Fuzzy entropy DEMATEL inference system for accurate and efficient cardiovascular disease diagnosis

The global population is at risk from both communicable and non-communicable deadly diseases, including cardiovascular disease. Early detection and prevention of cardiovascular disease require an accurate self-detection model. Therefore, this study introduces a novel fuzzy entropy DEMATEL inference system for accurate self-detection of cardiovascular disease. It combines fuzzy DEMATEL, entropy, and Mamdani fuzzy inference, utilizing innovative strategies like attribute reduction, entropy-based clustering, influential factor selection, and rule reduction. The system achieves high accuracy (98.69%) and sensitivity (98.62%), outperforming existing methods. Validation includes satisfactory factor analysis, performance measures and statistical analysis, demonstrating its effectiveness in addressing complexity and prioritizing factors.

Revolutionizing heart disease prediction with quantum-enhanced machine learning

The recent developments in quantum technology have opened up new opportunities for machine learning algorithms to assist the healthcare industry in diagnosing complex health disorders, such as heart disease. In this work, we summarize the effectiveness of QuEML in heart disease prediction. To evaluate the performance of QuEML against traditional machine learning algorithms, the Kaggle heart disease dataset was used which contains 1190 samples out of which 53% of samples are labeled as positive samples and rest 47% samples are labeled as negative samples. The performance of QuEML was evaluated in terms of accuracy, precision, recall, specificity, F1 score, and training time against traditional machine learning algorithms. From the experimental results, it has been observed that proposed quantum approaches predicted around 50.03% of positive samples as positive and an average of 44.65% of negative samples are predicted as negative whereas traditional machine learning approaches could predict around 49.78% of positive samples as positive and 44.31% of negative samples as negative. Furthermore, the computational complexity of QuEML was measured which consumed average of 670 µs for its training whereas traditional machine learning algorithms could consume an average 862.5 µs for training. Hence, QuEL was found to be a promising approach in heart disease prediction with an accuracy rate of 0.6% higher and training time of 192.5 µs faster than that of traditional machine learning approaches.

BIR: Biomedical Information Retrieval System for Cancer Treatment in Electronic Health Record Using Transformers

The rapid growth of electronic health records (EHRs) has led to unprecedented biomedical data. Clinician access to the latest patient information can improve the quality of healthcare. However, clinicians have difficulty finding information quickly and easily due to the sheer data mining volume. Biomedical information retrieval (BIR) systems can help clinicians find the information required by automatically searching EHRs and returning relevant results. However, traditional BIR systems cannot understand the complex relationships between EHR entities. Transformers are a new type of neural network that is very effective for natural language processing (NLP) tasks. As a result, transformers are well suited for tasks such as machine translation and text summarization. In this paper, we propose a new BIR system for EHRs that uses transformers for predicting cancer treatment from EHR. Our system can understand the complex relationships between the different entities in an EHR, which allows it to return more relevant results to clinicians. We evaluated our system on a dataset of EHRs and found that it outperformed state-of-the-art BIR systems on various tasks, including medical question answering and information extraction. Our results show that Transformers are a promising approach for BIR in EHRs, reaching an accuracy and an F1-score of 86.46%, and 0.8157, respectively. We believe that our system can help clinicians find the information they need more quickly and easily, leading to improved patient care.

A Review on Electronic Health Record Text-Mining for Biomedical Name Entity Recognition in Healthcare Domain

Biomedical-named entity recognition (bNER) is critical in biomedical informatics. It identifies biomedical entities with special meanings, such as people, places, and organizations, as predefined semantic types in electronic health records (EHR). bNER is essential for discovering novel knowledge using computational methods and Information Technology. Early bNER systems were configured manually to include domain-specific features and rules. However, these systems were limited in handling the complexity of the biomedical text. Recent advances in deep learning (DL) have led to the development of more powerful bNER systems. DL-based bNER systems can learn the patterns of biomedical text automatically, making them more robust and efficient than traditional rule-based systems. This paper reviews the healthcare domain of bNER, using DL techniques and artificial intelligence in clinical records, for mining treatment prediction. bNER-based tools are categorized systematically and represent the distribution of input, context, and tag (encoder/decoder). Furthermore, to create a labeled dataset for our machine learning sentiment analyzer to analyze the sentiment of a set of tweets, we used a manual coding approach and the multi-task learning method to bias the training signals with domain knowledge inductively. To conclude, we discuss the challenges facing bNER systems and future directions in the healthcare field.

