Time-resolved resting-state brain networks

Transdiagnostic network alterations and associated neurotransmitter signatures across major psychiatric disorders in adolescents: Evidence from edge-centric analysis of time-varying functional brain networks

BACKGROUND

Adolescence is a pivotal phase marked by heightened vulnerability to the onset of psychiatric disorders. However, there are few transdiagnostic studies of dynamic brain networks across major psychiatric disorders during this phase.

METHODS

We collected resting-state functional MRI data from 189 adolescent patients (61 with bipolar disorder, 73 with major depressive disorder, and 55 with schizophrenia) and 181 healthy adolescents. Functional networks were constructed using a state-of-art edge-centric dynamic functional connectivity (DFC) approach.

RESULTS

Four DFC states were identified for the healthy adolescents that were related to different behavioral and cognitive terms. Disorder-related alterations were observed in two states involving motor and somatosensory processing and one state involving various cognitive functions. Regardless of the state, the three patient groups exhibited lower FC that were mainly involved in edges between different functional subsystems and were predominantly linked to regions in the somatomotor network. The patients with major depressive disorder additionally showed increased FC that were primarily linked to default mode regions. Graph-based network analysis revealed different patterns of disrupted small-world organization and altered nodal degree in the disorders in a state-dependent manner. The nodal degree alterations were correlated with the concentration of various neurotransmitters. Intriguingly, the noradrenaline concentration was engaged in the nodal degree alterations in each patient group. Finally, decreased FC involving regions in the somatomotor network showed significant correlations with clinical variables in the major depressive disorder patients.

CONCLUSION

These findings may help understand the developmental pathways associated with the heightened vulnerability to major psychiatric disorders during adolescence.

Noninvasive reduction of neural rigidity alters autistic behaviors in humans

Autistic behaviors correlate with reductions in specific brain-state transitions in global neural dynamics, implying that the mitigation of such rigid brain dynamics may alter autistic traits. To examine this possibility, we investigated longitudinal behavioral effects of state-dependent transcranial magnetic stimulation (TMS) in autistic adults. We found that excitatory TMS over the right parietal lobule decreased neural rigidity, which commensurately reduced social and nonsocial autistic behaviors. Specifically, TMS-induced neural flexibility immediately decreased cognitive inflexibility and slowly reduced overstable perception and atypical nonverbal communication. In particular, perceptual overstability was reduced after TMS-induced neural flexibility strengthened the coupling between the frontoparietal and visual networks, whereas atypical nonverbal communication became less explicit when the neural flexibility enhanced the coupling between the frontoparietal, default mode and salience networks. These results indicate that alteration of neural rigidity could change multiple autistic traits.

Alterations in static and dynamic functional network connectivity in chronic low back pain: a resting-state network functional connectivity and machine learning study

Low back pain (LBP) is a prevalent pain condition whose persistence can lead to changes in the brain regions responsible for sensory, cognitive, attentional, and emotional processing. Previous neuroimaging studies have identified various structural and functional abnormalities in patients with LBP; however, how the static and dynamic large-scale functional network connectivity (FNC) of the brain is affected in these patients remains unclear. Forty-one patients with chronic low back pain (cLBP) and 42 healthy controls underwent resting-state functional MRI scanning. The independent component analysis method was employed to extract the resting-state networks. Subsequently, we calculate and compare between groups for static intra- and inter-network functional connectivity. In addition, we investigated the differences between dynamic functional network connectivity and dynamic temporal metrics between cLBP patients and healthy controls. Finally, we tried to distinguish cLBP patients from healthy controls by support vector machine method. The results showed that significant reductions in functional connectivity within the network were found within the DMN,DAN, and ECN in cLBP patients. Significant between-group differences were also found in static FNC and in each state of dynamic FNC. In addition, in terms of dynamic temporal metrics, fraction time and mean dwell time were significantly altered in cLBP patients. In conclusion, our study suggests the existence of static and dynamic large-scale brain network alterations in patients with cLBP. The findings provide insights into the neural mechanisms underlying various brain function abnormalities and altered pain experiences in patients with cLBP.

Magnetoencephalography Dimensionality Reduction Informed by Dynamic Brain States

Complex spontaneous brain dynamics mirror the large number of interactions taking place among regions, supporting higher functions. Such complexity is manifested in the interregional dependencies among signals derived from different brain areas, as observed utilising neuroimaging techniques, like magnetoencephalography. The dynamics of this data produce numerous subsets of active regions at any moment as they evolve. Notably, converging evidence shows that these states can be understood in terms of transient coordinated events that spread across the brain over multiple spatial and temporal scales. Those can be used as a proxy of the 'effectiveness' of the dynamics, as they become stereotyped or disorganised in neurological diseases. However, given the high-dimensional nature of the data, representing them has been challenging thus far. Dimensionality reduction techniques are typically deployed to describe complex interdependencies and improve their interpretability. However, many dimensionality reduction techniques lose information about the sequence of configurations that took place. Here, we leverage a newly described algorithm, potential of heat-diffusion for affinity-based transition embedding (PHATE), specifically designed to preserve the dynamics of the system in the low-dimensional embedding space. We analysed source-reconstructed resting-state magnetoencephalography from 18 healthy subjects to represent the dynamics of the configuration in low-dimensional space. After reduction with PHATE, unsupervised clustering via K-means is applied to identify distinct clusters. The topography of the states is described, and the dynamics are represented as a transition matrix. All the results have been checked against null models, providing a parsimonious account of the large-scale, fast, aperiodic dynamics during resting-state. The study applies the PHATE algorithm to source-reconstructed magnetoencephalography (MEG) data, reducing dimensionality while preserving large-scale neural dynamics. Results reveal distinct configurations, or 'states', of brain activity, identified via unsupervised clustering. Their transitions are characterised by a transition matrix. This method offers a simplified yet rich view of complex brain interactions, opening new perspectives on large-scale brain dynamics in health and disease.

Disentangling the Switching Behavior in Functional Connectivity Dynamics in Autism Spectrum Disorder: Insights from Developmental Cohort Analysis and Molecular-Cellular Associations

Characterizing the transition or switching behavior between multistable brain states in functional connectivity dynamics (FCD) holds promise for uncovering the underlying neuropathology of Autism Spectrum Disorder (ASD). However, whether and how switching behaviors in FCD change in patients with developmental ASD, as well as their cellular and molecular basis, remains unexplored. This study develops a region-wise FCD switching index (RFSI) to investigate the drivers of FCD. This work finds that brain regions within the salience, default mode, and frontoparietal networks serve as abnormal drivers of FCD in ASD across different developmental stages. Additionally, changes in RFSI at different developmental stages of ASD correlated with transcriptomic profiles and neurotransmitter density maps. Importantly, the abnormal RFSI identifies in humans has also been observed in genetically edited ASD monkeys. Finally, single-nucleus RNA sequencing data from patients with developmental ASD are analyzed and aberrant switching behaviors in FCD may be mediated by somatostatin-expressing interneurons and altered differentiation patterns in astrocyte State2. In conclusion, this study provides the first evidence of abnormal drivers of FCD across different stages of ASD and their associated cellular and molecular mechanisms. These findings deepen the understanding of ASD neuropathology and offer valuable insights into treatment strategies.

Resting-state EEG network variability predicts individual working memory behavior

Even during periods of rest, the brain exhibits spontaneous activity that dynamically fluctuates across spatially distributed regions in a globally coordinated manner, which has significant cognitive implications. However, the relationship between the temporal variability of resting-state networks and working memory (WM) remains largely unexplored. This study aims to address this gap by employing an EEG-based protocol combined with fuzzy entropy. First, we identified both flexible and robust patterns of dynamic resting-state networks. Subsequently, we observed a significant positive correlation between WM performance and network variability, particularly in connections associated with the frontal, right central, and right parietal lobes. Moreover, we found that the temporal variability of network properties was positively and significantly associated with WM performance. Additionally, distinct patterns of network variability were delineated, contributing to inter-individual differences in WM abilities, with these distinctions becoming more pronounced as task demands increased. Finally, using a multivariable predictive model based on these variability metrics, we effectively predicted individual WM performances. Notably, analogous analyses conducted in the source space validated the reproducibility of the temporal variability of resting-state networks in predicting individual WM behavior at higher spatial resolution, providing more precise anatomical localization of key brain regions. These results suggest that the temporal variability of resting-state networks reflects intrinsic dynamic changes in brain organization supporting WM and can serve as an objective predictor for individual WM behaviors.

