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Bernal A, Tuset VM, Olivar MP. Multiple Approaches to the Trophic Role of Mesopelagic Fish around the Iberian Peninsula. Animals (Basel) 2023; 13:ani13050886. [PMID: 36899743 PMCID: PMC10000212 DOI: 10.3390/ani13050886] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/24/2022] [Revised: 01/17/2023] [Accepted: 02/14/2023] [Indexed: 03/05/2023] Open
Abstract
Myctophids, commonly vertical migrators, and partial and non-migrant stomiiforms constitute most of the mesopelagic biomass, and transport organic matter throughout the food web from the surface to the ocean's depths. Both the diet and trophic structure of twenty-nine species of mesopelagic fish collected around the Iberian Peninsula were studied through the analysis of stomach contents, quantifying food items with a high taxonomic resolution. The investigation covered oligotrophic to productive habitats, with sampling stations distributed in five discrete zones of the western Mediterranean Sea and the northeastern Atlantic Ocean. The geographic environmental conditions, migratory behavior, and species-specific body sizes allowed for the identification of some major feeding patterns for these fish communities. The trophic niche of migrant myctophids showed a high overlap, with copepods as the primary prey category. The diet composition of generalist myctophids (e.g., Ceratoscopelus maderensis and Hygophum benoiti) reflected the distinct zooplanktonic communities between zones. Large stomiiforms (Chauliodus spp., Sigmops elongatus) preferred feeding on micronekton, while the smallest stomiiforms (e.g., Argyropelecus spp., Cyclothone spp., Vinciguerria spp.) preyed on copepods and ostracods. Given the relevance of the mesopelagic fish communities for commercially exploited species and, therefore, for maintaining the sustainability of the fisheries' activity in the zones analyzed, the information provided in the present study is essential for a better understanding of the biology and ecology of these species.
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Affiliation(s)
- Ainhoa Bernal
- Department of Renewable Marine Resources, Institut de Ciències del Mar (ICM-CSIC), 08003 Barcelona, Spain
| | - Víctor Manuel Tuset
- Instituto de Oceanografía y Cambio Global (IOCAG), Universidad de Las Palmas de Gran Canaria (ULPGC), Parque Científico Tecnológico Marino de Taliarte, 35214 Las Palmas de Gran Canaria, Spain
| | - María Pilar Olivar
- Department of Renewable Marine Resources, Institut de Ciències del Mar (ICM-CSIC), 08003 Barcelona, Spain
- Correspondence:
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2
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Fogg LG, Cortesi F, Gache C, Lecchini D, Marshall NJ, de Busserolles F. Developing and adult reef fish show rapid light-induced plasticity in their visual system. Mol Ecol 2023; 32:167-181. [PMID: 36261875 PMCID: PMC10099556 DOI: 10.1111/mec.16744] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/09/2022] [Revised: 10/06/2022] [Accepted: 10/17/2022] [Indexed: 12/29/2022]
Abstract
The visual capabilities of fish are optimized for their ecology and light environment over evolutionary time. Similarly, fish vision can adapt to regular changes in light conditions within their lifetime, e.g., ontogenetic or seasonal variation. However, we do not fully understand how vision responds to irregular short-term changes in the light environment, e.g., algal blooms and light pollution. In this study, we investigated the effect of short-term exposure to unnatural light conditions on opsin gene expression and retinal cell densities in juvenile and adult diurnal reef fish (convict surgeonfish; Acanthurus triostegus). Results revealed phenotypic plasticity in the retina across ontogeny, particularly during development. The most substantial differences at both molecular and cellular levels were found under constant dim light, while constant bright light and simulated artificial light at night had a lesser effect. Under dim light, juveniles and adults increased absolute expression of the cone opsin genes, sws2a, rh2c and lws, within a few days and juveniles also decreased densities of cones, inner nuclear layer cells and ganglion cells. These changes potentially enhanced vision under the altered light conditions. Thus, our study suggests that plasticity mainly comes into play when conditions are extremely different to the species' natural light environment, i.e., a diurnal fish in "constant night". Finally, in a rescue experiment on adults, shifts in opsin expression were reverted within 24 h. Overall, our study showed rapid, reversible light-induced changes in the retina of A. triostegus, demonstrating phenotypic plasticity in the visual system of a reef fish throughout life.