Fuzzy AHP point factored inference system for detection of cardiovascular disease

The World health organization (WHO) reported that cardiovascular disease is the leading cause of death worldwide, particularly in developing countries. But while diagnosing cardiovascular disease, medical practitioners might have differences of opinions and faced challenging when there is inadequate information and uncertainty of the problem. Therefore, to resolve ambiguity and vagueness in diagnosing disease, a perfect decision-making model is required to assist medical practitioners in detecting the disease at an early stage. Thus, this study designs a fuzzy analytic hierarchy process (FAHP) point-factored inference system to detect cardiovascular disease. The attributes are selected and classified into sub-attributes and point factor scale using the clinical data, medical practitioners, and literature review. Fuzzy AHP is used in calculating the attribute weights, the strings are generated using the Mamdani fuzzy inference system, and the strength of each set of fuzzy rules is calculated by multiplying the attribute weights with the point factor scale. The string weights determine the output ranges of cardiovascular disease. Moreover, the results are validated using sensitivity analysis, and comparative analysis is performed with AHP techniques. The results show that the proposed method outperforms other methods, which are elucidated by the case study.

Comparative Study of Fuzzy Rule-Based Classifiers for Medical Applications

The use of machine learning in medical decision support systems can improve diagnostic accuracy and objectivity for clinical experts. In this study, we conducted a comparison of 16 different fuzzy rule-based algorithms applied to 12 medical datasets and real-world data. The results of this comparison showed that the best performing algorithms in terms of average results of Matthews correlation coefficient (MCC), area under the curve (AUC), and accuracy (ACC) was a classifier based on fuzzy logic and gene expression programming (GPR), repeated incremental pruning to produce error reduction (Ripper), and ordered incremental genetic algorithm (OIGA), respectively. We also analyzed the number and size of the rules generated by each algorithm and provided examples to objectively evaluate the utility of each algorithm in clinical decision support. The shortest and most interpretable rules were generated by 1R, GPR, and C45Rules-C. Our research suggests that GPR is capable of generating concise and interpretable rules while maintaining good classification performance, and it may be a valuable algorithm for generating rules from medical data.

Enhanced Laterality Index: A Novel Measure for Hemispheric Asymmetry

During sleep, the two hemispheres display asymmetries in their activation pattern. Various hemispheric asymmetry measures have been utilized in existing works. Nevertheless, all these measures have one common problem that they would merely take one representative quantity into account when evaluating the functional asymmetry. However, there is a complex series of information exchanges between the two cerebral hemispheres, and only considering one quantity inevitably leads to one-sided or even incorrect conclusions. Consequently, to address the limitation of conventional laterality indices, we propose the so-called enhanced laterality index (ELI), which considers multiple measures of functional asymmetries. Normal sleep and obstructive sleep apnea electroencephalograms (EEGs) from 21 subjects collected in the clinical acquisition system are applied, and two representative quantities are considered simultaneously in this paper. We measure the signal complexity by using fuzzy entropy, and the signal strength is evaluated by calculating EEG energy. The difference of ELI is demonstrated by the comparison with the traditional laterality index (LI) in evaluating the functional asymmetry during sleep.

Machine Learning-Based Automated Diagnostic Systems Developed for Heart Failure Prediction Using Different Types of Data Modalities: A Systematic Review and Future Directions

One of the leading causes of deaths around the globe is heart disease. Heart is an organ that is responsible for the supply of blood to each part of the body. Coronary artery disease (CAD) and chronic heart failure (CHF) often lead to heart attack. Traditional medical procedures (angiography) for the diagnosis of heart disease have higher cost as well as serious health concerns. Therefore, researchers have developed various automated diagnostic systems based on machine learning (ML) and data mining techniques. ML-based automated diagnostic systems provide an affordable, efficient, and reliable solutions for heart disease detection. Various ML, data mining methods, and data modalities have been utilized in the past. Many previous review papers have presented systematic reviews based on one type of data modality. This study, therefore, targets systematic review of automated diagnosis for heart disease prediction based on different types of modalities, i.e., clinical feature-based data modality, images, and ECG. Moreover, this paper critically evaluates the previous methods and presents the limitations in these methods. Finally, the article provides some future research directions in the domain of automated heart disease detection based on machine learning and multiple of data modalities.