Optimizing Biophysical Large-Scale Brain Circuit Models With Deep Neural Networks

Biophysical modeling provides mechanistic insights into brain function, from single-neuron dynamics to large-scale circuit models bridging macro-scale brain activity with microscale measurements. Biophysical models are governed by biologically meaningful parameters, many of which can be experimentally measured. Some parameters are unknown, and optimizing their values can dramatically improve adherence to experimental data, significantly enhancing biological plausibility. Previous optimization methods - such as exhaustive search, gradient descent, evolutionary strategies and Bayesian optimization - require repeated, computationally expensive numerical integration of biophysical differential equations, limiting scalability to population-level datasets. Here, we introduce DELSSOME (DEep Learning for Surrogate Statistics Optimization in MEan field modeling), a framework that bypasses numerical integration by directly predicting whether model parameters produce realistic brain dynamics. When applied to the widely used feedback inhibition control (FIC) mean field model, DELSSOME achieves a 2000× speedup over Euler integration. By embedding DELSSOME within an evolutionary optimization strategy, trained models generalize to new datasets without additional tuning, enabling a 50× speedup in FIC model estimation while preserving neurobiological insights. The massive acceleration facilitates large-scale mechanistic modeling in population-level neuroscience, unlocking new opportunities for understanding brain function.

Impaired brain ability of older adults to transit and persist to latent states with well-organized structures at wakeful rest

The intrinsic brain functional network organization continuously changes with aging. By integrating spatial and temporal information, the process of how brain networks temporally reconfigure and remain well-organized spatial structure largely reflects the brain function, thereby holds the potential to capture its age-related declines. In this study, we examined the spatiotemporal brain dynamics from resting-state functional Magnetic Resonance Imaging (fMRI) data of healthy young and older adults using a Hidden Markov Model (HMM). Six brain states were generated by HMM, with the young group showing higher fractional occupancy and mean dwell time in states 1, 3, and 4 (SY1, SY2 and SY3), and the older group in states 2, 5, and 6 (SO1, SO2 and SO3). Importantly, comparisons of transition probabilities revealed that the older group showed a reduced brain ability to transition into states dominated by the younger group, as well as a diminished capacity to persist in them. Moreover, graph analysis revealed that these young-specific states exhibited higher modularity and k-coreness. Collectively, these findings suggested that the older group showed impaired brain ability of both transition into and sustain well spatially organized states. This emphasized that the temporal changes in brain state organization, rather than its static mode, could be a key biomarker for detecting age-related functional decline. These insights may pave the way for targeted interventions aimed at mitigating cognitive decline in the aging population.

Time Persistence of the FMRI Resting-State Functional Brain Networks

Time persistence is a fundamental property of many complex physical and biological systems; thus understanding the phenomenon in the brain is of high importance. Time persistence has been explored at the level of stand-alone neural time-series, but since the brain functions as an interconnected network, it is essential to examine time persistence at the network level. Changes in resting-state networks have been previously investigated using both dynamic (i.e., examining connectivity states) and static functional connectivity (i.e., test-retest reliability), but no systematic investigation of the time persistence as a network was conducted, particularly across different timescales (i.e., seconds, minutes, dozens of seconds, days) and different brain subnetworks. Additionally, individual differences in network time persistence have not been explored. Here, we devised a new framework to estimate network time persistence at both the link (i.e., connection) and node levels. In a comprehensive series analysis of three functional MRI resting-state datasets including both sexes, we established that (1) the resting-state functional brain network becomes gradually less similar to itself for the gaps up to 23 min within the run and even less similar for the gap between the days; (2) network time persistence varies across functional networks, while the sensory networks are more persistent than nonsensory networks; (3) participants show stable individual characteristic persistence, which has a genetic component; and (4) individual characteristic persistence could be linked to behavioral performance. Overall, our detailed characterization of network time persistence sheds light on the potential role of time persistence in brain functioning and cognition.

Improved whole-brain reconfiguration efficiency reveals mechanisms of speech rehabilitation in cleft lip and palate patients: an fMRI study

Introduction

Cleft lip and/or palate (CLP) patients still have severe speech disorder requiring speech rehabilitation after surgical repair. The clarity of language rehabilitation is evaluated clinically by the Language Rehabilitation Scale. However, the pattern and underlying mechanisms of functional changes in the brain are not yet clear. Recent studies suggest that the brain's reconfiguration efficiency appears to be a key feature of its network dynamics and general cognitive abilities. In this study, we compared the association between rehabilitation effects and reconfiguration efficiency.

Methods

We evaluated CLP patients with speech rehabilitation (n = 23) and without speech rehabilitation (n = 23) and normal controls (n = 25). Assessed CLP patients on the Chinese Speech Intelligibility Test Word Lists and collected fMRI data and behavioral data for all participants. We compared behavioral data and task activation levels between participants for between-group differences and calculated reconfiguration efficiencies for each task based on each participant. In patients, we correlated reconfiguration efficiency with task performance and measured the correlation between them.

Results

Behaviorally, CLP patients with rehabilitation scored significantly higher than those without rehabilitation on the Chinese Speech Intelligibility Test Word Lists. Rehabilitation caused local brain activation levels of CLP patients to converge toward those of controls, indicating rehabilitative effects on brain function. Analysis of reconfiguration efficiency across tasks at the local and whole-brain levels identified underlying recovery mechanisms. Whole-brain reconfiguration efficiency was significantly and positively correlated with task performance.

Conclusion

Our results suggest that speech rehabilitation can improve the level of language-related brain activity in CLP patients, and that reconfiguration efficiency can be used as an assessment index of language clarity to evaluate the effectiveness of brain rehabilitation in CLP patients, a finding that can provide a better understanding of the degree of brain function recovery in patients.

The control costs of human brain dynamics

The human brain is a complex system with high metabolic demands and extensive connectivity that requires control to balance energy consumption and functional efficiency over time. How this control is manifested on a whole-brain scale is largely unexplored, particularly what the associated costs are. Using the network control theory, here, we introduce a novel concept, time-averaged control energy (TCE), to quantify the cost of controlling human brain dynamics at rest, as measured from functional and diffusion MRI. Importantly, TCE spatially correlates with oxygen metabolism measures from the positron emission tomography, providing insight into the bioenergetic footing of resting-state control. Examining the temporal dimension of control costs, we find that brain state transitions along a hierarchical axis from sensory to association areas are more efficient in terms of control costs and more frequent within hierarchical groups than between. This inverse correlation between temporal control costs and state visits suggests a mechanism for maintaining functional diversity while minimizing energy expenditure. By unpacking the temporal dimension of control costs, we contribute to the neuroscientific understanding of how the brain governs its functionality while managing energy expenses.

Targeted Time-Varying Functional Connectivity

To elucidate the neurobiological basis of cognition, which is dynamic and evolving, various methods have emerged to characterise time-varying functional connectivity (FC) and track the temporal evolution of functional networks. However, given a selection of regions, many of these methods are based on modelling all possible pairwise connections, diluting a potential focus of interest on individual connections. This is the case with the hidden Markov model (HMM), which relies on region-by-region covariance matrices across all pairs of selected regions, assuming that fluctuations in FC occur across all investigated connections; that is, that all connections are locked to the same temporal pattern. To address this limitation, we introduce Targeted Time-Varying FC (T-TVFC), a variant of the HMM that explicitly models the temporal fluctuations between two sets of regions in a targeted fashion, rather than across the entire connectivity matrix. In this study, we apply T-TVFC to both simulated and real-world data. Specifically, we investigate thalamocortical connectivity, hypothesising distinct temporal signatures compared to corticocortical networks. Given the thalamus's role as a critical hub, thalamocortical connections might contain unique information about cognitive processing that could be overlooked in a coarser representation. We tested these hypotheses on high-field functional magnetic resonance data from 60 participants engaged in a reasoning task with varying complexity levels. Our findings demonstrate that the time-varying interactions captured by T-TVFC contain task-related information not detected by more traditional decompositions.