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Affiliation(s)
- Lily G Fogg
- Queensland Brain Institute, The University of Queensland, Brisbane, Queensland, Australia
| | - Fabio Cortesi
- Queensland Brain Institute, The University of Queensland, Brisbane, Queensland, Australia
| | - Camille Gache
- PSL Research University, EPHE-UPVD-CNRS, UAR3278 CRIOBE, Papetoai, French Polynesia.,Laboratoire d'Excellence "CORAIL", Paris, France
| | - David Lecchini
- PSL Research University, EPHE-UPVD-CNRS, UAR3278 CRIOBE, Papetoai, French Polynesia.,Laboratoire d'Excellence "CORAIL", Paris, France
| | - N Justin Marshall
- Queensland Brain Institute, The University of Queensland, Brisbane, Queensland, Australia
| | - Fanny de Busserolles
- Queensland Brain Institute, The University of Queensland, Brisbane, Queensland, Australia
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3
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Characterization of the First Cultured Representative of " Candidatus Thermofonsia" Clade 2 within Chloroflexi Reveals Its Phototrophic Lifestyle. mBio 2022; 13:e0028722. [PMID: 35229635 PMCID: PMC8941918 DOI: 10.1128/mbio.00287-22] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022] Open
Abstract
“Candidatus Thermofonsia” represents a novel class within the phylum Chloroflexi. Metagenomic analysis reveals “Ca. Thermofonsia” harbors phototrophs outside the classically phototrophic Chloroflexia class. Unfortunately, the paucity of pure cultures limits further insights into their potential phototrophy. Here, we report the successful isolation of a “Ca. Thermofonsia” representative (Phototrophicus methaneseepsis ZRK33) from a deep-sea cold seep. Using combined physiological, genomic, and transcriptomic methods, we further show the long-wavelength light (e.g., red and infrared light) could promote the growth of strain ZRK33 and upregulate the expression of genes associated with phototrophy. In particular, strain ZRK33 has a typical phototrophic lifestyle under both laboratory and deep-sea conditions. Strain ZRK33 also possesses the ability to fix inorganic carbon through the 3-hydroxypropionate bicycle in both laboratory and deep-sea in situ environments, and the combined autotrophic, phototrophic, and heterotrophic capabilities endow strain ZRK33 with a photomixotrophic lifestyle. Notably, the predicted genes associated with phototrophy broadly exist in the metagenomes of 27 deep-sea Chloroflexi members, strongly suggesting diverse phototrophic Chloroflexi members are distributed in various unexplored deep biospheres.
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Abstract
Light is a ubiquitous energy source and environmental signal that broadly impacts the lifestyle of a large number of photosynthetic/nonphotosynthetic microorganisms living in the euphotic layer. However, the responses of deep-sea microbes to light are largely unknown, even though blue light is proposed to be distributed in the deep ocean. Here, we successfully cultured a novel bacterial species, named Spongiibacter nanhainus CSC3.9, from deep-sea cold seep samples by a blue light induction approach. The growth of strain CSC3.9 was obviously promoted by the illumination of blue light. We next determined BLUF (a typical blue light photoreceptor) was the most essential factor directing light sensing of strain CSC3.9 through a combined proteomic and genetic method. The function of light sensing mediated by BLUF was further confirmed by the in vitro-synthesized protein. Notably, homologs of BLUF widely existed across the marine microorganisms (containing Spongiibacter species) derived from different environments, including cold seeps. This strongly indicates that the distribution of light utilization by the nonphototrophic bacteria living in the ocean is broad and has been substantially underestimated. IMPORTANCE Extensive studies have been conducted to explore the mechanisms of light sensing and utilization by microorganisms that live in the photic zone. Strikingly, accumulated evidence shows that light is distributed in the deep biosphere. However, the existence and process of light sensing and utilization by microbes inhabiting the deep ocean have been seldom reported. In the present study, a novel bacterial strain, Spongiibacter nanhainus CSC3.9, was enriched and purified from a deep-sea cold seep sample through a blue light induction method. Combined with genomic, proteomic, genetic, and biochemical approaches, the mechanism of this novel strain sensing blue light through a BLUF-dependent pathway was detailed. Our study provides a good model to study the mechanisms of light sensing mediated by deep-sea nonphototrophic bacteria.
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5
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Pelagic organisms avoid white, blue, and red artificial light from scientific instruments. Sci Rep 2021; 11:14941. [PMID: 34294780 PMCID: PMC8298562 DOI: 10.1038/s41598-021-94355-6] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/24/2021] [Accepted: 07/05/2021] [Indexed: 11/08/2022] Open
Abstract
In situ observations of pelagic fish and zooplankton with optical instruments usually rely on external light sources. However, artificial light may attract or repulse marine organisms, which results in biased measurements. It is often assumed that most pelagic organisms do not perceive the red part of the visible spectrum and that red light can be used for underwater optical measurements of biological processes. Using hull-mounted echosounders above an acoustic probe or a baited video camera, each equipped with light sources of different colours (white, blue and red), we demonstrate that pelagic organisms in Arctic and temperate regions strongly avoid artificial light, including visible red light (575–700 nm), from instruments lowered in the water column. The density of organisms decreased by up to 99% when exposed to artificial light and the distance of avoidance varied from 23 to 94 m from the light source, depending on colours, irradiance levels and, possibly, species communities. We conclude that observations from optical and acoustic instruments, including baited cameras, using light sources with broad spectral composition in the 400–700 nm wavelengths do not capture the real state of the ecosystem and that they cannot be used alone for reliable abundance estimates or behavioural studies.
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Yoerger DR, Govindarajan AF, Howland JC, Llopiz JK, Wiebe PH, Curran M, Fujii J, Gomez-Ibanez D, Katija K, Robison BH, Hobson BW, Risi M, Rock SM. A hybrid underwater robot for multidisciplinary investigation of the ocean twilight zone. Sci Robot 2021; 6:6/55/eabe1901. [PMID: 34135116 DOI: 10.1126/scirobotics.abe1901] [Citation(s) in RCA: 12] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/05/2020] [Accepted: 05/24/2021] [Indexed: 12/31/2022]
Abstract
Mesobot, an autonomous underwater vehicle, addresses specific unmet needs for observing and sampling a variety of phenomena in the ocean's midwaters. The midwater hosts a vast biomass, has a role in regulating climate, and may soon be exploited commercially, yet our scientific understanding of it is incomplete. Mesobot has the ability to survey and track slow-moving animals and to correlate the animals' movements with critical environmental measurements. Mesobot will complement existing oceanographic assets such as towed, remotely operated, and autonomous vehicles; shipboard acoustic sensors; and net tows. Its potential to perform behavioral studies unobtrusively over long periods with substantial autonomy provides a capability that is not presently available to midwater researchers. The 250-kilogram marine robot can be teleoperated through a lightweight fiber optic tether and can also operate untethered with full autonomy while minimizing environmental disturbance. We present recent results illustrating the vehicle's ability to automatically track free-swimming hydromedusae (Solmissus sp.) and larvaceans (Bathochordaeus stygius) at depths of 200 meters in Monterey Bay, USA. In addition to these tracking missions, the vehicle can execute preprogrammed missions collecting image and sensor data while also carrying substantial auxiliary payloads such as cameras, sonars, and samplers.
