1
|
Al-Mubarak AIA, Al-Kubati AAG, Sheikh A, Abdelaziz AM, Hussen J, Kandeel M, Falemban B, Hemida MG. Detection of Avian Orthoavulavirus-1 genotypes VI.2.1 and VII.1.1 with neuro-viscerotropic tropism in some backyard pigeons (Columbidae) in Eastern Saudi Arabia. Front Vet Sci 2024; 11:1352636. [PMID: 38500603 PMCID: PMC10947193 DOI: 10.3389/fvets.2024.1352636] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/08/2023] [Accepted: 02/06/2024] [Indexed: 03/20/2024] Open
Abstract
Introduction Avian orthoavulavirus-1 (AOAV1) has a wide host range, including domestic and wild birds. The present study aimed to identify the currently circulating AOAV1 strains from some outbreaks in some backyard pigeons in the eastern region of Saudi Arabia (ERSA). Methods Tracheal/cloacal swabs and tissue specimens were collected from eight backyards in Al-Ahsa, ERSA, between January 2021 and March 2023. Samples were tested for the presence of AOAV1 using commercial real-time RT-PCR. Part of the fusion gene was also amplified by gel-based RT-PCR, and the obtained amplicons were sequenced. Results and discussion AOAV1 was detected in samples from the eight flocks. The retrieved sequences from samples of 6/8 pigeon backyards are reported. Phylogenetic analysis based on the obtained sequences from these backyard pigeons showed the segregation of the obtained sequences in AOAV1 genotypes VI.2.1 and VII.1.1. Clinically, nervous manifestations were dominant in pigeons infected with both genotypes. Respiratory manifestations and significantly higher overall mortality rate were induced by genotype VI.2.1. The deduced amino acid sequences of the fusion protein cleavage site (FPCS) showed that all the detected isolates belong to velogenic strains. Differences in clinical profiles induced by the natural infection of pigeons with AOAV1 genotypes VI.2.1 and VII.1.1 were reported. The present findings highlight the potential roles of some backyard pigeons in the long-distance spread and cross-species transmission of the reported AOAVI genotypes. Further research is required to perform biotyping and pathotyping of the reported strains.
Collapse
Affiliation(s)
- Abdullah I. A. Al-Mubarak
- Department of Microbiology, College of Veterinary Medicine, King Faisal University, Al-Hofuf, Saudi Arabia
| | - Anwar A. G. Al-Kubati
- Department of Veterinary Medicine, Faculty of Agriculture and Veterinary Medicine, Thamar University, Dhamar, Yemen
| | - Abdullah Sheikh
- Camel Research Center, King Faisal University, Al Hofuf, Saudi Arabia
| | - Adel M. Abdelaziz
- Faculty of Veterinary Medicine, Veterinary Educational Hospital, Zagazig University, Zagazig, Egypt
- Veterinary Diagnostic Laboratory, Ministry of Environment, Water and Agriculture, Al-Ahsa, Saudi Arabia.
| | - Jamal Hussen
- Department of Microbiology, College of Veterinary Medicine, King Faisal University, Al-Hofuf, Saudi Arabia
| | - Mahmoud Kandeel
- Department of Biomedical Sciences, College of Veterinary Medicine, King Faisal University, Al-Hofuf, Saudi Arabia
- Department of Pharmacology, Faculty of Veterinary Medicine, Kafrelsheikh University, Kafrelsheikh, Egypt
| | - Baraa Falemban
- Department of Microbiology, College of Veterinary Medicine, King Faisal University, Al-Hofuf, Saudi Arabia
| | - Maged Gomaa Hemida
- Department of Veterinary Biomedical Sciences, College of Veterinary Medicine, Long Island University, Brookville, NY, United States
| |
Collapse
|
2
|
Cui S, Xiong H, Feng Z, Chu Y, Que C, Qin J, Pan Y, Yu K, Jia L, Yao X, Liao J, Huo D, Guo C, Zhao H, Xu M, Tian Y, Peng Q, Li F, Xu H, Hong R, Zhang D, Wang G, Yang P, Gao GF, Wang Q. Severe pigeon paramyxovirus 1 infection in a human case with probable post-COVID-19 condition. Emerg Microbes Infect 2023; 12:2251600. [PMID: 37606967 PMCID: PMC10469423 DOI: 10.1080/22221751.2023.2251600] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/24/2023] [Revised: 08/16/2023] [Accepted: 08/20/2023] [Indexed: 08/23/2023]
Abstract
Pigeon paramyxovirus 1 (PPMV-1) is an antigenic host variant of avian paramyxovirus 1. Sporadic outbreaks of PPMV-1 infection have occurred in pigeons in China; however, few cases of human PPMV-1 infection have been reported. The purpose of this article is to report a case of severe human PPMV-1 infection in an individual with probable post-COVID-19 syndrome (long COVID) who presented with rapidly progressing pulmonary infection. The patient was a 66-year-old man who was admitted to the intensive care unit 11 days after onset of pneumonia and recovered 64 days after onset. PPMV-1 was isolated from the patient's sputum and in cloacal smear samples from domesticated pigeons belonging to the patient's neighbour. Residual severe acute respiratory syndrome coronavirus 2 was detected in respiratory and anal swab samples from the patient. Sequencing analyses revealed that the PPMV-1 genome belonged to genotype VI.2.1.1.2.2 and had the 112RRQKRF117 motif in the cleavage site of the fusion protein, which is indicative of high virulence. This case of cross-species transmission of PPMV-1 from a pigeon to a human highlights the risk of severe PPMV-1 infection in immunocompromised patients, especially those with long COVID. Enhanced surveillance for increased risk of severe viral infection is warranted in this population.