μ-Transcranial Alternating Current Stimulation Induces Phasic Entrainment and Plastic Facilitation of Corticospinal Excitability

Transcranial alternating current stimulation (tACS) has been proposed to modulate neural activity through two primary mechanisms: entrainment and neuroplasticity. The current study aimed to probe both of these mechanisms in the context of the sensorimotor μ-rhythm using transcranial magnetic stimulation (TMS) and electroencephalography (EEG) to assess entrainment of corticospinal excitability (CSE) during stimulation (i.e., online) and immediately following stimulation, as well as neuroplastic aftereffects on CSE and μ EEG power. Thirteen participants received three sessions of stimulation. Each session consisted of 90 trials of μ-tACS tailored to each participant's individual μ frequency (IMF), with each trial consisting of 16 s of tACS followed by 8 s of rest (for a total of 24 min of tACS and 12 min of rest per session). Motor-evoked potentials (MEPs) were acquired at the start and end of the session (n = 41), and additional MEPs were acquired across the different phases of tACS at three epochs within each tACS trial (n = 90 for each epoch): early online, late online and offline echo. Resting EEG activity was recorded at the start, end and throughout the tACS session. The data were then pooled across the three sessions for each participant to maximise the MEP sample size per participant. We present preliminary evidence of CSE entrainment persisting immediately beyond tACS and have also replicated the plastic CSE facilitation observed in previous μ-tACS studies, thus supporting both entrainment and neuroplasticity as mechanisms by which tACS can modulate neural activity.

A method for unsupervised learning of coherent spatiotemporal patterns in multiscale data

The unsupervised and principled diagnosis of multiscale data is a fundamental obstacle in modern scientific problems from, for instance, weather and climate prediction, neurology, epidemiology, and turbulence. Multiscale data are characterized by a combination of processes acting along multiple dimensions simultaneously, spatiotemporal scales across orders of magnitude, nonstationarity, and/or invariances such as translation and rotation. Existing methods are not well-suited to multiscale data, usually requiring supervised strategies such as human intervention, extensive tuning, or selection of ideal time periods. We present the multiresolution coherent spatio-temporal scale separation (mrCOSTS), a hierarchical and automated algorithm for the diagnosis of coherent patterns or modes in multiscale data. mrCOSTS is a variant of dynamic mode decomposition which decomposes data into bands of spatial patterns with shared time dynamics, thereby providing a robust method for analyzing multiscale data. It requires no training but instead takes advantage of the hierarchical nature of multiscale systems. We demonstrate mrCOSTS using complex multiscale datasets that are canonically difficult to analyze: 1) climate patterns of sea surface temperature, 2) electrophysiological observations of neural signals of the motor cortex, and 3) horizontal wind in the mountain boundary layer. With mrCOSTS, we trivially retrieve complex dynamics that were previously difficult to resolve while additionally extracting hitherto unknown patterns of activity embedded in the dynamics, allowing for advancing the understanding of these fields of study. This method is an important advancement for addressing the multiscale data which characterize many of the grand challenges in science and engineering.

Cognitive impairment assessed by static and dynamic changes of spontaneous brain activity during end stage renal disease patients on early hemodialysis

Background

Compared with the general population, patients with end-stage renal disease (ESRD) undergoing maintenance hemodialysis (ESHD) exhibit a higher incidence of cognitive impairment. Early identification of cognitive impairment in these patients is crucial for reducing disability and mortality rates. Examining the characteristics of static and dynamic regional spontaneous activities in ESHD cases may provide insights into neuropathological damage in these patients.

Methods

Resting-state functional magnetic resonance images were acquired from 40 patients with early ESHD (3 or 4 times/week for more than 30 days but less than 12 months) and 31 healthy matched controls. Group differences in regional static and dynamic regional homogeneity (ReHo) were identified, and correlations examined with clinical variables, including neuropsychological scale scores, while controlling for covariates. Receiving operating characteristic (ROC) curve analyses were conducted to assess the accuracy of ReHo abnormalities for predicting cognitive decline among early ESHD.

Results

The ESHD group exhibited significantly reduced static and dynamic ReHo in the temporal and parietal lobes, including regions involved in basal ganglia-thalamus-cortex circuits, the default mode network, and ventral attentional network. Several static and dynamic ReHo abnormalities (including those in the right parietal and left middle temporal gyrus) were significantly correlated with neurocognitive scale scores. In addition, the dynamic ReHo value of the left superior temporal gyrus was positively correlated with depression scale scores. Comparing the ROC curve area revealed that numerous brain regions with altered ReHo can effectively distinguish between patients with ESHD and those without cognitive impairment.

Conclusion

Our study found that spontaneous activity alterations located in the basal ganglia-thalamus-cortex circuit, default mode network, and ventral attentional network are associated with the severity of cognitive deficits and negative emotion in early ESHD patients. These findings provide further insight into the relationship between cognitive impairment and underlying neuropathophysiological mechanisms underlying the interplay between the kidneys and the nervous system in ESRD patients, and provide further possibilities for developing effective clinical intervention measures.

Multi-channel spatio-temporal graph attention contrastive network for brain disease diagnosis

Dynamic brain networks (DBNs) can capture the intricate connections and temporal evolution among brain regions, becoming increasingly crucial in the diagnosis of neurological disorders. However, most existing researches tend to focus on isolated brain network sequence segmented by sliding windows, and they are difficult to effectively uncover the higher-order spatio-temporal topological pattern in DBNs. Meantime, it remains a challenge to utilize the structure connectivity prior in the DBNs analysis. To address these problems, we propose a multi-channel spatio-temporal graph attention contrastive network for DBNs analysis. Specifically, we first construct dynamic brain functional networks from fMRI data with sliding windows, and embed the structural connectivity derived from diffusion tensor imaging (DTI) to the dynamic functional connectivity graph representation to construct multi-modal brain network. Second, we develop a multi-channel spatial attention contrastive network to extract topological features from the brain network within each time window. This network incorporates an intra-window graph contrastive constraint to enhance the discriminative ability of the extracted features. Moreover, temporal dependencies across windows are captured by integrating feature embeddings through a self-attention mechanism, and the inter-window recurrent contrastive constraint is devised to extract higher-order spatio-temporal topological features. Finally, a multi-layer perceptron (MLP) is used to classify the brain networks. Experiments on epilepsy and ADNI datasets show that our method outperforms several state-of-the-art approaches in diagnosing performance, and it provides discriminative graph features for related brain diseases.

A semantic strength and neural correlates in developmental dyslexia

Introduction

Most studies of dyslexia focus on domains of impairment (e.g., reading and phonology, among others), but few examine possible strengths. In the present study, we investigated semantic fluency as a cognitive strength in English-speaking children with dyslexia aged 8-13.

Methods

Ninety-seven children with dyslexia completed tests of letter and semantic verbal fluency, standardized measures of reading and cognitive functions, and task-free resting-state functional magnetic resonance imaging (rs-fMRI). First, we adjusted performance on semantic fluency by letter fluency and created a residual score that was used to separate participants into high (residual >0) or average (residual <0) semantic performance groups. We then employed a psycholinguistic clustering and switching approach to the semantic fluency task and performed dynamic task-free rs-fMRI connectivity analysis to reveal group differences in brain dynamics.

Results

High and average semantic fluency groups were well-matched on demographics and letter fluency but differed on their psycholinguistic patterns on the semantic fluency task. The high semantic fluency group, compared to the average semantic fluency group, produced a higher number of words within each cluster, a higher max cluster size, and a higher number of switches. Differential dynamic rs-fMRI connectivity (shorter average dwell time and greater brain state switches) was observed between the high and average groups in a large-scale bilateral frontal-temporal-occipital network.

Discussion

These data demonstrate that a subgroup of children with dyslexia perform above average on semantic fluency tasks and their performance is strongly linked to distinct psycholinguistic patterns and differences in a task-free resting-state brain network, which includes regions previously implicated in semantic processing. This work highlights that inter-individual differences should be taken into account in dyslexia and reveals a cognitive area of strength for some children with dyslexia that could be leveraged for reading interventions.

Cognitive and psychiatric relevance of dynamic functional connectivity states in a large (N > 10,000) children population

Children's brains dynamically adapt to the stimuli from the internal state and the external environment, allowing for changes in cognitive and mental behavior. In this work, we performed a large-scale analysis of dynamic functional connectivity (DFC) in children aged 9~11 years, investigating how brain dynamics relate to cognitive performance and mental health at an early age. A hybrid independent component analysis framework was applied to the Adolescent Brain Cognitive Development (ABCD) data containing 10,988 children. We combined a sliding-window approach with k-means clustering to identify five brain states with distinct DFC patterns. Interestingly, the occurrence of a strongly connected state with the most within-network synchrony and the anticorrelations between networks, especially between the sensory networks and between the cerebellum and other networks, was negatively correlated with cognitive performance and positively correlated with dimensional psychopathology in children. Meanwhile, opposite relationships were observed for a DFC state showing integration of sensory networks and antagonism between default-mode and sensorimotor networks but weak segregation of the cerebellum. The mediation analysis further showed that attention problems mediated the effect of DFC states on cognitive performance. This investigation unveils the neurological underpinnings of DFC states, which suggests that tracking the transient dynamic connectivity may help to characterize cognitive and mental problems in children and guide people to provide early intervention to buffer adverse influences.