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Affiliation(s)
- Dana R Yoerger
- Woods Hole Oceanographic Institution, Woods Hole, MA 02543, USA.
| | | | | | - Joel K Llopiz
- Woods Hole Oceanographic Institution, Woods Hole, MA 02543, USA
| | - Peter H Wiebe
- Woods Hole Oceanographic Institution, Woods Hole, MA 02543, USA
| | - Molly Curran
- Woods Hole Oceanographic Institution, Woods Hole, MA 02543, USA
| | - Justin Fujii
- Woods Hole Oceanographic Institution, Woods Hole, MA 02543, USA
| | | | - Kakani Katija
- Monterey Bay Aquarium Research Institute, Moss Landing, CA 95039, USA
| | - Bruce H Robison
- Monterey Bay Aquarium Research Institute, Moss Landing, CA 95039, USA
| | - Brett W Hobson
- Monterey Bay Aquarium Research Institute, Moss Landing, CA 95039, USA
| | - Michael Risi
- Monterey Bay Aquarium Research Institute, Moss Landing, CA 95039, USA
| | - Stephen M Rock
- Department of Aeronautics and Astronautics, Stanford University, Stanford, CA 94305, USA
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7
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de Busserolles F, Cortesi F, Fogg L, Stieb SM, Luehrmann M, Marshall NJ. The visual ecology of Holocentridae, a nocturnal coral reef fish family with a deep-sea-like multibank retina. J Exp Biol 2021; 224:jeb233098. [PMID: 33234682 DOI: 10.1242/jeb.233098] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/23/2020] [Accepted: 11/16/2020] [Indexed: 12/21/2022]
Abstract
The visual systems of teleost fishes usually match their habitats and lifestyles. Since coral reefs are bright and colourful environments, the visual systems of their diurnal inhabitants have been more extensively studied than those of nocturnal species. In order to fill this knowledge gap, we conducted a detailed investigation of the visual system of the nocturnal reef fish family Holocentridae. Results showed that the visual system of holocentrids is well adapted to their nocturnal lifestyle with a rod-dominated retina. Surprisingly, rods in all species were arranged into 6-17 well-defined banks, a feature most commonly found in deep-sea fishes, that may increase the light sensitivity of the eye and/or allow colour discrimination in dim light. Holocentrids also have the potential for dichromatic colour vision during the day with the presence of at least two spectrally different cone types: single cones expressing the blue-sensitive SWS2A gene, and double cones expressing one or two green-sensitive RH2 genes. Some differences were observed between the two subfamilies, with Holocentrinae (squirrelfish) having a slightly more developed photopic visual system than Myripristinae (soldierfish). Moreover, retinal topography of both ganglion cells and cone photoreceptors showed specific patterns for each cell type, likely highlighting different visual demands at different times of the day, such as feeding. Overall, their well-developed scotopic visual systems and the ease of catching and maintaining holocentrids in aquaria, make them ideal models to investigate teleost dim-light vision and more particularly shed light on the function of the multibank retina and its potential for dim-light colour vision.
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Affiliation(s)
- Fanny de Busserolles
- Queensland Brain Institute, The University of Queensland, Brisbane, QLD 4072, Australia
| | - Fabio Cortesi
- Queensland Brain Institute, The University of Queensland, Brisbane, QLD 4072, Australia
| | - Lily Fogg
- Queensland Brain Institute, The University of Queensland, Brisbane, QLD 4072, Australia
| | - Sara M Stieb
- Queensland Brain Institute, The University of Queensland, Brisbane, QLD 4072, Australia
- Center for Ecology, Evolution and Biogeochemistry, Eawag Federal Institute of Aquatic Science and Technology, Seestrasse 79, 6074 Kastanienbaum, Switzerland; and Institute for Ecology and Evolution, University of Bern, Baltzerstrasse 6, 3012 Bern, Switzerland
| | - Martin Luehrmann
- Queensland Brain Institute, The University of Queensland, Brisbane, QLD 4072, Australia
| | - N Justin Marshall
- Queensland Brain Institute, The University of Queensland, Brisbane, QLD 4072, Australia
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8
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de Busserolles F, Fogg L, Cortesi F, Marshall J. The exceptional diversity of visual adaptations in deep-sea teleost fishes. Semin Cell Dev Biol 2020; 106:20-30. [PMID: 32536437 DOI: 10.1016/j.semcdb.2020.05.027] [Citation(s) in RCA: 26] [Impact Index Per Article: 6.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/09/2020] [Revised: 05/28/2020] [Accepted: 05/28/2020] [Indexed: 10/24/2022]
Abstract
The deep-sea is the largest and one of the dimmest habitats on earth. In this extreme environment, every photon counts and may make the difference between life and death for its inhabitants. Two sources of light are present in the deep-sea; downwelling light, that becomes dimmer and spectrally narrower with increasing depth until completely disappearing at around 1000 m, and bioluminescence, the light emitted by animals themselves. Despite these relatively dark and inhospitable conditions, many teleost fish have made the deep-sea their home, relying heavily on vision to survive. Their visual systems have had to adapt, sometimes in astonishing and bizarre ways. This review examines some aspects of the visual system of deep-sea teleosts and highlights the exceptional diversity in both optical and retinal specialisations. We also reveal how widespread several of these adaptations are across the deep-sea teleost phylogeny. Finally, the significance of some recent findings as well as the surprising diversity in visual adaptations is discussed.