Synthetic PPG signal Generation to Improve Coronary Artery Disease Classification: Study with Physical Model of Cardiovascular System

This paper presents a novel approach of generating synthetic Photoplethysmogram (PPG) data using a physical model of the cardiovascular system to improve classifier performance with a combination of synthetic and real data. The physical model is an in-silico cardiac computational model, consisting of a four-chambered heart with electrophysiology, hemodynamic, and blood pressure autoregulation functionality. Starting with a small number of measured PPG data, the cardiac model is used to synthesize healthy as well as PPG time-series pertaining to coronary artery disease (CAD) by varying pathophysiological parameters. A Variational Autoencoder (VAE) structure is proposed to derive a statistical feature space for CAD classification. Results are presented in two perspectives namely, (i) using artificially reduced real disease data and (ii) using all the real disease data. In both cases, by augmenting with the synthetic data for training, the performance (sensitivity, specificity) of the classifier changes from (i) (0.65, 1) to (1, 0.9) and (ii) (1, 0.95) to (1,1). The proposed hybrid approach of combining physical modelling and statistical feature space selection generates realistic PPG data with pathophysiological interpretation and can outperform a baseline Generative Adversarial Network (GAN) architecture with a relatively small amount of real data for training. This proposed method could aid as a substitution technique for handling the problem of bulk data required for training machine learning algorithms for cardiac health-care applications.

Prediction of Coronary Heart Disease Based on Combined Reinforcement Multitask Progressive Time-Series Networks

Coronary heart disease is the first killer of human health. At present, the most widely used approach of coronary heart disease diagnosis is coronary angiography, a surgery that could potentially cause some physical damage to the patients, together with some complications and adverse reactions. Furthermore, coronary angiography is expensive thus cannot be widely used in under development country. On the other hand, the heart color Doppler echocardiography report, blood biochemical indicators and other basic information(patients' gender, age, diabetes…) can reflect the degree of heart damage in patients to some extent. This paper proposes a combined reinforcement multitask progressive time-series networks (CRMPTN) model to predict the grade of coronary heart disease through heart color Doppler echocardiography report, blood biochemical indicators and ten basic body information items about the patients. In this model, the first step is to perform deep reinforcement learning (DRL) pre-training through asynchronous advantage actor-critic (A3C). Training data is adopted to optimize the recurrent neural network (RNN) that parameterizes the stochastic policy. In the second step, soft parameter sharing module, hard parameter sharing module and progressive time-series networks are used to predict the status of coronary heart disease. The experimental results show that after DRL pre-training, the multiple tasks in the model interact with each other and learn together to achieve satisfactory results and outperform other state-of-the-art methods.

Coronary artery disease detection using artificial intelligence techniques: A survey of trends, geographical differences and diagnostic features 1991-2020

While coronary angiography is the gold standard diagnostic tool for coronary artery disease (CAD), but it is associated with procedural risk, it is an invasive technique requiring arterial puncture, and it subjects the patient to radiation and iodinated contrast exposure. Artificial intelligence (AI) can provide a pretest probability of disease that can be used to triage patients for angiography. This review comprehensively investigates published papers in the domain of CAD detection using different AI techniques from 1991 to 2020, in order to discern broad trends and geographical differences. Moreover, key decision factors affecting CAD diagnosis are identified for different parts of the world by aggregating the results from different studies. In this study, all datasets that have been used for the studies for CAD detection, their properties, and achieved performances using various AI techniques, are presented, compared, and analyzed. In particular, the effectiveness of machine learning (ML) and deep learning (DL) techniques to diagnose and predict CAD are reviewed. From PubMed, Scopus, Ovid MEDLINE, and Google Scholar search, 500 papers were selected to be investigated. Among these selected papers, 256 papers met our criteria and hence were included in this study. Our findings demonstrate that AI-based techniques have been increasingly applied for the detection of CAD since 2008. AI-based techniques that utilized electrocardiography (ECG), demographic characteristics, symptoms, physical examination findings, and heart rate signals, reported high accuracy for the detection of CAD. In these papers, the authors ranked the features based on their assessed clinical importance with ML techniques. The results demonstrate that the attribution of the relative importance of ML features for CAD diagnosis is different among countries. More recently, DL methods have yielded high CAD detection performance using ECG signals, which drives its burgeoning adoption.

A Drug Decision Support System for Developing a Successful Drug Candidate Using Machine Learning Techniques

BACKGROUND

Virtual screening of candidate drug molecules using machine learning techniques plays a key role in pharmaceutical industry to design and discovery of new drugs. Computational classification methods can determine drug types according to the disease groups and distinguish approved drugs from withdrawn ones.

INTRODUCTION

Classification models developed in this study can be used as a simple filter in drug modelling to eliminate potentially inappropriate molecules in the early stages. In this work, we developed a Drug Decision Support System (DDSS) to classify each drug candidate molecule as potentially drug or non-drug and to predict its disease group.

METHODS

Molecular descriptors were identified for the determination of a number of rules in drug molecules. They were derived using ADRIANA.Code program and Lipinski's rule of five. We used Artificial Neural Network (ANN) to classify drug molecules correctly according to the types of diseases. Closed frequent molecular structures in the form of subgraph fragments were also obtained with Gaston algorithm included in ParMol Package to find common molecular fragments for withdrawn drugs.