TR(Acking) Individuals Down: Exploring the Effect of Temporal Resolution in Resting-State Functional MRI Fingerprinting

Functional brain fingerprinting has emerged as an influential tool to quantify reliability in neuroimaging studies and to identify cognitive biomarkers in both healthy and clinical populations. Recent studies have revealed that brain fingerprints reside in the timescale-specific functional connectivity of particular brain regions. However, the impact of the acquisition's temporal resolution on fingerprinting remains unclear. In this study, we examine for the first time the reliability of functional fingerprinting derived from resting-state functional MRI (rs-fMRI) with different whole-brain temporal resolutions (TR = 0.5, 0.7, 1, 2, and 3 s) in a cohort of 20 healthy volunteers. Our findings indicate that subject identifiability within a fixed TR is successful across different temporal resolutions, with the highest identifiability observed at TR 0.5 and 3 s (TR(s)/identifiability(%): 0.5/64; 0.7/47; 1/44; 2/44; 3/56). We discuss this observation in terms of protocol-specific effects of physiological noise aliasing. We further show that, irrespective of TR, associative brain areas make an higher contribution to subject identifiability (functional connections with highest mean ICC: within subcortical network [SUB; ICC = 0.0387], within default mode network [DMN; ICC = 0.0058]; between DMN and somato-motor [SM] network [ICC = 0.0013]; between ventral attention network [VA] and DMN [ICC = 0.0008]; between VA and SM [ICC = 0.0007]), whereas sensory-motor regions become more influential when integrating data from different TRs (functional connections with highest mean ICC: within fronto-parietal network [ICC = 0.382], within dorsal attention network [DA; ICC = 0.373]; within SUB [ICC = 0.367]; between visual network [VIS] and DA [ICC = 0.362]; within VIS [ICC = 0.358]). We conclude that functional connectivity fingerprinting derived from rs-fMRI holds significant potential for multicentric studies also employing protocols with different temporal resolutions. However, it remains crucial to consider fMRI signal's sampling rate differences in subject identifiability between data samples, in order to improve reliability and generalizability of both whole-brain and specific functional networks' results. These findings contribute to a better understanding of the practical application of functional connectivity fingerprinting, and its implications for future neuroimaging research.

Alterations of triple network dynamic connectivity and repetitive behaviors after mini-basketball training program in children with autism spectrum disorder

Physical exercise has been demonstrated to effectively mitigate repetitive behaviors in children with autism spectrum disorder (ASD), but the underlying dynamic brain network mechanisms are poorly understood. The triple network model consists of three brain networks that jointly regulate cognitive and emotional processes and is considered to be the core network underlying the aberrant manifestations of ASD. This study investigated whether a mini-basketball training program (MBTP) could alter repetitive behaviors and the dynamic connectivity of the triple network. 28 male children with ASD were scanned twice with resting-state functional MRI and assessed for repetitive behaviors using the repetitive behavior scale (RBS-R). 15 children in the exercise group participated in a 12-week MBTP, while 13 in the control group maintained their regular routines. The feature of Dynamic independent component analysis (dyn-ICA) is its ability to capture the rate of change in connectivity between brain regions. In this study, it was specifically employed to examine the triple network dynamic connectivity in both groups. Compared to the control group, the exercise group exhibited distinct dynamic connectivity patterns in two networks: Network 1 involved cross-network dynamic connectivity changes within the triple network, and Network 2 pertained to dynamic connectivity alterations within the default mode network. Furthermore, a reduction in the RBS-R Total score was observed in the exercise group, reflecting improvements in self-injurious behavior and restricted behavior. Correlation analysis revealed that the amelioration of repetitive behaviors was associated with enhanced dynamic connectivity in parts of the triple network. These findings suggest that MBTP can improve repetitive behaviors in ASD children and is linked to changes in triple network dynamic connectivity.

Dynamic reconfiguration of aperiodic brain activity supports cognitive functioning in epilepsy: A neural fingerprint identification

Temporal lobe epilepsy (TLE) is characterized by alterations of brain dynamic on a large-scale associated with altered cognitive functioning. Here, we aimed at analyzing dynamic reconfiguration of brain activity, using the neural fingerprint approach, to delineate subject-specific characteristics and their cognitive correlates in TLE. We collected 10 min of resting-state scalp-electroencephalography (EEG, 128 channels), free from epileptiform activity, from 68 TLE patients and 34 controls. The functional network was defined by the spatiotemporal spreading, across cortical regions, of aperiodic bursts of signals' amplitude (neuronal avalanches), encapsulated into the avalanche transition matrix (ATM). The fingerprint analysis of the ATMs revealed more stereotyped patterns in patients with respect to controls, with the greatest stereotypy in bilateral TLE. Finally, indices extracted from individual patterns of brain dynamics correlated with the memory impairment in unilateral TLE. This study helped understand how dynamic brain activity in TLE is shaped and provided patient-specific indices useful for personalized medicine.

Developmental dynamics of brain network modularity and temporal co-occurrence diversity in childhood

OBJECTIVE

Brain development during childhood involves significant structural, functional, and connectivity changes, reflecting the interplay between modularity, information interaction, and functional segregation. This study aims to understand the dynamic properties of brain connectivity and their impact on cognitive development, focusing on temporal co-occurrence diversity patterns.

METHODS

We recruited 481 children aged 6 to 12 years from the Healthy Brain Network database. Functional MRI data were used to construct dynamic functional connectivity matrices with a sliding window approach. Modular structures were identified using multilayer network community detection, and the Dagum Gini coefficient decomposition technique, which uniquely allows for multi-faceted exploration of modular temporal co-occurrence diversities, quantified these diversities. Mediation analysis assessed the impact on small-world properties.

RESULTS

Temporal co-occurrence diversity in brain networks increased with age, especially in the default mode, frontoparietal, and salience networks. These changes were driven by disparities within and between communities. The small-world coefficient increased with age, indicating improved information processing efficiency. To validate the impact of changes in spatiotemporal interaction disparities during childhood on information transmission within brain networks, we used mediation analysis to verify its effect on alterations in small-world properties.

CONCLUSION

This study highlights the critical developmental changes in brain modularity and spatiotemporal interaction patterns during childhood, emphasizing their role in cognitive maturation. These insights into neural mechanisms can inform the diagnosis and intervention of developmental disorders.

Altered Static and Dynamic Functional Network Connectivity and Combined Machine Learning in Stroke

Stroke is a condition characterized by damage to the cerebral vasculature from various causes, resulting in focal or widespread brain tissue damage. Prior neuroimaging research has demonstrated that individuals with stroke present structural and functional brain abnormalities, evident through disruptions in motor, cognitive, and other vital functions. Nevertheless, there is a lack of studies on alterations in static and dynamic functional network connectivity in the brains of stroke patients. Fifty stroke patients and 50 healthy controls (HCs) underwent resting-state functional magnetic resonance imaging (rs-fMRI) scanning. Initially, the independent component analysis (ICA) method was utilized to extract the resting-state network (RSN). Subsequently, the disparities in static functional network connectivity both within and between networks among the two groups were computed and juxtaposed. Following this, five consistent and robust dynamic functional network connectivity (dFNC) states were derived by integrating the sliding time window method with k-means cluster analysis, and the distinctions in dFNC between the groups across different states, along with the intergroup variations in three dynamic temporal metrics, were assessed. Finally, a support vector machine (SVM) approach was employed to discriminate stroke patients from HCs using FC and FNC as classification features. Comparing the stroke group to the healthy control (HC) group, the stroke group exhibited reduced intra-network functional connectivity (FC) in the right superior temporal gyrus of the ventral attention network (VAN), the left calcarine of the visual network (VN), and the left precuneus of the default mode network (DMN). Regarding static functional network connectivity (FNC), we identified increased connectivity between the executive control network (ECN) and dorsal attention network (DAN), salience network (SN) and DMN, SN-ECN, and VN-ECN, along with decreased connectivity between DAN-DAN, ECN-SN, SN-SN, and DAN-VN between the two groups. Noteworthy differences in dynamic FNC (dFNC) were observed between the groups in states 3 to 5. Moreover, stroke patients demonstrated a significantly higher proportion of time and longer mean dwell time in state 4, alongside a decreased proportion of time in state 5 compared to HC. Finally, utilizing FC and FNC as features, stroke patients could be distinguished from HC with an accuracy exceeding 70% and an area under the curve ranging from 0.8284 to 0.9364. In conclusion, our study reveals static and dynamic changes in large-scale brain networks in stroke patients, potentially linked to abnormalities in visual, cognitive, and motor functions. This investigation offers valuable insights into the neural mechanisms underpinning the functional deficits observed in stroke, thereby aiding in the diagnosis and development of targeted therapeutic interventions for affected individuals.

