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Hynes MG, O'Dea A, Webster JM, Renema W. RADReef: A global Holocene Reef Rate of Accretion Dataset. Sci Data 2024; 11:398. [PMID: 38637551 PMCID: PMC11026384 DOI: 10.1038/s41597-024-03228-w] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/22/2023] [Accepted: 04/04/2024] [Indexed: 04/20/2024] Open
Abstract
Reef cores are a powerful tool for investigating temporal changes in reef communities. Radiometric dating facilitates the determination of vertical accretion rates, which has allowed for examination of local-regional controlling factors, such as subsidence and sea level changes. Coral reefs must grow at sufficient rates to keep up with sea level rise, or risk 'drowning.' As sea level is expected to rise significantly in the next 100 years and beyond, it is important to understand whether reefs will be able to survive. Historical records of reef accretion rates extracted from cores provide valuable insights into extrinsic controlling factors of reef growth and are instrumental in helping predict if future reefs can accrete at rates needed to overcome predicted sea level changes. While extensive research exists at local and regional scales, limited attention has been given to identifying global patterns and drivers. To address this, we present "RADReef": A global dataset of dated Holocene reef cores. RADReef serves as a foundation for further research on past, present and future reef accretion.
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Affiliation(s)
- Michael G Hynes
- Naturalis Biodiversity Center, PO Box 9517, 2300RA, Leiden, The Netherlands.
- Institute for Biodiversity and Ecosystem Dynamics (IBED), Universiteit van Amsterdam, P.O. Box 94240, 1090GE, Amsterdam, The Netherlands.
| | - Aaron O'Dea
- Smithsonian Tropical Research Institute, Box 0843-03092, Balboa, Republic of Panama
- Sistema Nacional de Investigación, SENACYT, Clayton, Republic of Panama
| | - Jody M Webster
- Geocoastal Research Group, School of Geosciences, The University of Sydney, Sydney, NSW, 2006, Australia
| | - Willem Renema
- Naturalis Biodiversity Center, PO Box 9517, 2300RA, Leiden, The Netherlands
- Institute for Biodiversity and Ecosystem Dynamics (IBED), Universiteit van Amsterdam, P.O. Box 94240, 1090GE, Amsterdam, The Netherlands
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2
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Banister RB, Viehman TS, Schopmeyer S, van Woesik R. Environmental predictors for the restoration of a critically endangered coral, Acropora palmata, along the Florida reef tract. PLoS One 2024; 19:e0296485. [PMID: 38166125 PMCID: PMC10760844 DOI: 10.1371/journal.pone.0296485] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/04/2023] [Accepted: 12/14/2023] [Indexed: 01/04/2024] Open
Abstract
The population decline and lack of natural recovery of multiple coral species along the Florida reef tract have instigated the expanding application of coral restoration and conservation efforts. Few studies, however, have determined the optimal locations for the survival of outplanted coral colonies from restoration nurseries. This study predicts the optimal locations for Acropora palmata colonies along the Florida reef tract using a boosted-regression-tree model to examine the relationships between the occurrence of wild A. palmata and ten environmental variables. Our model results predicted A. palmata was most likely to occur in shallow reef habitats with (i) generally low mean chlorophyll-a concentrations (< 1 mg m-3), (ii) moderate fetch (3 kJ m-2), (iii) salinities between 20 and 37.5 ppt, (iv) temperatures between 20 and 32°C, (vi) low mean concentrations of total nitrogen (0.16 ppm), and (iv) irradiance between 26.5 and 53.5 mol m-2 s-1. The most suitable habitats for A. palmata were disproportionately allocated to reefs in Biscayne Bay, the Upper Keys, the western-lower Florida Keys, the Marquesas, and the Dry Tortugas. The middle Florida Keys had unfavorable environmental conditions for A. palmata habitat. Results from this study inform where A. palmata, outplanted as part of restoration and conservation efforts, would have suitable environmental conditions to persist over time. This study also provides decision-making support for management focused on the conservation and restoration of the endangered species A. palmata along the Florida reef tract.
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Affiliation(s)
- Raymond B. Banister
- Institute for Global Ecology, Florida Institute of Technology, Melbourne, FL, United States of America
| | - T. Shay Viehman
- National Centers for Coastal Ocean Science, National Ocean Service, National Oceanic and Atmospheric Administration, Beaufort, NC, United States of America
| | - Stephanie Schopmeyer
- Florida Fish and Wildlife, Fish and Wildlife Research Initiative, St. Petersburg, FL, United States of America
| | - Robert van Woesik
- Institute for Global Ecology, Florida Institute of Technology, Melbourne, FL, United States of America
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3
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Becker CC, Weber L, Zgliczynski B, Sullivan C, Sandin S, Muller E, Clark AS, Kido Soule MC, Longnecker K, Kujawinski EB, Apprill A. Microorganisms and dissolved metabolites distinguish Florida's Coral Reef habitats. PNAS NEXUS 2023; 2:pgad287. [PMID: 37719750 PMCID: PMC10504872 DOI: 10.1093/pnasnexus/pgad287] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 03/20/2023] [Accepted: 08/24/2023] [Indexed: 09/19/2023]
Abstract
As coral reef ecosystems experience unprecedented change, effective monitoring of reef features supports management, conservation, and intervention efforts. Omic techniques show promise in quantifying key components of reef ecosystems including dissolved metabolites and microorganisms that may serve as invisible sensors for reef ecosystem dynamics. Dissolved metabolites are released by reef organisms and transferred among microorganisms, acting as chemical currencies and contributing to nutrient cycling and signaling on reefs. Here, we applied four omic techniques (taxonomic microbiome via amplicon sequencing, functional microbiome via shotgun metagenomics, targeted metabolomics, and untargeted metabolomics) to waters overlying Florida's Coral Reef, as well as microbiome profiling on individual coral colonies from these reefs to understand how microbes and dissolved metabolites reflect biogeographical, benthic, and nutrient properties of this 500-km barrier reef. We show that the microbial and metabolite omic approaches each differentiated reef habitats based on geographic zone. Further, seawater microbiome profiling and targeted metabolomics were significantly related to more reef habitat characteristics, such as amount of hard and soft coral, compared to metagenomic sequencing and untargeted metabolomics. Across five coral species, microbiomes were also significantly related to reef zone, followed by species and disease status, suggesting that the geographic water circulation patterns in Florida also impact the microbiomes of reef builders. A combination of differential abundance and indicator species analyses revealed metabolite and microbial signatures of specific reef zones, which demonstrates the utility of these techniques to provide new insights into reef microbial and metabolite features that reflect broader ecosystem processes.
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Affiliation(s)
- Cynthia C Becker
- Marine Chemistry and Geochemistry Department, Woods Hole Oceanographic Institution, Woods Hole, MA 02543, USA
- Biological Oceanography, Massachusetts Institute of Technology-Woods Hole Oceanographic Institution Joint Program in Oceanography/Applied Ocean Science and Engineering,Cambridge, MA 02139, USA
| | - Laura Weber
- Marine Chemistry and Geochemistry Department, Woods Hole Oceanographic Institution, Woods Hole, MA 02543, USA
| | - Brian Zgliczynski
- Scripps Institution of Oceanography, University of California San Diego, La Jolla, CA 92093, USA
| | - Chris Sullivan
- Scripps Institution of Oceanography, University of California San Diego, La Jolla, CA 92093, USA
| | - Stuart Sandin
- Scripps Institution of Oceanography, University of California San Diego, La Jolla, CA 92093, USA
| | - Erinn Muller
- Elizabeth Moore International Center for Coral Reef Research and Restoration, Mote Marine Laboratory, Summerland Key, FL 33042, USA
- Coral Health and Disease Program, Mote Marine Laboratory, Sarasota, FL 34236, USA
| | - Abigail S Clark
- Elizabeth Moore International Center for Coral Reef Research and Restoration, Mote Marine Laboratory, Summerland Key, FL 33042, USA
- Marine Science and Technology Department, The College of the Florida Keys, Key West, FL 33040, USA
| | - Melissa C Kido Soule
- Marine Chemistry and Geochemistry Department, Woods Hole Oceanographic Institution, Woods Hole, MA 02543, USA
| | - Krista Longnecker
- Marine Chemistry and Geochemistry Department, Woods Hole Oceanographic Institution, Woods Hole, MA 02543, USA
| | - Elizabeth B Kujawinski
- Marine Chemistry and Geochemistry Department, Woods Hole Oceanographic Institution, Woods Hole, MA 02543, USA
| | - Amy Apprill
- Marine Chemistry and Geochemistry Department, Woods Hole Oceanographic Institution, Woods Hole, MA 02543, USA
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4
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Gischler E, Hudson JH, Eisenhauer A, Parang S, Deveaux M. 9000 years of change in coral community structure and accretion in Belize reefs, western Atlantic. Sci Rep 2023; 13:11349. [PMID: 37443199 PMCID: PMC10345111 DOI: 10.1038/s41598-023-38118-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/16/2022] [Accepted: 07/03/2023] [Indexed: 07/15/2023] Open
Abstract
Tropical coral reefs, as prominent marine diversity hotspots, are in decline, and long-term studies help to improve understanding of the effects of global warming, sea-level rise, ocean acidification, deterioration of water quality, and disease. Here, we evaluated relative coral abundance and reef accretion rates over the past 9000 years in Belize barrier and atoll reefs, the largest reef system in the Atlantic Ocean. Acropora palmata and Orbicella spp. have been the most common corals. The abundance of competitive, fast-growing acroporids was constant over multi-millennial timescales. A decline in A. cervicornis abundance, however, and three centennial-scale gaps in A. palmata occurrence, suggest that the modern decline in acroporids was not unprecedented. Stress-tolerant corals predominate at the beginning of Holocene successions. Following the improvement of environmental conditions after inundation of the reef pedestal, their abundance has decreased. The abundance of weedy corals has increased during the Holocene underlining the importance of fecundity for the coral community. Reef-accretion rate, as calculated based on 76 new U-series age dates, has decreased over the Holocene and the mean value of 3.36 m kyr-1 is at the lower end of global reef growth compilations and predicted future rates of rise in sea level.
