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Beccari G, Tini F, Foroud NA, Ederli L, Gardiner DM, Benfield AH, Harris LJ, Sulyok M, Romani R, Bellezza I, Covarelli L. A comparison between the role of enniatins and deoxynivalenol in Fusarium virulence on different tissues of common wheat. BMC PLANT BIOLOGY 2024; 24:463. [PMID: 38802782 PMCID: PMC11129500 DOI: 10.1186/s12870-024-04945-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/23/2024] [Accepted: 03/26/2024] [Indexed: 05/29/2024]
Abstract
BACKGROUND Fusarium graminearum and Fusarium avenaceum are two of the most important causal agents of Fusarium head blight (FHB) of wheat. They can produce mycotoxins that accumulate in infected wheat heads, including deoxynivalenol (DON) and enniatins (ENNs), produced by F. graminearum and F. avenaceum, respectively. While the role of DON as a virulence factor in F. graminearum toward wheat is well known, ENNs in F. avenaceum has been poorly explored. Results obtained to-date indicate that ENNs may confer an advantage to F. avenaceum only on particular hosts. RESULTS In this study, with the use of ENN-producing and ENN non-producing F. avenaceum strains, the role of ENNs on F. avenaceum virulence was investigated on the root, stem base and head of common wheat, and compared with the role of DON, using DON-producing and DON non-producing F. graminearum strains. The DON-producing F. graminearum strain showed a significantly higher ability to cause symptoms and colonise each of the tested tissues than the non-producing strain. On the other hand, the ability to produce ENNs increased initial symptoms of the disease and fungal biomass accumulation, measured by qPCR, only in wheat heads, and not in roots or stem bases. LC-MS/MS analysis was used to confirm the presence of ENNs and DON in the different strains, and results, both in vitro and in wheat heads, were consistent with the genetics of each strain. CONCLUSION While the key role of DON on F. graminearum virulence towards three different wheat tissues was noticeable, ENNs seemed to have a role only in influencing F. avenaceum virulence on common wheat heads probably due to an initial delay in the appearance of symptoms.
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Affiliation(s)
- Giovanni Beccari
- Department of Agricultural, Food and Environmental Sciences, University of Perugia, Perugia, Italy
| | - Francesco Tini
- Department of Agricultural, Food and Environmental Sciences, University of Perugia, Perugia, Italy.
| | - Nora A Foroud
- Lethbridge Research and Development Centre, Agriculture and Agri-Food Canada, Lethbridge, Canada
| | - Luisa Ederli
- Department of Agricultural, Food and Environmental Sciences, University of Perugia, Perugia, Italy
| | | | - Aurelie H Benfield
- School of Biomedical Sciences, Faculty of Health, Queensland University of Technology, Translational Research Institute, Brisbane, Australia
| | - Linda J Harris
- Ottawa Research and Development Centre, Agriculture and Agri-Food Canada, Ottawa, Canada
| | - Michael Sulyok
- Department of Agrobiotechnology (IFA-Tulln), Institute of Bioanalytics and Agro-Metabolomics, University of Natural Resources and Life Sciences, Vienna, Tulln, Austria
| | - Roberto Romani
- Department of Agricultural, Food and Environmental Sciences, University of Perugia, Perugia, Italy
| | - Ilaria Bellezza
- Department of Medicine and Surgery, University of Perugia, Perugia, Italy
| | - Lorenzo Covarelli
- Department of Agricultural, Food and Environmental Sciences, University of Perugia, Perugia, Italy
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Valenti I, Tini F, Sevarika M, Agazzi A, Beccari G, Bellezza I, Ederli L, Grottelli S, Pasquali M, Romani R, Saracchi M, Covarelli L. Impact of Enniatin and Deoxynivalenol Co-Occurrence on Plant, Microbial, Insect, Animal and Human Systems: Current Knowledge and Future Perspectives. Toxins (Basel) 2023; 15:271. [PMID: 37104209 PMCID: PMC10144843 DOI: 10.3390/toxins15040271] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/09/2023] [Revised: 03/30/2023] [Accepted: 03/31/2023] [Indexed: 04/08/2023] Open
Abstract
Fusarium mycotoxins commonly contaminate agricultural products resulting in a serious threat to both animal and human health. The co-occurrence of different mycotoxins in the same cereal field is very common, so the risks as well as the functional and ecological effects of mycotoxins cannot always be predicted by focusing only on the effect of the single contaminants. Enniatins (ENNs) are among the most frequently detected emerging mycotoxins, while deoxynivalenol (DON) is probably the most common contaminant of cereal grains worldwide. The purpose of this review is to provide an overview of the simultaneous exposure to these mycotoxins, with emphasis on the combined effects in multiple organisms. Our literature analysis shows that just a few studies on ENN-DON toxicity are available, suggesting the complexity of mycotoxin interactions, which include synergistic, antagonistic, and additive effects. Both ENNs and DON modulate drug efflux transporters, therefore this specific ability deserves to be explored to better understand their complex biological role. Additionally, future studies should investigate the interaction mechanisms of mycotoxin co-occurrence on different model organisms, using concentrations closer to real exposures.
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Affiliation(s)
- Irene Valenti
- Department of Food, Environmental and Nutritional Sciences, University of Milan, 20133 Milan, Italy; (I.V.); (M.P.); (M.S.)
| | - Francesco Tini
- Department of Agricultural, Food and Environmental Sciences, University of Perugia, 06121 Perugia, Italy; (M.S.); (G.B.); (L.E.); (R.R.); (L.C.)
| | - Milos Sevarika
- Department of Agricultural, Food and Environmental Sciences, University of Perugia, 06121 Perugia, Italy; (M.S.); (G.B.); (L.E.); (R.R.); (L.C.)
| | - Alessandro Agazzi
- Department of Veterinary Medicine and Animal Sciences, University of Milan, 26900 Lodi, Italy;
| | - Giovanni Beccari
- Department of Agricultural, Food and Environmental Sciences, University of Perugia, 06121 Perugia, Italy; (M.S.); (G.B.); (L.E.); (R.R.); (L.C.)
| | - Ilaria Bellezza
- Department of Medicine and Surgery, University of Perugia, 06132 Perugia, Italy; (I.B.); (S.G.)
| | - Luisa Ederli
- Department of Agricultural, Food and Environmental Sciences, University of Perugia, 06121 Perugia, Italy; (M.S.); (G.B.); (L.E.); (R.R.); (L.C.)
| | - Silvia Grottelli
- Department of Medicine and Surgery, University of Perugia, 06132 Perugia, Italy; (I.B.); (S.G.)
| | - Matias Pasquali
- Department of Food, Environmental and Nutritional Sciences, University of Milan, 20133 Milan, Italy; (I.V.); (M.P.); (M.S.)
| | - Roberto Romani
- Department of Agricultural, Food and Environmental Sciences, University of Perugia, 06121 Perugia, Italy; (M.S.); (G.B.); (L.E.); (R.R.); (L.C.)
| | - Marco Saracchi
- Department of Food, Environmental and Nutritional Sciences, University of Milan, 20133 Milan, Italy; (I.V.); (M.P.); (M.S.)
| | - Lorenzo Covarelli
- Department of Agricultural, Food and Environmental Sciences, University of Perugia, 06121 Perugia, Italy; (M.S.); (G.B.); (L.E.); (R.R.); (L.C.)
