative of structural changes in MSP), whereas HCO(3)(-) lowers the ANS fluorescence to the initial level observed in untreated protein at pH 6.5. Since the effects are revealed at (sub)micromolar concentrations of HCO(3)(-), the specific high-affinity binding of HCO(3)(-) (or CO(2)) to MSP (required for its native structure preservation) is proposed. Possible bicarbonate binding sites and its physiological role within the water-oxidizing complex of photosystem II are discussed.
Collapse
Affiliation(s)
- Olga V Pobeguts
- Institute of Basic Biological Problems, Russian Academy of Sciences, Pushchino, Moscow Region 142290, Russia.
| | | | | | | |
Collapse
|
41
|
Yin L, Lundin B, Bertrand M, Nurmi M, Solymosi K, Kangasjärvi S, Aro EM, Schoefs B, Spetea C. Role of thylakoid ATP/ADP carrier in photoinhibition and photoprotection of photosystem II in Arabidopsis. PLANT PHYSIOLOGY 2010; 153:666-77. [PMID: 20357135 PMCID: PMC2879782 DOI: 10.1104/pp.110.155804] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/03/2023]
Abstract
The chloroplast thylakoid ATP/ADP carrier (TAAC) belongs to the mitochondrial carrier superfamily and supplies the thylakoid lumen with stromal ATP in exchange for ADP. Here, we investigate the physiological consequences of TAAC depletion in Arabidopsis (Arabidopsis thaliana). We show that the deficiency of TAAC in two T-DNA insertion lines does not modify the chloroplast ultrastructure, the relative amounts of photosynthetic proteins, the pigment composition, and the photosynthetic activity. Under growth light conditions, the mutants initially displayed similar shoot weight, but lower when reaching full development, and were less tolerant to high light conditions in comparison with the wild type. These observations prompted us to study in more detail the effects of TAAC depletion on photoinhibition and photoprotection of the photosystem II (PSII) complex. The steady-state phosphorylation levels of PSII proteins were not affected, but the degradation of the reaction center II D1 protein was blocked, and decreased amounts of CP43-less PSII monomers were detected in the mutants. Besides this, the mutant leaves displayed a transiently higher nonphotochemical quenching of chlorophyll fluorescence than the wild-type leaves, especially at low light. This may be attributed to the accumulation in the absence of TAAC of a higher electrochemical H(+) gradient in the first minutes of illumination, which more efficiently activates photoprotective xanthophyll cycle-dependent and independent mechanisms. Based on these results, we propose that TAAC plays a critical role in the disassembly steps during PSII repair and in addition may balance the trans-thylakoid electrochemical H(+) gradient storage.
Collapse
|
42
|
Opanasenko VK, Vasyukhina LA, Naydov IA. Two types of ammonium uncoupling in pea chloroplasts. BIOCHEMISTRY. BIOKHIMIIA 2010; 75:784-91. [PMID: 20636271 DOI: 10.1134/s0006297910060143] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
Abstract
The effect of ammonium on ATP synthesis, electron transfer, and light-induced uptake of hydrogen ions in pea chloroplasts was studied. It is shown that the dependence of these reactions on ammonium concentration could be due to effects of two different uncoupling processes. The first process is induced by low ammonium concentrations (<0.2 mM); the second one is observed in the NH(4)Cl concentration interval of 0.5-5.0 mM. The first type of uncoupling is stimulated by palmitic acid or by N,N'-dicyclohexylcarbodiimide, while the second is stimulated by chloroplast thylakoid swelling caused by energy-dependent osmotic gradients. In the presence of the fluorescent dye sulforhodamine B, which does not penetrate through the cell membrane, this swelling causes the dye to enter the lumens. It is supposed that ammonium activates two different routes of cation leakage from the lumen. The first route involves channel proteins, while the second is a mechanosensitive pore that opens in response to osmotic gradients.
Collapse
Affiliation(s)
- V K Opanasenko
- Institute of Fundamental Biological Problems, Russian Academy of Sciences, Pushchino, Moscow Region, Russia.
| | | | | |
Collapse
|
43
|
Abstract
Due to the presence of plastids, eukaryotic photosynthetic cells represent the most highly compartmentalized eukaryotic cells. This high degree of compartmentation requires the transport of solutes across intracellular membrane systems by specific membrane transporters. In this review, we summarize the recent progress on functionally characterized intracellular plant membrane transporters and we link transporter functions to Arabidopsis gene identifiers and to the transporter classification system. In addition, we outline challenges in further elucidating the plant membrane permeome and we provide an outline of novel approaches for the functional characterization of membrane transporters.