Collapse
Affiliation(s)
- Shujuan Cui
- Beijing Center for Disease Prevention and Control, Beijing, People’s Republic of China
- Beijing Research Center for Respiratory Infectious Diseases, Beijing, People’s Republic of China
| | - Hui Xiong
- Department of Emergency, Peking University First Hospital, Beijing, People’s Republic of China
| | - Zhaomin Feng
- Beijing Center for Disease Prevention and Control, Beijing, People’s Republic of China
- Beijing Research Center for Respiratory Infectious Diseases, Beijing, People’s Republic of China
| | - Yanhui Chu
- Xicheng District Center for Disease Prevention and Control, Beijing, People’s Republic of China
| | - Chengli Que
- Department of Respiratory and Critical Care Medicine, Peking University First Hospital, Beijing, People’s Republic of China
| | - Jingning Qin
- Xicheng District Center for Disease Prevention and Control, Beijing, People’s Republic of China
| | - Yang Pan
- Beijing Center for Disease Prevention and Control, Beijing, People’s Republic of China
| | - Kunyao Yu
- Department of Respiratory and Critical Care Medicine, Peking University First Hospital, Beijing, People’s Republic of China
| | - Lei Jia
- Beijing Center for Disease Prevention and Control, Beijing, People’s Republic of China
| | - Xi Yao
- Department of infection control, Peking University First Hospital, Beijing, People’s Republic of China
| | - Jiping Liao
- Department of Respiratory and Critical Care Medicine, Peking University First Hospital, Beijing, People’s Republic of China
| | - Da Huo
- Beijing Center for Disease Prevention and Control, Beijing, People’s Republic of China
| | - Cuiyan Guo
- Department of Respiratory and Critical Care Medicine, Peking University First Hospital, Beijing, People’s Republic of China
| | - Hao Zhao
- Beijing Center for Disease Prevention and Control, Beijing, People’s Republic of China
| | - Meng Xu
- Department of Emergency, Peking University First Hospital, Beijing, People’s Republic of China
| | - Yanan Tian
- Department of Emergency, Peking University First Hospital, Beijing, People’s Republic of China
| | - Qing Peng
- Department of neurology, Peking University First Hospital, Beijing, People’s Republic of China
| | - Fu Li
- Beijing Center for Disease Prevention and Control, Beijing, People’s Republic of China
| | - Hui Xu
- Beijing Center for Disease Prevention and Control, Beijing, People’s Republic of China
| | - Runsheng Hong
- Department of Respiratory and Critical Care Medicine, Peking University First Hospital, Beijing, People’s Republic of China
| | - Daitao Zhang
- Beijing Center for Disease Prevention and Control, Beijing, People’s Republic of China
- Beijing Research Center for Respiratory Infectious Diseases, Beijing, People’s Republic of China
| | - Guangfa Wang
- Department of Respiratory and Critical Care Medicine, Peking University First Hospital, Beijing, People’s Republic of China
| | - Peng Yang
- Beijing Center for Disease Prevention and Control, Beijing, People’s Republic of China
- Beijing Research Center for Respiratory Infectious Diseases, Beijing, People’s Republic of China
| | - George F. Gao
- CAS Key Laboratory of Pathogen Microbiology and Immunology, Institute of Microbiology, Center for Influenza Research and Early-warning (CASCIRE), CAS-TWAS Center of Excellence for Emerging Infectious Diseases (CEEID), Chinese Academy of Sciences, Beijing, People’s Republic of China
- University of Chinese Academy of Sciences, Beijing, People’s Republic of China
| | - Quanyi Wang
- Beijing Center for Disease Prevention and Control, Beijing, People’s Republic of China
- Beijing Research Center for Respiratory Infectious Diseases, Beijing, People’s Republic of China
- School of Public Health, Capital Medical University, Beijing, People’s Republic of China
| |
Collapse
|
3
|
Hurley S, Eden JS, Bingham J, Rodriguez M, Neave MJ, Johnson A, Howard-Jones AR, Kok J, Anazodo A, McMullan B, Williams DT, Watson J, Solinas A, Kim KW, Rawlinson W. Fatal Human Neurologic Infection Caused by Pigeon Avian Paramyxovirus-1, Australia. Emerg Infect Dis 2023; 29:2482-2487. [PMID: 37987582 PMCID: PMC10683822 DOI: 10.3201/eid2912.230250] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2023] Open
Abstract
Avian paramyxovirus type 1 (APMV-1) is a virus of birds that results in a range of outcomes, from asymptomatic infections to outbreaks of systemic respiratory and neurologic disease, depending on the virus strain and the avian species affected. Humans are rarely affected; those who are predominantly experience mild conjunctivitis. We report a fatal case of neurologic disease in a 2-year-old immunocompromised child in Australia. Metagenomic sequencing and histopathology identified the causative agent as the pigeon variant of APMV-1. This diagnosis should be considered in neurologic conditions of undefined etiologies. Agnostic metagenomic sequencing methods are useful in such settings to direct diagnostic and therapeutic efforts.
Collapse
Affiliation(s)
| | | | - John Bingham
- Prince of Wales Hospital, Randwick, New South Wales, Australia (S. Hurley, K.W. Kim)
- Westmead Institute for Medical Research Centre for Virus Research, Westmead, New South Wales, Australia (J.S. Eden)
- Sydney Institute for Infectious Diseases, University of Sydney Faculty of Medicine and Health, Sydney, New South Wales, Australia (J.S. Eden, A.R. Howard-Jones)
- CSIRO Australian Centre for Disease Preparedness, Geelong, Victoria, Australia (J. Bingham, M.J. Neave, D.T. Williams, J. Watson)
- Prince of Wales and Sydney Children’s Hospital, Randwick (M. Rodriguez, A. Solinas)
- Sydney Children’s Hospital, Randwick (A. Johnson, B. McMullan)
- Centre for Infectious Diseases and Microbiology Laboratory Services, New South Wales Health Pathology–Institute of Clinical Pathology and Medical Research, Westmead (A.R. Howard-Jones, J. Kok)
- Kids Cancer Centre, Sydney Children’s Hospital, Randwick (A. Anazodo)
- University of New South Wales Faculty of Medicine and Health, School of Clinical Medicine, Sydney (B. McMullan, K. Kim)
- Prince of Wales Hospital and Community Health Services, Sydney (W. Rawlinson)
- University of New South Wales Schools of Clinical Medicine, Biotechnology and Biomolecular Sciences, Sydney (W. Rawlinson)