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Affiliation(s)
- Eberhard Gischler
- Institute of Geosciences, Goethe-University, 60438, Frankfurt am Main, Germany.
| | | | | | - Soran Parang
- Department of Earth and Environmental Sciences, University of Ottawa, Ottawa, ON, K1N 6N5, Canada
| | - Michael Deveaux
- GSI Helmholtz Center of Heavy Ion Research, 64291, Darmstadt, Germany
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5
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Sing Wong A, Vrontos S, Taylor ML. An assessment of people living by coral reefs over space and time. GLOBAL CHANGE BIOLOGY 2022; 28:7139-7153. [PMID: 36168958 PMCID: PMC9827914 DOI: 10.1111/gcb.16391] [Citation(s) in RCA: 7] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/21/2022] [Revised: 07/28/2022] [Accepted: 07/31/2022] [Indexed: 05/17/2023]
Abstract
Human populations near ecosystems are used as both a proxy for dependency on ecosystems, and conversely to estimate threats. Consequently, the number of people living near coral reefs is often used in regional coral reef management, evaluation of risk at regional and global scales, and even considerations of funding needs. Human populations and their statistics, are ever-changing and data relating to coral reefs have not been updated regularly. Here, we present an up-to-date analysis of the abundance, and density of people living within 5-100 km of coral reef ecosystems along with population proportion, using freely available data sets and replicable methods. We present trends of changes in human populations living near coral reefs over a 20-year time period (2000-2020), divided by region and country, along with socio-economic denominations such as country income category and Small Island Developing States (SIDS). We find that across 117 coral reef countries there are currently close to a billion people living within 100 km of a coral reef (~13% of the global population) compared with 762 million people in 2000. Population growth by coral reefs is higher than global averages. The Indian Ocean saw a 33% increase in populations within 100 km of a coral reef and 71% at 5 km. There are 60 countries with 100% of their population within 100 km of coral reefs. In SIDS, the proportion of the total population within 100 km of a coral reef is extremely high: 94% in 2020. Population density 5-10 km from coral reefs is 4× the global average. From 5 to 100 km, more people from lower-middle-income countries live by coral reefs than any other income category. Our findings provide the most up-to-date and extensive statistics on the regional and nation-level differences in population trends that play a large role in coral reef health and survival.
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Affiliation(s)
- Amy Sing Wong
- School of Life SciencesUniversity of EssexColchesterUK
| | - Spyridon Vrontos
- Department of Mathematical SciencesUniversity of EssexColchesterUK
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6
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Low net carbonate accretion characterizes Florida's coral reef. Sci Rep 2022; 12:19582. [PMID: 36379970 PMCID: PMC9666464 DOI: 10.1038/s41598-022-23394-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/01/2022] [Accepted: 10/31/2022] [Indexed: 11/16/2022] Open
Abstract
Coral reef habitat is created when calcium carbonate production by calcifiers exceeds removal by physical and biological erosion. Carbonate budget surveys provide a means of quantifying the framework-altering actions of diverse assemblages of marine species to determine net carbonate production, a single metric that encapsulates reef habitat persistence. In this study, carbonate budgets were calculated for 723 sites across the Florida Reef Tract (FRT) using benthic cover and parrotfish demographic data from NOAA's National Coral Reef Monitoring Program, as well as high-resolution LiDAR topobathymetry. Results highlight the erosional state of the majority of the study sites, with a trend towards more vulnerable habitat in the northern FRT, especially in the Southeast Florida region (- 0.51 kg CaCO3 m-2 year-1), which is in close proximity to urban centers. Detailed comparison of reef types reveals that mid-channel reefs in the Florida Keys have the highest net carbonate production (0.84 kg CaCO3 m-2 year-1) and indicates that these reefs may be hold-outs for reef development throughout the region. This study reports that Florida reefs, specifically their physical structure, are in a net erosional state. As these reefs lose structure, the ecosystem services they provide will be diminished, signifying the importance of increased protections and management efforts to offset these trends.
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7
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Toth LT, Courtney TA, Colella MA, Kupfner Johnson SA, Ruzicka RR. The past, present, and future of coral reef growth in the Florida Keys. GLOBAL CHANGE BIOLOGY 2022; 28:5294-5309. [PMID: 35789026 PMCID: PMC9542952 DOI: 10.1111/gcb.16295] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/25/2022] [Revised: 04/22/2022] [Accepted: 05/26/2022] [Indexed: 05/06/2023]
Abstract
Coral-reef degradation is driving global-scale reductions in reef-building capacity and the ecological, geological, and socioeconomic functions it supports. The persistence of those essential functions will depend on whether coral-reef management is able to rebalance the competing processes of reef accretion and erosion. Here, we reconstructed census-based carbonate budgets of 46 reefs throughout the Florida Keys from 1996 to 2019. We evaluated the environmental and ecological drivers of changing budget states and compared historical trends in reef-accretion potential to millennial-scale baselines of accretion from reef cores and future projections with coral restoration. We found that historically, most reefs had positive carbonate budgets, and many had reef-accretion potential comparable to the ~3 mm year-1 average accretion rate during the peak of regional reef building ~7000 years ago; however, declines in reef-building Acropora palmata and Orbicella spp. corals following a series of thermal stress events and coral disease outbreaks resulted in a shift from positive to negative budgets for most reefs in the region. By 2019, only ~15% of reefs had positive net carbonate production. Most of those reefs were in inshore, Lower Keys patch-reef habitats with low water clarity, supporting the hypothesis that environments with naturally low irradiance may provide a refugia from thermal stress. We caution that our estimated carbonate budgets are likely overly optimistic; comparison of reef-accretion potential to measured accretion from reef cores suggests that, by not accounting for the role of nonbiological physical and chemical erosion, census-based carbonate budgets may underestimate total erosion by ~1 mm year-1 (-1.15 kg CaCO3 m-2 year-1 ). Although the present state of Florida's reefs is dire, we demonstrate that the restoration of reef-building corals has the potential to help mitigate declines in reef accretion in some locations, which could allow some key ecosystem functions to be maintained until the threat of global climate change is addressed.
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Affiliation(s)
- Lauren T. Toth
- U.S. Geological SurveySt. Petersburg Coastal and Marine Science CenterSt. PetersburgFloridaUSA
| | - Travis A. Courtney
- Scripps Institution of OceanographyUniversity of California San DiegoLa JollaCaliforniaUSA
- Department of Marine SciencesUniversity of Puerto Rico MayagüezMayagüezPuerto Rico
| | - Michael A. Colella
- Fish & Wildlife Research Institute, Florida Fish & Wildlife Conservation CommissionSt. PetersburgFloridaUSA
| | | | - Robert R. Ruzicka
- Fish & Wildlife Research Institute, Florida Fish & Wildlife Conservation CommissionSt. PetersburgFloridaUSA
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8
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Randi CB, Becker AC, Willemes MJ, Perry CT, Salgado LT, Tomazetto de Carvalho R, Motta FS, Leão de Moura R, Coreixas de Moraes F, Pereira-Filho GH. Calcium carbonate production in the southernmost subtropical Atlantic coral reef. MARINE ENVIRONMENTAL RESEARCH 2021; 172:105490. [PMID: 34628146 DOI: 10.1016/j.marenvres.2021.105490] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/12/2021] [Revised: 09/17/2021] [Accepted: 09/26/2021] [Indexed: 06/13/2023]
Abstract
Emerging evidence have been supporting the idea that the better known South Atlantic coral reefs (located between 18°S and 24°S) are now essentially senescent structures that have experienced little or no additional vertical reef growth over the past millennia. This has often coincided with a shift to a dominance of non-coral calcifying organisms becoming the main CaCO3 producers in these high latitude and marginal marine settings. Here, we used Calcification Accretion Units (CAUs) and census-based methods to measure non-coral rates of CaCO3 production on the geologically senescent reef and adjacent rhodolith beds within the southernmost subtropical Atlantic reef (i.e., Queimada Grande Reef, QGR). The reef habitat is currently producing CaCO3 at rates of ∼126 g m-2 yr-1. In contrast, fragments of dead corals skeletons deposited adjacent to the reef over the last ∼2000 years are now colonized by crustose coralline red algae. These form a rhodolith bed that produces CaCO3 at rates of 858 g m-2 yr-1. Our results indicate that, whilst not sufficient to promote active net framework accumulation, CaCO3 production by coralline algae and bryozoans on the QGR appears to be sufficient to at least limit net large-scale erosion of the underlying reef structure, allowing the reef structure to persist in a state close to budgetary stasis. Finally, our results are also of relevance for providing insights regarding the balance of CaCO3 production/dissolution/erosion processes in coral reefs, especially in these less understood marginal reefs.