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Hodgson LM, Cox BA, Lopez-Ruiz FJ, Gibberd MR, Thomas GJ, Zerihun A. Optimized Sample Processing Pipeline for PCR-Based Fungicide Resistance Quantification of Stubble-Borne Fungal Pathogens. PHYTOPATHOLOGY 2023; 113:321-333. [PMID: 36075052 DOI: 10.1094/phyto-07-22-0239-r] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/15/2023]
Abstract
Globally, yield losses associated with failed crop protection due to fungicide-resistant pathogens present an increasing problem. For stubble-borne pathogens, assessment of crop residues during the off-season could provide early fungicide resistance quantification for informed management decisions to mitigate yield losses. However, stubble assessment is hampered by assay inhibitors that are derived from decaying organic matter. To overcome assay inhibition from weathered stubble samples, we used a systems approach to quantify the frequency of resistance to demethylase inhibitor fungicides of the barley pathogen Pyrenophora teres f. teres. The system canvassed (i) 10 ball-milling conditions; (ii) four DNA extraction methodologies; and (iii) three column purification techniques for the provision of sufficient yield, quality, and purity of fungal DNA for a PCR-based fungicide resistance assay. Results show that DNA quantity and purity differed within each of the above three categories, with the optimized pipeline being (i) ball-milling samples in a 50-ml stainless steel canister for 5 min using a 20-mm ball at 30 revolutions s-1; (ii) a modified Brandfass method (extracted 64% more DNA than other methods assessed); and (iii) use of silica resin columns for the highest DNA concentration with optimal DNA purity. The chip-digital PCR assay, which quantified fungicide resistance from field samples, was unaffected by the DNA extraction method or purification technique, provided that thresholds of template quantity and purity were satisfied. In summary, this study has developed molecular pipeline options for pathogen fungicide resistance quantification from cereal stubbles, which can guide management for improved crop protection outcomes.
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Affiliation(s)
- Leon M Hodgson
- Centre for Crop and Disease Management, School of Molecular and Life Sciences, Curtin University, Bentley, WA 6102, Australia
| | - Belinda A Cox
- School of Molecular and Life Sciences, Curtin University, Bentley, WA 6102, Australia
| | - Francisco J Lopez-Ruiz
- Centre for Crop and Disease Management, School of Molecular and Life Sciences, Curtin University, Bentley, WA 6102, Australia
| | - Mark R Gibberd
- Centre for Crop and Disease Management, School of Molecular and Life Sciences, Curtin University, Bentley, WA 6102, Australia
| | - Geoff J Thomas
- Department of Primary Industries and Regional Development, South Perth, WA 6151, Australia
| | - Ayalsew Zerihun
- Centre for Crop and Disease Management, School of Molecular and Life Sciences, Curtin University, Bentley, WA 6102, Australia
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Mathematical modelling of the interaction of winter wheat (Triticum aestivum) and Fusarium species (Fusarium spp.). Ecol Modell 2022. [DOI: 10.1016/j.ecolmodel.2021.109856] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
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Jung JY, Kim JH, Baek M, Cho C, Cho J, Kim J, Pavan W, Kim KH. Adapting to the projected epidemics of Fusarium head blight of wheat in Korea under climate change scenarios. FRONTIERS IN PLANT SCIENCE 2022; 13:1040752. [PMID: 36582642 PMCID: PMC9793406 DOI: 10.3389/fpls.2022.1040752] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/09/2022] [Accepted: 11/23/2022] [Indexed: 05/19/2023]
Abstract
Fusarium head blight (FHB) of wheat, mainly caused by Fusarium graminearum Schwabe, is an emerging threat to wheat production in Korea under a changing climate. The disease occurrence and accumulation of associated trichothecene mycotoxins in wheat kernels strongly coincide with warm and wet environments during flowering. Recently, the International Panel for Climate Change released the 6th Coupled Model Intercomparison Project (CMIP6) climate change scenarios with shared socioeconomic pathways (SSPs). In this study, we adopted GIBSIM, an existing mechanistic model developed in Brazil to estimate the risk infection index of wheat FHB, to simulate the potential FHB epidemics in Korea using the SSP245 and SSP585 scenarios of CMIP6. The GIBSIM model simulates FHB infection risk from airborne inoculum density and infection frequency using temperature, precipitation, and relative humidity during the flowering period. First, wheat heading dates, during which GIBSIM runs, were predicted over suitable areas of winter wheat cultivation using a crop development rate model for wheat phenology and downscaled SSP scenarios. Second, an integrated model combining all results of wheat suitability, heading dates, and FHB infection risks from the SSP scenarios showed a gradual increase in FHB epidemics towards 2100, with different temporal and spatial patterns of varying magnitudes depending on the scenarios. These results indicate that proactive management strategies need to be seriously considered in the near future to minimize the potential impacts of the FHB epidemic under climate change in Korea. Therefore, available wheat cultivars with early or late heading dates were used in the model simulations as a realistic adaptation measure. As a result, wheat cultivars with early heading dates showed significant decreases in FHB epidemics in future periods, emphasizing the importance of effective adaptation measures against the projected increase in FHB epidemics in Korea under climate change.