| | - Michael Rodriguez
- Prince of Wales Hospital, Randwick, New South Wales, Australia (S. Hurley, K.W. Kim)
- Westmead Institute for Medical Research Centre for Virus Research, Westmead, New South Wales, Australia (J.S. Eden)
- Sydney Institute for Infectious Diseases, University of Sydney Faculty of Medicine and Health, Sydney, New South Wales, Australia (J.S. Eden, A.R. Howard-Jones)
- CSIRO Australian Centre for Disease Preparedness, Geelong, Victoria, Australia (J. Bingham, M.J. Neave, D.T. Williams, J. Watson)
- Prince of Wales and Sydney Children’s Hospital, Randwick (M. Rodriguez, A. Solinas)
- Sydney Children’s Hospital, Randwick (A. Johnson, B. McMullan)
- Centre for Infectious Diseases and Microbiology Laboratory Services, New South Wales Health Pathology–Institute of Clinical Pathology and Medical Research, Westmead (A.R. Howard-Jones, J. Kok)
- Kids Cancer Centre, Sydney Children’s Hospital, Randwick (A. Anazodo)
- University of New South Wales Faculty of Medicine and Health, School of Clinical Medicine, Sydney (B. McMullan, K. Kim)
- Prince of Wales Hospital and Community Health Services, Sydney (W. Rawlinson)
- University of New South Wales Schools of Clinical Medicine, Biotechnology and Biomolecular Sciences, Sydney (W. Rawlinson)
| | - Matthew J. Neave
- Prince of Wales Hospital, Randwick, New South Wales, Australia (S. Hurley, K.W. Kim)
- Westmead Institute for Medical Research Centre for Virus Research, Westmead, New South Wales, Australia (J.S. Eden)
- Sydney Institute for Infectious Diseases, University of Sydney Faculty of Medicine and Health, Sydney, New South Wales, Australia (J.S. Eden, A.R. Howard-Jones)
- CSIRO Australian Centre for Disease Preparedness, Geelong, Victoria, Australia (J. Bingham, M.J. Neave, D.T. Williams, J. Watson)
- Prince of Wales and Sydney Children’s Hospital, Randwick (M. Rodriguez, A. Solinas)
- Sydney Children’s Hospital, Randwick (A. Johnson, B. McMullan)
- Centre for Infectious Diseases and Microbiology Laboratory Services, New South Wales Health Pathology–Institute of Clinical Pathology and Medical Research, Westmead (A.R. Howard-Jones, J. Kok)
- Kids Cancer Centre, Sydney Children’s Hospital, Randwick (A. Anazodo)
- University of New South Wales Faculty of Medicine and Health, School of Clinical Medicine, Sydney (B. McMullan, K. Kim)
- Prince of Wales Hospital and Community Health Services, Sydney (W. Rawlinson)
- University of New South Wales Schools of Clinical Medicine, Biotechnology and Biomolecular Sciences, Sydney (W. Rawlinson)
| | - Alexandra Johnson
- Prince of Wales Hospital, Randwick, New South Wales, Australia (S. Hurley, K.W. Kim)
- Westmead Institute for Medical Research Centre for Virus Research, Westmead, New South Wales, Australia (J.S. Eden)
- Sydney Institute for Infectious Diseases, University of Sydney Faculty of Medicine and Health, Sydney, New South Wales, Australia (J.S. Eden, A.R. Howard-Jones)
- CSIRO Australian Centre for Disease Preparedness, Geelong, Victoria, Australia (J. Bingham, M.J. Neave, D.T. Williams, J. Watson)
- Prince of Wales and Sydney Children’s Hospital, Randwick (M. Rodriguez, A. Solinas)
- Sydney Children’s Hospital, Randwick (A. Johnson, B. McMullan)
- Centre for Infectious Diseases and Microbiology Laboratory Services, New South Wales Health Pathology–Institute of Clinical Pathology and Medical Research, Westmead (A.R. Howard-Jones, J. Kok)
- Kids Cancer Centre, Sydney Children’s Hospital, Randwick (A. Anazodo)
- University of New South Wales Faculty of Medicine and Health, School of Clinical Medicine, Sydney (B. McMullan, K. Kim)
- Prince of Wales Hospital and Community Health Services, Sydney (W. Rawlinson)
- University of New South Wales Schools of Clinical Medicine, Biotechnology and Biomolecular Sciences, Sydney (W. Rawlinson)
| | - Annaleise R. Howard-Jones
- Prince of Wales Hospital, Randwick, New South Wales, Australia (S. Hurley, K.W. Kim)
- Westmead Institute for Medical Research Centre for Virus Research, Westmead, New South Wales, Australia (J.S. Eden)
- Sydney Institute for Infectious Diseases, University of Sydney Faculty of Medicine and Health, Sydney, New South Wales, Australia (J.S. Eden, A.R. Howard-Jones)
- CSIRO Australian Centre for Disease Preparedness, Geelong, Victoria, Australia (J. Bingham, M.J. Neave, D.T. Williams, J. Watson)
- Prince of Wales and Sydney Children’s Hospital, Randwick (M. Rodriguez, A. Solinas)
- Sydney Children’s Hospital, Randwick (A. Johnson, B. McMullan)
- Centre for Infectious Diseases and Microbiology Laboratory Services, New South Wales Health Pathology–Institute of Clinical Pathology and Medical Research, Westmead (A.R. Howard-Jones, J. Kok)
- Kids Cancer Centre, Sydney Children’s Hospital, Randwick (A. Anazodo)
- University of New South Wales Faculty of Medicine and Health, School of Clinical Medicine, Sydney (B. McMullan, K. Kim)
- Prince of Wales Hospital and Community Health Services, Sydney (W. Rawlinson)
- University of New South Wales Schools of Clinical Medicine, Biotechnology and Biomolecular Sciences, Sydney (W. Rawlinson)
| | - Jen Kok
- Prince of Wales Hospital, Randwick, New South Wales, Australia (S. Hurley, K.W. Kim)
- Westmead Institute for Medical Research Centre for Virus Research, Westmead, New South Wales, Australia (J.S. Eden)
- Sydney Institute for Infectious Diseases, University of Sydney Faculty of Medicine and Health, Sydney, New South Wales, Australia (J.S. Eden, A.R. Howard-Jones)
- CSIRO Australian Centre for Disease Preparedness, Geelong, Victoria, Australia (J. Bingham, M.J. Neave, D.T. Williams, J. Watson)
- Prince of Wales and Sydney Children’s Hospital, Randwick (M. Rodriguez, A. Solinas)
- Sydney Children’s Hospital, Randwick (A. Johnson, B. McMullan)
- Centre for Infectious Diseases and Microbiology Laboratory Services, New South Wales Health Pathology–Institute of Clinical Pathology and Medical Research, Westmead (A.R. Howard-Jones, J. Kok)
- Kids Cancer Centre, Sydney Children’s Hospital, Randwick (A. Anazodo)
- University of New South Wales Faculty of Medicine and Health, School of Clinical Medicine, Sydney (B. McMullan, K. Kim)
- Prince of Wales Hospital and Community Health Services, Sydney (W. Rawlinson)