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Affiliation(s)
- Caroline B Randi
- Laboratório de Ecologia e Conservação Marinha, Instituto do Mar, Universidade Federal de São Paulo, Rua Dr. Carvalho de Mendonça 144, Santos, 110-070, Brazil
| | - Ana Clara Becker
- Laboratório de Ecologia e Conservação Marinha, Instituto do Mar, Universidade Federal de São Paulo, Rua Dr. Carvalho de Mendonça 144, Santos, 110-070, Brazil
| | - Maria Julia Willemes
- Instituto de Pesquisas Jardim Botânico do Rio de Janeiro, Rua Pacheco Leão 915, Rio de Janeiro, 22460-030, Brazil
| | - Chris T Perry
- Geography, College of Life and Environmental Sciences, University of Exeter, Exeter, UK
| | - Leonardo Tavares Salgado
- Instituto de Pesquisas Jardim Botânico do Rio de Janeiro, Rua Pacheco Leão 915, Rio de Janeiro, 22460-030, Brazil
| | | | - Fabio S Motta
- Laboratório de Ecologia e Conservação Marinha, Instituto do Mar, Universidade Federal de São Paulo, Rua Dr. Carvalho de Mendonça 144, Santos, 110-070, Brazil
| | - Rodrigo Leão de Moura
- Instituto de Biologia and SAGE-COPPE, Universidade Federal do Rio de Janeiro, Rio de Janeiro, Brazil
| | - Fernando Coreixas de Moraes
- Instituto de Pesquisas Jardim Botânico do Rio de Janeiro, Rua Pacheco Leão 915, Rio de Janeiro, 22460-030, Brazil; Departamento de Invertebrados, Museu Nacional, Universidade Federal do Rio de Janeiro, Rio de Janeiro, Brazil
| | - Guilherme H Pereira-Filho
- Laboratório de Ecologia e Conservação Marinha, Instituto do Mar, Universidade Federal de São Paulo, Rua Dr. Carvalho de Mendonça 144, Santos, 110-070, Brazil.
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9
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Toth LT, Precht WF, Modys AB, Stathakopoulos A, Robbart ML, Hudson JH, Oleinik AE, Riegl BM, Shinn EA, Aronson RB. Climate and the latitudinal limits of subtropical reef development. Sci Rep 2021; 11:13044. [PMID: 34158523 PMCID: PMC8219804 DOI: 10.1038/s41598-021-87883-8] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/09/2020] [Accepted: 04/06/2021] [Indexed: 11/09/2022] Open
Abstract
Climate plays a central role in coral-reef development, especially in marginal environments. The high-latitude reefs of southeast Florida are currently non-accreting, relict systems with low coral cover. This region also did not support the extensive Late Pleistocene reef development observed in many other locations around the world; however, there is evidence of significant reef building in southeast Florida during the Holocene. Using 146 radiometric ages from reefs extending ~ 120 km along Florida's southeast coast, we test the hypothesis that the latitudinal extent of Holocene reef development in this region was modulated by climatic variability. We demonstrate that although sea-level changes impacted rates of reef accretion and allowed reefs to backstep inshore as new habitats were flooded, sea level was not the ultimate cause of reef demise. Instead, we conclude that climate was the primary driver of the expansion and contraction of Florida's reefs during the Holocene. Reefs grew to 26.7° N in southeast Florida during the relatively warm, stable climate at the beginning of the Holocene Thermal Maximum (HTM) ~ 10,000 years ago, but subsequent cooling and increased frequency of winter cold fronts were associated with the equatorward contraction of reef building. By ~ 7800 years ago, actively accreting reefs only extended to 26.1° N. Reefs further contracted to 25.8° N after 5800 years ago, and by 3000 years ago reef development had terminated throughout southern Florida (24.5-26.7° N). Modern warming is unlikely to simply reverse this trend, however, because the climate of the Anthropocene will be fundamentally different from the HTM. By increasing the frequency and intensity of both warm and cold extreme-weather events, contemporary climate change will instead amplify conditions inimical to reef development in marginal reef environments such as southern Florida, making them more likely to continue to deteriorate than to resume accretion in the future.
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Affiliation(s)
- Lauren T Toth
- U.S. Geological Survey St. Petersburg Coastal and Marine Science Center, St. Petersburg, FL, USA.
| | - William F Precht
- Marine and Coastal Programs, Dial Cordy & Associates, Inc., Miami, FL, USA
| | - Alexander B Modys
- Department of Geosciences, Florida Atlantic University, Boca Raton, FL, USA
| | | | - Martha L Robbart
- Marine and Coastal Programs, Dial Cordy & Associates, Inc., Miami, FL, USA.,Independent Consultant, Glenmont, NY, USA
| | | | - Anton E Oleinik
- Department of Geosciences, Florida Atlantic University, Boca Raton, FL, USA
| | - Bernhard M Riegl
- Department of Marine and Environmental Sciences, Nova Southeastern University, Dania Beach, FL, USA
| | - Eugene A Shinn
- College of Marine Science, University of South Florida, St. Petersburg, FL, 33701, USA
| | - Richard B Aronson
- Department of Ocean Engineering and Marine Sciences, Florida Institute of Technology, Melbourne, FL, USA
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10
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Rippe JP, Dixon G, Fuller ZL, Liao Y, Matz M. Environmental specialization and cryptic genetic divergence in two massive coral species from the Florida Keys Reef Tract. Mol Ecol 2021; 30:3468-3484. [PMID: 33894013 DOI: 10.1111/mec.15931] [Citation(s) in RCA: 16] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/18/2020] [Revised: 03/22/2021] [Accepted: 04/14/2021] [Indexed: 01/02/2023]
Abstract
Broadcast-spawning coral species have wide geographical ranges spanning strong environmental gradients, but it is unclear how much spatially varying selection these gradients actually impose. Strong divergent selection might present a considerable barrier for demographic exchange between disparate reef habitats. We investigated whether the cross-shelf gradient is associated with spatially varying selection in two common coral species, Montastraea cavernosa and Siderastrea siderea, in the Florida Keys. To this end, we generated a de novo genome assembly for M. cavernosa and used 2bRAD to genotype 20 juveniles and 20 adults of both species from each of the three reef zones to identify signatures of selection occurring within a single generation. Unexpectedly, each species was found to be composed of four genetically distinct lineages, with gene flow between them still ongoing but highly reduced in 13.0%-54.7% of the genome. Each species includes two sympatric lineages that are only found in the deep (20 m) habitat, while the other lineages are found almost exclusively on the shallower reefs (3-10 m). The two "shallow" lineages of M. cavernosa are also specialized for either nearshore or offshore: comparison between adult and juvenile cohorts indicates that cross-shelf migrants are more than twice as likely to die before reaching adulthood than local recruits. S. siderea and M. cavernosa are among the most ecologically successful species on the Florida Keys Reef Tract, and this work offers important insight into the genomic background of divergent selection and environmental specialization that may in part explain their resilience and broad environmental range.