Long-term mindfulness meditation increases occurrence of sensory and attention brain states

Interest has been growing in the use of mindfulness meditation (MM) as a therapeutic practice, as accumulating evidence highlights its potential to effectively address a range of mental conditions. While many fMRI studies focused on neural activation and functional connectivity during meditation, the impact of long-term MM practice on spontaneous brain activity, and on the expression of resting state networks over time, remains unclear. Here, intrinsic functional network dynamics were compared between experienced meditators and meditation-naïve participants during rest. Our analysis revealed that meditators tend to spend more time in two brain states that involve synchrony among cortical regions associated with sensory perception. Conversely, a brain state involving frontal areas associated with higher cognitive functions was detected less frequently in experienced meditators. These findings suggest that, by shifting attention toward enhanced sensory and embodied processing, MM effectively modulates the expression of functional network states at rest. These results support the suggested lasting effect of long-term MM on the modulation of resting-state networks, reinforcing its therapeutic potential for disorders characterized by imbalanced network dynamics. Moreover, this study reinforces the utility of analytic approaches from dynamical systems theory to extend current knowledge regarding brain activity and evaluate its response to interventions.

State-dependent inter-network functional connectivity development in neonatal brain from the developing human connectome project

Although recent studies have consistently reported the emergence of resting-state networks in early infancy, the changes in inter-network functional connectivity with age are controversial and the alterations in its dynamics remain unclear at this stage. This study aimed to investigate dynamic functional network connectivity (dFNC) using resting-state functional MRI in 244 full-term (age: 37-44 weeks) and 36 preterm infants (age: 37-43 weeks) from the dHCP dataset. We evaluated whether early dFNC exhibits age-dependent changes and is influenced by preterm birth. Gestational age (GA) and postnatal age (PNA) showed different effects on variance of FNC change over time during fMRI scan in resting-state networks, especially among high-order association networks. These variances were significantly reduced by preterm birth. Moreover, two states of weakly-connected (State Ⅰ) and strongly-connected (State Ⅱ) FNC were identified. The fraction window and dwell time in State Ⅰ, and the transition from State Ⅱ to State Ⅰ, all showed significantly negative correlations with both GA and PNA. Preterm-born infants spent a longer time in the weakly-connected state compared to term-born infants. These findings suggest a state-dependent development of dynamic FNC across brain networks in the early stages, gradually reconfiguring towards a more flexible and dynamic system with stronger connections.

Symmetry breaking organizes the brain's resting state manifold

Spontaneously fluctuating brain activity patterns that emerge at rest have been linked to the brain's health and cognition. Despite detailed descriptions of the spatio-temporal brain patterns, our understanding of their generative mechanism is still incomplete. Using a combination of computational modeling and dynamical systems analysis we provide a mechanistic description of the formation of a resting state manifold via the network connectivity. We demonstrate that the symmetry breaking by the connectivity creates a characteristic flow on the manifold, which produces the major data features across scales and imaging modalities. These include spontaneous high-amplitude co-activations, neuronal cascades, spectral cortical gradients, multistability, and characteristic functional connectivity dynamics. When aggregated across cortical hierarchies, these match the profiles from empirical data. The understanding of the brain's resting state manifold is fundamental for the construction of task-specific flows and manifolds used in theories of brain function. In addition, it shifts the focus from the single recordings towards the brain's capacity to generate certain dynamics characteristic of health and pathology.

Reconfiguration of brain network dynamics in bipolar disorder: a hidden Markov model approach

Bipolar disorder (BD) is a neuropsychiatric disorder characterized by severe disturbance and fluctuation in mood. Dynamic functional connectivity (dFC) has the potential to more accurately capture the evolving processes of emotion and cognition in BD. Nevertheless, prior investigations of dFC typically centered on larger time scales, limiting the sensitivity to transient changes. This study employed hidden Markov model (HMM) analysis to delve deeper into the moment-to-moment temporal patterns of brain activity in BD. We utilized resting-state functional magnetic resonance imaging (rs-fMRI) data from 43 BD patients and 51 controls to evaluate the altered dynamic spatiotemporal architecture of the whole-brain network and identify unique activation patterns in BD. Additionally, we investigated the relationship between altered brain dynamics and structural disruption through the ridge regression (RR) algorithm. The results demonstrated that BD spent less time in a hyperconnected state with higher network efficiency and lower segregation. Conversely, BD spent more time in anticorrelated states featuring overall negative correlations, particularly among pairs of default mode network (DMN) and sensorimotor network (SMN), DMN and insular-opercular ventral attention networks (ION), subcortical network (SCN) and SMN, as well as SCN and ION. Interestingly, the hypoactivation of the cognitive control network in BD may be associated with the structural disruption primarily situated in the frontal and parietal lobes. This study investigated the dynamic mechanisms of brain network dysfunction in BD and offered fresh perspectives for exploring the physiological foundation of altered brain dynamics.

Contrasting topologies of synchronous and asynchronous functional brain networks

We generated asynchronous functional networks (aFNs) using a novel method called optimal causation entropy and compared aFN topology with the correlation-based synchronous functional networks (sFNs), which are commonly used in network neuroscience studies. Functional magnetic resonance imaging (fMRI) time series from 212 participants of the National Consortium on Alcohol and Neurodevelopment in Adolescence study were used to generate aFNs and sFNs. As a demonstration of how aFNs and sFNs can be used in tandem, we used multivariate mixed effects models to determine whether age interacted with node efficiency to influence connection probabilities in the two networks. After adjusting for differences in network density, aFNs had higher global efficiency but lower local efficiency than the sFNs. In the aFNs, nodes with the highest outgoing global efficiency tended to be in the brainstem and orbitofrontal cortex. aFN nodes with the highest incoming global efficiency tended to be members of the default mode network in sFNs. Age interacted with node global efficiency in aFNs and node local efficiency in sFNs to influence connection probability. We conclude that the sFN and aFN both offer information about functional brain connectivity that the other type of network does not.

Recent trends in multiple metrics and multimodal analysis for neural activity and pupillometry

Recent studies focusing on neural activity captured by neuroimaging modalities have provided various metrics for elucidating the functional networks and dynamics of the entire brain. Functional magnetic resonance imaging (fMRI) can depict spatiotemporal functional neural networks and dynamic characteristics due to its excellent spatial resolution. However, its temporal resolution is limited. Neuroimaging modalities such as electroencephalography (EEG) and magnetoencephalography (MEG), which have higher temporal resolutions, are utilized for multi-temporal scale and multi-frequency-band analyzes. With this advantage, numerous EEG/MEG-bases studies have revealed the frequency-band specific functional networks involving dynamic functional connectivity and multiple temporal-scale time-series patterns of neural activity. In addition to analyzing neural data, the examination of behavioral data can unveil additional aspects of brain activity through unimodal and multimodal data analyzes performed using appropriate integration techniques. Among the behavioral data assessments, pupillometry can provide comprehensive spatial-temporal-specific features of neural activity. In this perspective, we summarize the recent progress in the development of metrics for analyzing neural data obtained from neuroimaging modalities such as fMRI, EEG, and MEG, as well as behavioral data, with a special focus on pupillometry data. First, we review the typical metrics of neural activity, emphasizing functional connectivity, complexity, dynamic functional connectivity, and dynamic state transitions of whole-brain activity. Second, we examine the metrics related to the time-series data of pupillary diameters and discuss the possibility of multimodal metrics that combine neural and pupillometry data. Finally, we discuss future perspectives on these multiple and multimodal metrics.