- University of New South Wales Schools of Clinical Medicine, Biotechnology and Biomolecular Sciences, Sydney (W. Rawlinson)
| | - Antoinette Anazodo
- Prince of Wales Hospital, Randwick, New South Wales, Australia (S. Hurley, K.W. Kim)
- Westmead Institute for Medical Research Centre for Virus Research, Westmead, New South Wales, Australia (J.S. Eden)
- Sydney Institute for Infectious Diseases, University of Sydney Faculty of Medicine and Health, Sydney, New South Wales, Australia (J.S. Eden, A.R. Howard-Jones)
- CSIRO Australian Centre for Disease Preparedness, Geelong, Victoria, Australia (J. Bingham, M.J. Neave, D.T. Williams, J. Watson)
- Prince of Wales and Sydney Children’s Hospital, Randwick (M. Rodriguez, A. Solinas)
- Sydney Children’s Hospital, Randwick (A. Johnson, B. McMullan)
- Centre for Infectious Diseases and Microbiology Laboratory Services, New South Wales Health Pathology–Institute of Clinical Pathology and Medical Research, Westmead (A.R. Howard-Jones, J. Kok)
- Kids Cancer Centre, Sydney Children’s Hospital, Randwick (A. Anazodo)
- University of New South Wales Faculty of Medicine and Health, School of Clinical Medicine, Sydney (B. McMullan, K. Kim)
- Prince of Wales Hospital and Community Health Services, Sydney (W. Rawlinson)
- University of New South Wales Schools of Clinical Medicine, Biotechnology and Biomolecular Sciences, Sydney (W. Rawlinson)
| | - Brendan McMullan
- Prince of Wales Hospital, Randwick, New South Wales, Australia (S. Hurley, K.W. Kim)
- Westmead Institute for Medical Research Centre for Virus Research, Westmead, New South Wales, Australia (J.S. Eden)
- Sydney Institute for Infectious Diseases, University of Sydney Faculty of Medicine and Health, Sydney, New South Wales, Australia (J.S. Eden, A.R. Howard-Jones)
- CSIRO Australian Centre for Disease Preparedness, Geelong, Victoria, Australia (J. Bingham, M.J. Neave, D.T. Williams, J. Watson)
- Prince of Wales and Sydney Children’s Hospital, Randwick (M. Rodriguez, A. Solinas)
- Sydney Children’s Hospital, Randwick (A. Johnson, B. McMullan)
- Centre for Infectious Diseases and Microbiology Laboratory Services, New South Wales Health Pathology–Institute of Clinical Pathology and Medical Research, Westmead (A.R. Howard-Jones, J. Kok)
- Kids Cancer Centre, Sydney Children’s Hospital, Randwick (A. Anazodo)
- University of New South Wales Faculty of Medicine and Health, School of Clinical Medicine, Sydney (B. McMullan, K. Kim)
- Prince of Wales Hospital and Community Health Services, Sydney (W. Rawlinson)
- University of New South Wales Schools of Clinical Medicine, Biotechnology and Biomolecular Sciences, Sydney (W. Rawlinson)
| | - David T. Williams
- Prince of Wales Hospital, Randwick, New South Wales, Australia (S. Hurley, K.W. Kim)
- Westmead Institute for Medical Research Centre for Virus Research, Westmead, New South Wales, Australia (J.S. Eden)
- Sydney Institute for Infectious Diseases, University of Sydney Faculty of Medicine and Health, Sydney, New South Wales, Australia (J.S. Eden, A.R. Howard-Jones)
- CSIRO Australian Centre for Disease Preparedness, Geelong, Victoria, Australia (J. Bingham, M.J. Neave, D.T. Williams, J. Watson)
- Prince of Wales and Sydney Children’s Hospital, Randwick (M. Rodriguez, A. Solinas)
- Sydney Children’s Hospital, Randwick (A. Johnson, B. McMullan)
- Centre for Infectious Diseases and Microbiology Laboratory Services, New South Wales Health Pathology–Institute of Clinical Pathology and Medical Research, Westmead (A.R. Howard-Jones, J. Kok)
- Kids Cancer Centre, Sydney Children’s Hospital, Randwick (A. Anazodo)
- University of New South Wales Faculty of Medicine and Health, School of Clinical Medicine, Sydney (B. McMullan, K. Kim)
- Prince of Wales Hospital and Community Health Services, Sydney (W. Rawlinson)
- University of New South Wales Schools of Clinical Medicine, Biotechnology and Biomolecular Sciences, Sydney (W. Rawlinson)
| | - James Watson
- Prince of Wales Hospital, Randwick, New South Wales, Australia (S. Hurley, K.W. Kim)
- Westmead Institute for Medical Research Centre for Virus Research, Westmead, New South Wales, Australia (J.S. Eden)
- Sydney Institute for Infectious Diseases, University of Sydney Faculty of Medicine and Health, Sydney, New South Wales, Australia (J.S. Eden, A.R. Howard-Jones)
- CSIRO Australian Centre for Disease Preparedness, Geelong, Victoria, Australia (J. Bingham, M.J. Neave, D.T. Williams, J. Watson)
- Prince of Wales and Sydney Children’s Hospital, Randwick (M. Rodriguez, A. Solinas)
- Sydney Children’s Hospital, Randwick (A. Johnson, B. McMullan)
- Centre for Infectious Diseases and Microbiology Laboratory Services, New South Wales Health Pathology–Institute of Clinical Pathology and Medical Research, Westmead (A.R. Howard-Jones, J. Kok)
- Kids Cancer Centre, Sydney Children’s Hospital, Randwick (A. Anazodo)
- University of New South Wales Faculty of Medicine and Health, School of Clinical Medicine, Sydney (B. McMullan, K. Kim)
- Prince of Wales Hospital and Community Health Services, Sydney (W. Rawlinson)
- University of New South Wales Schools of Clinical Medicine, Biotechnology and Biomolecular Sciences, Sydney (W. Rawlinson)
| | - Annalisa Solinas
- Prince of Wales Hospital, Randwick, New South Wales, Australia (S. Hurley, K.W. Kim)
- Westmead Institute for Medical Research Centre for Virus Research, Westmead, New South Wales, Australia (J.S. Eden)
- Sydney Institute for Infectious Diseases, University of Sydney Faculty of Medicine and Health, Sydney, New South Wales, Australia (J.S. Eden, A.R. Howard-Jones)
- CSIRO Australian Centre for Disease Preparedness, Geelong, Victoria, Australia (J. Bingham, M.J. Neave, D.T. Williams, J. Watson)
- Prince of Wales and Sydney Children’s Hospital, Randwick (M. Rodriguez, A. Solinas)
- Sydney Children’s Hospital, Randwick (A. Johnson, B. McMullan)
- Centre for Infectious Diseases and Microbiology Laboratory Services, New South Wales Health Pathology–Institute of Clinical Pathology and Medical Research, Westmead (A.R. Howard-Jones, J. Kok)
- Kids Cancer Centre, Sydney Children’s Hospital, Randwick (A. Anazodo)
- University of New South Wales Faculty of Medicine and Health, School of Clinical Medicine, Sydney (B. McMullan, K. Kim)