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Affiliation(s)
- Jin-Yong Jung
- Department of Agricultural Biotechnology, Seoul National University, Seoul, South Korea
| | - Jin-Hee Kim
- National Center for Agro-Meteorology, Seoul National University, Seoul, South Korea
| | - Minju Baek
- Department of Agricultural Biotechnology, Seoul National University, Seoul, South Korea
| | - Chuloh Cho
- Wheat Research Team, National Institute of Crop Science, Wanju, South Korea
| | - Jaepil Cho
- Convergence Center for Watershed Management, Integrated Watershed Management Institute, Suwon, South Korea
| | - Junhwan Kim
- Korea National University of Agriculture and Fisheries, Jeonju, South Korea
| | - Willingthon Pavan
- International Fertilizer Development Center, Muscle Shoals, AL, United States
- Graduate Program in Applied Computing, University of Passo Fundo, Passo Fundo, RS, Brazil
| | - Kwang-Hyung Kim
- Department of Agricultural Biotechnology, Seoul National University, Seoul, South Korea
- *Correspondence: Kwang-Hyung Kim,
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Moparthi S, Burrows M, Mgbechi-Ezeri J, Agindotan B. Fusarium spp. Associated With Root Rot of Pulse Crops and Their Cross-Pathogenicity to Cereal Crops in Montana. PLANT DISEASE 2021; 105:548-557. [PMID: 32870113 DOI: 10.1094/pdis-04-20-0800-re] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/11/2023]
Abstract
Root rot caused by Fusarium species is a major problem in the pulse growing regions of Montana. Fusarium isolates (n = 112) were obtained from seeds and roots of chickpea, dry pea, and lentil. Isolates were identified by comparing the sequences of the internal transcribed spacer region and the translation elongation factor 1-α in Fusarium-ID database. Fusarium avenaceum was the most abundant species (28%), followed by F. acuminatum (21%), F. poae (13%), F. oxysporum (8%), F. culmorum (6%), F. redolens (6%), F. sporotrichioides (6%), F. solani (4%), F. graminearum (2%), F. torulosum (2%), and F. tricinctum (0.9%). The aggressiveness of a subset of 50 isolates that represent various sources of isolation was tested on three pulse crops and two cereal crops. Nonparametric analysis of variance conducted on ranks of disease severity indicated that F. avenaceum and F. solani isolates were highly aggressive on pea and chickpea. In lentil, F. avenaceum and F. culmorum were highly aggressive. In barley, F. avenaceum, F. solani, F. culmorum, and F. graminearum were highly aggressive. In wheat, F. avenaceum, F. graminearum, and F. culmorum were highly aggressive. Two F. avenaceum isolates were highly aggressive across all the crops tested and found to be cross-pathogenic. One isolate of F. culmorum and an isolate of F. graminearum obtained from chickpea and lentil seed were highly aggressive on barley and wheat. The results indicate that multiple Fusarium spp. from seeds and roots can cause root rot on both pulse and cereal crops. Rotating these crops may still lead to an increase in inoculum levels, making crop rotation limited in efficacy as a disease management strategy.
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Affiliation(s)
- Swarnalatha Moparthi
- Department of Plant Sciences & Plant Pathology, Montana State University, Bozeman, MT 59717
| | - Mary Burrows
- Department of Plant Sciences & Plant Pathology, Montana State University, Bozeman, MT 59717
| | | | - Bright Agindotan
- Science & Technology Beltsville Laboratory, USDA APHIS PPQ, Beltsville, MD 20705
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Karlsson I, Persson P, Friberg H. Fusarium Head Blight From a Microbiome Perspective. Front Microbiol 2021; 12:628373. [PMID: 33732223 PMCID: PMC7956947 DOI: 10.3389/fmicb.2021.628373] [Citation(s) in RCA: 40] [Impact Index Per Article: 13.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/11/2020] [Accepted: 02/08/2021] [Indexed: 11/25/2022] Open
Abstract
The fungal genus Fusarium causes several diseases in cereals, including Fusarium head blight (FHB). A number of Fusarium species are involved in disease development and mycotoxin contamination. Lately, the importance of interactions between plant pathogens and the plant microbiome has been increasingly recognized. In this review, we address the significance of the cereal microbiome for the development of Fusarium-related diseases. Fusarium fungi may interact with the host microbiome at multiple stages during their life cycles and in different plant organs including roots, stems, leaves, heads, and crop residues. There are interactions between Fusarium and other fungi and bacteria as well as among Fusarium species. Recent studies have provided a map of the cereal microbiome and revealed how different biotic and abiotic factors drive microbiome assembly. This review synthesizes the current understanding of the cereal microbiome and the implications for Fusarium infection, FHB development, disease control, and mycotoxin contamination. Although annual and regional variations in predominant species are significant, much research has focused on Fusarium graminearum. Surveying the total Fusarium community in environmental samples is now facilitated with novel metabarcoding methods. Further, infection with multiple Fusarium species has been shown to affect disease severity and mycotoxin contamination. A better mechanistic understanding of such multiple infections is necessary to be able to predict the outcome in terms of disease development and mycotoxin production. The knowledge on the composition of the cereal microbiome under different environmental and agricultural conditions is growing. Future studies are needed to clearly link microbiome structure to Fusarium suppression in order to develop novel disease management strategies for example based on conservation biological control approaches.
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Affiliation(s)
- Ida Karlsson
- Department of Crop Production Ecology, Swedish University of Agricultural Sciences, Uppsala, Sweden
| | - Paula Persson
- Department of Crop Production Ecology, Swedish University of Agricultural Sciences, Uppsala, Sweden
| | - Hanna Friberg
- Department of Forest Mycology and Plant Pathology, Swedish University of Agricultural Sciences, Uppsala, Sweden
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Vandicke J, De Visschere K, Deconinck S, Leenknecht D, Vermeir P, Audenaert K, Haesaert G. Uncovering the biofumigant capacity of allyl isothiocyanate from several Brassicaceae crops against Fusarium pathogens in maize. JOURNAL OF THE SCIENCE OF FOOD AND AGRICULTURE 2020; 100:5476-5486. [PMID: 32564371 DOI: 10.1002/jsfa.10599] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/30/2020] [Revised: 06/12/2020] [Accepted: 06/21/2020] [Indexed: 06/11/2023]
Abstract
BACKGROUND Driven by environmental concerns, chemical fumigants are no longer allowed in many countries. Therefore, other strategies for reducing fungal inoculum in soils and on crop debris are being explored. In the present study, several Brassicaceae crops were screened for their potential to control Fusarium gramineaum and Fusarium poae mycelial growth in an in vitro inverted Petri dish experiment. Volatile production was measured using gas chromatography-mass spectrometry headspace analysis. A selection of cultivars from each crop species was further investigated using a pot experiment with maize. RESULTS Ethiopian mustard (Brassica carinata) and brown mustard (Brassica juncea) released volatile allyl isothiocyanate (AITC) and a higher concentration of AITC was correlated with a better fungal growth reduction in the in vitro screening. Brown mustard cultivar Etamine completely inhibited growth of both Fusarium spp. Pure AITC in a solution with methanol resulted in a sigmoid dose-response curve for both Fusarium spp. tested. Fusarium poae appeared to be more tolerant to AITC than F. graminearum. A pot experiment revealed that the incorporation of brown mustard plant material could alleviate the clear negative effect of F. graminearum infection on maize growth. CONCLUSION The present study demonstrated the correlation between the fungistatic effect of biofumigation crops on Fusarium spp. and their production of volatile AITC in vitro, without the addition of exogenous enzymes, and confirmed the biofumigation potential of brown mustard in a pot experiment with maize. These results may help farmers when selecting a green manure crop suitable for biofumigation. © 2020 Society of Chemical Industry.