RESULTS

We observed that TPSA, XlogP Natoms, HDon_O and TPSA are the most distinctive features in the pool of the molecular descriptors and evaluated the performances of classifiers on all datasets and found that classification accuracies are very high on all the datasets. Neural network models achieved 84.6% and 83.3% accuracies on test sets including cardiac therapy, anti-epileptics and anti-parkinson drugs with approved and withdrawn drugs for drug classification problems.

CONCLUSION

The experimental evaluation shows that the system is promising at determination of potential drug molecules to classify drug molecules correctly according to the types of diseases.

Machine learning-based coronary artery disease diagnosis: A comprehensive review

Coronary artery disease (CAD) is the most common cardiovascular disease (CVD) and often leads to a heart attack. It annually causes millions of deaths and billions of dollars in financial losses worldwide. Angiography, which is invasive and risky, is the standard procedure for diagnosing CAD. Alternatively, machine learning (ML) techniques have been widely used in the literature as fast, affordable, and noninvasive approaches for CAD detection. The results that have been published on ML-based CAD diagnosis differ substantially in terms of the analyzed datasets, sample sizes, features, location of data collection, performance metrics, and applied ML techniques. Due to these fundamental differences, achievements in the literature cannot be generalized. This paper conducts a comprehensive and multifaceted review of all relevant studies that were published between 1992 and 2019 for ML-based CAD diagnosis. The impacts of various factors, such as dataset characteristics (geographical location, sample size, features, and the stenosis of each coronary artery) and applied ML techniques (feature selection, performance metrics, and method) are investigated in detail. Finally, the important challenges and shortcomings of ML-based CAD diagnosis are discussed.

A novel approach for the prediction of treadmill test in cardiology using data mining algorithms implemented as a mobile application

OBJECTIVE

To develop a mobile app called "TMT Predict" to predict the results of Treadmill Test (TMT), using data mining techniques applied to a clinical dataset using minimal clinical attributes. To prospectively test the results of the app in realtime to TMT and correlate with coronary angiogram results.

METHODS

In this study, instead of statistics, data mining approach has been utilized for the prediction of the results of TMT by analyzing the clinical records of 1000 cardiac patients. This research employed the Decision Tree algorithm, a new modified version of K-Nearest Neighbor (KNN) algorithm, K-Sorting and Searching (KSS). Furthermore, curve fitting mathematical technique was used to improve the Accuracy. The system used six clinical attributes such as age, gender, body mass index (BMI), dyslipidemia, diabetes mellitus and systemic hypertension. An Android app called "TMT Predict" was developed, wherein all three inputs were combined and analyzed. The final result is based on the dominating values of the three results. The app was further tested prospectively in 300 patients to predict the results of TMT and correlate with Coronary angiography.

RESULTS

The accuracy of predicting the result of a TMT using data mining algorithms, Decision Tree and K-Sorting & Searching (KSS) were 73% and 78%, respectively. The mathematical method curve fitting predicted with 82% accuracy. The accuracy of the mobile app "TMT Predict", improved to 84%. Age-wise analysis of the results show that the accuracy of the app dips when the age is more than 60years indicating that there may be other factors like retirement stress that may have to be included. This gives scope for future research also. In the prospective study, the positive and negative predictive values of the app for the results of TMT and coronary angiogram were found to be 40% and 83% for TMT and 52% and 80% for coronary angiogram. The negative predictive value of the app was high, indicating that it is a good screening tool to rule out coronary artery heart disease (CAHD).

CONCLUSION

"TMT Predict" is a simple user-friendly android app, which uses six simple clinical attributes to predict the results of TMT. The app has a high negative predictive value indicating that it is a useful tool to rule out CAHD. The "TMT Predict" could be a future digital replacement for the manual TMT as an initial screening tool to rule out CAHD.

Non-invasive detection of coronary artery disease in high-risk patients based on the stenosis prediction of separate coronary arteries

BACKGROUND AND OBJECTIVE

Cardiovascular diseases are an extremely widespread sickness and account for 17 million deaths in the world per annum. Coronary artery disease (CAD) is one of such diseases with an annual mortality rate of about 7 million. Thus, early diagnosis of CAD is of vital importance. Angiography is currently the modality of choice for the detection of CAD. However, its complications and costs have prompted researchers to seek alternative methods via machine learning algorithms.

METHODS

The present study proposes a novel machine learning algorithm. The proposed algorithm uses three classifiers for detection of the stenosis of three coronary arteries, i.e., left anterior descending (LAD), left circumflex (LCX) and right coronary artery (RCA) to get higher accuracy for CAD diagnosis.