- Prince of Wales Hospital and Community Health Services, Sydney (W. Rawlinson)
- University of New South Wales Schools of Clinical Medicine, Biotechnology and Biomolecular Sciences, Sydney (W. Rawlinson)
| | | | | |
Collapse
|
4
|
Zou X, Suo L, Wang Y, Cao H, Mu S, Wu C, Yan L, Qi X, Lu J, Lu B, Fan Y, Li H, Huang L, Ren L, Liu B, Cao B. Concurrent pigeon paramyxovirus-1 and Acinetobacter baumannii infection in a fatal case of pneumonia. Emerg Microbes Infect 2022; 11:968-977. [PMID: 35290154 PMCID: PMC8973364 DOI: 10.1080/22221751.2022.2054366] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/04/2022]
Abstract
Pigeon paramyxovirus type 1 (PPMV-1), an antigenic variant of avian paramyxovirus type 1 (APMV-1), mainly infects pigeons. PPMV-1 genotype VI is the dominant genotype infecting pigeons in China. Human infection of avian paramyxovirus was rarely reported, and usually developed mild symptoms, such as conjunctivitis. We detected PPMV-1 in the lower respiratory sample from a fatal case with severe pneumonia; this patient aged 64 years presented cough, fever, and haemoptysis for 8 days and was admitted to hospital on Dec 26, 2020. He developed acute respiratory distress syndrome and sepsis in the following days and died of multiple organ failure on Jan 7, 2021. Sputum and blood culture reported multidrug-resistant Acinetobacter baumannii (ABA) for samples collected on days 22 and 19 post-illness, respectively. However, clinical metagenomic sequencing further reported PPMV-1 besides ABA in the bronchoalveolar lavage fluid. The PPMV-1 genome showed 99.21% identity with a Chinese strain and belonged to VI genotype by BLAST analysis. Multiple basic amino acids were observed at the cleavage site of F protein (113RKKRF117), which indicated high virulence of this PPMV-1 strain to poultry. The patient had close contact with pigeons before his illness, and PPMV-1 nucleic acid was detected from the pigeon feather. PPMV antibody was also detected in the patient serum 20 days after illness. In conclusion, concurrent PPMV-1 genotype VI.2.1.1.2.2 and ABA infection were identified in a fatal pneumonia case, and cross-species transmission of PPMV-1 may occur between infected pigeons and the human being.
Collapse
Affiliation(s)
- Xiaohui Zou
- Department of Pulmonary and Critical Care Medicine, Center of Respiratory Medicine, National Clinical Research Center for Respiratory Diseases, China-Japan Friendship Hospital, Beijing, People's Republic of China.,National Center for Respiratory Medicine, Beijing, People's Republic of China.,Institute of Respiratory Medicine, Chinese Academy of Medical Sciences, Beijing, People's Republic of China
| | - Lijun Suo
- Department of Pulmonary and Critical Care Medicine, Zibo Municipal Hospital, Zibo, People's Republic of China.,Zibo City Key Laboratory of Respiratory Infection and Clinical Microbiology & Zibo City Engineering Technology Research Center of Etiology Molecular Diagnosis, Zibo, People's Republic of China
| | - Yiming Wang
- Department of Pulmonary and Critical Care Medicine, Center of Respiratory Medicine, National Clinical Research Center for Respiratory Diseases, China-Japan Friendship Hospital, Beijing, People's Republic of China.,National Center for Respiratory Medicine, Beijing, People's Republic of China.,Institute of Respiratory Medicine, Chinese Academy of Medical Sciences, Beijing, People's Republic of China
| | - Hongyun Cao
- Zibo City Key Laboratory of Respiratory Infection and Clinical Microbiology & Zibo City Engineering Technology Research Center of Etiology Molecular Diagnosis, Zibo, People's Republic of China.,Department of Clinical Microbiology, Zibo Municipal Hospital, Zibo, People's Republic of China
| | - Shengrui Mu
- Department of Pulmonary and Critical Care Medicine, Center of Respiratory Medicine, National Clinical Research Center for Respiratory Diseases, China-Japan Friendship Hospital, Beijing, People's Republic of China.,National Center for Respiratory Medicine, Beijing, People's Republic of China.,Institute of Respiratory Medicine, Chinese Academy of Medical Sciences, Beijing, People's Republic of China
| | - Chao Wu
- NHC Key Laboratory of Systems Biology of Pathogens and Christophe Mérieux Laboratory, Institute of Pathogen Biology, Chinese Academy of Medical Sciences & Peking Union Medical College, Beijing, People's Republic of China
| | - Lizhen Yan
- Department of Pulmonary and Critical Care Medicine, Zibo Municipal Hospital, Zibo, People's Republic of China.,Zibo City Key Laboratory of Respiratory Infection and Clinical Microbiology & Zibo City Engineering Technology Research Center of Etiology Molecular Diagnosis, Zibo, People's Republic of China
| | - Xiaowei Qi
- Department of Pulmonary and Critical Care Medicine, Zibo Municipal Hospital, Zibo, People's Republic of China.,Zibo City Key Laboratory of Respiratory Infection and Clinical Microbiology & Zibo City Engineering Technology Research Center of Etiology Molecular Diagnosis, Zibo, People's Republic of China
| | - Jianwei Lu
- Department of Pulmonary and Critical Care Medicine, Zibo Municipal Hospital, Zibo, People's Republic of China.,Zibo City Key Laboratory of Respiratory Infection and Clinical Microbiology & Zibo City Engineering Technology Research Center of Etiology Molecular Diagnosis, Zibo, People's Republic of China
| | - Binghuai Lu
- Department of Pulmonary and Critical Care Medicine, Center of Respiratory Medicine, National Clinical Research Center for Respiratory Diseases, China-Japan Friendship Hospital, Beijing, People's Republic of China.,National Center for Respiratory Medicine, Beijing, People's Republic of China.,Institute of Respiratory Medicine, Chinese Academy of Medical Sciences, Beijing, People's Republic of China
| | - Yanyan Fan
- Department of Pulmonary and Critical Care Medicine, Center of Respiratory Medicine, National Clinical Research Center for Respiratory Diseases, China-Japan Friendship Hospital, Beijing, People's Republic of China.,National Center for Respiratory Medicine, Beijing, People's Republic of China.,Institute of Respiratory Medicine, Chinese Academy of Medical Sciences, Beijing, People's Republic of China
| | - Hui Li