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Affiliation(s)
- Jonas Vandicke
- Department of Plants and Crops, Faculty of Bioscience Engineering, Ghent University, Ghent, Belgium
| | - Katrien De Visschere
- Biosciences and Food Sciences Department, Faculty Science and Technology, University College Ghent, Ghent, Belgium
| | - Sofie Deconinck
- Department of Plants and Crops, Faculty of Bioscience Engineering, Ghent University, Ghent, Belgium
| | - Diederik Leenknecht
- Department of Green Chemistry and Technology, Faculty of Bioscience Engineering, Ghent University, Ghent, Belgium
| | - Pieter Vermeir
- Department of Green Chemistry and Technology, Faculty of Bioscience Engineering, Ghent University, Ghent, Belgium
| | - Kris Audenaert
- Department of Plants and Crops, Faculty of Bioscience Engineering, Ghent University, Ghent, Belgium
| | - Geert Haesaert
- Department of Plants and Crops, Faculty of Bioscience Engineering, Ghent University, Ghent, Belgium
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Hofgaard I, Aamot H, Seehusen T, Riley H, Dill-Macky R, Holen B, Brodal G. Fusarium and mycotoxin content of harvested grain was not related to tillage intensity in Norwegian spring wheat fields. WORLD MYCOTOXIN J 2020. [DOI: 10.3920/wmj2020.2575] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
Abstract
To mitigate the risk of erosion and nutrient runoff, reduced tillage has become more prevalent in Norway. Within within recent decades, there have been some years with relatively high occurrence of Fusarium head blight and mycotoxins in Norwegian cereal grain. This is thought to have been caused by an increased inoculum potential (IP) of Fusarium spp. due to larger amount of crop residues remaining on the soil surface, in combination with weather conditions promoting fungal growth and infection of cereal plants. The objective of this work was to elucidate the influence of different tillage practices on the IP of Fusarium spp. and the subsequent Fusarium-infection and mycotoxin contamination of spring wheat grain at harvest. Tillage trials were conducted at two locations in southeast Norway (Solør and Toten) over three years, 2010-2012. Residues of wheat from the previous year were collected in spring. Fusarium avenaceum and Fusarium graminearum were the most common Fusarium species recorded on wheat straw residues. IP was calculated as the percentage of the residues infested with Fusarium spp. multiplied by the proportion of the soil surface covered with residues. The IP of Fusarium spp. was lower in ploughed plots compared to those tilled with harrowing only. Ploughing in spring resulted in a similarly low IP as autumn ploughing. In contrast, harrowing in autumn generally reduced IP more than did spring harrowing. The mycotoxin levels in the harvested wheat were generally low, except for deoxynivalenol at high levels in Solør 2011. Despite a lower IP of ploughed versus harrowed plots, this was not reflected in the content of Fusarium and mycotoxins in harvested grain. The Fusarium species that dominated in the residues examined in this study were the same as those detected in the harvested grain, supporting the finding that residues are an important source of inoculum.
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Affiliation(s)
- I.S. Hofgaard
- NIBIO, Norwegian Institute of Bioeconomy Research, P.O. box 115, 1431 Ås, Norway
| | - H.U. Aamot
- NIBIO, Norwegian Institute of Bioeconomy Research, P.O. box 115, 1431 Ås, Norway
| | - T. Seehusen
- NIBIO, Norwegian Institute of Bioeconomy Research, P.O. box 115, 1431 Ås, Norway
| | - H. Riley
- NIBIO, Norwegian Institute of Bioeconomy Research, P.O. box 115, 1431 Ås, Norway
| | - R. Dill-Macky
- NIBIO, Norwegian Institute of Bioeconomy Research, P.O. box 115, 1431 Ås, Norway
- Department of Plant Pathology, University of Minnesota, St. Paul, MN, 55108, USA
| | - B.M. Holen
- NIBIO, Norwegian Institute of Bioeconomy Research, P.O. box 115, 1431 Ås, Norway
| | - G. Brodal
- NIBIO, Norwegian Institute of Bioeconomy Research, P.O. box 115, 1431 Ås, Norway
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Abstract
Mycotoxins are secondary metabolites of microscopic fungi, which commonly contaminate cereal grains. Contamination of small-grain cereals and maize with toxic metabolites of fungi, both pathogenic and saprotrophic, is one of the particularly important problems in global agriculture. Fusarium species are among the dangerous cereal pathogens with a high toxicity potential. Secondary metabolites of these fungi, such as deoxynivalenol, zearalenone and fumonisin B1 are among five most important mycotoxins on a European and world scale. The use of various methods to limit the development of Fusarium cereal head diseases and grain contamination with mycotoxins, before and after harvest, is an important element of sustainable agriculture and production of safe food. The applied strategies utilize chemical and non-chemical methods, including agronomic, physical and biological treatments. Biological methods now occupy a special place in plant protection as an element of biocontrol of fungal pathogens by inhibiting their development and reducing mycotoxins in grain. According to the literature, Good Agricultural Practices are the best line of defense for controlling Fusarium toxin contamination of cereal and maize grains. However, fluctuations in weather conditions can significantly reduce the effectiveness of plants protection methods against infection with Fusarium spp. and grain accumulation of mycotoxins.
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Cowger C, Ward TJ, Nilsson K, Arellano C, McCormick SP, Busman M. Regional and field-specific differences in Fusarium species and mycotoxins associated with blighted North Carolina wheat. Int J Food Microbiol 2020; 323:108594. [PMID: 32229393 DOI: 10.1016/j.ijfoodmicro.2020.108594] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/15/2019] [Revised: 03/06/2020] [Accepted: 03/18/2020] [Indexed: 01/17/2023]
Abstract
Worldwide, while Fusarium graminearum is the main causal species of Fusarium head blight (FHB) in small-grain cereals, a diversity of FHB-causing species belonging to different species complexes has been found in most countries. In the U.S., FHB surveys have focused on the Fusarium graminearum species complex (FGSC) and the frequencies of 3-ADON, 15-ADON, and nivalenol (NIV) chemotypes. A large-scale survey was undertaken across the state of North Carolina in 2014 to explore the frequency and distribution of F. graminearum capable of producing NIV, which is not monitored at grain intake points. Symptomatic wheat spikes were sampled from 59 wheat fields in 24 counties located in three agronomic zones typical of several states east of the Appalachian Mountains: Piedmont, Coastal Plain, and Tidewater. Altogether, 2197 isolates were identified to species using DNA sequence-based methods. Surprisingly, although F. graminearum was the majority species detected, species in the Fusarium tricinctum species complex (FTSC) that produce "emerging mycotoxins" were frequent, and even dominant in some fields. The FTSC percentage was 50-100% in four fields, 30-49% in five fields, 20-29% in five fields, and < 20% in the remaining 45 fields. FTSC species were at significantly higher frequency in the Coastal Plain than in the Piedmont or Tidewater (P < .05). Moniliformin concentrations in samples ranged from 0.0 to 38.7 μg g-1. NIV producing isolates were rare statewide (2.2%), and never >12% in a single field, indicating that routine testing for NIV is probably unnecessary. The patchy distribution of FTSC species in wheat crops demonstrated the need to investigate the potential importance of their mycotoxins and the factors that allow them to sometimes outcompete trichothecene producers. An increased sampling intensity of wheat fields led to the unexpected discovery of a minority FHB-causing population.