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Affiliation(s)
- John P Rippe
- Department of Integrative Biology, University of Texas at Austin, Austin, TX, USA
| | - Groves Dixon
- Department of Integrative Biology, University of Texas at Austin, Austin, TX, USA
| | - Zachary L Fuller
- Department of Biological Sciences, Columbia University, New York, NY, USA
| | - Yi Liao
- Department of Integrative Biology, University of Texas at Austin, Austin, TX, USA.,Department of Ecology and Evolutionary Biology, University of California Irvine, Irvine, CA, USA
| | - Mikhail Matz
- Department of Integrative Biology, University of Texas at Austin, Austin, TX, USA
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11
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González-Barrios FJ, Cabral-Tena RA, Alvarez-Filip L. Recovery disparity between coral cover and the physical functionality of reefs with impaired coral assemblages. GLOBAL CHANGE BIOLOGY 2021; 27:640-651. [PMID: 33131196 DOI: 10.1111/gcb.15431] [Citation(s) in RCA: 21] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/31/2020] [Revised: 10/22/2020] [Accepted: 10/25/2020] [Indexed: 06/11/2023]
Abstract
The ecology and structure of many tropical coral reefs have been markedly altered over the past few decades. Although long-term recovery has been observed in terms of coral cover, it is not clear how novel species configurations shape reef functionality in impaired reefs. The identities and life-history strategies of the corals species that recover are essential for understanding reef functional dynamics. We used a species identity approach to quantify the physical functionality outcomes over a 13 year period across 56 sites in the Mexican Caribbean. This region was affected by multiple stressors that converged and drastically damaged reefs in the early 2000s. Since then, the reefs have shown evidence of a modest recovery of coral cover. We used Bayesian linear models and annual rates of change to estimate temporal changes in physical functionality and coral cover. Moreover, a functional diversity framework was used to explore changes in coral composition and the traits of those assemblages. Between 2005 and 2018, physical functionality increased at a markedly lower rate compared to that of coral cover. The disparity between recovery rates depended on the identity of the species that increased (mainly non-framework and foliose-digitate corals). No changes in species dominance or functional trait composition were observed, whereas non-framework building corals consistently dominated most reefs. Although the observed recovery of coral cover and functional potential may provide some ecological benefits, the long-term effects on reef frameworks remain unclear, as changes in the cover of key reef-building species were not observed. Our findings are likely to be representative of many reefs across the wider Caribbean basin, as declines in coral cover and rapid increases in the relative abundance of weedy corals have been reported regionally. A coral identity approach to assess species turnover is needed to understand and quantify changes in the functionality of coral reefs.
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Affiliation(s)
- F Javier González-Barrios
- Biodiversity and Reef Conservation Laboratory, Unidad Académica de Sistemas Arrecifales, Instituto de Ciencias del Mar y Limnología, Universidad Nacional Autónoma de México, Puerto Morelos, México
- Department of Marine Ecology, Centro de Investigación Científica y de Educación Superior de Ensenada, Ensenada, México
| | - Rafael A Cabral-Tena
- Department of Marine Ecology, Centro de Investigación Científica y de Educación Superior de Ensenada, Ensenada, México
| | - Lorenzo Alvarez-Filip
- Biodiversity and Reef Conservation Laboratory, Unidad Académica de Sistemas Arrecifales, Instituto de Ciencias del Mar y Limnología, Universidad Nacional Autónoma de México, Puerto Morelos, México
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12
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Kuffner IB, Stathakopoulos A, Toth LT, Bartlett LA. Reestablishing a stepping-stone population of the threatened elkhorn coral Acropora palmata to aid regional recovery. ENDANGER SPECIES RES 2020. [DOI: 10.3354/esr01083] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022] Open
Abstract
Recovery of the elkhorn coral Acropora palmata is critical to reversing coral reef ecosystem collapse in the western Atlantic, but the species is severely threatened. To gauge potential for the species’ restoration in Florida, USA, we conducted an assisted migration experiment where 50 coral fragments of 5 nursery-raised genetic strains (genets) from the upper Florida Keys were moved to 5 sites across 350 km of the offshore reef. Additionally, 4 fragments from the 1 remaining colony of A. palmata in Dry Tortugas National Park (DRTO) were added to the 2 DRTO experimental sites to test for local adaptation. To measure coral performance, we tracked coral survival, calcification, growth, and condition from May 2018 to October 2019. All 24 corals relocated to the DRTO sites survived and calcified ~85% faster than the fewer surviving corals transplanted to the 2 upper Keys sites. While coral survival across the entire experiment did not depend on genet, there was a weak but statistically significant genetic effect on calcification rate among the corals relocated to DRTO. The DRTO native genet was among the fastest growing genets, but it was not the fastest, suggesting a lack of local adaptation at this scale. Our results indicate that DRTO, a remote reef system inhabited by the species during the Holocene and located at the nexus of major ocean currents, may be a prime location for reestablishing A. palmata. Assisted migration of A. palmata to DRTO could restore a sexually reproducing population in <10 yr, thereby promoting the species’ regional recovery.
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Affiliation(s)
- IB Kuffner
- US Geological Survey, St. Petersburg Coastal and Marine Science Center, St. Petersburg, Florida 33701, USA
| | - A Stathakopoulos
- US Geological Survey, St. Petersburg Coastal and Marine Science Center, St. Petersburg, Florida 33701, USA
| | - LT Toth
- US Geological Survey, St. Petersburg Coastal and Marine Science Center, St. Petersburg, Florida 33701, USA
| | - LA Bartlett
- Contracted by Cherokee Nation Technologies to US Geological Survey, St. Petersburg Coastal and Marine Science Center, St. Petersburg, Florida 33701, USA
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13
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Molina-Hernández A, González-Barrios FJ, Perry CT, Álvarez-Filip L. Two decades of carbonate budget change on shifted coral reef assemblages: are these reefs being locked into low net budget states? Proc Biol Sci 2020; 287:20202305. [PMID: 33290684 DOI: 10.1098/rspb.2020.2305] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/24/2023] Open
Abstract
The ecology of coral reefs is rapidly shifting from historical baselines. One key-question is whether under these new, less favourable ecological conditions, coral reefs will be able to sustain key geo-ecological processes such as the capacity to accumulate carbonate structure. Here, we use data from 34 Caribbean reef sites to examine how the carbonate production, net erosion and net carbonate budgets, as well as the organisms underlying these processes, have changed over the past 15 years in the absence of further severe acute disturbances. We find that despite fundamental benthic ecological changes, these ecologically shifted coral assemblages have exhibited a modest but significant increase in their net carbonate budgets over the past 15 years. However, contrary to expectations this trend was driven by a decrease in erosion pressure, largely resulting from changes in the abundance and size-frequency distribution of parrotfishes, and not by an increase in rates of coral carbonate production. Although in the short term, the carbonate budgets seem to have benefitted marginally from reduced parrotfish erosion, the absence of these key substrate grazers, particularly of larger individuals, is unlikely to be conducive to reef recovery and will thus probably lock these reefs into low budget states.
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Affiliation(s)
- Ana Molina-Hernández
- Posgrado en Ciencias del Mar y Limnología, Universidad Nacional Autónoma de México, Av. Ciudad Universitaria 3000, C.P. 04510, Coyoacán, Ciudad de México, México.,Biodiversity and Reef Conservation Laboratory, Unidad Académica de Sistemas Arrecifales, Instituto de Ciencias del Mar y Limnología, Universidad Nacional Autónoma de México, Puerto Morelos, Quintana Roo, México
| | - F Javier González-Barrios
- Biodiversity and Reef Conservation Laboratory, Unidad Académica de Sistemas Arrecifales, Instituto de Ciencias del Mar y Limnología, Universidad Nacional Autónoma de México, Puerto Morelos, Quintana Roo, México
| | - Chris T Perry
- Geography, College of Life and Environmental Sciences, University of Exeter, Exeter, UK
| | - Lorenzo Álvarez-Filip
- Biodiversity and Reef Conservation Laboratory, Unidad Académica de Sistemas Arrecifales, Instituto de Ciencias del Mar y Limnología, Universidad Nacional Autónoma de México, Puerto Morelos, Quintana Roo, México
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14
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Woesik R, Banister RB, Bartels E, Gilliam DS, Goergen EA, Lustic C, Maxwell K, Moura A, Muller EM, Schopmeyer S, Winters RS, Lirman D. Differential survival of nursery‐reared
Acropora cervicornis
outplants along the Florida reef tract. Restor Ecol 2020. [DOI: 10.1111/rec.13302] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]
Affiliation(s)
- Robert Woesik
- Institute for Global Ecology Florida Institute of Technology Melbourne FL 32901 U.S.A
| | - Raymond B. Banister
- Institute for Global Ecology Florida Institute of Technology Melbourne FL 32901 U.S.A
| | - Erich Bartels
- Center for Tropical Research, Mote Marine Laboratory Summerland Key FL 33042 U.S.A
| | - David S. Gilliam
- Oceanographic Center Nova Southeastern University 8000 North Ocean Drive Dania Beach FL 33004 U.S.A
| | | | | | - Kerry Maxwell
- Florida Fish and Wildlife Research Institute, Fish and Wildlife Conservation Commission 2796 Overseas Highway, Suite 119 Marathon FL 33050 U.S.A
| | - Amelia Moura
- Coral Restoration Foundation Tavernier FL 33070 U.S.A
| | - Erinn M. Muller
- Center for Tropical Research, Mote Marine Laboratory Summerland Key FL 33042 U.S.A
| | - Stephanie Schopmeyer
- Florida Fish and Wildlife Research Institute, Fish and Wildlife Conservation Commission St Petersburg FL 33701 U.S.A
| | - R. S. Winters
- Coral Restoration Foundation Tavernier FL 33070 U.S.A
| | - Diego Lirman
- Marine Biology and Ecology Department, Rosenstiel School of Marine and Atmospheric Science University of Miami Miami FL 33149 U.S.A
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15
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Gravinese PM, Page HN, Butler CB, Spadaro AJ, Hewett C, Considine M, Lankes D, Fisher S. Ocean acidification disrupts the orientation of postlarval Caribbean spiny lobsters. Sci Rep 2020; 10:18092. [PMID: 33093550 PMCID: PMC7581715 DOI: 10.1038/s41598-020-75021-9] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/22/2020] [Accepted: 10/06/2020] [Indexed: 11/16/2022] Open
Abstract
Anthropogenic inputs into coastal ecosystems are causing more frequent environmental fluctuations and reducing seawater pH. One such ecosystem is Florida Bay, an important nursery for the Caribbean spiny lobster, Panulirus argus. Although adult crustaceans are often resilient to reduced seawater pH, earlier ontogenetic stages can be physiologically limited in their tolerance to ocean acidification on shorter time scales. We used a Y-maze chamber to test whether reduced-pH seawater altered the orientation of spiny lobster pueruli toward chemical cues produced by Laurencia spp. macroalgae, a known settlement cue for the species. We tested the hypothesis that pueruli conditioned in reduced-pH seawater would be less responsive to Laurencia spp. chemical cues than pueruli in ambient-pH seawater by comparing the proportion of individuals that moved to the cue side of the chamber with the proportion that moved to the side with no cue. We also recorded the amount of time (sec) before a response was observed. Pueruli conditioned in reduced-pH seawater were less responsive and failed to select the Laurencia cue. Our results suggest that episodic acidification of coastal waters might limit the ability of pueruli to locate settlement habitats, increasing postsettlement mortality.