- Department of Pulmonary and Critical Care Medicine, Center of Respiratory Medicine, National Clinical Research Center for Respiratory Diseases, China-Japan Friendship Hospital, Beijing, People's Republic of China.,National Center for Respiratory Medicine, Beijing, People's Republic of China.,Institute of Respiratory Medicine, Chinese Academy of Medical Sciences, Beijing, People's Republic of China
| | - Lixue Huang
- Department of Pulmonary and Critical Care Medicine, Center of Respiratory Medicine, National Clinical Research Center for Respiratory Diseases, China-Japan Friendship Hospital, Beijing, People's Republic of China.,National Center for Respiratory Medicine, Beijing, People's Republic of China.,Institute of Respiratory Medicine, Chinese Academy of Medical Sciences, Beijing, People's Republic of China
| | - Lili Ren
- NHC Key Laboratory of Systems Biology of Pathogens and Christophe Mérieux Laboratory, Institute of Pathogen Biology, Chinese Academy of Medical Sciences & Peking Union Medical College, Beijing, People's Republic of China.,Key Laboratory of Respiratory Disease Pathogenomics and Christophe Mérieux Laboratory, Chinese Academy of Medical Sciences & Peking Union Medical College, Beijing, People's Republic of China
| | - Bo Liu
- Department of Pulmonary and Critical Care Medicine, Zibo Municipal Hospital, Zibo, People's Republic of China.,Zibo City Key Laboratory of Respiratory Infection and Clinical Microbiology & Zibo City Engineering Technology Research Center of Etiology Molecular Diagnosis, Zibo, People's Republic of China.,Department of Clinical Microbiology, Zibo Municipal Hospital, Zibo, People's Republic of China
| | - Bin Cao
- Department of Pulmonary and Critical Care Medicine, Center of Respiratory Medicine, National Clinical Research Center for Respiratory Diseases, China-Japan Friendship Hospital, Beijing, People's Republic of China.,National Center for Respiratory Medicine, Beijing, People's Republic of China.,Institute of Respiratory Medicine, Chinese Academy of Medical Sciences, Beijing, People's Republic of China.,Department of Respiratory Medicine, Capital Medical University, Beijing, People's Republic of China.,Tsinghua University-Peking University Joint Center for Life Sciences, Beijing, People's Republic of China
| |
Collapse
|
5
|
Pereira MR, Machado LC, de Oliveira Carvalho RD, de Lima Cavalcanti TYV, da Silva Filho GB, de Sousa Lima T, Fonseca SMC, de Assis Leite Souza F, da Luz Wallau G, de Souza Mendonça F, de Oliveira Franca RF. Identification of a Virulent Newcastle Disease Virus Strain Isolated from Pigeons (Columbia livia) in Northeastern Brazil Using Next-Generation Genome Sequencing. Viruses 2022; 14:v14071579. [PMID: 35891559 PMCID: PMC9319777 DOI: 10.3390/v14071579] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/13/2022] [Revised: 07/11/2022] [Accepted: 07/15/2022] [Indexed: 02/05/2023] Open
Abstract
Newcastle disease virus (NDV), also known as avian paramyxoviruses 1 (APMV-1) is among the most important viruses infecting avian species. Given its widespread circulation, there is a high risk for the reintroduction of virulent strains into the domestic poultry industry, making the surveillance of wild and domestic birds a crucial process to appropriately respond to novel outbreaks. In the present study, we investigated an outbreak characterized by the identification of sick pigeons in a large municipality in Northeastern Brazil in 2018. The affected pigeons presented neurological signs, including motor incoordination, torticollis, and lethargy. Moribund birds were collected, and through a detailed histopathological analysis we identified severe lymphoplasmacytic meningoencephalitis with perivascular cuffs and gliosis in the central nervous system, and lymphoplasmacytic inflammation in the liver, kidney, and intestine. A total of five pigeons tested positive for NDV, as assessed by rRT-PCR targeted to the M gene. Laboratory virus isolation on Vero E6 cells confirmed infection, after the recovery of infectious NVD from brain and kidney tissues. We next characterized the isolated NDV/pigeon/PE-Brazil/MP003/2018 by next-generation sequencing (NGS). Phylogenetic analysis grouped the virus with other NDV class II isolates from subgenotype VI.2.1.2, including two previous NDV isolates from Brazil in 2014 and 2019. The diversity of aminoacid residues at the fusion F protein cleavage site was analyzed identifying the motif RRQKR↓F, typical of virulent strains. Our results all highlight the importance of virus surveillance in wild and domestic birds, especially given the risk of zoonotic NDV.
Collapse
Affiliation(s)
- Mylena Ribeiro Pereira
- Laboratory of Animal Diagnosis, Federal Rural University of Pernambuco, Recife 52171-900, PE, Brazil; (M.R.P.); (G.B.d.S.F.); (T.d.S.L.); (S.M.C.F.); (F.d.A.L.S.)
- Department of Virology and Experimental Therapy, Oswaldo Cruz Foundation—Fiocruz, Recife 54740-465, PE, Brazil;
| | - Lais Ceschini Machado
- Department of Entomology, Oswaldo Cruz Foundation—Fiocruz, Recife 54740-465, PE, Brazil; (L.C.M.); (R.D.d.O.C.); (G.d.L.W.)
| | | | | | - Givaldo Bom da Silva Filho
- Laboratory of Animal Diagnosis, Federal Rural University of Pernambuco, Recife 52171-900, PE, Brazil; (M.R.P.); (G.B.d.S.F.); (T.d.S.L.); (S.M.C.F.); (F.d.A.L.S.)
| | - Telma de Sousa Lima
- Laboratory of Animal Diagnosis, Federal Rural University of Pernambuco, Recife 52171-900, PE, Brazil; (M.R.P.); (G.B.d.S.F.); (T.d.S.L.); (S.M.C.F.); (F.d.A.L.S.)
| | - Silvio Miguel Castillo Fonseca
- Laboratory of Animal Diagnosis, Federal Rural University of Pernambuco, Recife 52171-900, PE, Brazil; (M.R.P.); (G.B.d.S.F.); (T.d.S.L.); (S.M.C.F.); (F.d.A.L.S.)
| | - Francisco de Assis Leite Souza
- Laboratory of Animal Diagnosis, Federal Rural University of Pernambuco, Recife 52171-900, PE, Brazil; (M.R.P.); (G.B.d.S.F.); (T.d.S.L.); (S.M.C.F.); (F.d.A.L.S.)
| | - Gabriel da Luz Wallau
- Department of Entomology, Oswaldo Cruz Foundation—Fiocruz, Recife 54740-465, PE, Brazil; (L.C.M.); (R.D.d.O.C.); (G.d.L.W.)
| | - Fábio de Souza Mendonça
- Laboratory of Animal Diagnosis, Federal Rural University of Pernambuco, Recife 52171-900, PE, Brazil; (M.R.P.); (G.B.d.S.F.); (T.d.S.L.); (S.M.C.F.); (F.d.A.L.S.)