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Affiliation(s)
- Christina Cowger
- United States Department of Agriculture-Agricultural Research Service (USDA-ARS), USA; Department of Entomology and Plant Pathology, North Carolina State University, Raleigh, NC 27695, USA.
| | - Todd J Ward
- USDA-ARS, 1815 North University Street, Peoria, IL 61604, USA
| | - Kathryn Nilsson
- Department of Entomology and Plant Pathology, North Carolina State University, Raleigh, NC 27695, USA
| | - Consuelo Arellano
- Department of Statistics, North Carolina State University, Raleigh, NC 27695, USA
| | | | - Mark Busman
- USDA-ARS, 1815 North University Street, Peoria, IL 61604, USA
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Enniatin Production Influences Fusarium avenaceum Virulence on Potato Tubers, but not on Durum Wheat or Peas. Pathogens 2020; 9:pathogens9020075. [PMID: 31973184 PMCID: PMC7168684 DOI: 10.3390/pathogens9020075] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/23/2019] [Revised: 01/13/2020] [Accepted: 01/14/2020] [Indexed: 11/16/2022] Open
Abstract
Fusarium avenaceum is a generalist pathogen responsible for diseases in numerous crop species. The fungus produces a series of mycotoxins including the cyclohexadepsipeptide enniatins. Mycotoxins can be pathogenicity and virulence factors in various plant–pathogen interactions, and enniatins have been shown to influence aggressiveness on potato tubers. To determine the role of these mycotoxins in other F. avenaceum–host interactions, ENNIATIN SYNTHASE 1 (ESYN1) disruption and overexpression mutants were generated and their ability to infect wheat and peas investigated. As a preliminary study, the transformants were screened for their ability to cause potato tuber necrosis and, consistent with a previous report, enniatin production increased necrotic lesion size on the tubers. By contrast, when the same mutants were assessed in their ability to cause disease in pea roots or durum wheat spikes, no changes in disease symptoms or virulence were observed. While it is known that, at least in the case of wheat, exogenously applied enniatins can cause tissue necrosis, this group of mycotoxins does not appear to be a key factor on its own in disease development on peas or durum wheat.
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Pollard AT, Okubara PA. Real-time PCR quantification of Fusarium avenaceum in soil and seeds. J Microbiol Methods 2019; 157:21-30. [DOI: 10.1016/j.mimet.2018.12.009] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/20/2018] [Revised: 12/11/2018] [Accepted: 12/11/2018] [Indexed: 10/27/2022]
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Urbanek KA, Habrowska-Górczyńska DE, Kowalska K, Stańczyk A, Domińska K, Piastowska-Ciesielska AW. Deoxynivalenol as potential modulator of human steroidogenesis. J Appl Toxicol 2018; 38:1450-1459. [DOI: 10.1002/jat.3623] [Citation(s) in RCA: 25] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/15/2018] [Revised: 02/28/2018] [Accepted: 02/28/2018] [Indexed: 12/19/2022]
Affiliation(s)
- Kinga Anna Urbanek
- Laboratory of Cell Cultures and Genomic Analysis, Department of Comparative Endocrinology; Medical University of Lodz; Poland
| | | | - Karolina Kowalska
- Laboratory of Cell Cultures and Genomic Analysis, Department of Comparative Endocrinology; Medical University of Lodz; Poland
| | - Anna Stańczyk
- Laboratory of Cellular and Molecular Biology; Medical University of Lodz; Poland
| | - Kamila Domińska
- Department of Comparative Endocrinology; Medical University of Lodz; Poland
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15
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Karlsson I, Friberg H, Kolseth AK, Steinberg C, Persson P. Agricultural factors affecting Fusarium communities in wheat kernels. Int J Food Microbiol 2017; 252:53-60. [DOI: 10.1016/j.ijfoodmicro.2017.04.011] [Citation(s) in RCA: 37] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/10/2017] [Revised: 03/30/2017] [Accepted: 04/20/2017] [Indexed: 10/19/2022]
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16
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Palazzini JM, Yerkovich N, Alberione E, Chiotta M, Chulze SN. An integrated dual strategy to control Fusarium graminearum sensu stricto by the biocontrol agent Streptomyces sp. RC 87B under field conditions. ACTA ACUST UNITED AC 2017. [DOI: 10.1016/j.plgene.2016.11.005] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
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17
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Leplat J, Heraud C, Gautheron E, Mangin P, Falchetto L, Steinberg C. Colonization dynamic of various crop residues by Fusarium graminearum monitored through real-time PCR measurements. J Appl Microbiol 2016; 121:1394-1405. [PMID: 27541831 DOI: 10.1111/jam.13259] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/16/2016] [Revised: 08/02/2016] [Accepted: 08/12/2016] [Indexed: 11/30/2022]
Abstract
AIMS To evaluate the effect of the type of crop residues on the colonization dynamic of Fusarium graminearum in soil. METHODS AND RESULTS The ability of F. graminearum to survive in the presence of various crop residues was assessed on Petri dishes and in microcosms. These microcosms comprised soil that had or had not been previously disinfested with or without amendment with various crop residues. The colonization dynamic of F. graminearum was monitored through real-time PCR. Fusarium graminearum development was higher in disinfested soil than in non-disinfested one. The fungal growth was enhanced to various extents according to the type of crop residues, except for mustard residues which inhibited it. The biochemical and physical properties of the residues were likely to account for the differences in the survival of F. graminearum. CONCLUSIONS Fusarium graminearum is a poor competitor in soil but it can use maize, wheat, and rape residues to ensure its survival. Conversely alfalfa, which is assimilated by micro-organisms very easily, avoids long-lasting survival of the fungus. And finally, mustard producing glucosinolates could be used as an intermediate crop to reduce the inoculum amount. SIGNIFICANCE AND IMPACT OF THE STUDY This study is contributing to the knowledge about F. graminearum saprotophic abilities and proposes interesting paths to limit its survival in soil.