Collapse
Affiliation(s)
- Nicole Linka
- Institute of Plant Biochemistry, Heinrich-Heine Universität Düsseldorf, Geb. 26.03.01, Universitätsstrasse 1, Düsseldorf, Germany
| | | |
Collapse
|
44
|
Granlund I, Storm P, Schubert M, García-Cerdán JG, Funk C, Schröder WP. The TL29 protein is lumen located, associated with PSII and not an ascorbate peroxidase. PLANT & CELL PHYSIOLOGY 2009; 50:1898-1910. [PMID: 19828564 DOI: 10.1093/pcp/pcp134] [Citation(s) in RCA: 27] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/28/2023]
Abstract
The TL29 protein is one of the more abundant proteins in the thylakoid lumen of plant chloroplasts. Based on its sequence homology to ascorbate peroxidases, but without any supporting biochemical evidence, TL29 was suggested to be involved in the plant defense system against reactive oxygen species and consequently renamed to APX4. Our in vivo and in vitro analyses failed to show any peroxidase activity associated with TL29; it bound neither heme nor ascorbate. Recombinant overexpressed TL29 had no ascorbate-dependent peroxidase activity, and various mutational analyses aiming to convert TL29 into an ascorbate peroxidase failed. Furthermore, in the thylakoid lumen no such activity could be associated with TL29 and, additionally, TL29 knock-out mutants did not show any decreased peroxidase activity or increased content of radical oxygen species when grown under light stress. Instead we could show that TL29 is a lumen-located component associated with PSII.
Collapse
Affiliation(s)
- Irene Granlund
- Department of Forest Genetics and Plant Physiology, Swedish University of Agricultural Sciences, SE-901 83 Umeå, Sweden
| | | | | | | | | | | |
Collapse
|
45
|
Opanasenko VK, Vasyukhina LA. Synergism of ammonium and palmitic acid in uncoupling of electron transfer and ATP synthesis in chloroplasts. BIOCHEMISTRY. BIOKHIMIIA 2009; 74:643-7. [PMID: 19645669 DOI: 10.1134/s000629790906008x] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
Abstract
Uncoupling by ammonium of electron transfer and ATP synthesis during linear transfer of electrons from water to photosystem 1 acceptors was studied in pea chloroplasts. It was shown that 40 microM palmitic acid decreased several-fold the ammonium concentrations necessary for 50% inhibition of ATP synthesis. The protonophore carbonyl cyanide m-chlorophenylhydrazone has no such property. The enhancement by palmitate of ammonium-induced uncoupling is accompanied by acceleration of basal electron transfer and decrease in the photoinduced uptake of hydrogen ions (H+). In the absence of ammonium, palmitate has no effect on basal transport and stimulates uptake of hydrogen ions. This means that in the case of combined action of palmitate and ammonium an additional leakage of H+ takes place, resulting in dissipation of the pH gradient. Synergic action of two metabolites, free fatty acid and ammonium, is supposed to provide for functioning of a system of mild regulation of energy coupling processes in native plant cell chloroplasts. Possible mechanisms of synergism are discussed.
Collapse
Affiliation(s)
- V K Opanasenko
- Institute of Basic Biological Problems, Russian Academy of Sciences, Pushchino, Moscow Region, 142290, Russia.