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Affiliation(s)
- Philip M Gravinese
- Mote Marine Laboratory and Aquarium, Fisheries Ecology and Enhancement Program, Sarasota, FL, 34236, USA. .,Department of Biological Sciences, Florida Southern College, Lakeland, FL, 33801, USA.
| | - Heather N Page
- Mote Marine Laboratory and Aquarium, Elizabeth Moore International Center for Coral Reef Research and Restoration, Summerland Key, FL, 33042, USA.,Sea Education Association, Woods Hole, MA, 02543, USA
| | - Casey B Butler
- Fish and Wildlife Research Institute, Florida Fish and Wildlife Conservation Commission, Marathon, FL, 33050, USA
| | - Angelo Jason Spadaro
- Fish and Wildlife Research Institute, Florida Fish and Wildlife Conservation Commission, Marathon, FL, 33050, USA.,Department of Marine Science and Technology, The College of the Florida Keys, Key West, FL, 33042, USA
| | - Clay Hewett
- Mote Marine Laboratory and Aquarium, Elizabeth Moore International Center for Coral Reef Research and Restoration, Summerland Key, FL, 33042, USA
| | - Megan Considine
- Mote Marine Laboratory and Aquarium, Elizabeth Moore International Center for Coral Reef Research and Restoration, Summerland Key, FL, 33042, USA
| | - David Lankes
- Mote Marine Laboratory and Aquarium, Elizabeth Moore International Center for Coral Reef Research and Restoration, Summerland Key, FL, 33042, USA
| | - Samantha Fisher
- Mote Marine Laboratory and Aquarium, Fisheries Ecology and Enhancement Program, Sarasota, FL, 34236, USA
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16
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Courtney TA, Barnes BB, Chollett I, Elahi R, Gross K, Guest JR, Kuffner IB, Lenz EA, Nelson HR, Rogers CS, Toth LT, Andersson AJ. Disturbances drive changes in coral community assemblages and coral calcification capacity. Ecosphere 2020. [DOI: 10.1002/ecs2.3066] [Citation(s) in RCA: 13] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022] Open
Affiliation(s)
- Travis A. Courtney
- Scripps Institution of Oceanography University of California San Diego La Jolla California 92093 USA
| | - Brian B. Barnes
- College of Marine Science University of South Florida St. Petersburg Florida 33701 USA
| | | | - Robin Elahi
- Hopkins Marine Station Stanford University Pacific Grove California 93950 USA
| | - Kevin Gross
- Department of Statistics North Carolina State University Raleigh North Carolina 27695 USA
| | - James R. Guest
- School of Natural and Environmental Sciences Newcastle University Newcastle upon Tyne NE17RU UK
| | - Ilsa B. Kuffner
- U.S. Geological Survey, St. Petersburg Coastal and Marine Science Center St. Petersburg Florida 33701 USA
| | - Elizabeth A. Lenz
- Hawai'i Institute of Marine Biology University of Hawai'i Kāne'ohe Hawai'i 96744 USA
| | - Hannah R. Nelson
- Department of Biology California State University Northridge California 91330 USA
| | - Caroline S. Rogers
- U.S. Geological Survey, Wetland and Aquatic Research Center St John U.S. Virgin Islands USA
| | - Lauren T. Toth
- U.S. Geological Survey, St. Petersburg Coastal and Marine Science Center St. Petersburg Florida 33701 USA
| | - Andreas J. Andersson
- Scripps Institution of Oceanography University of California San Diego La Jolla California 92093 USA
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17
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Abstract
Over the last three decades corals have declined precipitously in the Florida Keys. Their population decline has prompted restoration effort. Yet, little effort has been invested in understanding the contemporary niche spaces of coral species, which could assist in prioritizing conservation habitats. We sought to predict the probability of occurrence of 23 coral species, including the critically endangered Acropora cervicornis, using observations at 985 sites from 2011–2015. We ran boosted regression trees to evaluate the relationship between the presence of these corals and eight potential environmental predictors: (i) bathymetry (m), (ii) mean of daily sea surface temperature (SST) (°C), (iii) variance of SST (°C), (iv) range of SST (°C), (v) chlorophyll-a concentration (mg m3), (vi) turbidity (m-1), (vii) wave energy (kJ m-2), and (viii) distance from coast (km). The Marquesas and the lower and upper Florida Keys were predicted to support the most suitable habitats for the 23 coral species examined. A. cervicornis had one of the smallest areas of suitable habitat, which was limited to the lower and upper Florida Keys, the Dry Tortugas, and nearshore Broward-Miami reefs. The best environmental predictors of site occupancy of A. cervicornis were SST range (4–5°C) and turbidity (K490 between 0.15–0.25 m-1). Historically A. cervicornis was reported in clear oligotrophic waters, although the present results find the coral species surviving in nearshore turbid conditions. Nearshore, turbid reefs may shade corals during high-temperature events, and therefore nearshore reefs in south Florida may become important refuges for corals as the ocean temperatures continue to increase.
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18
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Hamill PG, Stevenson A, McMullan PE, Williams JP, Lewis ADR, S S, Stevenson KE, Farnsworth KD, Khroustalyova G, Takemoto JY, Quinn JP, Rapoport A, Hallsworth JE. Microbial lag phase can be indicative of, or independent from, cellular stress. Sci Rep 2020; 10:5948. [PMID: 32246056 PMCID: PMC7125082 DOI: 10.1038/s41598-020-62552-4] [Citation(s) in RCA: 38] [Impact Index Per Article: 9.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/22/2019] [Accepted: 03/16/2020] [Indexed: 01/01/2023] Open
Abstract
Measures of microbial growth, used as indicators of cellular stress, are sometimes quantified at a single time-point. In reality, these measurements are compound representations of length of lag, exponential growth-rate, and other factors. Here, we investigate whether length of lag phase can act as a proxy for stress, using a number of model systems (Aspergillus penicillioides; Bacillus subtilis; Escherichia coli; Eurotium amstelodami, E. echinulatum, E. halophilicum, and E. repens; Mrakia frigida; Saccharomyces cerevisiae; Xerochrysium xerophilum; Xeromyces bisporus) exposed to mechanistically distinct types of cellular stress including low water activity, other solute-induced stresses, and dehydration-rehydration cycles. Lag phase was neither proportional to germination rate for X. bisporus (FRR3443) in glycerol-supplemented media (r2 = 0.012), nor to exponential growth-rates for other microbes. In some cases, growth-rates varied greatly with stressor concentration even when lag remained constant. By contrast, there were strong correlations for B. subtilis in media supplemented with polyethylene-glycol 6000 or 600 (r2 = 0.925 and 0.961), and for other microbial species. We also analysed data from independent studies of food-spoilage fungi under glycerol stress (Aspergillus aculeatinus and A. sclerotiicarbonarius); mesophilic/psychrotolerant bacteria under diverse, solute-induced stresses (Brochothrix thermosphacta, Enterococcus faecalis, Pseudomonas fluorescens, Salmonella typhimurium, Staphylococcus aureus); and fungal enzymes under acid-stress (Terfezia claveryi lipoxygenase and Agaricus bisporus tyrosinase). These datasets also exhibited diversity, with some strong- and moderate correlations between length of lag and exponential growth-rates; and sometimes none. In conclusion, lag phase is not a reliable measure of stress because length of lag and growth-rate inhibition are sometimes highly correlated, and sometimes not at all.