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Affiliation(s)
- J Leplat
- Agroécologie, AgroSup Dijon, INRA, Univ. Bourgogne Franche-Comté, F-21000, Dijon, France.
| | - C Heraud
- Agroécologie, AgroSup Dijon, INRA, Univ. Bourgogne Franche-Comté, F-21000, Dijon, France
| | - E Gautheron
- Agroécologie, AgroSup Dijon, INRA, Univ. Bourgogne Franche-Comté, F-21000, Dijon, France
| | - P Mangin
- Experimental Unit of Epoisses, INRA Dijon, F-21110, Bretenières, France
| | - L Falchetto
- Experimental Unit of Epoisses, INRA Dijon, F-21110, Bretenières, France
| | - C Steinberg
- Agroécologie, AgroSup Dijon, INRA, Univ. Bourgogne Franche-Comté, F-21000, Dijon, France
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18
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Ferrigo D, Raiola A, Causin R. Fusarium Toxins in Cereals: Occurrence, Legislation, Factors Promoting the Appearance and Their Management. Molecules 2016; 21:E627. [PMID: 27187340 PMCID: PMC6274039 DOI: 10.3390/molecules21050627] [Citation(s) in RCA: 163] [Impact Index Per Article: 20.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/07/2016] [Revised: 04/11/2016] [Accepted: 05/09/2016] [Indexed: 12/18/2022] Open
Abstract
Fusarium diseases of small grain cereals and maize cause significant yield losses worldwide. Fusarium infections result in reduced grain yield and contamination with mycotoxins, some of which have a notable impact on human and animal health. Regulations on maximum limits have been established in various countries to protect consumers from the harmful effects of these mycotoxins. Several factors are involved in Fusarium disease and mycotoxin occurrence and among them environmental factors and the agronomic practices have been shown to deeply affect mycotoxin contamination in the field. In the present review particular emphasis will be placed on how environmental conditions and stress factors for the crops can affect Fusarium infection and mycotoxin production, with the aim to provide useful knowledge to develop strategies to prevent mycotoxin accumulation in cereals.
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Affiliation(s)
- Davide Ferrigo
- Department of Land, Environment, Agriculture and Forestry, University of Padua, Campus of Agripolis, Viale Università 16, 35020 Legnaro, Padua, Italy.
| | - Alessandro Raiola
- Department of Land, Environment, Agriculture and Forestry, University of Padua, Campus of Agripolis, Viale Università 16, 35020 Legnaro, Padua, Italy.
| | - Roberto Causin
- Department of Land, Environment, Agriculture and Forestry, University of Padua, Campus of Agripolis, Viale Università 16, 35020 Legnaro, Padua, Italy.
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19
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Hofgaard IS, Seehusen T, Aamot HU, Riley H, Razzaghian J, Le VH, Hjelkrem AGR, Dill-Macky R, Brodal G. Inoculum Potential of Fusarium spp. Relates to Tillage and Straw Management in Norwegian Fields of Spring Oats. Front Microbiol 2016; 7:556. [PMID: 27148236 PMCID: PMC4841101 DOI: 10.3389/fmicb.2016.00556] [Citation(s) in RCA: 37] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/29/2016] [Accepted: 04/04/2016] [Indexed: 11/13/2022] Open
Abstract
The increased occurrence of Fusarium-mycotoxins in Norwegian cereals over the last decade, is thought to be caused by increased inoculum resulting from more cereal residues at the soil surface as a result of reduced tillage practices. In addition, weather conditions have increasingly promoted inoculum development and infection by Fusarium species. The objective of this work was to elucidate the influence of different tillage regimes (autumn plowing; autumn harrowing; spring plowing; spring harrowing) on the inoculum potential (IP) and dispersal of Fusarium spp. in spring oats. Tillage trials were conducted at two different locations in southeast Norway from 2010 to 2012. Oat residues from the previous year's crop were collected within a week after sowing for evaluation. IP was calculated as the percentage of residues infested with Fusarium spp. multiplied by the proportion of the soil surface covered with residues. Fusarium avenaceum and F. graminearum were the most common Fusarium species recovered from oat residues. The IP of Fusarium spp. was significantly lower in plowed plots compared to those that were harrowed. Plowing in either the autumn or spring resulted in a low IP. Harrowing in autumn was more effective in reducing IP than the spring harrowing, and IP levels for the spring harrowed treatments were generally higher than all other tillage treatments examined. Surprisingly low levels of F. langsethiae were detected in the residues, although this species is a common pathogen of oat in Norway. The percentage of the residues infested with F. avenaceum, F. graminearum, F. culmorum, and F. langsethiae generally related to the quantity of DNA of the respective Fusarium species determined using quantitative PCR (qPCR). Fusarium dispersal, quantified by qPCR analysis of spore trap samples collected at and after heading, generally corresponded to the IP. Fusarium dispersal was also observed to increase after rainy periods. Our findings are in line with the general understanding that plowing is a means to reduce the IP of Fusarium spp. in cereal fields. The main inoculum source for F. langsethiae remains unclear. Our results will be useful in the development of forecasting tools to calculate the risk of Fusarium in cereals.
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Affiliation(s)
- Ingerd S. Hofgaard
- Division of Biotechnology and Plant Health, Norwegian Institute of Bioeconomy ResearchÅs, Norway
| | - Till Seehusen
- Division of Biotechnology and Plant Health, Norwegian Institute of Bioeconomy ResearchÅs, Norway
| | - Heidi U. Aamot
- Division of Biotechnology and Plant Health, Norwegian Institute of Bioeconomy ResearchÅs, Norway
| | - Hugh Riley
- Division of Biotechnology and Plant Health, Norwegian Institute of Bioeconomy ResearchÅs, Norway
| | - Jafar Razzaghian
- Division of Biotechnology and Plant Health, Norwegian Institute of Bioeconomy ResearchÅs, Norway
| | - Vinh H. Le
- Division of Biotechnology and Plant Health, Norwegian Institute of Bioeconomy ResearchÅs, Norway
| | - Anne-Grete R. Hjelkrem
- Division of Biotechnology and Plant Health, Norwegian Institute of Bioeconomy ResearchÅs, Norway
| | - Ruth Dill-Macky
- Division of Biotechnology and Plant Health, Norwegian Institute of Bioeconomy ResearchÅs, Norway
- Department of Plant Pathology, University of MinnesotaSt. Paul, MN, USA
| | - Guro Brodal
- Division of Biotechnology and Plant Health, Norwegian Institute of Bioeconomy ResearchÅs, Norway
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20
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Lysøe E, Harris LJ, Walkowiak S, Subramaniam R, Divon HH, Riiser ES, Llorens C, Gabaldón T, Kistler HC, Jonkers W, Kolseth AK, Nielsen KF, Thrane U, Frandsen RJN. The genome of the generalist plant pathogen Fusarium avenaceum is enriched with genes involved in redox, signaling and secondary metabolism. PLoS One 2014; 9:e112703. [PMID: 25409087 PMCID: PMC4237347 DOI: 10.1371/journal.pone.0112703] [Citation(s) in RCA: 59] [Impact Index Per Article: 5.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/10/2014] [Accepted: 10/13/2014] [Indexed: 12/03/2022] Open
Abstract
Fusarium avenaceum is a fungus commonly isolated from soil and associated with a wide range of host plants. We present here three genome sequences of F. avenaceum, one isolated from barley in Finland and two from spring and winter wheat in Canada. The sizes of the three genomes range from 41.6–43.1 MB, with 13217–13445 predicted protein-coding genes. Whole-genome analysis showed that the three genomes are highly syntenic, and share>95% gene orthologs. Comparative analysis to other sequenced Fusaria shows that F. avenaceum has a very large potential for producing secondary metabolites, with between 75 and 80 key enzymes belonging to the polyketide, non-ribosomal peptide, terpene, alkaloid and indole-diterpene synthase classes. In addition to known metabolites from F. avenaceum, fuscofusarin and JM-47 were detected for the first time in this species. Many protein families are expanded in F. avenaceum, such as transcription factors, and proteins involved in redox reactions and signal transduction, suggesting evolutionary adaptation to a diverse and cosmopolitan ecology. We found that 20% of all predicted proteins were considered to be secreted, supporting a life in the extracellular space during interaction with plant hosts.