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Affiliation(s)
- Fanny de Busserolles
- Queensland Brain Institute, The University of Queensland, St Lucia, Queensland 4072, Australia.
| | - Lily Fogg
- Queensland Brain Institute, The University of Queensland, St Lucia, Queensland 4072, Australia
| | - Fabio Cortesi
- Queensland Brain Institute, The University of Queensland, St Lucia, Queensland 4072, Australia
| | - Justin Marshall
- Queensland Brain Institute, The University of Queensland, St Lucia, Queensland 4072, Australia
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9
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López-Pérez C, Olivar MP, Hulley PA, Tuset VM. Length-weight relationships of mesopelagic fishes from the equatorial and tropical Atlantic waters: influence of environment and body shape. JOURNAL OF FISH BIOLOGY 2020; 96:1388-1398. [PMID: 32133642 DOI: 10.1111/jfb.14307] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/16/2019] [Revised: 02/27/2020] [Accepted: 02/28/2020] [Indexed: 06/10/2023]
Abstract
Length-weight relationships (LWRs) were estimated for 36 mesopelagic fish species collected from the equatorial and tropical Atlantic encompassing several oceanographic regions: oligotrophic, equatorial, Cape Blanc, Cape Verde and the Canary Islands. The sample was composed of myctophids (25 species), gonostomatids (5), sternoptychids (3), stomiids (2) and phosichthyids (1). The species were clustered according to body shape: "short-deep" (sternoptychids), "elongate" (gonostomatids, stomiids and some phosichthyids) and "fusiform" (myctophids and some phosichthyids). Three types of weight and LWRs were considered: wet weight (WW), eviscerated wet weight (eWW) and eviscerated dry weight (eDW). The study demonstrated that most species present a positive allometric growth, independent of the weight used. However, the allometric value varied in 40-50% of species depending on the type of weight considered. Significant variations linked to fish morphology were found in the relationship between the slope and intercept of the LWR equation. Significant differences were also noted in the water content linked to fish body shape. Based on the distributions of several species we compare their fitness between oceanographic regions using the relative condition factor (Krel ). Except for Diaphus brachycephalus (oligotrophic vs. equatorial waters) and Lampanyctus alatus (equatorial, Cape Blanc, Cape Verde and the Canary Islands), no regional significant differences were observed in the species analysed.
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Affiliation(s)
- Cristina López-Pérez
- Department of Renewable Marine Resources, Institute of Marine Sciences (CSIC), Barcelona, Spain
| | - M Pilar Olivar
- Department of Renewable Marine Resources, Institute of Marine Sciences (CSIC), Barcelona, Spain
| | - Percy A Hulley
- Marine Biology Department, Iziko - South African Museum, Cape Town, South Africa
- MA-RE Institute, University of Cape Town, Cape Town, South Africa
| | - Víctor M Tuset
- Department of Renewable Marine Resources, Institute of Marine Sciences (CSIC), Barcelona, Spain
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10
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Carleton KL, Escobar-Camacho D, Stieb SM, Cortesi F, Marshall NJ. Seeing the rainbow: mechanisms underlying spectral sensitivity in teleost fishes. J Exp Biol 2020; 223:jeb193334. [PMID: 32327561 PMCID: PMC7188444 DOI: 10.1242/jeb.193334] [Citation(s) in RCA: 48] [Impact Index Per Article: 12.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/16/2022]
Abstract
Among vertebrates, teleost eye diversity exceeds that found in all other groups. Their spectral sensitivities range from ultraviolet to red, and the number of visual pigments varies from 1 to over 40. This variation is correlated with the different ecologies and life histories of fish species, including their variable aquatic habitats: murky lakes, clear oceans, deep seas and turbulent rivers. These ecotopes often change with the season, but fish may also migrate between ecotopes diurnally, seasonally or ontogenetically. To survive in these variable light habitats, fish visual systems have evolved a suite of mechanisms that modulate spectral sensitivities on a range of timescales. These mechanisms include: (1) optical media that filter light, (2) variations in photoreceptor type and size to vary absorbance and sensitivity, and (3) changes in photoreceptor visual pigments to optimize peak sensitivity. The visual pigment changes can result from changes in chromophore or changes to the opsin. Opsin variation results from changes in opsin sequence, opsin expression or co-expression, and opsin gene duplications and losses. Here, we review visual diversity in a number of teleost groups where the structural and molecular mechanisms underlying their spectral sensitivities have been relatively well determined. Although we document considerable variability, this alone does not imply functional difference per se. We therefore highlight the need for more studies that examine species with known sensitivity differences, emphasizing behavioral experiments to test whether such differences actually matter in the execution of visual tasks that are relevant to the fish.