RESULTS

This method was applied on the extension of Z-Alizadeh Sani dataset which contains demographic, examination, ECG, and laboratory and echo data of 500 patients. This method achieves an accuracy, sensitivity and specificity rates of 96.40%, 100% and 88.1%, respectively for the detection of CAD. To our knowledge, such high rates of accuracy and sensitivity have not been attained elsewhere before.

CONCLUSION

This new algorithm reliably distinguishes those with normal coronary arteries from those with CAD which may obviate the need for angiography in the normal group.

A Systematic Review on Healthcare Analytics: Application and Theoretical Perspective of Data Mining

The growing healthcare industry is generating a large volume of useful data on patient demographics, treatment plans, payment, and insurance coverage—attracting the attention of clinicians and scientists alike. In recent years, a number of peer-reviewed articles have addressed different dimensions of data mining application in healthcare. However, the lack of a comprehensive and systematic narrative motivated us to construct a literature review on this topic. In this paper, we present a review of the literature on healthcare analytics using data mining and big data. Following Preferred Reporting Items for Systematic Reviews and Meta-Analyses (PRISMA) guidelines, we conducted a database search between 2005 and 2016. Critical elements of the selected studies—healthcare sub-areas, data mining techniques, types of analytics, data, and data sources—were extracted to provide a systematic view of development in this field and possible future directions. We found that the existing literature mostly examines analytics in clinical and administrative decision-making. Use of human-generated data is predominant considering the wide adoption of Electronic Medical Record in clinical care. However, analytics based on website and social media data has been increasing in recent years. Lack of prescriptive analytics in practice and integration of domain expert knowledge in the decision-making process emphasizes the necessity of future research.

Automated Diagnosis of Coronary Artery Disease: A Review and Workflow

Coronary artery disease (CAD) is the most dangerous heart disease which may lead to sudden cardiac death. However, CAD diagnoses are quite expensive and time-consuming procedures which a patient need to go through. The aim of our paper is to present a unique review of state-of-the-art methods up to 2017 for automatic CAD classification. The protocol of review methods is identifying best methods and classifier for CAD identification. The study proposes two workflows based on two parameter sets for instances A and B. It is necessary to follow the proper procedure, for future evaluation process of automatic diagnosis of CAD. The initial two stages of the parameter set A workflow are preprocessing and feature extraction. Subsequently, stages (feature selection and classification) are same for both workflows. In literature, the SVM classifier represents a promising approach for CAD classification. Moreover, the limitation leads to extract proper features from noninvasive signals.

Diagnosis of coronary artery disease using an efficient hash table based closed frequent itemsets mining

This paper proposes an efficient hash table based closed frequent itemsets (HCFI) mining algorithm to envisage coronary artery disease early. HCFI algorithm generates closed frequent itemsets efficiently by performing intersection operation on transaction id's of itemset without considering the name of item/itemset. The employed hash table reduces search efficiency to O(1) or constant time. HCFI algorithm is applied on the UCI (University of California, Irvine) Cleveland dataset, a biological database of cardiovascular disease to generate closed frequent itemsets on the dataset. The findings of HCFI algorithm are (1) it determines a set of distinguished features to differentiate a 'healthy' and a 'sick' class. The features such as heart status being normal, oldpeak being less than or equal to 1.2, slope being up, number of vessels colored being zero, absence of exercise-induced angina, maximum heart rate achieved between 151 and 180 are referred as 'healthy' class. The features like chest pain are being asymptomatic, heart-status being reversible defect, slope being flat, and presence of exercise-induced-angina and serum cholesterol being greater than 240 indicate a presumption of heart disease to both genders. (2) It predicts that females have less chance of coronary heart disease than males. This algorithm is also compared with two other state-of-the-art-algorithms 'NAFCP' (N-list based algorithm for mining frequent closed patterns) and 'PredictiveApriori' to show the effectiveness of the proposed algorithm.

Systematic mapping study of data mining–based empirical studies in cardiology

Data mining provides the methodology and technology to transform huge amount of data into useful information for decision making. It is a powerful process to extract knowledge and discover new patterns embedded in large data sets. Data mining has been increasingly used in medicine, particularly in cardiology. In fact, data mining applications can greatly benefits all parts involved in cardiology such as patients, cardiologists and nurses. This article aims to perform a systematic mapping study so as to analyze and synthesize empirical studies on the application of data mining techniques in cardiology. A total of 142 articles published between 2000 and 2015 were therefore selected, studied and analyzed according to the four following criteria: year and channel of publication, research type, medical task and empirical type. The results of this mapping study are discussed and a list of recommendations for researchers and cardiologists is provided.