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Affiliation(s)
- Erik Lysøe
- Department of Plant Health and Plant Protection, Bioforsk - Norwegian Institute of Agricultural and Environmental Research, Ås, Norway
- * E-mail:
| | - Linda J. Harris
- Eastern Cereal and Oilseed Research Centre, Agriculture and Agri-Food Canada, Ottawa, Canada
| | - Sean Walkowiak
- Eastern Cereal and Oilseed Research Centre, Agriculture and Agri-Food Canada, Ottawa, Canada
- Department of Biology, Carleton University, Ottawa, Canada
| | - Rajagopal Subramaniam
- Eastern Cereal and Oilseed Research Centre, Agriculture and Agri-Food Canada, Ottawa, Canada
- Department of Biology, Carleton University, Ottawa, Canada
| | - Hege H. Divon
- Section of Mycology, Norwegian Veterinary Institute, Oslo, Norway
| | - Even S. Riiser
- Department of Plant Health and Plant Protection, Bioforsk - Norwegian Institute of Agricultural and Environmental Research, Ås, Norway
| | | | - Toni Gabaldón
- Bioinformatics and Genomics Programme, Centre for Genomic Regulation, Barcelona, Spain
- Universitat Pompeu Fabra, Barcelona, Spain
- Institució Catalana de Recerca i Estudis Avançats, Barcelona, Spain
| | - H. Corby Kistler
- ARS-USDA, Cereal Disease Laboratory, St. Paul, Minnesota, United States of America
| | - Wilfried Jonkers
- ARS-USDA, Cereal Disease Laboratory, St. Paul, Minnesota, United States of America
| | - Anna-Karin Kolseth
- Department of Crop Production Ecology, Swedish University of Agricultural Sciences, Uppsala, Sweden
| | - Kristian F. Nielsen
- Department of Systems Biology, Technical University of Denmark, Lyngby, Denmark
| | - Ulf Thrane
- Department of Systems Biology, Technical University of Denmark, Lyngby, Denmark
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21
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Foroud NA, Chatterton S, Reid LM, Turkington TK, Tittlemier SA, Gräfenhan T. Fusarium Diseases of Canadian Grain Crops: Impact and Disease Management Strategies. Fungal Biol 2014. [DOI: 10.1007/978-1-4939-1188-2_10] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/24/2022]
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22
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Hollister EB, Hu P, Wang AS, Hons FM, Gentry TJ. Differential impacts of brassicaceous and nonbrassicaceous oilseed meals on soil bacterial and fungal communities. FEMS Microbiol Ecol 2012; 83:632-41. [PMID: 23025785 DOI: 10.1111/1574-6941.12020] [Citation(s) in RCA: 56] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/07/2012] [Revised: 09/21/2012] [Accepted: 09/25/2012] [Indexed: 12/01/2022] Open
Abstract
Demand for alternative fuels has sparked renewed interest in the production of biodiesel from oil-rich seeds. Oilseed meals are a byproduct of this process, and given their relatively high nutrient content, land application represents a potential value-added use. In this microcosm-based study, soil microbial community responses to amendments of a glucosinolate-containing brassicaceous oilseed meal (Brassica juncea, mustard), a non-glucosinolate-containing, nonbrassicaceous oilseed meal (Linum usitatissimum, flax), and a nonoilseed biomass (Sorghum bicolor) were characterized using a 28-day time series of replicated 16S rRNA gene and fungal ITS gene sequence libraries. We hypothesized that biomass type and glucosinolate content would alter community composition but that effects would diminish over time. Distinct separation occurred by amendment type, with mustard inducing large increases in the abundance of bacterial taxa associated with fungal disease suppression (e.g. Bacillus, Pseudomonas, and Streptomyces spp.). Dramatic shifts were seen among the fungi, too, with phylotype richness decreasing by > 60% following mustard addition. Changes in bacterial and fungal community composition were rapid, and distinct community types persisted throughout the study. Oilseed amendment, and mustard in particular, has the potential to alter soil microbial community structure substantially, and such changes are likely to be important in the context of ecosystem health.
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Affiliation(s)
- Emily B Hollister
- Department of Soil and Crop Sciences, Texas A&M University, College Station, TX, USA.
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23
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Colonization of wheat seedling leaves by Fusarium species as observed in growth chambers: a role as inoculum for head blight infection? FUNGAL ECOL 2012. [DOI: 10.1016/j.funeco.2012.02.002] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
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24
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Landschoot S, Waegeman W, Audenaert K, Vandepitte J, Haesaert G, De Baets B. Toward a Reliable Evaluation of Forecasting Systems for Plant Diseases: A Case Study Using Fusarium Head Blight of Wheat. PLANT DISEASE 2012; 96:889-896. [PMID: 30727362 DOI: 10.1094/pdis-08-11-0665] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/09/2023]
Abstract
Despite great efforts to forecast plant diseases, many of the existing systems often fall short in providing farmers with accurate predictions. One of the main problems arises from the existence of year and location effects, so that more advanced procedures are required for evaluating existing systems in an unbiased manner. This paper illustrates the case of Fusarium head blight of winter wheat in Belgium. We present a new cross-validation strategy that enables the evaluation of the predictive performance of a forecasting system for years and locations that are different from the years and locations on which the forecast was developed. Four different cross-validation strategies and five regression techniques are used. The results demonstrated that traditional evaluation strategies are too optimistic in their predictions, whereas the cross-year cross-location validation strategy yielded more realistic outcomes. Using this procedure, the mean squared error increased and the coefficient of determination decreased in predicting disease severity and deoxynivalenol content, suggesting that existing evaluation strategies may generate a substantial optimistic bias. The strongest discrepancies between the cross-validation strategies were observed for multiple linear regression models.