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Affiliation(s)
- Karen L Carleton
- Department of Biology, University of Maryland, College Park, MD 20742, USA
| | | | - Sara M Stieb
- Centre of Ecology, Evolution and Biogeochemistry, EAWAG Swiss Federal Institute of Aquatic Science and Technology, 6047 Kastanienbaum, Switzerland
- Institute of Ecology and Evolution, University of Bern, 3012 Bern, Switzerland
- Queensland Brain Institute, University of Queensland, Brisbane 4072 QLD, Australia
| | - Fabio Cortesi
- Queensland Brain Institute, University of Queensland, Brisbane 4072 QLD, Australia
| | - N Justin Marshall
- Queensland Brain Institute, University of Queensland, Brisbane 4072 QLD, Australia
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11
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Luehrmann M, Cortesi F, Cheney KL, Busserolles F, Marshall NJ. Microhabitat partitioning correlates with opsin gene expression in coral reef cardinalfishes (Apogonidae). Funct Ecol 2020. [DOI: 10.1111/1365-2435.13529] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Martin Luehrmann
- Sensory Neurobiology Group Queensland Brain Institute The University of Queensland Brisbane Qld Australia
| | - Fabio Cortesi
- Sensory Neurobiology Group Queensland Brain Institute The University of Queensland Brisbane Qld Australia
| | - Karen L. Cheney
- Sensory Neurobiology Group Queensland Brain Institute The University of Queensland Brisbane Qld Australia
- School of Biological Sciences The University of Queensland Brisbane Qld Australia
| | - Fanny Busserolles
- Sensory Neurobiology Group Queensland Brain Institute The University of Queensland Brisbane Qld Australia
| | - N. Justin Marshall
- Sensory Neurobiology Group Queensland Brain Institute The University of Queensland Brisbane Qld Australia
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12
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Peña M, Cabrera-Gámez J, Domínguez-Brito AC. Multi-frequency and light-avoiding characteristics of deep acoustic layers in the North Atlantic. MARINE ENVIRONMENTAL RESEARCH 2020; 154:104842. [PMID: 32056700 DOI: 10.1016/j.marenvres.2019.104842] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/18/2019] [Revised: 11/04/2019] [Accepted: 11/20/2019] [Indexed: 06/10/2023]
Abstract
This study aimed to add light-avoidance as a categorizing technique for the study of mesopelagic acoustic layers. Data recorded along the 20° W parallel from 20° N to Iceland showed three types of mesopelagic layers: the non-avoiding non-migrant deep scattering layer (NMDSL), which dropped its intensity toward the north, the avoiding migrating fish layers (MDSL), which were more intense at upwelling areas and toward the north, and a secondary deeper NMDSL at the southern part. Light avoidance was only discernible at 18 kHz within the main NMDSL when this layer was intense, suggesting that migrants are barely seen at 38 kHz when other resonant scatterers occupy these depths. These results highlight the importance of employing the 18 kHz frequency from a vessel borne echosounder or lowered echosounders attached to a probe to study gas-bearing migrants.
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Affiliation(s)
- Marian Peña
- Instituto Español de Oceanografía (IEO), Centre Oceanogràfic de Balears, Muelle de Poniente s/n, Palma, Spain.
| | - Jorge Cabrera-Gámez
- Instituto de Sistemas Inteligentes y, Aplicaciones Numéricas en Ingeniería, Universidad de Las Palmas de Gran Canaria, Las Palmas de Gran Canaria, Spain
| | - Antonio C Domínguez-Brito
- Instituto de Sistemas Inteligentes y, Aplicaciones Numéricas en Ingeniería, Universidad de Las Palmas de Gran Canaria, Las Palmas de Gran Canaria, Spain
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13
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A detailed investigation of the visual system and visual ecology of the Barrier Reef anemonefish, Amphiprion akindynos. Sci Rep 2019; 9:16459. [PMID: 31712572 PMCID: PMC6848076 DOI: 10.1038/s41598-019-52297-0] [Citation(s) in RCA: 21] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/17/2019] [Accepted: 10/13/2019] [Indexed: 11/24/2022] Open
Abstract
Vision plays a major role in the life of most teleosts, and is assumingly well adapted to each species ecology and behaviour. Using a multidisciplinary approach, we scrutinised several aspects of the visual system and ecology of the Great Barrier Reef anemonefish, Amphiprion akindynos, including its orange with white patterning, retinal anatomy and molecular biology, its symbiosis with anemones and sequential hermaphroditism. Amphiprion akindynos possesses spectrally distinct visual pigments and opsins: one rod opsin, RH1 (498 nm), and five cone opsins, SWS1 (370 nm), SWS2B (408 nm), RH2B (498 nm), RH2A (520 nm), and LWS (554 nm). Cones were arranged in a regular mosaic with each single cone surrounded by four double cones. Double cones mainly expressed RH2B (53%) in one member and RH2A (46%) in the other, matching the prevailing light. Single cones expressed SWS1 (89%), which may serve to detect zooplankton, conspecifics and the host anemone. Moreover, a segregated small fraction of single cones coexpressed SWS1 with SWS2B (11%). This novel visual specialisation falls within the region of highest acuity and is suggested to increase the chromatic contrast of Amphiprion akindynos colour patterns, which might improve detection of conspecifics.