- Correspondence: (F.d.S.M.); (R.F.d.O.F.)
| | - Rafael Freitas de Oliveira Franca
- Department of Virology and Experimental Therapy, Oswaldo Cruz Foundation—Fiocruz, Recife 54740-465, PE, Brazil;
- Correspondence: (F.d.S.M.); (R.F.d.O.F.)
| |
Collapse
|
6
|
Thomazelli LM, Sinhorini JA, Oliveira DBL, Knöbl T, Bosqueiro TCM, Sano E, Costa GCV, Monteiro C, Dorlass EG, Utecht N, Scagion GP, Meneguin C, Silva LMN, Moraes MVS, Bueno LM, Reischak D, Carrasco AOT, Arns CW, Ferreira HL, Durigon EL. An Outbreak in Pigeons Caused by the Subgenotype VI.2.1.2 of Newcastle Disease Virus in Brazil. Viruses 2021; 13:v13122446. [PMID: 34960715 PMCID: PMC8706928 DOI: 10.3390/v13122446] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/26/2021] [Revised: 11/30/2021] [Accepted: 12/01/2021] [Indexed: 02/07/2023] Open
Abstract
Newcastle disease virus (NDV) can infect over 250 bird species with variable pathogenicity; it can also infect humans in rare cases. The present study investigated an outbreak in feral pigeons in São Paulo city, Brazil, in 2019. Affected birds displayed neurological signs, and hemorrhages were observed in different tissues. Histopathology changes with infiltration of mononuclear inflammatory cells were also found in the brain, kidney, proventriculus, heart, and spleen. NDV staining was detected by immunohistochemistry. Twenty-seven out of thirty-four tested samples (swabs and tissues) were positive for Newcastle disease virus by RT-qPCR test, targeting the M gene. One isolate, obtained from a pool of positive swab samples, was characterized by the intracerebral pathogenicity index (ICPI) and the hemagglutination inhibition (HI) tests. This isolate had an ICPI of 0.99, confirming a virulent NDV strain. The monoclonal antibody 617/161, which recognizes a distinct epitope in pigeon NDV strains, inhibited the isolate with an HI titer of 512. A complete genome of NDV was obtained using next-generation sequencing. Phylogenetic analysis based on the complete CDS F gene grouped the detected isolate with other viruses from subgenotype VI.2.1.2, class II, including one previously reported in Southern Brazil in 2014. This study reports a comprehensive characterization of the subgenotype VI.2.1.2, which seems to have been circulating in Brazilian urban areas since 2014. Due to the zoonotic risk of NDV, virus surveillance in feral pigeons should also be systematically performed in urban areas.
Collapse
Affiliation(s)
- Luciano M. Thomazelli
- Biomedical Science Institute, University of São Paulo, São Paulo 05508-000, Brazil; (L.M.T.); (D.B.L.O.); (E.S.); (C.M.); (E.G.D.); (N.U.); (G.P.S.); (C.M.); (E.L.D.)
| | - Juliana A. Sinhorini
- Zoonoses Surveillance Division of the Health Surveillance Coordination, Health Department of São Paulo, R. Santa Eulália, 86, São Paulo 02031-020, Brazil; (J.A.S.); (T.C.M.B.); (G.C.V.C.)
| | - Danielle B. L. Oliveira
- Biomedical Science Institute, University of São Paulo, São Paulo 05508-000, Brazil; (L.M.T.); (D.B.L.O.); (E.S.); (C.M.); (E.G.D.); (N.U.); (G.P.S.); (C.M.); (E.L.D.)
- Zoonoses Surveillance Division of the Health Surveillance Coordination, Health Department of São Paulo, R. Santa Eulália, 86, São Paulo 02031-020, Brazil; (J.A.S.); (T.C.M.B.); (G.C.V.C.)
| | - Terezinha Knöbl
- Hospital Israelita Albert Einstein, São Paulo 05652-900, Brazil
| | - Tatiana C. M. Bosqueiro
- Avian Medicine Laboratory, Veterinary Medicine and Animal Science School, University of São Paulo, Butantã, São Paulo 05508-270, Brazil;
| | - Elder Sano
- Biomedical Science Institute, University of São Paulo, São Paulo 05508-000, Brazil; (L.M.T.); (D.B.L.O.); (E.S.); (C.M.); (E.G.D.); (N.U.); (G.P.S.); (C.M.); (E.L.D.)
- Zoonoses Surveillance Division of the Health Surveillance Coordination, Health Department of São Paulo, R. Santa Eulália, 86, São Paulo 02031-020, Brazil; (J.A.S.); (T.C.M.B.); (G.C.V.C.)
| | - Gladyston C. V. Costa
- Zoonoses Surveillance Division of the Health Surveillance Coordination, Health Department of São Paulo, R. Santa Eulália, 86, São Paulo 02031-020, Brazil; (J.A.S.); (T.C.M.B.); (G.C.V.C.)
| | - Cairo Monteiro
- Biomedical Science Institute, University of São Paulo, São Paulo 05508-000, Brazil; (L.M.T.); (D.B.L.O.); (E.S.); (C.M.); (E.G.D.); (N.U.); (G.P.S.); (C.M.); (E.L.D.)
| | - Erick G. Dorlass
- Biomedical Science Institute, University of São Paulo, São Paulo 05508-000, Brazil; (L.M.T.); (D.B.L.O.); (E.S.); (C.M.); (E.G.D.); (N.U.); (G.P.S.); (C.M.); (E.L.D.)
| | - Nathalia Utecht
- Biomedical Science Institute, University of São Paulo, São Paulo 05508-000, Brazil; (L.M.T.); (D.B.L.O.); (E.S.); (C.M.); (E.G.D.); (N.U.); (G.P.S.); (C.M.); (E.L.D.)
| | - Guilherme P. Scagion
- Biomedical Science Institute, University of São Paulo, São Paulo 05508-000, Brazil; (L.M.T.); (D.B.L.O.); (E.S.); (C.M.); (E.G.D.); (N.U.); (G.P.S.); (C.M.); (E.L.D.)
| | - Carla Meneguin
- Biomedical Science Institute, University of São Paulo, São Paulo 05508-000, Brazil; (L.M.T.); (D.B.L.O.); (E.S.); (C.M.); (E.G.D.); (N.U.); (G.P.S.); (C.M.); (E.L.D.)