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Affiliation(s)
- S Landschoot
- KERMIT, Department of Mathematical Modelling, Statistics and Bioinformatics, Ghent University, Coupure links 653, BE-9000 Gent, Belgium, and Faculty of Applied Bioscience Engineering, University College Ghent, Valentin Vaerwyckweg 1, BE-9000 Gent, Belgium
| | - W Waegeman
- KERMIT, Department of Mathematical Modelling, Statistics and Bioinformatics, Ghent University
| | - K Audenaert
- Faculty of Applied Bioscience Engineering, University College Ghent, and Department of Crop Protection, Laboratory of Phytopathology, Ghent University
| | - J Vandepitte
- KERMIT, Department of Mathematical Modelling, Statistics and Bioinformatics, Ghent University
| | - G Haesaert
- Faculty of Applied Bioscience Engineering, University College Ghent, and Department of Crop Protection, Laboratory of Phytopathology, Ghent University
| | - B De Baets
- KERMIT, Department of Mathematical Modelling, Statistics and Bioinformatics, Ghent University
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25
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Hogg AC, Johnston RH, Johnston JA, Klouser L, Kephart KD, Dyer AT. Monitoring fusarium crown rot populations in spring wheat residues using quantitative real-time polymerase chain reaction. PHYTOPATHOLOGY 2010; 100:49-57. [PMID: 19968549 DOI: 10.1094/phyto-100-1-0049] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/28/2023]
Abstract
Caused by a complex of Fusarium species including F. culmorum, F. graminearum, and F. pseudograminearum, Fusarium crown rot (FCR) is an important cereal disease worldwide. For this study, Fusarium population dynamics were examined in spring wheat residues sampled from dryland field locations near Bozeman and Huntley, MT, using a quantitative real-time polymerase chain reaction (qPCR) Taqman assay that detects F. culmorum, F. graminearum, and F. pseudograminearum. Between August 2005 and June 2007, Fusarium populations and residue decomposition were measured eight times for standing stubble (0 to 20 cm above the soil surface), lower stem (20 to 38 cm), middle stem (38 to 66 cm), and chaff residues. Large Fusarium populations were found in stubble collected in August 2005 from F. pseudograminearum-inoculated plots. These populations declined rapidly over the next 8 months. Remnant Fusarium populations in inoculated stubble were stable relative to residue biomass from April 2006 until June 2007. These two phases of population dynamics were observed at both locations. Relative to inoculated stubble populations, Fusarium populations in other residue fractions and from noninoculated plots were small. In no case were FCR species observed aggressively colonizing noninfested residues based on qPCR data. These results suggest that Fusarium populations are unstable in the first few months after harvest and do not expand into noninfested wheat residues. Fusarium populations remaining after 8 months were stable for at least another 14 months in standing stubble providing significant inoculums for newly sown crops.
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Affiliation(s)
- A C Hogg
- Department of Plant Science and Plant Pathology, Montana State University, Bozeman
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26
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van der Fels-Klerx H, Kandhai M, Booij C. A conceptual model for identification of emerging risks, applied to mycotoxins in wheat-based supply chains. WORLD MYCOTOXIN J 2008. [DOI: 10.3920/wmj2008.x002] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
Abstract
The research described in this paper focuses on identification of the most important indicators for emerging mycotoxins, starting from those produced by Fusarium fungi, in wheat-based feed and food supply chains, as well as the development of a conceptual model to predict the occurrence of these emerging toxins, based on the selected indicators. The selection of the most important indicators was based on a literature review and evaluation of the resulting indicators for their relevance. Each indicator selected was appointed to relevant stage(s) of the supply chain to which it is related and, for each indicator, a suggestion for a potential information source is given. The selected indicators cover various influential sectors, amongst others, weather conditions, agronomical practices, trade and legislation, as well as a variety of information sources, e.g. on-farm records and statistical organisations. The conceptual model developed is aimed at predicting the occurrence of emerging mycotoxins – based on the selected indicators – in a particular unit of wheat. The model takes a supply chain approach and can handle various types of indicators and various levels of detail of information on origin of the unit of wheat. The proposed model could be useful in the development of an identification system for emerging risks related to mycotoxins in wheat-based supply chains. Ultimately, such a system will help industry and policy makers in their decision-making process with regard to prevention and control of upcoming risks.
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Affiliation(s)
- H. van der Fels-Klerx
- Wageningen UR, RIKILT- Institute of Food Safety, Unit of Databases, Risk Assessment & Supply Chain Management, P.O. Box 230, 6700 AE Wageningen, the Netherlands
| | - M. Kandhai
- Wageningen UR, RIKILT- Institute of Food Safety, Unit of Databases, Risk Assessment & Supply Chain Management, P.O. Box 230, 6700 AE Wageningen, the Netherlands
| | - C. Booij
- Wageningen UR, PRI-Plant Research International, P.O. Box 16, 6700 AA Wageningen, the Netherlands
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27
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Waalwijk C, Koch S, Ncube E, Allwood J, Flett B, de Vries I, Kema G. Quantitative detection of Fusarium spp. and its correlation with fumonisin content in maize from South African subsistence farmers. WORLD MYCOTOXIN J 2008. [DOI: 10.3920/wmj2008.x005] [Citation(s) in RCA: 41] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
Abstract
A quantitative detection tool was developed to enable the monitoring of fumonisin-producing fungi in food and feed commodities. To this end, a quantitative PCR (TaqMan) was developed that targets a conserved region in the polyketide synthase gene fum1, which is involved in the biosynthesis of fumonisin. Hence, this method specifically detected isolates from the fumonisin-producing species Fusarium verticillioides, F. proliferatum, F. nygamai and F. globosum whereas isolates of the fumonisin non-producing species F. equiseti, F. graminearum, F. oxysporum, F. semitectum and F. subglutinans that commonly occur on maize were not detected. Moreover, a few fumonisin non-producing F. verticillioides isolates did not generate any fluorescent signals and were therefore not detected. The correlation between quantitative PCR and mycotoxin content was determined using field samples collected at homestead farms in South Africa. Among 40 samples from the Eastern Cape collected in 2005 a good correlation (R2=0.8303) was found between pg fungal DNA and fumonisin content. A similar correlation (R2=0.8658) was found among 126 samples collected from four provinces in South Africa in 2007. These observations indicate that samples containing ≥ 40 pg fungal DNA/mg sample are suspected of also exceeding the 1 mg/kg total fumonisin level and therefore do not comply with the European Commission limit for fumonisins B1+B2 for maize intended for direct human consumption that applies from 1 October 2007. Combined with the very high maize intake, our results indicate that fumonisin levels in maize from South African homesteads regularly exceed the tolerable daily intake for fumonisins.
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Affiliation(s)
- C. Waalwijk
- Plant Research International B.V, P.O. Box 16, 6700 AA Wageningen, the Netherlands
| | - S. Koch
- Agricultural Research Council-Plant Protection Research Institute, Private Bag X134, Pretoria 0001, South Africa
| | - E. Ncube
- Agricultural Research Council-Grain Crops Institute, Private Bag X1251, Potchefstroom 2520, South Africa
| | - J. Allwood
- Department of Agriculture & Land Affairs, Private Bag X0040, Bhisho 5605, South Africa
| | - B. Flett
- Agricultural Research Council-Grain Crops Institute, Private Bag X1251, Potchefstroom 2520, South Africa
| | - I. de Vries
- Plant Research International B.V, P.O. Box 16, 6700 AA Wageningen, the Netherlands
| | - G. Kema
- Plant Research International B.V, P.O. Box 16, 6700 AA Wageningen, the Netherlands
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