Deep Belief Networks for Electroencephalography: A Review of Recent Contributions and Future Outlooks

Deep learning, a relatively new branch of machine learning, has been investigated for use in a variety of biomedical applications. Deep learning algorithms have been used to analyze different physiological signals and gain a better understanding of human physiology for automated diagnosis of abnormal conditions. In this paper, we provide an overview of deep learning approaches with a focus on deep belief networks in electroencephalography applications. We investigate the state-of-the-art algorithms for deep belief networks and then cover the application of these algorithms and their performances in electroencephalographic applications. We covered various applications of electroencephalography in medicine, including emotion recognition, sleep stage classification, and seizure detection, in order to understand how deep learning algorithms could be modified to better suit the tasks desired. This review is intended to provide researchers with a broad overview of the currently existing deep belief network methodology for electroencephalography signals, as well as to highlight potential challenges for future research.

Comparison of coronary artery disease guidelines with extracted knowledge from data mining

Introduction: Coronary artery disease (CAD) is one of the major causes of disability and death in the world. Accordingly utilizing from a national and update guideline in heart-related disease are essential. Finding interesting rules from CAD data and comparison with guidelines was the objectives of this study. Methods: In this study 1993 valid and completed records related to patients (from 2009 to 2014) who had suffered from CAD were recruited and analyzed. Total of 25 variable including a target variable (CAD) and 24 inputs or predictor variables were used for knowledge discovery. To perform comparison between extracted knowledge and well trusted guidelines, Canadian Cardiovascular Society (CCS) guideline and US National Institute of Health (NIH) guideline were selected. Results of valid datamining rules were compared with guidelines and then were ranked based on their importance. Results: The most significant factor influencing CAD was chest pain. Elderly males (age >54) have a high probability to be diagnosed with CAD. Diagnostic methods that are listed in guidelines were confirmed and ranked based on analyzing of local CAD patients data. Knowledge discovery revealed that blood test has more diagnostic value among other medical tests that were recommended in guidelines. Conclusion: Guidelines confirm the achieved results from data mining (DM) techniques and help to rank important risk factors based on national and local information. Evaluation of extracted rules determined new patterns for CAD patients.

Computer aided decision making for heart disease detection using hybrid neural network-Genetic algorithm

Cardiovascular disease is one of the most rampant causes of death around the world and was deemed as a major illness in Middle and Old ages. Coronary artery disease, in particular, is a widespread cardiovascular malady entailing high mortality rates. Angiography is, more often than not, regarded as the best method for the diagnosis of coronary artery disease; on the other hand, it is associated with high costs and major side effects. Much research has, therefore, been conducted using machine learning and data mining so as to seek alternative modalities. Accordingly, we herein propose a highly accurate hybrid method for the diagnosis of coronary artery disease. As a matter of fact, the proposed method is able to increase the performance of neural network by approximately 10% through enhancing its initial weights using genetic algorithm which suggests better weights for neural network. Making use of such methodology, we achieved accuracy, sensitivity and specificity rates of 93.85%, 97% and 92% respectively, on Z-Alizadeh Sani dataset.

hs-CRP is strongly associated with coronary heart disease (CHD): A data mining approach using decision tree algorithm

BACKGROUND AND AIMS

Coronary heart disease (CHD) is an important public health problem globally. Algorithms incorporating the assessment of clinical biomarkers together with several established traditional risk factors can help clinicians to predict CHD and support clinical decision making with respect to interventions. Decision tree (DT) is a data mining model for extracting hidden knowledge from large databases. We aimed to establish a predictive model for coronary heart disease using a decision tree algorithm.

METHODS

Here we used a dataset of 2346 individuals including 1159 healthy participants and 1187 participant who had undergone coronary angiography (405 participants with negative angiography and 782 participants with positive angiography). We entered 10 variables of a total 12 variables into the DT algorithm (including age, sex, FBG, TG, hs-CRP, TC, HDL, LDL, SBP and DBP).

RESULTS

Our model could identify the associated risk factors of CHD with sensitivity, specificity, accuracy of 96%, 87%, 94% and respectively. Serum hs-CRP levels was at top of the tree in our model, following by FBG, gender and age.

CONCLUSION

Our model appears to be an accurate, specific and sensitive model for identifying the presence of CHD, but will require validation in prospective studies.