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14
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Zavala-Muñoz F, Vera-Duarte J, Bustos CA, Angulo-Aros J, Landaeta MF. Niche partitioning and morphospace in early stages of two sympatric Diogenichthys species (Myctophidae). JOURNAL OF FISH BIOLOGY 2019; 95:1275-1285. [PMID: 31454414 DOI: 10.1111/jfb.14128] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/26/2019] [Accepted: 08/26/2019] [Indexed: 06/10/2023]
Abstract
Diet and morphospace of larval stages of two sympatric lanternfish Diogenichthys atlanticus and D. laternatus from the south-east Pacific Ocean were compared and the covariance between both variables was assessed for each species. Diogenichthys atlanticus stomach contents consisted mainly of copepod nauplii and digested remains and this species had a broader niche than D. laternatus, in which stomach contents were highly digested. No dietary overlap was found between both species. The covariance between skull shape and diet for D. atlanticus was given by a wider mouth gape related to the presence of copepod nauplii, whilst for D. laternatus, a shorter snout and posteriorly displaced eye were related to the presence of highly digested stomach contents. Interspecific differences between diets and skull shapes suggest that both species may have undergone morphological or niche divergence to avoid competition, such as feeding at different hours or depth stratification.
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Affiliation(s)
- Francisca Zavala-Muñoz
- Laboratorio de Ictioplancton (LABITI), Escuela de Biología Marina, Facultad de Ciencias del Mar y de Recursos Naturales, Universidad de Valparaíso, Viña del Mar, Chile
| | - Javier Vera-Duarte
- Laboratorio de Ictioplancton (LABITI), Escuela de Biología Marina, Facultad de Ciencias del Mar y de Recursos Naturales, Universidad de Valparaíso, Viña del Mar, Chile
| | - Claudia A Bustos
- Laboratorio de Ictioplancton (LABITI), Escuela de Biología Marina, Facultad de Ciencias del Mar y de Recursos Naturales, Universidad de Valparaíso, Viña del Mar, Chile
- Centro de Observación Marino para Estudios de Riesgos del Ambiente Costero (COSTA-R), Universidad de Valparaíso, Viña del Mar, Chile
| | - Jorge Angulo-Aros
- Departamento de Oceanografía y Medio Ambiente, Instituto de Fomento Pesquero, Valparaíso, Chile
| | - Mauricio F Landaeta
- Laboratorio de Ictioplancton (LABITI), Escuela de Biología Marina, Facultad de Ciencias del Mar y de Recursos Naturales, Universidad de Valparaíso, Viña del Mar, Chile
- Centro de Observación Marino para Estudios de Riesgos del Ambiente Costero (COSTA-R), Universidad de Valparaíso, Viña del Mar, Chile
- Fundación Ictiológica, Santiago, Chile
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15
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Chen JN, Samadi S, Chen WJ. Rhodopsin gene evolution in early teleost fishes. PLoS One 2018; 13:e0206918. [PMID: 30395593 PMCID: PMC6218077 DOI: 10.1371/journal.pone.0206918] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/20/2018] [Accepted: 10/22/2018] [Indexed: 01/03/2023] Open
Abstract
Rhodopsin mediates an essential step in image capture and is tightly associated with visual adaptations of aquatic organisms, especially species that live in dim light environments (e.g., the deep sea). The rh1 gene encoding rhodopsin was formerly considered a single-copy gene in genomes of vertebrates, but increasing exceptional cases have been found in teleost fish species. The main objective of this study was to determine to what extent the visual adaptation of teleosts might have been shaped by the duplication and loss of rh1 genes. For that purpose, homologous rh1/rh1-like sequences in genomes of ray-finned fishes from a wide taxonomic range were explored using a PCR-based method, data mining of public genetic/genomic databases, and subsequent phylogenomic analyses of the retrieved sequences. We show that a second copy of the fish-specific intron-less rh1 is present in the genomes of most anguillids (Elopomorpha), Hiodon alosoides (Osteoglossomorpha), and several clupeocephalan lineages. The phylogenetic analysis and comparisons of alternative scenarios for putative events of gene duplication and loss suggested that fish rh1 was likely duplicated twice during the early evolutionary history of teleosts, with one event coinciding with the hypothesized fish-specific genome duplication and the other in the common ancestor of the Clupeocephala. After these gene duplication events, duplicated genes were maintained in several teleost lineages, whereas some were secondarily lost in specific lineages. Alternative evolutionary schemes of rh1 and comparison with previous studies of gene evolution are also reviewed.
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Affiliation(s)
- Jhen-Nien Chen
- Institute of Oceanography, National Taiwan University, Taipei, Taiwan
| | - Sarah Samadi
- Institute de Systématique, Évolution, Biodiversité (ISYEB), Muséum National d’Histoire Naturelle–CNRS, Sorbonne Université, EPHE, Paris, France
| | - Wei-Jen Chen
- Institute of Oceanography, National Taiwan University, Taipei, Taiwan
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16
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Rosencrans RF, Leslie CE, Perkins KA, Walkowski W, Gordon WC, Richards-Zawacki CL, Bazan NG, Farris HE. Quantifying the relationship between optical anatomy and retinal physiological sensitivity: A comparative approach. J Comp Neurol 2018; 526:3045-3057. [PMID: 30198557 PMCID: PMC10075234 DOI: 10.1002/cne.24531] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/15/2018] [Revised: 07/27/2018] [Accepted: 08/27/2018] [Indexed: 02/03/2023]
Abstract
Light intensity varies 1 million-fold between night and day, driving the evolution of eye morphology and retinal physiology. Despite extensive research across taxa showing anatomical adaptations to light niches, surprisingly few empirical studies have quantified the relationship between such traits and the physiological sensitivity to light. In this study, we employ a comparative approach in frogs to determine the physiological sensitivity of eyes in two nocturnal (Rana pipiens, Hyla cinerea) and two diurnal species (Oophaga pumilio, Mantella viridis), examining whether differences in retinal thresholds can be explained by ocular and cellular anatomy. Scotopic electroretinogram (ERG) analysis of relative b-wave amplitude reveals 10- to 100-fold greater light sensitivity in nocturnal compared to diurnal frogs. Ocular and cellular optics (aperture, focal length, and rod outer segment dimensions) were assessed via the Land equation to quantify differences in optical sensitivity. Variance in retinal thresholds was overwhelmingly explained by Land equation solutions, which describe the optical sensitivity of single rods. Thus, at the b-wave, stimulus-response thresholds may be unaffected by photoreceptor convergence (which create larger, combined collecting areas). Follow-up experiments were conducted using photopic ERGs, which reflect cone vision. Under these conditions, the relative difference in thresholds was reversed, such that diurnal species were more sensitive than nocturnal species. Thus, photopic data suggest that rod-specific adaptations, not ocular anatomy (e.g., aperture and focal distance), drive scotopic thresholds differences. To the best of our knowledge, these data provide the first quantified relationship between optical and physiological sensitivity in vertebrates active in different light regimes.