| | | |
Collapse
|
46
|
Schriek S, Kahmann U, Staiger D, Pistorius EK, Michel KP. Detection of an L-amino acid dehydrogenase activity in Synechocystis sp. PCC 6803. JOURNAL OF EXPERIMENTAL BOTANY 2009; 60:1035-46. [PMID: 19213808 PMCID: PMC2652061 DOI: 10.1093/jxb/ern352] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/23/2008] [Revised: 12/08/2008] [Accepted: 12/09/2008] [Indexed: 05/21/2023]
Abstract
The protein Slr0782 from Synechocystis sp. PCC 6803, which has similarity to L-amino acid oxidase from Synechococcus elongatus PCC 6301 and PCC 7942, has been characterized in part. Immunoblot blot analysis showed that Slr0782 is mainly thylakoid membrane-associated. Moreover, expression of slr0782 mRNA and Slr0782 protein were analyzed and an activity assay was developed. Utilizing toluene-permeabilized cells, an L-arginine-stimulated O(2) uptake became detectable in Synechocystis sp. PCC 6803. Besides oxidizing the basic L-amino acids L-arginine, L-lysine, L-ornithine, and L-histidine, a number of other L-amino acids were also substrates, while D-amino acids were not. The best substrate was L-cysteine, and the second best was L-arginine. The L-arginine-stimulated O(2) uptake was inhibited by cations. The inhibition by o-phenanthroline and salicylhydroxamic acid suggested the presence of a transition metal besides FAD in the enzyme. Moreover, it is shown that inhibitors of the respiratory electron transport chain, such as KCN and 2,5-dibromo-3-methyl-6-isopropyl-p-benzoquinone, also inhibited the L-arginine-stimulated O(2) uptake, suggesting that Slr0782 functions as an L-arginine dehydrogenase, mediating electron transfer from L-arginine into the respiratory electron transport chain utilizing O(2) as electron acceptor via cytochrome oxidase. The results imply that Slr0782 is an additional substrate dehydrogenase being able to interact with the electron transport chain of the thylakoid membrane.
Collapse
|
47
|
Williamson AK. Structural and functional aspects of the MSP (PsbO) and study of its differences in thermophilic versus mesophilic organisms. PHOTOSYNTHESIS RESEARCH 2008; 98:365-89. [PMID: 18780158 DOI: 10.1007/s11120-008-9353-7] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/29/2008] [Accepted: 08/06/2008] [Indexed: 05/16/2023]
Abstract
The Manganese Stabilizing Protein (MSP) of Photosystem II (PSII) is a so-called extrinsic subunit, which reversibly associates with the other membrane-bound PSII subunits. The MSP is essential for maximum rates of O(2) production under physiological conditions as stabilizes the catalytic [Mn(4)Ca] cluster, which is the site of water oxidation. The function of the MSP subunit in the PSII complex has been extensively studied in higher plants, and the structure of non-PSII associated MSP has been studied by low-resolution biophysical techniques. Recently, crystal structures of PSII from the thermophilic cyanobacterium Thermosynechococcus elongatus have resolved the MSP subunit in its PSII-associated state. However, neither any crystal structure is available yet for MSP from mesophilic organisms, higher plants or algae nor has the non-PSII associated form of MSP been crystallized. This article reviews the current understanding of the structure, dynamics, and function of MSP, with a particular focus on properties of the MSP from T. elongatus that may be attributable to the thermophilic ecology of this organism rather than being general features of MSP.
Collapse
Affiliation(s)
- Adele K Williamson
- Research School of Biological Sciences, the Australian National University, Canberra 0200, Australia.
| |
Collapse
|
48
|
Lundin B, Nurmi M, Rojas-Stuetz M, Aro EM, Adamska I, Spetea C. Towards understanding the functional difference between the two PsbO isoforms in Arabidopsis thaliana--insights from phenotypic analyses of psbo knockout mutants. PHOTOSYNTHESIS RESEARCH 2008; 98:405-14. [PMID: 18709442 DOI: 10.1007/s11120-008-9325-y] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/23/2008] [Accepted: 06/26/2008] [Indexed: 05/05/2023]
Abstract
The extrinsic PsbO subunit of the water-oxidizing photosystem II (PSII) complex is represented by two isoforms in Arabidopsis thaliana, namely PsbO1 and PsbO2. Recent analyses of psbo1 and psbo2 knockout mutants have brought insights into their roles in photosynthesis and light stress. Here we analyzed the two psbo mutants in terms of PsbOs expression pattern, organization of PSII complexes and GTPase activity. Both PsbOs are present in wild-type plants, and their expression is mutually controlled in the mutants. Almost all PSII complexes are in the monomeric form not only in the psbo1 but also in the psbo2 mutant grown under high-light conditions. This results either from an enhanced susceptibility of PSII to photoinactivation or from malfunction of the repair cycle. Notably, the psbo1 mutant displays such problems even under growth-light conditions. These results together with the finding that PsbO2 has a threefold higher GTPase activity than PsbO1 have significance for the turnover of the PSII D1 subunit in Arabidopsis.