A Boolean Consistent Fuzzy Inference System for Diagnosing Diseases and Its Application for Determining Peritonitis Likelihood

Fuzzy inference systems (FIS) enable automated assessment and reasoning in a logically consistent manner akin to the way in which humans reason. However, since no conventional fuzzy set theory is in the Boolean frame, it is proposed that Boolean consistent fuzzy logic should be used in the evaluation of rules. The main distinction of this approach is that it requires the execution of a set of structural transformations before the actual values can be introduced, which can, in certain cases, lead to different results. While a Boolean consistent FIS could be used for establishing the diagnostic criteria for any given disease, in this paper it is applied for determining the likelihood of peritonitis, as the leading complication of peritoneal dialysis (PD). Given that patients could be located far away from healthcare institutions (as peritoneal dialysis is a form of home dialysis) the proposed Boolean consistent FIS would enable patients to easily estimate the likelihood of them having peritonitis (where a high likelihood would suggest that prompt treatment is indicated), when medical experts are not close at hand.

Indicators of hypertriglyceridemia from anthropometric measures based on data mining

BACKGROUND

The best indicator for the prediction of hypertriglyceridemia derived from anthropometric measures of body shape remains a matter of debate. The objectives are to determine the strongest predictor of hypertriglyceridemia from anthropometric measures and to investigate whether a combination of measures can improve the prediction accuracy compared with individual measures.

METHODS

A total of 5517 subjects aged 20-90 years participated in this study. The numbers of normal and hypertriglyceridemia subjects were 3022 and 653 females, respectively, and 1306 and 536 males, respectively. We evaluated 33 anthropometric measures for the prediction of hypertriglyceridemia using statistical analysis and data mining.

RESULTS

In the 20-90-year-old groups, age in women was the variable that exhibited the highest predictive power; however, this was not the case in men in all age groups. Of the anthropometric measures, the waist-to-height ratio (WHtR) was the best predictor of hypertriglyceridemia in women. In men, the rib-to-forehead circumference ratio (RFcR) was the strongest indicator. The use of a combination of measures provides better predictive power compared with individual measures in both women and men. However, in the subgroups of ages 20-50 and 51-90 years, the strongest indicators for hypertriglyceridemia were rib circumference in the 20-50-year-old group and WHtR in the 51-90-year-old group in women and RFcR in the 20-50-year-old group and BMI in the 51-90-year-old group in men.

CONCLUSIONS

Our results demonstrated that the best predictor of hypertriglyceridemia may differ according to gender and age.

Cardiovascular risk analysis by means of pulse morphology and clustering methodologies

The purpose of this study was the development of a clustering methodology to deal with arterial pressure waveform (APW) parameters to be used in the cardiovascular risk assessment. One hundred sixteen subjects were monitored and divided into two groups. The first one (23 hypertensive subjects) was analyzed using APW and biochemical parameters, while the remaining 93 healthy subjects were only evaluated through APW parameters. The expectation maximization (EM) and k-means algorithms were used in the cluster analysis, and the risk scores (the Framingham Risk Score (FRS), the Systematic COronary Risk Evaluation (SCORE) project, the Assessing cardiovascular risk using Scottish Intercollegiate Guidelines Network (ASSIGN) and the PROspective Cardiovascular Münster (PROCAM)), commonly used in clinical practice were selected to the cluster risk validation. The result from the clustering risk analysis showed a very significant correlation with ASSIGN (r=0.582, p<0.01) and a significant correlation with FRS (r=0.458, p<0.05). The results from the comparison of both groups also allowed to identify the cluster with higher cardiovascular risk in the healthy group. These results give new insights to explore this methodology in future scoring trials.

Computer-aided diagnosis system based on fuzzy logic for breast cancer categorization

BACKGROUND

Fuzzy logic can help reduce the difficulties faced by computational systems to represent and simulate the reasoning and the style adopted by radiologists in the process of medical image analysis. The study described in this paper consists of a new method that applies fuzzy logic concepts to improve the representation of features related to image description in order to make it semantically more consistent. Specifically, we have developed a computer-aided diagnosis tool for automatic BI-RADS categorization of breast lesions. The user provides parameters such as contour, shape and density and the system gives a suggestion about the BI-RADS classification.

METHODS

Initially, values of malignancy were defined for each image descriptor, according to the BI-RADS standard. When analyzing contour, for example, our method considers the matching of features and linguistic variables. Next, we created the fuzzy inference system. The generation of membership functions was carried out by the Fuzzy Omega algorithm, which is based on the statistical analysis of the dataset. This algorithm maps the distribution of different classes in a set.

RESULTS

Images were analyzed by a group of physicians and the resulting evaluations were submitted to the Fuzzy Omega algorithm. The results were compared, achieving an accuracy of 76.67% for nodules and 83.34% for calcifications.

CONCLUSIONS

The fit of definitions and linguistic rules to numerical models provided by our method can lead to a tighter connection between the specialist and the computer system, yielding more effective and reliable results.