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Affiliation(s)
- Robert F Rosencrans
- Neuroscience Center, Louisiana State University School of Medicine, New Orleans, Louisiana
| | - Caitlin E Leslie
- Department of Integrative Biology, University of Texas, Austin, Texas
| | - Keith A Perkins
- Neuroscience Center, Louisiana State University School of Medicine, New Orleans, Louisiana
| | - Whitney Walkowski
- Neuroscience Center, Louisiana State University School of Medicine, New Orleans, Louisiana
| | - William C Gordon
- Neuroscience Center, Louisiana State University School of Medicine, New Orleans, Louisiana.,Department of Ophthalmology, Louisiana State University School of Medicine, New Orleans, Louisiana
| | | | - Nicolas G Bazan
- Neuroscience Center, Louisiana State University School of Medicine, New Orleans, Louisiana.,Department of Ophthalmology, Louisiana State University School of Medicine, New Orleans, Louisiana
| | - Hamilton E Farris
- Neuroscience Center, Louisiana State University School of Medicine, New Orleans, Louisiana.,Department of Otorhinolaryngology, Louisiana State University School of Medicine, New Orleans, Louisiana.,Department of Cell Biology and Anatomy, Louisiana State University School of Medicine, New Orleans, Louisiana
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17
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Mark MD, Donner M, Eickelbeck D, Stepien J, Nowrousian M, Kück U, Paris F, Hellinger J, Herlitze S. Visual tuning in the flashlight fish Anomalops katoptron to detect blue, bioluminescent light. PLoS One 2018; 13:e0198765. [PMID: 29995896 PMCID: PMC6040694 DOI: 10.1371/journal.pone.0198765] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/12/2018] [Accepted: 05/24/2018] [Indexed: 01/23/2023] Open
Abstract
Bioluminescence is a fascinating phenomenon and can be found in many different organisms including fish. It has been suggested that bioluminescence is used for example for defense, prey attraction, and for intraspecific communication to attract for example sexual partners. The flashlight fish, Anomalops katoptron (A. katoptron), is a nocturnal fish that produces bioluminescence and lives in shallow waters, which makes it ideal for laboratory studies. In order to understand A. katoptron's ability to detect bioluminescent light (480 to 490 nm) at night, we characterized the visual system adaptation of A. katoptron using phylogenetic, electrophysiological and behavioral studies. We found that the retinae of A. katoptron contain rods and sparse cones. A. katoptron retinae express two main visual pigments, rhodopsin (RH1), and to a lesser extent, rhodopsin-like opsin (RH2). Interestingly, recombinant RH1 and RH2 are maximally sensitive to a wavelength of approximately 490 nm light (λmax), which correspond to the spectral peak of in vivo electroretinogram (ERG) measurements. In addition, behavioral assays revealed that A. katoptron is attracted by low intensity blue but not red light. Collectively, our results suggest that the A. katoptron visual system is optimized to detect blue light in the frequency range of its own bioluminescence and residual starlight.