Coactivation pattern analysis reveals altered whole-brain functional transient dynamics in autism spectrum disorder

Recent studies on autism spectrum disorder (ASD) have identified recurring states dominated by similar coactivation pattern (CAP) and revealed associations between dysfunction in seed-based large-scale brain networks and clinical symptoms. However, the presence of abnormalities in moment-to-moment whole-brain dynamics in ASD remains uncertain. In this study, we employed seed-free CAP analysis to identify transient brain activity configurations and investigate dynamic abnormalities in ASD. We utilized a substantial multisite resting-state fMRI dataset consisting of 354 individuals with ASD and 446 healthy controls (HCs, from HC groups and 2). CAP were generated from a subgroup of all HC subjects (HC group 1) through temporal K-means clustering, identifying four CAPs. These four CAPs exhibited either the activation or inhibition of the default mode network (DMN) and were grouped into two pairs with opposing spatial CAPs. CAPs for HC group 2 and ASD were identified by their spatial similarity to those for HC group 1. Compared with individuals in HC group 2, those with ASD spent more time in CAPs involving the ventral attention network but less time in CAPs related to executive control and the dorsal attention network. Support vector machine analysis demonstrated that the aberrant dynamic characteristics of CAPs achieved an accuracy of 74.87% in multisite classification. In addition, we used whole-brain dynamics to predict symptom severity in ASD. Our findings revealed whole-brain dynamic functional abnormalities in ASD from a single transient perspective, emphasizing the importance of the DMN in abnormal dynamic functional activity in ASD and suggesting that temporally dynamic techniques offer novel insights into time-varying neural processes.

Reduced brain network segregation in alcohol use disorder: Associations with neurocognition

The human brain consists of functionally segregated networks, characterized by strong connections among regions belonging to the same network and weak connections between those of different networks. Alcohol use disorder (AUD) is associated with premature brain aging and neurocognitive impairments. Given the link between decreased brain network segregation and age-related cognitive decline, we hypothesized lower brain segregation in patients with AUD than healthy controls (HCs). Thirty AUD patients (9 females, 21 males) and 61 HCs (35 females, 26 males) underwent resting-state functional MRI (rs-fMRI), whose data were processed to assess segregation within the brain sensorimotor and association networks. We found that, compared to HCs, AUD patients had significantly lower segregation in both brain networks as well as poorer performance on a spatial working memory task. In the HC group, brain network segregation correlated negatively with age and positively with spatial working memory. Our findings suggest reduced brain network segregation in individuals with AUD that may contribute to cognitive impairment and is consistent with premature brain aging in this population.

Studying time-resolved functional connectivity via communication theory: on the complementary nature of phase synchronization and sliding window Pearson correlation

Time-resolved functional connectivity (trFC) assesses the time-resolved coupling between brain regions using functional magnetic resonance imaging (fMRI) data. This study aims to compare two techniques used to estimate trFC to investigate their similarities and differences when applied to fMRI data. These techniques are the sliding window Pearson correlation (SWPC), an amplitude-based approach, and phase synchronization (PS), a phase-based technique. To accomplish our objective, we used resting-state fMRI data from the Human Connectome Project (HCP) with 827 subjects (repetition time: 0.72s) and the Function Biomedical Informatics Research Network (fBIRN) with 311 subjects (repetition time: 2s), which included 151 schizophrenia patients and 160 controls. Our simulations reveal distinct strengths in two connectivity methods: SWPC captures high-magnitude, low-frequency connectivity, while PS detects low-magnitude, high-frequency connectivity. Stronger correlations between SWPC and PS align with pronounced fMRI oscillations. For fMRI data, higher correlations between SWPC and PS occur with matched frequencies and smaller SWPC window sizes (~30s), but larger windows (~88s) sacrifice clinically relevant information. Both methods identify a schizophrenia-associated brain network state but show different patterns: SWPC highlights low anti-correlations between visual, subcortical, auditory, and sensory-motor networks, while PS shows reduced positive synchronization among these networks. In sum, our findings underscore the complementary nature of SWPC and PS, elucidating their respective strengths and limitations without implying the superiority of one over the other.

The distinct functional brain network and its association with psychotic symptom severity in men with methamphetamine-associated psychosis

BACKGROUND

Individuals using methamphetamine (METH) may experience psychosis, which usually requires aggressive treatment. Studies of the neural correlates of METH-associated psychosis (MAP) have focused predominantly on the default mode network (DMN) and cognitive control networks. We hypothesize that METH use alters global functional connections in resting-state brain networks and that certain cross-network connections could be associated with psychosis.

METHODS

We recruited 24 healthy controls (CRL) and 54 men with METH use disorder (MUD) who were then divided into 25 without psychosis (MNP) and 29 with MAP. Psychotic symptom severity was assessed using the Positive and Negative Syndrome Scale (PANSS), evaluating (1) large-scale alterations in regional-wise resting-state functional connectivity (rsFC) across 11 brain networks and (2) associations between rsFC and psychotic symptom severity.

RESULTS

The MUD group exhibited greater rsFC between the salience network (SN)-DMN, and subcortical network (SCN)-DMN compared to the CRL group. The MAP group exhibited decreased rsFC in the sensory/somatomotor network (SMN)-dorsal attention network (DAN), SMN-ventral attention network (VAN), SMN-SN, and SMN-auditory network (AN), whereas the MNP group exhibited increased rsFC in the SMN-DMN and the frontoparietal network (FPN)-DMN compared to CRL. Additionally, the MAP group exhibited decreased rsFC strength between the SMN-DMN, SMN-AN, SMN-FPN, and DMN-VAN compared to the MNP group. Furthermore, across the entire MUD group, the PANSS-Positive subscale was negatively correlated with the DMN-FPN and FPN-SMN, while the PANSS-Negative subscale was negatively correlated with the DMN-AN and SMN-SMN.

CONCLUSION

MUD is associated with altered global functional connectivity. In addition, the MAP group exhibits a different brain functional network compared to the MNP group.

An information-theoretic framework for conditional causality analysis of brain networks

Identifying directed network models for multivariate time series is a ubiquitous problem in data science. Granger causality measure (GCM) and conditional GCM (cGCM) are widely used methods for identifying directed connections between time series. Both GCM and cGCM have frequency-domain formulations to characterize the dependence of time series in the spectral domain. However, the original methods were developed using a heuristic approach without rigorous theoretical explanations. To overcome the limitation, the minimum-entropy (ME) estimation approach was introduced in our previous work (Ning & Rathi, 2018) to generalize GCM and cGCM with more rigorous frequency-domain formulations. In this work, this information-theoretic framework is further generalized with three formulations for conditional causality analysis using techniques in control theory, such as state-space representations and spectral factorizations. The three conditional causal measures are developed based on different ME estimation procedures that are motivated by equivalent formulations of the classical minimum mean squared error estimation method. The relationship between the three formulations of conditional causality measures is analyzed theoretically. Their performance is evaluated using simulations and real neuroimaging data to analyze brain networks. The results show that the proposed methods provide more accurate network structures than the original approach.

The Neural Correlates of Alcohol Approach Bias - New Insights from a Whole-Brain Network Analysis Perspective

Alcohol approach bias, a tendency to approach rather than to avoid alcohol and alcohol-related cues regardless of associated negative consequences, is an emerging key characteristic of alcohol use disorder (AUD). Reaction times from the Approach-Avoidance Task (AAT) can be used to quantify alcohol approach bias. However, only a handful of studies have investigated the neural correlates of implicit alcohol approach behavior. Graph Theory Analysis (GTA) metrics, specifically, weighted global efficiency (wGE), community detection, and inter-community information integration were used to analyze functional magnetic resonance imaging (fMRI) data of an in-scanner version of the AAT from 31 heavy drinking Veterans with AUD (HDV) engaged in out-patient treatment and 19 healthy Veterans as controls (HC). We found a functional imprint of alcohol approach bias in HDVs. HDVs showed significantly higher wGE values for approaching than for avoiding alcohol, indicating that their brain was more efficiently organized or functionally set to approach alcohol in the presence to alcohol-related external cues. In contrast, Brains of HCs did not show such a processing advantage for either the approach or avoid condition. Further post-hoc analyses revealed that HDVs and HCs differed in how they implemented top-down control when approaching/avoiding alcohol and in how the fronto-parietal control network interacted with subsystems of the default mode network. These findings contribute to understanding the complex neural underpinnings of alcohol approach bias and lay the foundation for developing more potent and targeted interventions to modify these neural patterns in AUD patients.

Cortical sites critical to language function act as connectors between language subnetworks

Historically, eloquent functions have been viewed as localized to focal areas of human cerebral cortex, while more recent studies suggest they are encoded by distributed networks. We examined the network properties of cortical sites defined by stimulation to be critical for speech and language, using electrocorticography from sixteen participants during word-reading. We discovered distinct network signatures for sites where stimulation caused speech arrest and language errors. Both demonstrated lower local and global connectivity, whereas sites causing language errors exhibited higher inter-community connectivity, identifying them as connectors between modules in the language network. We used machine learning to classify these site types with reasonably high accuracy, even across participants, suggesting that a site's pattern of connections within the task-activated language network helps determine its importance to function. These findings help to bridge the gap in our understanding of how focal cortical stimulation interacts with complex brain networks to elicit language deficits.