| | - Laura M. N. Silva
- Graduate Program in Experimental Epidemiology Applied to Zoonoses, Veterinary Medicine and Animal Science School, University of São Paulo, São Paulo 05508-270, Brazil; (L.M.N.S.); (M.V.S.M.)
| | - Maria Vitória S. Moraes
- Graduate Program in Experimental Epidemiology Applied to Zoonoses, Veterinary Medicine and Animal Science School, University of São Paulo, São Paulo 05508-270, Brazil; (L.M.N.S.); (M.V.S.M.)
| | - Larissa M. Bueno
- Department of Veterinary Medicine, FZEA-USP, University of Sao Paulo, Pirassununga 13635-900, Brazil;
| | - Dilmara Reischak
- Federal Laboratory for Agricultural Defense in Sao Paulo (LFDA-SP), Animal Diagnostics Unit, Rua Raul Ferrari, s/n°, Campinas 13100-105, Brazil;
| | - Adriano O. T. Carrasco
- Department of Veterinary Medicine, State University of the Midwest, Alameda Élio Antonio Dalla Vecchia, 838, Guarapuava 85040-167, Brazil;
| | - Clarice W. Arns
- Department of Genetics, Evolution and Bioagents, Institute of Biology, University of Campinas—UNICAMP, P.O. Box 6109, Campinas 13083-970, Brazil;
| | - Helena L. Ferreira
- Graduate Program in Experimental Epidemiology Applied to Zoonoses, Veterinary Medicine and Animal Science School, University of São Paulo, São Paulo 05508-270, Brazil; (L.M.N.S.); (M.V.S.M.)
- Department of Veterinary Medicine, FZEA-USP, University of Sao Paulo, Pirassununga 13635-900, Brazil;
- Correspondence: ; Tel.: +55-19-3565-4385
| | - Edison L. Durigon
- Biomedical Science Institute, University of São Paulo, São Paulo 05508-000, Brazil; (L.M.T.); (D.B.L.O.); (E.S.); (C.M.); (E.G.D.); (N.U.); (G.P.S.); (C.M.); (E.L.D.)
| |
Collapse
|
7
|
Ul-Rahman A, Ishaq HM, Raza MA, Shabbir MZ. Zoonotic potential of Newcastle disease virus: Old and novel perspectives related to public health. Rev Med Virol 2021; 32:e2246. [PMID: 33971048 DOI: 10.1002/rmv.2246] [Citation(s) in RCA: 11] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/28/2021] [Accepted: 05/04/2021] [Indexed: 12/26/2022]
Abstract
Newcastle disease virus (NDV) has a worldwide distribution, causing lethal infection in a wide range of avian species. Affected birds develop respiratory, digestive and neurologic symptoms with profound immunosuppression. Mild systemic Newcastle disease (ND) infection restricted to the respiratory and neurological systems can be observed in humans and other non-avian hosts. Evidence of ND infection and its genome-based detection have been reported in Bovidae (cattle and sheep), Mustelidae (mink), Cercetidae (hamster), Muridae (mice), Leporidae (rabbit), Camelidae (camel), Suidae (pig), Cercophithecidae (monkeys) and Hominidae (humans). Owing to frequent ND outbreaks in poultry workers, individuals engaged in the veterinary field, including poultry production or evisceration and vaccine production units have constantly been at a much higher risk than the general population. A lethal form of infection has been described in immunocompromised humans and non-avian species including mink, pig and cattle demonstrating the capability of NDV to cross species barriers. Therefore, contact with infectious material and/or affected birds can pose a risk of zoonosis and raise public health concerns. The broad and expanding host range of NDV and its maintenance within non-avian species hampers disease control, particularly in disease-endemic settings.
Collapse
Affiliation(s)
- Aziz Ul-Rahman
- Faculty of Veterinary and Animal Sciences, Muhammad Nawaz Shareef University of Agriculture, Multan, Pakistan
| | - Hafiz Muhammad Ishaq
- Faculty of Veterinary and Animal Sciences, Muhammad Nawaz Shareef University of Agriculture, Multan, Pakistan
| | - Muhammad Asif Raza
- Faculty of Veterinary and Animal Sciences, Muhammad Nawaz Shareef University of Agriculture, Multan, Pakistan
| | - Muhammad Zubair Shabbir
- Quality Operations Laboratory, University of Veterinary and Animal Sciences, Lahore, Pakistan
| |
Collapse
|
8
|
A comparative phylogenomic analysis of avian avulavirus 1 isolated from non-avian hosts: conquering new frontiers of zoonotic potential among species. Arch Virol 2019; 164:1771-1780. [PMID: 31076910 DOI: 10.1007/s00705-019-04276-z] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/02/2019] [Accepted: 04/07/2019] [Indexed: 12/17/2022]
Abstract
A number of avian avulavirus 1 (AAvV 1) isolates have been reported from avian and non-avian hosts worldwide with varying clinical consequences. In this regard, robust surveillance coupled with advanced diagnostics, genomic analysis, and disease modelling has provided insight into the molecular epidemiology and evolution of this virus. The genomic and evolutionary characteristics of AAvV 1 isolates originating from avian hosts have been well studied, but those originating from non-avian hosts have not. Here, we report a comparative genomic and evolutionary analysis of so-far reported AAvV 1 isolates originating from hosts other than avian species (humans, mink and swine). Phylogenetic analysis showed that AAvV 1 isolates clustered in five distinct genotypes (I, II, VI, VII and XIII). Further analysis revealed clustering of isolates into clades distant enough to be considered distinct subgenotypes, along with a few substitutions in several significant motifs. Although further investigation is needed, the clustering of AAvV 1 strains isolated from non-avian hosts into novel subgenotypes and the presence of substitutions in important structural and biological motifs suggest that this virus can adapt to novel hosts and therefore could have zoonotic potential.
Collapse
|
9
|
Complete Genome Sequences of Three Related Avian Avulavirus 1 Isolates from Poultry Farmers in Pakistan. GENOME ANNOUNCEMENTS 2018; 6:6/18/e00361-18. [PMID: 29724841 PMCID: PMC5940958 DOI: 10.1128/genomea.00361-18] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Subscribe] [Scholar Register] [Indexed: 12/02/2022]
Abstract
Avian avulavirus 1 infects multiple avian hosts, and rare reports of human infection have been noted throughout the last century. Here, we report the complete genome sequences of three isolates of avulavirus 1 collected from poultry farmers in Pakistan exhibiting mild respiratory signs.
Collapse
|