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Affiliation(s)
- Melanie D. Mark
- Department of General Zoology and Neurobiology, Ruhr-University Bochum, Bochum, Germany
- * E-mail:
| | - Marcel Donner
- Department of General Zoology and Neurobiology, Ruhr-University Bochum, Bochum, Germany
| | - Dennis Eickelbeck
- Department of General Zoology and Neurobiology, Ruhr-University Bochum, Bochum, Germany
| | - Jennifer Stepien
- Department of General Zoology and Neurobiology, Ruhr-University Bochum, Bochum, Germany
| | - Minou Nowrousian
- Department of General and Molecular Botany, Ruhr-University Bochum, Bochum, Germany
| | - Ulrich Kück
- Department of General and Molecular Botany, Ruhr-University Bochum, Bochum, Germany
| | - Frank Paris
- Department of Animal Physiology, Ruhr-University Bochum, Bochum, Germany
| | - Jens Hellinger
- Department of General Zoology and Neurobiology, Ruhr-University Bochum, Bochum, Germany
| | - Stefan Herlitze
- Department of General Zoology and Neurobiology, Ruhr-University Bochum, Bochum, Germany
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18
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Karagic N, Härer A, Meyer A, Torres‐Dowdall J. Heterochronic opsin expression due to early light deprivation results in drastically shifted visual sensitivity in a cichlid fish: Possible role of thyroid hormone signaling. JOURNAL OF EXPERIMENTAL ZOOLOGY PART B-MOLECULAR AND DEVELOPMENTAL EVOLUTION 2018; 330:202-214. [DOI: 10.1002/jez.b.22806] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/06/2017] [Revised: 04/30/2018] [Accepted: 05/03/2018] [Indexed: 11/07/2022]
Affiliation(s)
- Nidal Karagic
- Zoology and Evolutionary BiologyDepartment of BiologyUniversity of Konstanz Konstanz Germany
| | - Andreas Härer
- Zoology and Evolutionary BiologyDepartment of BiologyUniversity of Konstanz Konstanz Germany
| | - Axel Meyer
- Zoology and Evolutionary BiologyDepartment of BiologyUniversity of Konstanz Konstanz Germany
- Radcliffe Institute for Advanced StudyHarvard University Cambridge Massachusetts
| | - Julián Torres‐Dowdall
- Zoology and Evolutionary BiologyDepartment of BiologyUniversity of Konstanz Konstanz Germany
- ZukunftskollegUniversity of Konstanz Konstanz Germany
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19
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O'Carroll DC, Warrant EJ. Vision in dim light: highlights and challenges. Philos Trans R Soc Lond B Biol Sci 2018; 372:rstb.2016.0062. [PMID: 28193807 DOI: 10.1098/rstb.2016.0062] [Citation(s) in RCA: 24] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 12/22/2016] [Indexed: 11/12/2022] Open
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20
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Luehrmann M, Stieb SM, Carleton KL, Pietzker A, Cheney KL, Marshall NJ. Short term colour vision plasticity on the reef: Changes in opsin expression under varying light conditions differ between ecologically distinct reef fish species. J Exp Biol 2018; 221:jeb.175281. [DOI: 10.1242/jeb.175281] [Citation(s) in RCA: 21] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/01/2017] [Accepted: 08/21/2018] [Indexed: 12/17/2022]
Abstract
Vision mediates important behavioural tasks such as mate choice, escape from predators and foraging. In fish, photoreceptors are generally tuned to specific visual tasks and/or to their light environment according to depth or water colour to ensure optimal performance. Evolutionary mechanisms acting on opsin genes, the protein component of the photopigment, can influence the spectral sensitivity of photoreceptors. Opsin genes are known to respond to environmental conditions on a number of time scales including shorter time frames due to seasonal variation, or through longer term evolutionary tuning. There is also evidence for ‘on-the-fly’ adaptations in adult fish in response to rapidly changing environmental conditions, however, results are contradictory. Here we investigated the ability of three reef fish species that belong to two ecologically distinct families, Yellow-striped cardinalfish, Ostorhinchus cyanosoma, Ambon damselfish, Pomacentrus amboinensis, and Lemon damselfish, Pomacentrus moluccensis, to alter opsin-gene expression as an adaptation to short-term (weeks to months) changes of environmental light conditions, and attempted to characterize the underlying expression regulation principles. We report the ability for all species to alter opsin gene expression within months and even a few weeks, suggesting that opsin expression in adult reef fish is not static. Furthermore, we found that opsin expression changes in single cones generally occurred more rapidly than in double cones, and identified different responses of RH2 opsin gene expression between the ecologically distinct reef fish families. Quantum catch correlation analysis suggested different regulation mechanisms for opsin expression dependent on gene class.
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Affiliation(s)
- Martin Luehrmann
- Queensland Brain Institute, The University of Queensland, Sensory Neurobiology Group, 4072, Brisbane, QLD, Australia
| | - Sara M. Stieb
- Queensland Brain Institute, The University of Queensland, Sensory Neurobiology Group, 4072, Brisbane, QLD, Australia
| | - Karen L. Carleton
- Department of Biology, The University of Maryland, College Park, MD, 20742, USA
| | - Alisa Pietzker
- Queensland Brain Institute, The University of Queensland, Sensory Neurobiology Group, 4072, Brisbane, QLD, Australia
| | - Karen L. Cheney
- Queensland Brain Institute, The University of Queensland, Sensory Neurobiology Group, 4072, Brisbane, QLD, Australia
- School of Biological Sciences, The University of Queensland, 4072, Brisbane, QLD, Australia
| | - N. Justin Marshall
- Queensland Brain Institute, The University of Queensland, Sensory Neurobiology Group, 4072, Brisbane, QLD, Australia
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21
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Cavallaro M, Battaglia P, Guerrera MC, Abbate F, Levanti MB, Ammendolia G, Andaloro F, Germanà A, Laurà R. Structure and ultrastructure study on photophores of the Madeira lanternfish, Ceratoscopelus maderensis
(Lowe, 1839), Pisces: Myctophidae. ACTA ZOOL-STOCKHOLM 2017. [DOI: 10.1111/azo.12236] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Mauro Cavallaro
- Department of Veterinary Sciences; University of Messina; Messina Italy
| | - Pietro Battaglia
- BIO-CIT; ISPRA (Istituto Superiore per la Protezione e la Ricerca Ambientale); Milazzo Italy
| | | | - Francesco Abbate
- Department of Veterinary Sciences; University of Messina; Messina Italy
| | | | | | - Franco Andaloro
- BIO-CIT; ISPRA, (Istituto Superiore per la Protezione e la Ricerca Ambientale); Palermo Italy
| | - Antonino Germanà
- Department of Veterinary Sciences; University of Messina; Messina Italy
| | - Rosaria Laurà
- Department of Veterinary Sciences; University of Messina; Messina Italy
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