Decreased GABA levels during development result in increased connectivity in the larval zebrafish tectum

γ-aminobutyric acid (GABA) is an abundant neurotransmitter that plays multiple roles in the vertebrate central nervous system (CNS). In the early developing CNS, GABAergic signaling acts to depolarize cells. It mediates several aspects of neural development, including cell proliferation, neuronal migration, neurite growth, and synapse formation, as well as the development of critical periods. Later in CNS development, GABAergic signaling acts in an inhibitory manner when it becomes the predominant inhibitory neurotransmitter in the brain. This behavior switch occurs due to changes in chloride/cation transporter expression. Abnormalities of GABAergic signaling appear to underlie several human neurological conditions, including seizure disorders. However, the impact of reduced GABAergic signaling on brain development has been challenging to study in mammals. Here we take advantage of zebrafish and light sheet imaging to assess the impact of reduced GABAergic signaling on the functional circuitry in the larval zebrafish optic tectum. Zebrafish have three gad genes: two gad1 paralogs known as gad1a and gad1b, and gad2. The gad1b and gad2 genes are expressed in the developing optic tectum. Null mutations in gad1b significantly reduce GABA levels in the brain and increase electrophysiological activity in the optic tectum. Fast light sheet imaging of genetically encoded calcium indicator (GCaMP)-expressing gab1b null larval zebrafish revealed patterns of neural activity that were different than either gad1b-normal larvae or gad1b-normal larvae acutely exposed to pentylenetetrazole (PTZ). These results demonstrate that reduced GABAergic signaling during development increases functional connectivity and concomitantly hyper-synchronization of neuronal networks.

The brain network hub degeneration in Alzheimer's disease

Alzheimer's disease (AD) has been conceptualized as a syndrome of brain network dysfunction. Recent imaging connectomics studies have provided unprecedented opportunities to map structural and functional brain networks in AD. By reviewing molecular, imaging, and computational modeling studies, we have shown that highly connected brain hubs are primarily distributed in the medial and lateral prefrontal, parietal, and temporal regions in healthy individuals and that the hubs are selectively and severely affected in AD as manifested by increased amyloid-beta deposition and regional atrophy, hypo-metabolism, and connectivity dysfunction. Furthermore, AD-related hub degeneration depends on the imaging modality with the most notable degeneration in the medial temporal hubs for morphological covariance networks, the prefrontal hubs for structural white matter networks, and in the medial parietal hubs for functional networks. Finally, the AD-related hub degeneration shows metabolic, molecular, and genetic correlates. Collectively, we conclude that the brain-network-hub-degeneration framework is promising to elucidate the biological mechanisms of network dysfunction in AD, which provides valuable information on potential diagnostic biomarkers and promising therapeutic targets for the disease.

Cortical network reconfiguration aligns with shifts of basal ganglia and cerebellar influence

Mammalian functional architecture flexibly adapts, transitioning from integration where information is distributed across the cortex, to segregation where information is focal in densely connected communities of brain regions. This flexibility in cortical brain networks is hypothesized to be driven by control signals originating from subcortical pathways, with the basal ganglia shifting the cortex towards integrated processing states and the cerebellum towards segregated states. In a sample of healthy human participants (N=242), we used fMRI to measure temporal variation in global brain networks while participants performed two tasks with similar cognitive demands (Stroop and Multi-Source Inference Task (MSIT)). Using the modularity index, we determined cortical networks shifted from integration (low modularity) at rest to high modularity during easier i.e. congruent (segregation). Increased task difficulty (incongruent) resulted in lower modularity in comparison to the easier counterpart indicating more integration of the cortical network. Influence of basal ganglia and cerebellum was measured using eigenvector centrality. Results correlated with decreases and increases in cortical modularity respectively, with only the basal ganglia influence preceding cortical integration. Our results support the theory the basal ganglia shifts cortical networks to integrated states due to environmental demand. Cerebellar influence correlates with shifts to segregated cortical states, though may not play a causal role.

Evolving brain network dynamics in early childhood: Insights from modular graph metrics

Modular dynamic graph theory metrics effectively capture the patterns of dynamic information interaction during human brain development. While existing research has employed modular algorithms to examine the overall impact of dynamic changes in community structure throughout development, there is a notable gap in understanding the cross-community dynamic changes within different functional networks during early childhood and their potential contributions to the efficiency of brain information transmission. This study seeks to address this gap by tracing the trajectories of cross-community structural changes within early childhood functional networks and modeling their contributions to information transmission efficiency. We analyzed 194 functional imaging scans from 83 children aged 2 to 8 years, who participated in passive viewing functional magnetic resonance imaging sessions. Utilizing sliding windows and modular algorithms, we evaluated three spatiotemporal metrics-temporal flexibility, spatiotemporal diversity, and within-community spatiotemporal diversity-and four centrality metrics: within-community degree centrality, eigenvector centrality, between-community degree centrality, and between-community eigenvector centrality. Mixed-effects linear models revealed significant age-related increases in the temporal flexibility of the default mode network (DMN), executive control network (ECN), and salience network (SN), indicating frequent adjustments in community structure within these networks during early childhood. Additionally, the spatiotemporal diversity of the SN also displayed significant age-related increases, highlighting its broad pattern of cross-community dynamic interactions. Conversely, within-community spatiotemporal diversity in the language network exhibited significant age-related decreases, reflecting the network's gradual functional specialization. Furthermore, our findings indicated significant age-related increases in between-community degree centrality across the DMN, ECN, SN, language network, and dorsal attention network, while between-community eigenvector centrality also increased significantly for the DMN, ECN, and SN. However, within-community eigenvector centrality remained stable across all functional networks during early childhood. These results suggest that while centrality of cross-community interactions in early childhood functional networks increases, centrality within communities remains stable. Finally, mediation analysis was conducted to explore the relationships between age, brain dynamic graph metrics, and both global and local efficiency based on community structure. The results indicated that the dynamic graph metrics of the SN primarily mediated the relationship between age and the decrease in global efficiency, while those of the DMN, language network, ECN, dorsal attention network, and SN primarily mediated the relationship between age and the increase in local efficiency. This pattern suggests a developmental trajectory in early childhood from global information integration to local information segregation, with the SN playing a pivotal role in this transformation. This study provides novel insights into the mechanisms by which early childhood brain functional development impacts information transmission efficiency through cross-community adjustments in functional networks.

Contrasting topologies of synchronous and asynchronous functional brain networks

We generated asynchronous functional networks (aFNs) using a novel method called optimal causation entropy (oCSE) and compared aFN topology to the correlation-based synchronous functional networks (sFNs) which are commonly used in network neuroscience studies. Functional magnetic resonance imaging (fMRI) time series from 212 participants of the National Consortium on Alcohol and NeuroDevelopment in Adolescence (NCANDA) study were used to generate aFNs and sFNs. As a demonstration of how aFNs and sFNs can be used in tandem, we used multivariate mixed effects models to determine whether age interacted with node efficiency to influence connection probabilities in the two networks. After adjusting for differences in network density, aFNs had higher global efficiency but lower local efficiency than the sFNs. In the aFNs, nodes with the highest outgoing global efficiency tended to be in the brainstem and orbitofrontal cortex. aFN nodes with the highest incoming global efficiency tended to be members of the Default Mode Network (DMN) in sFNs. Age interacted with node global efficiency in aFNs and node local efficiency in sFNs to influence connection probability. We conclude that the sFN and aFN both offer information about functional brain connectivity which the other type of network does not.

Response inhibition in premotor cortex corresponds to a complex reshuffle of the mesoscopic information network

Recent studies have explored functional and effective neural networks in animal models; however, the dynamics of information propagation among functional modules under cognitive control remain largely unknown. Here, we addressed the issue using transfer entropy and graph theory methods on mesoscopic neural activities recorded in the dorsal premotor cortex of rhesus monkeys. We focused our study on the decision time of a Stop-signal task, looking for patterns in the network configuration that could influence motor plan maturation when the Stop signal is provided. When comparing trials with successful inhibition to those with generated movement, the nodes of the network resulted organized into four clusters, hierarchically arranged, and distinctly involved in information transfer. Interestingly, the hierarchies and the strength of information transmission between clusters varied throughout the task, distinguishing between generated movements and canceled ones and corresponding to measurable levels of network complexity. Our results suggest a putative mechanism for motor inhibition in premotor cortex: a topological reshuffle of the information exchanged among ensembles of neurons.