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Affiliation(s)
- Philip G Hamill
- Institute for Global Food Security, School of Biological Sciences, Queen's University Belfast, 19 Chlorine Gardens, Belfast, BT9 5DL, Northern Ireland
| | - Andrew Stevenson
- Institute for Global Food Security, School of Biological Sciences, Queen's University Belfast, 19 Chlorine Gardens, Belfast, BT9 5DL, Northern Ireland
| | - Phillip E McMullan
- Institute for Global Food Security, School of Biological Sciences, Queen's University Belfast, 19 Chlorine Gardens, Belfast, BT9 5DL, Northern Ireland
| | - James P Williams
- Institute for Global Food Security, School of Biological Sciences, Queen's University Belfast, 19 Chlorine Gardens, Belfast, BT9 5DL, Northern Ireland
| | - Abiann D R Lewis
- Institute for Global Food Security, School of Biological Sciences, Queen's University Belfast, 19 Chlorine Gardens, Belfast, BT9 5DL, Northern Ireland
| | - Sudharsan S
- Department of Chemistry, PGP College of Arts and Science, NH-7, Karur Main Road, Paramathi, Namakkal, Tamil Nadu, 637 207, India
| | - Kath E Stevenson
- Special Collections and Archives, McClay Library, Queen's University Belfast, 10 College Park Avenue, Belfast, BT7 1LP, Northern Ireland
| | - Keith D Farnsworth
- Institute for Global Food Security, School of Biological Sciences, Queen's University Belfast, 19 Chlorine Gardens, Belfast, BT9 5DL, Northern Ireland
| | - Galina Khroustalyova
- Laboratory of Cell Biology, Institute of Microbiology and Biotechnology, University of Latvia, Jelgavas Str., 1-537, LV-1004, Riga, Latvia
| | - Jon Y Takemoto
- Utah State University, Department of Biology, 5305 Old Main Hill, Logan, UT, 84322, USA
| | - John P Quinn
- Institute for Global Food Security, School of Biological Sciences, Queen's University Belfast, 19 Chlorine Gardens, Belfast, BT9 5DL, Northern Ireland
| | - Alexander Rapoport
- Laboratory of Cell Biology, Institute of Microbiology and Biotechnology, University of Latvia, Jelgavas Str., 1-537, LV-1004, Riga, Latvia
| | - John E Hallsworth
- Institute for Global Food Security, School of Biological Sciences, Queen's University Belfast, 19 Chlorine Gardens, Belfast, BT9 5DL, Northern Ireland.
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19
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Stathakopoulos A, Riegl BM, Toth LT. A revised Holocene coral sea-level database from the Florida reef tract, USA. PeerJ 2020; 8:e8350. [PMID: 31998555 PMCID: PMC6977503 DOI: 10.7717/peerj.8350] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/13/2018] [Accepted: 12/04/2019] [Indexed: 12/27/2022] Open
Abstract
The coral reefs and mangrove habitats of the south Florida region have long been used in sea-level studies for the western Atlantic because of their broad geographic extent and composition of sea-level tracking biota. The data from this region have been used to support several very different Holocene sea-level reconstructions (SLRs) over the years. However, many of these SLRs did not incorporate all available coral-based data, in part because detailed characterizations necessary for inclusion into sea-level databases were lacking. Here, we present an updated database comprised of 303 coral samples from published sources that we extensively characterized for the first time. The data were carefully screened by evaluating and ranking the visual taphonomic characteristics of every dated sample within the database, which resulted in the identification of 134 high-quality coral samples for consideration as suitable sea-level indicators. We show that our database largely agrees with the most recent SLR for south Florida over the last ∼7,000 years; however, the early Holocene remains poorly characterized because there are few high-quality data spanning this period. Suggestions to refine future Holocene SLRs in the region are provided including filling spatial and temporal data gaps of coral samples, particularly from the early Holocene, as well as constructing a more robust peat database to better constrain sea-level variability during the middle to late Holocene. Our database and taphonomic-ranking protocol provide a framework for researchers to evaluate data-selection criteria depending on the robustness of their sea-level models.
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Affiliation(s)
- Anastasios Stathakopoulos
- Halmos College of Natural Sciences and Oceanography, Guy Harvey Oceanographic Center, Nova Southeastern University, Dania, FL, United States of America
- St. Petersburg Coastal and Marine Science Center, U.S. Geological Survey, St. Petersburg, FL, United States of America
| | - Bernhard M. Riegl
- Halmos College of Natural Sciences and Oceanography, Guy Harvey Oceanographic Center, Nova Southeastern University, Dania, FL, United States of America
| | - Lauren T. Toth
- St. Petersburg Coastal and Marine Science Center, U.S. Geological Survey, St. Petersburg, FL, United States of America
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20
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Walker TWN, Janssens IA, Weedon JT, Sigurdsson BD, Richter A, Peñuelas J, Leblans NIW, Bahn M, Bartrons M, De Jonge C, Fuchslueger L, Gargallo-Garriga A, Gunnarsdóttir GE, Marañón-Jiménez S, Oddsdóttir ES, Ostonen I, Poeplau C, Prommer J, Radujković D, Sardans J, Sigurðsson P, Soong JL, Vicca S, Wallander H, Ilieva-Makulec K, Verbruggen E. A systemic overreaction to years versus decades of warming in a subarctic grassland ecosystem. Nat Ecol Evol 2019; 4:101-108. [PMID: 31819236 PMCID: PMC6942924 DOI: 10.1038/s41559-019-1055-3] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/27/2019] [Accepted: 11/01/2019] [Indexed: 02/04/2023]
Abstract
Temperature governs most biotic processes, yet we know little about how warming affects whole ecosystems. Here we examined the responses of 128 components of a subarctic grassland to 5-8 or >50 years of soil warming. Warming of >50 years drove the ecosystem to a new steady state possessing a distinct biotic composition and reduced species richness, biomass and soil organic matter. However, the warmed state was preceded by an overreaction to warming, which was related to organisms’ physiologies and was evident after 5-8 years. Ignoring this overreaction yielded errors of more than 100% for 83 variables when predicting their responses to a realistic warming scenario of 1 ºC over 50 years, although some, including soil carbon content, remained stable after 5-8 years. This study challenges long-term ecosystem predictions made from short-term observations, and provides a framework for characterising ecosystem responses to sustained climate change.
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Affiliation(s)
- Tom W N Walker
- Institute for Integrative Biology, ETH Zürich, Zürich, Switzerland. .,Department of Ecology & Evolution, Université de Lausanne, Lausanne, Switzerland.