Collapse
Affiliation(s)
- Björn Lundin
- Division of Molecular Genetics, Department of Physics, Chemistry and Biology, Linköping University, 58183 Linkoping, Sweden
| | | | | | | | | | | |
Collapse
|
49
|
Ifuku K, Ishihara S, Shimamoto R, Ido K, Sato F. Structure, function, and evolution of the PsbP protein family in higher plants. PHOTOSYNTHESIS RESEARCH 2008; 98:427-37. [PMID: 18791807 DOI: 10.1007/s11120-008-9359-1] [Citation(s) in RCA: 26] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/29/2008] [Accepted: 08/18/2008] [Indexed: 05/06/2023]
Abstract
The PsbP is a thylakoid lumenal subunit of photosystem II (PSII), which has developed specifically in higher plants and green algae. In higher plants, the molecular function of PsbP has been intensively investigated by release-reconstitution experiments in vitro. Recently, solution of a high-resolution structure of PsbP has enabled investigation of structure-function relationships, and efficient gene-silencing techniques have demonstrated the crucial role of PsbP in PSII activity in vivo. Furthermore, genomic and proteomic studies have shown that PsbP belongs to the divergent PsbP protein family, which consists of about 10 members in model plants such as Arabidopsis and rice. Characterization of the molecular function of PsbP homologs using Arabidopsis mutants suggests that each plays a distinct and important function in maintaining photosynthetic electron transfer. In this review, recent findings regarding the molecular functions of PsbP and other PsbP homologs in higher plants are summarized, and the molecular evolution of these proteins is discussed.
Collapse
Affiliation(s)
- Kentaro Ifuku
- Graduate School of Biostudies, Kyoto University, Kyoto 606-8502, Japan.
| | | | | | | | | |
Collapse
|
50
|
Schriek S, Aguirre-von-Wobeser E, Nodop A, Becker A, Ibelings BW, Bok J, Staiger D, Matthijs HCP, Pistorius EK, Michel KP. Transcript profiling indicates that the absence of PsbO affects the coordination of C and N metabolism in Synechocystis sp. PCC 6803. PHYSIOLOGIA PLANTARUM 2008; 133:525-543. [PMID: 18419737 DOI: 10.1111/j.1399-3054.2008.01119.x] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/26/2023]
Abstract
Transcript profiling of nitrate-grown Synechocystis sp. PCC 6803 PsbO-free mutant cells in comparison to wild-type (WT) detected substantial deviations. Because we had previously observed phenotypical differences between Synechocystis sp. PCC 6803 WT and its corresponding PsbO-free mutant when cultivated with l-arginine as sole N source and a light intensity of 200 mumol photons m(-2) s(-1), we also performed transcript profiling for both strains grown either with nitrate or with l-arginine as sole N source. We observed a total number of 520 differentially regulated transcripts in Synechocystis WT because of a shift from nitrate- to l-arginine-containing BG11 medium, while we detected only 13 differentially regulated transcripts for the PsbO-free mutant. Thus, the PsbO-free Synechocystis mutant had already undergone a preconditioning process for growth with l-arginine in comparison to WT. While Synechocystis WT suffered from growth with l-arginine at a light intensity of 200 mumol photons m(-2) s(-1), the PsbO-free mutant developed only a minor stress phenotype. In summary, our results suggest that the absence of PsbO in Synechocystis affects the coordination of photosynthesis/respiration and l-arginine metabolism through complex probably redox-mediated regulatory pathways. In addition, we show that a comparison of the transcriptomes of nitrate-grown Synechococcus elongatus PCC 7942 WT cells and its corresponding PsbO-free mutant cells resulted in only a few differentially regulated transcripts between both strains. The absence of the manganese/calcium-stabilizing PsbO protein of PSII with an assigned regulatory function for photosynthetic water oxidation causes bigger changes in the transcriptome of the permissive photoheterotrophically growing Synechocystis sp. PCC 6803 than in the transcriptome of the obligate photoautotrophically growing S. elongatus PCC 7942.
Collapse
Affiliation(s)
- Sarah Schriek
- Lehrstuhl für Molekulare Zellphysiologie, Universität Bielefeld, Universitätsstr. 25, D-33615 Bielefeld, Germany
| | | | | | | | | | | | | | | | | | | |
Collapse
|