Common functional mechanisms underlying dynamic brain network changes across five general anesthetics: A rat fMRI study

BACKGROUND

Reversible loss of consciousness is the primary therapeutic endpoint of general anesthesia; however, the drug-invariant mechanisms underlying anesthetic-induced unconsciousness are still unclear. This study aimed to investigate the static, dynamic, topological and organizational changes in functional brain network induced by five clinically-used general anesthetics in the rat brain.

METHOD

Male Sprague-Dawley rats (n = 57) were randomly allocated to received propofol, isoflurane, ketamine, dexmedetomidine, or combined isoflurane plus dexmedetomidine anesthesia. Resting-state functional magnetic resonance images were acquired under general anesthesia and analyzed for changes in dynamic functional brain networks compared to the awake state.

RESULTS

Different general anesthetics induced distinct patterns of functional connectivity inhibition within brain-wide networks, resulting in multi-level network reorganization primarily by impairing the functional connectivity of cortico-subcortical networks as well as by reducing information transmission capacity, intrinsic connectivity, and network architecture stability of subcortical regions. Conversely, functional connectivity and topological properties were preserved within cortico-cortical networks, albeit with fewer dynamic fluctuations under general anesthesia.

CONCLUSIONS

Our findings highlighted the effects of different general anesthetics on functional brain network reorganization, which might shed light on the drug-invariant mechanism of anesthetic-induced unconsciousness.

Sliding window functional connectivity inference with nonstationary autocorrelations and cross-correlations

Functional connectivity (FC) is the degree of synchrony of time series between distinct, spatially separated brain regions. While traditional FC analysis assumes the temporal stationarity throughout a brain scan, there is growing recognition that connectivity can change over time and is not stationary, leading to the concept of dynamic FC (dFC). Resting-state functional magnetic resonance imaging (fMRI) can assess dFC using the sliding window method with the correlation analysis of fMRI signals. Accurate statistical inference of sliding window correlation must consider the autocorrelated nature of the time series. Currently, the dynamic consideration is mainly confined to the point estimation of sliding window correlations. Using in vivo resting-state fMRI data, we first demonstrate the non-stationarity in both the cross-correlation function (XCF) and the autocorrelation function (ACF). Then, we propose the variance estimation of the sliding window correlation considering the nonstationary of XCF and ACF. This approach provides a means to dynamically estimate confidence intervals in assessing dynamic connectivity. Using simulations, we compare the performance of the proposed method with other methods, showing the impact of dynamic ACF and XCF on connectivity inference. Accurate variance estimation can help in addressing the critical issue of false positivity and negativity.

Withdrawn: The altered dynamic community structure for adaptive adjustment in stroke patients with multidomain cognitive impairments: A multilayer network analysis

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In vivo whole-cortex marker of excitation-inhibition ratio indexes cortical maturation and cognitive ability in youth

A balanced excitation-inhibition ratio (E/I ratio) is critical for healthy brain function. Normative development of cortex-wide E/I ratio remains unknown. Here, we noninvasively estimate a putative marker of whole-cortex E/I ratio by fitting a large-scale biophysically plausible circuit model to resting-state functional MRI (fMRI) data. We first confirm that our model generates realistic brain dynamics in the Human Connectome Project. Next, we show that the estimated E/I ratio marker is sensitive to the gamma-aminobutyric acid (GABA) agonist benzodiazepine alprazolam during fMRI. Alprazolam-induced E/I changes are spatially consistent with positron emission tomography measurement of benzodiazepine receptor density. We then investigate the relationship between the E/I ratio marker and neurodevelopment. We find that the E/I ratio marker declines heterogeneously across the cerebral cortex during youth, with the greatest reduction occurring in sensorimotor systems relative to association systems. Importantly, among children with the same chronological age, a lower E/I ratio marker (especially in the association cortex) is linked to better cognitive performance. This result is replicated across North American (8.2 to 23.0 y old) and Asian (7.2 to 7.9 y old) cohorts, suggesting that a more mature E/I ratio indexes improved cognition during normative development. Overall, our findings open the door to studying how disrupted E/I trajectories may lead to cognitive dysfunction in psychopathology that emerges during youth.

Brain states as wave-like motifs

There is ample evidence of wave-like activity in the brain at multiple scales and levels. This emerging literature supports the broader adoption of a wave perspective of brain activity. Specifically, a brain state can be described as a set of recurring, sequential patterns of propagating brain activity, namely a wave. We examine a collective body of experimental work investigating wave-like properties. Based on these works, we consider brain states as waves using a scale-agnostic framework across time and space. Emphasis is placed on the sequentiality and periodicity associated with brain activity. We conclude by discussing the implications, prospects, and experimental opportunities of this framework.

The dynamics of functional brain network segregation in feedback-driven learning

Prior evidence suggests that increasingly efficient task performance in human learning is associated with large scale brain network dynamics. However, the specific nature of this general relationship has remained unclear. Here, we characterize performance improvement during feedback-driven stimulus-response (S-R) learning by learning rate as well as S-R habit strength and test whether and how these two behavioral measures are associated with a functional brain state transition from a more integrated to a more segregated brain state across learning. Capitalizing on two separate fMRI studies using similar but not identical experimental designs, we demonstrate for both studies that a higher learning rate is associated with a more rapid brain network segregation. By contrast, S-R habit strength is not reliably related to changes in brain network segregation. Overall, our current study results highlight the utility of dynamic functional brain state analysis. From a broader perspective taking into account previous study results, our findings align with a framework that conceptualizes brain network segregation as a general feature of processing efficiency not only in feedback-driven learning as in the present study but also in other types of learning and in other task domains.

Development of neonatal connectome dynamics and its prediction for cognitive and language outcomes at age 2

The functional brain connectome is highly dynamic over time. However, how brain connectome dynamics evolves during the third trimester of pregnancy and is associated with later cognitive growth remains unknown. Here, we use resting-state functional Magnetic Resonance Imaging (MRI) data from 39 newborns aged 32 to 42 postmenstrual weeks to investigate the maturation process of connectome dynamics and its role in predicting neurocognitive outcomes at 2 years of age. Neonatal brain dynamics is assessed using a multilayer network model. Network dynamics decreases globally but increases in both modularity and diversity with development. Regionally, module switching decreases with development primarily in the lateral precentral gyrus, medial temporal lobe, and subcortical areas, with a higher growth rate in primary regions than in association regions. Support vector regression reveals that neonatal connectome dynamics is predictive of individual cognitive and language abilities at 2  years of age. Our findings highlight network-level neural substrates underlying early cognitive development.

Flexibility of brain dynamics is increased and predicts clinical impairment in relapsing-remitting but not in secondary progressive multiple sclerosis

Large-scale brain activity has long been investigated under the erroneous assumption of stationarity. Nowadays, we know that resting-state functional connectivity is characterized by aperiodic, scale-free bursts of activity (i.e. neuronal avalanches) that intermittently recruit different brain regions. These different patterns of activity represent a measure of brain flexibility, whose reduction has been found to predict clinical impairment in multiple neurodegenerative diseases such as Parkinson's disease, amyotrophic lateral sclerosis and Alzheimer's disease. Brain flexibility has been recently found increased in multiple sclerosis, but its relationship with clinical disability remains elusive. Also, potential differences in brain dynamics according to the multiple sclerosis clinical phenotypes remain unexplored so far. We performed a brain dynamics study quantifying brain flexibility utilizing the 'functional repertoire' (i.e. the number of configurations of active brain areas) through source reconstruction of magnetoencephalography signals in a cohort of 25 multiple sclerosis patients (10 relapsing-remitting multiple sclerosis and 15 secondary progressive multiple sclerosis) and 25 healthy controls. Multiple sclerosis patients showed a greater number of unique reconfigurations at fast time scales as compared with healthy controls. This difference was mainly driven by the relapsing-remitting multiple sclerosis phenotype, whereas no significant differences in brain dynamics were found between secondary progressive multiple sclerosis and healthy controls. Brain flexibility also showed a different predictive power on clinical disability according to the multiple sclerosis type. For the first time, we investigated brain dynamics in multiple sclerosis patients through high temporal resolution techniques, unveiling differences in brain flexibility according to the multiple sclerosis phenotype and its relationship with clinical disability.