| | - Ivan A Janssens
- Department of Biology, University of Antwerp, Wilrijk, Belgium
| | - James T Weedon
- Department of Ecological Sciences, Vrije Universiteit Amsterdam, Amsterdam, the Netherlands
| | | | - Andreas Richter
- Department of Microbiology & Ecosystem Science, Division of Terrestrial Ecosystem Research, University of Vienna, Vienna, Austria.,International Institute for Applied Systems Analysis, Ecosystems Services and Management Program, Laxenberg, Austria
| | - Josep Peñuelas
- CSIC, Global Ecology Unit CREAF-CSIC-UAB, Bellaterra, Spain.,CREAF, Cerdanyola del Vallès, Spain
| | - Niki I W Leblans
- Department of Biology, University of Antwerp, Wilrijk, Belgium.,Agricultural University of Iceland, Borgarnes, Iceland
| | - Michael Bahn
- Department of Ecology, University of Innsbruck, Innsbruck, Austria
| | - Mireia Bartrons
- CSIC, Global Ecology Unit CREAF-CSIC-UAB, Bellaterra, Spain.,Aquatic Ecology Group, University of Vic-Central University of Catalonia, Vic, Spain
| | - Cindy De Jonge
- Department of Biology, University of Antwerp, Wilrijk, Belgium
| | - Lucia Fuchslueger
- Department of Biology, University of Antwerp, Wilrijk, Belgium.,Department of Microbiology & Ecosystem Science, Division of Terrestrial Ecosystem Research, University of Vienna, Vienna, Austria
| | - Albert Gargallo-Garriga
- CSIC, Global Ecology Unit CREAF-CSIC-UAB, Bellaterra, Spain.,CREAF, Cerdanyola del Vallès, Spain.,Global Change Research Institute, Brno, Czech Republic
| | - Gunnhildur E Gunnarsdóttir
- Agricultural University of Iceland, Borgarnes, Iceland.,Soil Conservation Service of Iceland, Gunnarsholti, Hella, Iceland
| | - Sara Marañón-Jiménez
- Department of Biology, University of Antwerp, Wilrijk, Belgium.,CSIC, Global Ecology Unit CREAF-CSIC-UAB, Bellaterra, Spain.,CREAF, Cerdanyola del Vallès, Spain
| | | | - Ivika Ostonen
- Institute of Ecology and Earth Sciences, University of Tartu, Tartu, Estonia
| | | | - Judith Prommer
- Department of Microbiology & Ecosystem Science, Division of Terrestrial Ecosystem Research, University of Vienna, Vienna, Austria
| | | | - Jordi Sardans
- CSIC, Global Ecology Unit CREAF-CSIC-UAB, Bellaterra, Spain.,CREAF, Cerdanyola del Vallès, Spain
| | | | - Jennifer L Soong
- Department of Biology, University of Antwerp, Wilrijk, Belgium.,Climate and Ecosystem Science Division, Lawrence Berkeley National Laboratory, Berkeley, CA, USA
| | - Sara Vicca
- Department of Biology, University of Antwerp, Wilrijk, Belgium
| | | | | | - Erik Verbruggen
- Department of Biology, University of Antwerp, Wilrijk, Belgium
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21
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Baums IB, Baker AC, Davies SW, Grottoli AG, Kenkel CD, Kitchen SA, Kuffner IB, LaJeunesse TC, Matz MV, Miller MW, Parkinson JE, Shantz AA. Considerations for maximizing the adaptive potential of restored coral populations in the western Atlantic. ECOLOGICAL APPLICATIONS : A PUBLICATION OF THE ECOLOGICAL SOCIETY OF AMERICA 2019; 29:e01978. [PMID: 31332879 PMCID: PMC6916196 DOI: 10.1002/eap.1978] [Citation(s) in RCA: 65] [Impact Index Per Article: 13.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/25/2019] [Revised: 06/13/2019] [Accepted: 06/21/2019] [Indexed: 05/06/2023]
Abstract
Active coral restoration typically involves two interventions: crossing gametes to facilitate sexual larval propagation; and fragmenting, growing, and outplanting adult colonies to enhance asexual propagation. From an evolutionary perspective, the goal of these efforts is to establish self-sustaining, sexually reproducing coral populations that have sufficient genetic and phenotypic variation to adapt to changing environments. Here, we provide concrete guidelines to help restoration practitioners meet this goal for most Caribbean species of interest. To enable the persistence of coral populations exposed to severe selection pressure from many stressors, a mixed provenance strategy is suggested: genetically unique colonies (genets) should be sourced both locally as well as from more distant, environmentally distinct sites. Sourcing three to four genets per reef along environmental gradients should be sufficient to capture a majority of intraspecies genetic diversity. It is best for practitioners to propagate genets with one or more phenotypic traits that are predicted to be valuable in the future, such as low partial mortality, high wound healing rate, high skeletal growth rate, bleaching resilience, infectious disease resilience, and high sexual reproductive output. Some effort should also be reserved for underperforming genets because colonies that grow poorly in nurseries sometimes thrive once returned to the reef and may harbor genetic variants with as yet unrecognized value. Outplants should be clustered in groups of four to six genets to enable successful fertilization upon maturation. Current evidence indicates that translocating genets among distant reefs is unlikely to be problematic from a population genetic perspective but will likely provide substantial adaptive benefits. Similarly, inbreeding depression is not a concern given that current practices only raise first-generation offspring. Thus, proceeding with the proposed management strategies even in the absence of a detailed population genetic analysis of the focal species at sites targeted for restoration is the best course of action. These basic guidelines should help maximize the adaptive potential of reef-building corals facing a rapidly changing environment.
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Affiliation(s)
- Iliana B. Baums
- Department of BiologyPennsylvania State UniversityUniversity ParkPennsylvania16803USA
| | - Andrew C. Baker
- Department of Marine Biology and EcologyRosenstiel School of Marine and Atmospheric ScienceUniversity of MiamiMiamiFlorida33149USA
| | - Sarah W. Davies
- Department of BiologyBoston UniversityBostonMassachusetts02215USA
| | | | - Carly D. Kenkel
- Department of Biological SciencesUniversity of Southern CaliforniaLos AngelesCalifornia90007USA
| | - Sheila A. Kitchen
- Department of BiologyPennsylvania State UniversityUniversity ParkPennsylvania16803USA
| | - Ilsa B. Kuffner
- U.S. Geological Survey600 4th Street S.St. PetersburgFlorida33701USA
| | - Todd C. LaJeunesse
- Department of BiologyPennsylvania State UniversityUniversity ParkPennsylvania16803USA
| | - Mikhail V. Matz
- Department of Integrative BiologyThe University of Texas at AustinAustinTexas78712USA
| | | | - John E. Parkinson
- SECORE InternationalMiamiFlorida33145USA
- Department of Integrative BiologyUniversity of South FloridaTampaFlorida33620USA
| | - Andrew A. Shantz
- Department of BiologyPennsylvania State UniversityUniversity ParkPennsylvania16803USA
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22
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Estrada-Saldívar N, Jordán-Dalhgren E, Rodríguez-Martínez RE, Perry C, Alvarez-Filip L. Functional consequences of the long-term decline of reef-building corals in the Caribbean: evidence of across-reef functional convergence. ROYAL SOCIETY OPEN SCIENCE 2019; 6:190298. [PMID: 31824686 PMCID: PMC6837220 DOI: 10.1098/rsos.190298] [Citation(s) in RCA: 23] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/18/2019] [Accepted: 09/23/2019] [Indexed: 05/22/2023]
Abstract
Functional integrity on coral reefs is strongly dependent upon coral cover and coral carbonate production rate being sufficient to maintain three-dimensional reef structures. Increasing environmental and anthropogenic pressures in recent decades have reduced the cover of key reef-building species, producing a shift towards the relative dominance of more stress-tolerant taxa and leading to a reduction in the physical functional integrity. Understanding how changes in coral community composition influence the potential of reefs to maintain their physical reef functioning is a priority for their conservation and management. Here, we evaluate how coral communities have changed in the northern sector of the Mexican Caribbean between 1985 and 2016, and the implications for the maintenance of physical reef functions in the back- and fore-reef zones. We used the cover of coral species to explore changes in four morpho-functional groups, coral community composition, coral community calcification, the reef functional index and the reef carbonate budget. Over a period of 31 years, ecological homogenization occurred between the two reef zones mostly due to a reduction in the cover of framework-building branching (Acropora spp.) and foliose-digitiform (Porites porites and Agaricia tenuifolia) coral species in the back-reef, and a relative increase in non-framework species in the fore-reef (Agaricia agaricites and Porites astreoides). This resulted in a significant decrease in the physical functionality of the back-reef zone. At present, both reef zones have negative carbonate budgets, and thus limited capacity to sustain reef accretion, compromising the existing reef structure and its future capacity to provide habitat and environmental services.