A New Approach for Coronary Artery Diseases Diagnosis Based on Genetic Algorithm

Feature Selection (FS) has become the motivation of much research on decision support systems areas for which datasets with large number of features are analyzed. This paper presents a new method for the diagnosis of Coronary Artery Diseases (CAD) founded on Genetic Algorithm (GA) wrapper Bayes Naïve (BN). Initially, thirteen attributes were involved in predicting CAD. In GA–BN algorithm, GA produces in each iteration a subset of attributes that will be evaluated using the BN in the second step of the selection procedure. The final result set of attribute holds the most pertinent feature model that increases the accuracy. The accuracy results showed that the algorithm produces 85.50% classification accuracy in the diagnosis of CAD. Therefore, the strength of the Algorithm is then compared with other machine learning algorithms such as Support Vector Machine (SVM), Multi-Layer Perceptron (MLP) and C4.5 decision tree Algorithm. The result of classification accuracy for those algorithms are respectively 83.5%, 83.16% and 80.85%. Then, the GA wrapper BN Algorithm is similarly compared with other FS algorithms. The Obtained results have shown very favorable outcomes for the diagnosis of CAD.

A novel computerized tool to stratify risk in carotid atherosclerosis using kinematic features of the arterial wall

Valid characterization of carotid atherosclerosis (CA) is a crucial public health issue, which would limit the major risks held by CA for both patient safety and state economies. This paper investigated the unexplored potential of kinematic features in assisting the diagnostic decision for CA in the framework of a computer-aided diagnosis (CAD) tool. To this end, 15 CAD schemes were designed and were fed with a wide variety of kinematic features of the atherosclerotic plaque and the arterial wall adjacent to the plaque for 56 patients from two different hospitals. The CAD schemes were benchmarked in terms of their ability to discriminate between symptomatic and asymptomatic patients and the combination of the Fisher discriminant ratio, as a feature-selection strategy, and support vector machines, in the classification module, was revealed as the optimal motion-based CAD tool. The particular CAD tool was evaluated with several cross-validation strategies and yielded higher than 88% classification accuracy; the texture-based CAD performance in the same dataset was 80%. The incorporation of kinematic features of the arterial wall in CAD seems to have a particularly favorable impact on the performance of image-data-driven diagnosis for CA, which remains to be further elucidated in future prospective studies on large datasets.

Automatic classification of intracardiac tumor and thrombi in echocardiography based on sparse representation

Identification of intracardiac masses in echocardiograms is one important task in cardiac disease diagnosis. To improve diagnosis accuracy, a novel fully automatic classification method based on the sparse representation is proposed to distinguish intracardiac tumor and thrombi in echocardiography. First, a region of interest is cropped to define the mass area. Then, a unique globally denoising method is employed to remove the speckle and preserve the anatomical structure. Subsequently, the contour of the mass and its connected atrial wall are described by the K-singular value decomposition and a modified active contour model. Finally, the motion, the boundary as well as the texture features are processed by a sparse representation classifier to distinguish two masses. Ninety-seven clinical echocardiogram sequences are collected to assess the effectiveness. Compared with other state-of-the-art classifiers, our proposed method demonstrates the best performance by achieving an accuracy of 96.91%, a sensitivity of 100%, and a specificity of 93.02%. It explicates that our method is capable of classifying intracardiac tumors and thrombi in echocardiography, potentially to assist the cardiologists in the clinical practice.

Ant colony optimization algorithm for interpretable Bayesian classifiers combination: application to medical predictions

Prediction and classification techniques have been well studied by machine learning researchers and developed for several real-word problems. However, the level of acceptance and success of prediction models are still below expectation due to some difficulties such as the low performance of prediction models when they are applied in different environments. Such a problem has been addressed by many researchers, mainly from the machine learning community. A second problem, principally raised by model users in different communities, such as managers, economists, engineers, biologists, and medical practitioners, etc., is the prediction models’ interpretability. The latter is the ability of a model to explain its predictions and exhibit the causality relationships between the inputs and the outputs. In the case of classification, a successful way to alleviate the low performance is to use ensemble classiers. It is an intuitive strategy to activate collaboration between different classifiers towards a better performance than individual classier. Unfortunately, ensemble classifiers method do not take into account the interpretability of the final classification outcome. It even worsens the original interpretability of the individual classifiers. In this paper we propose a novel implementation of classifiers combination approach that does not only promote the overall performance but also preserves the interpretability of the resulting model. We propose a solution based on Ant Colony Optimization and tailored for the case of Bayesian classifiers. We validate our proposed solution with case studies from medical domain namely, heart disease and Cardiotography-based predictions, problems where interpretability is critical to make appropriate clinical decisions.

Availability

The datasets, Prediction Models and software tool together with supplementary materials are available at http://faculty.uaeu.ac.ae/salahb/ACO4BC.htm.