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Affiliation(s)
- Nuria Estrada-Saldívar
- Biodiversity and Reef Conservation Laboratory, Unidad Académica de Sistemas Arrecifales, Instituto de Ciencias del Mar y Limnología, Universidad Nacional Autónoma de México, Puerto Morelos, Quintana Roo, México
- Posgrado en Ciencias del Mar y Limnología, Universidad Nacional Autónoma de México, Avenida Ciudad Universitaria 3000, CP 04510 Coyoacán, Ciudad de México, México
| | - Eric Jordán-Dalhgren
- Coral Ecology Laboratory, Unidad Académica de Sistemas Arrecifales, Instituto de Ciencias del Mar y Limnología, Universidad Nacional Autónoma de México, Puerto Morelos, Quintana Roo, México
| | - Rosa E. Rodríguez-Martínez
- Coral Ecology Laboratory, Unidad Académica de Sistemas Arrecifales, Instituto de Ciencias del Mar y Limnología, Universidad Nacional Autónoma de México, Puerto Morelos, Quintana Roo, México
| | - Chris Perry
- Geography, College of Life and Environmental Sciences, University of Exeter, Exeter EX4 4RJ, UK
| | - Lorenzo Alvarez-Filip
- Biodiversity and Reef Conservation Laboratory, Unidad Académica de Sistemas Arrecifales, Instituto de Ciencias del Mar y Limnología, Universidad Nacional Autónoma de México, Puerto Morelos, Quintana Roo, México
- Author for correspondence: Lorenzo Alvarez-Filip e-mail:
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23
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Toth LT, Stathakopoulos A, Kuffner IB, Ruzicka RR, Colella MA, Shinn EA. The unprecedented loss of Florida's reef-building corals and the emergence of a novel coral-reef assemblage. Ecology 2019; 100:e02781. [PMID: 31170313 PMCID: PMC6851685 DOI: 10.1002/ecy.2781] [Citation(s) in RCA: 38] [Impact Index Per Article: 7.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 12/28/2018] [Revised: 05/01/2019] [Accepted: 05/20/2019] [Indexed: 12/17/2022]
Abstract
Over the last half century, climate change, coral disease, and other anthropogenic disturbances have restructured coral‐reef ecosystems on a global scale. The disproportionate loss of once‐dominant, reef‐building taxa has facilitated relative increases in the abundance of “weedy” or stress‐tolerant coral species. Although the recent transformation of coral‐reef assemblages is unprecedented on ecological timescales, determining whether modern coral reefs have truly reached a novel ecosystem state requires evaluating the dynamics of reef composition over much longer periods of time. Here, we provide a geologic perspective on the shifting composition of Florida's reefs by reconstructing the millennial‐scale spatial and temporal variability in reef assemblages using 59 Holocene reef cores collected throughout the Florida Keys Reef Tract (FKRT). We then compare the relative abundances of reef‐building species in the Holocene reef framework to data from contemporary reef surveys to determine how much Florida's modern reef assemblages have diverged from long‐term baselines. We show that the composition of Florida's reefs was, until recently, remarkably stable over the last 8000 yr. The same corals that have dominated shallow‐water reefs throughout the western Atlantic for hundreds of thousands of years, Acropora palmata, Orbicella spp., and other massive coral taxa, accounted for nearly 90% of Florida's Holocene reef framework. In contrast, the species that now have the highest relative abundances on the FKRT, primarily Porites astreoides and Siderastrea siderea, were rare in the reef framework, suggesting that recent shifts in species assemblages are unprecedented over millennial timescales. Although it may not be possible to return coral reefs to pre‐Anthropocene states, our results suggest that coral‐reef management focused on the conservation and restoration of the reef‐building species of the past, will optimize efforts to preserve coral reefs, and the valuable ecosystem services they provide into the future.
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Affiliation(s)
- L T Toth
- St. Petersburg Coastal & Marine Science Center, U.S. Geological Survey, St. Petersburg, Florida, 33701, USA
| | - A Stathakopoulos
- St. Petersburg Coastal & Marine Science Center, U.S. Geological Survey, St. Petersburg, Florida, 33701, USA
| | - I B Kuffner
- St. Petersburg Coastal & Marine Science Center, U.S. Geological Survey, St. Petersburg, Florida, 33701, USA
| | - R R Ruzicka
- Florida Fish and Wildlife Conservation Commission, Fish and Wildlife Research Institute, St. Petersburg, Florida, 33701, USA
| | - M A Colella
- Florida Fish and Wildlife Conservation Commission, Fish and Wildlife Research Institute, St. Petersburg, Florida, 33701, USA
| | - E A Shinn
- College of Marine Science, University of South Florida, St. Petersburg, Florida, 33701, USA
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24
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Zhang Y, Chen Q, Xie JY, Yeung YH, Xiao B, Liao B, Xu J, Qiu JW. Development of a transcriptomic database for 14 species of scleractinian corals. BMC Genomics 2019; 20:387. [PMID: 31101011 PMCID: PMC6525400 DOI: 10.1186/s12864-019-5744-8] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/19/2019] [Accepted: 04/29/2019] [Indexed: 12/11/2022] Open
Abstract
BACKGROUND Scleractinian corals are important reef builders, but around the world they are under the threat of global climate change as well as local stressors. Molecular resources are critical for understanding a species' stress responses and resilience to the changing environment, but such resources are unavailable for most scleractinian corals, especially those distributed in the South China Sea. We therefore aimed to provide transcriptome resources for 14 common species, including a few structure forming species, in the South China Sea. DESCRIPTION We sequenced the transcriptome of 14 species of scleractinian corals using high-throughput RNA-seq and conducted de novo assembly. For each species, we produced 7.4 to 12.0 gigabases of reads, and assembled them into 271 to 762 thousand contigs with a N50 value of 629 to 1427 bp. These contigs included 66 to 114 thousand unigenes with a predicted open reading frame, and 74.3 to 80.5% of the unigenes were functionally annotated. In the azooxanthelate species Tubastraea coccinea, 41.5% of the unigenes had at least a best-hit sequence from corals. In the other thirteen species, 20.2 to 48.9% of the annotated unigenes had best-hit sequences from corals, and 28.3 to 51.6% from symbiotic algae belonging to the family Symbiodinaceae. With these resources, we developed a transcriptome database (CoralTBase) which features online BLAST and keyword search for unigenes/functional terms through a user friendly Internet interface. SHORT CONCLUSION We developed comprehensive transcriptome resources for 14 species of scleractinian corals and constructed a publicly accessible database ( www.comp.hkbu.edu.hk/~db/CoralTBase ). CoralTBase will facilitate not only functional studies using these corals to understand the molecular basis of stress responses and adaptation, but also comparative transcriptomic studies with other species of corals and more distantly related cnidarians.
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Affiliation(s)
- Yanjie Zhang
- HKBU Institute of Research and Continuing Education, Virtual University Park, Gaoxin South 4th Road, Shenzhen, 518057, China.,Department of Biology, Hong Kong Baptist University, Hong Kong, China
| | - Qian Chen
- Department of Computer Science, Hong Kong Baptist University, Hong Kong, China.,Present address: Google China, Beijing, China
| | - James Y Xie
- Department of Biology, Hong Kong Baptist University, Hong Kong, China
| | - Yip Hung Yeung
- Department of Biology, Hong Kong Baptist University, Hong Kong, China
| | - Baohua Xiao
- Shenzhen Institute of Guangdong Ocean University, Shenzhen, China
| | - Baoling Liao
- Shenzhen Institute of Guangdong Ocean University, Shenzhen, China
| | - Jianliang Xu
- Department of Computer Science, Hong Kong Baptist University, Hong Kong, China.
| | - Jian-Wen Qiu
- HKBU Institute of Research and Continuing Education, Virtual University Park, Gaoxin South 4th Road, Shenzhen, 518057, China. .,Department of Biology, Hong Kong Baptist University, Hong Kong, China.
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25
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Bruno JF, Côté IM, Toth LT. Climate Change, Coral Loss, and the Curious Case of the Parrotfish Paradigm: Why Don't Marine Protected Areas Improve Reef Resilience? ANNUAL REVIEW OF MARINE SCIENCE 2019; 11:307-334. [PMID: 30606097 DOI: 10.1146/annurev-marine-010318-095300] [Citation(s) in RCA: 105] [Impact Index Per Article: 21.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/06/2023]
Abstract
Scientists have advocated for local interventions, such as creating marine protected areas and implementing fishery restrictions, as ways to mitigate local stressors to limit the effects of climate change on reef-building corals. However, in a literature review, we find little empirical support for the notion of managed resilience. We outline some reasons for why marine protected areas and the protection of herbivorous fish (especially parrotfish) have had little effect on coral resilience. One key explanation is that the impacts of local stressors (e.g., pollution and fishing) are often swamped by the much greater effect of ocean warming on corals. Another is the sheer complexity (including numerous context dependencies) of the five cascading links assumed by the managed-resilience hypothesis. If reefs cannot be saved by local actions alone, then it is time to face reef degradation head-on, by directly addressing anthropogenic climate change-the root cause of global coral decline.
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Affiliation(s)
- John F Bruno
- Department of Biology, University of North Carolina, Chapel Hill, North Carolina 27599-3280, USA;
| | - Isabelle M Côté
- Earth to Ocean Research Group, Department of Biological Sciences, Simon Fraser University, Burnaby, British Columbia V5A 1S6, Canada
| | - Lauren T Toth
- St. Petersburg Coastal and Marine Science Center, US Geological Survey, St. Petersburg, Florida 33701, USA
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26
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Perry CT, Alvarez‐Filip L. Changing geo‐ecological functions of coral reefs in the Anthropocene. Funct Ecol 2018. [DOI: 10.1111/1365-2435.13247] [Citation(s) in RCA: 38] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/02/2023]
Affiliation(s)
- Chris T. Perry
- Geography College of Life and Environmental Sciences University of Exeter Exeter UK
| | - Lorenzo Alvarez‐Filip
- Biodiversity and Reef Conservation Laboratory Unidad Académica de Sistemas Arrecifales Instituto de Ciencias del Mar y Limnología Universidad Nacional Autónoma de Mexico Puerto Morelos Quintana Roo Mexico
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