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Hederström V, Ekroos J, Friberg M, Krausl T, Opedal ØH, Persson AS, Petrén H, Quan Y, Smith HG, Clough Y. Pollinator-mediated effects of landscape-scale land use on grassland plant community composition and ecosystem functioning - seven hypotheses. Biol Rev Camb Philos Soc 2024; 99:675-698. [PMID: 38118437 DOI: 10.1111/brv.13040] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/29/2022] [Revised: 12/05/2023] [Accepted: 12/07/2023] [Indexed: 12/22/2023]
Abstract
Environmental change is disrupting mutualisms between organisms worldwide. Reported declines in insect populations and changes in pollinator community compositions in response to land use and other environmental drivers have put the spotlight on the need to conserve pollinators. While this is often motivated by their role in supporting crop yields, the role of pollinators for reproduction and resulting taxonomic and functional assembly in wild plant communities has received less attention. Recent findings suggest that observed and experimental gradients in pollinator availability can affect plant community composition, but we know little about when such shifts are to be expected, or the impact they have on ecosystem functioning. Correlations between plant traits related to pollination and plant traits related to other important ecosystem functions, such as productivity, nitrogen uptake or palatability to herbivores, lead us to expect non-random shifts in ecosystem functioning in response to changes in pollinator communities. At the same time, ecological and evolutionary processes may counteract these effects of pollinator declines, limiting changes in plant community composition, and in ecosystem functioning. Despite calls to investigate community- and ecosystem-level impacts of reduced pollination, the study of pollinator effects on plants has largely been confined to impacts on plant individuals or single-species populations. With this review we aim to break new ground by bringing together aspects of landscape ecology, ecological and evolutionary plant-insect interactions, and biodiversity-ecosystem functioning research, to generate new ideas and hypotheses about the ecosystem-level consequences of pollinator declines in response to land-use change, using grasslands as a focal system. Based on an integrated set of seven hypotheses, we call for more research investigating the putative pollinator-mediated links between landscape-scale land use and ecosystem functioning. In particular, future research should use combinations of experimental and observational approaches to assess the effects of changes in pollinator communities over multiple years and across species on plant communities and on trait distributions both within and among species.
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Affiliation(s)
- Veronica Hederström
- Centre for Environmental and Climate Science, Lund University, Sölvegatan 37, Lund, 223 62, Sweden
| | - Johan Ekroos
- Centre for Environmental and Climate Science, Lund University, Sölvegatan 37, Lund, 223 62, Sweden
| | - Magne Friberg
- Department of Biology, Lund University, Sölvegatan 37, Lund, 223 62, Sweden
| | - Theresia Krausl
- Centre for Environmental and Climate Science, Lund University, Sölvegatan 37, Lund, 223 62, Sweden
| | - Øystein H Opedal
- Department of Biology, Lund University, Sölvegatan 37, Lund, 223 62, Sweden
| | - Anna S Persson
- Centre for Environmental and Climate Science, Lund University, Sölvegatan 37, Lund, 223 62, Sweden
| | - Hampus Petrén
- Department of Biology, Lund University, Sölvegatan 37, Lund, 223 62, Sweden
| | - Yuanyuan Quan
- Centre for Environmental and Climate Science, Lund University, Sölvegatan 37, Lund, 223 62, Sweden
| | - Henrik G Smith
- Centre for Environmental and Climate Science, Lund University, Sölvegatan 37, Lund, 223 62, Sweden
- Department of Biology, Lund University, Sölvegatan 37, Lund, 223 62, Sweden
| | - Yann Clough
- Centre for Environmental and Climate Science, Lund University, Sölvegatan 37, Lund, 223 62, Sweden
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Acoca-Pidolle S, Gauthier P, Devresse L, Deverge Merdrignac A, Pons V, Cheptou PO. Ongoing convergent evolution of a selfing syndrome threatens plant-pollinator interactions. THE NEW PHYTOLOGIST 2024; 242:717-726. [PMID: 38113924 DOI: 10.1111/nph.19422] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/08/2023] [Accepted: 10/31/2023] [Indexed: 12/21/2023]
Abstract
Plant-pollinator interactions evolved early in the angiosperm radiation. Ongoing environmental changes are however leading to pollinator declines that may cause pollen limitation to plants and change the evolutionary pressures shaping plant mating systems. We used resurrection ecology methodology to contrast ancestors and contemporary descendants in four natural populations of the field pansy (Viola arvensis) in the Paris region (France), a depauperate pollinator environment. We combine population genetics analysis, phenotypic measurements and behavioural tests on a common garden experiment. Population genetics analysis reveals 27% increase in realized selfing rates in the field during this period. We documented trait evolution towards smaller and less conspicuous corollas, reduced nectar production and reduced attractiveness to bumblebees, with these trait shifts convergent across the four studied populations. We demonstrate the rapid evolution of a selfing syndrome in the four studied plant populations, associated with a weakening of the interactions with pollinators over the last three decades. This study demonstrates that plant mating systems can evolve rapidly in natural populations in the face of ongoing environmental changes. The rapid evolution towards a selfing syndrome may in turn further accelerate pollinator declines, in an eco-evolutionary feedback loop with broader implications to natural ecosystems.
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Affiliation(s)
- Samson Acoca-Pidolle
- Centre d'Ecologie Fonctionnelle et Evolutive (CEFE), University of Montpellier, CNRS, EPHE, IRD, Montpellier, 34293, France
| | - Perrine Gauthier
- Centre d'Ecologie Fonctionnelle et Evolutive (CEFE), University of Montpellier, CNRS, EPHE, IRD, Montpellier, 34293, France
| | - Louis Devresse
- Centre d'Ecologie Fonctionnelle et Evolutive (CEFE), University of Montpellier, CNRS, EPHE, IRD, Montpellier, 34293, France
| | - Antoine Deverge Merdrignac
- Centre d'Ecologie Fonctionnelle et Evolutive (CEFE), University of Montpellier, CNRS, EPHE, IRD, Montpellier, 34293, France
| | - Virginie Pons
- Centre d'Ecologie Fonctionnelle et Evolutive (CEFE), University of Montpellier, CNRS, EPHE, IRD, Montpellier, 34293, France
| | - Pierre-Olivier Cheptou
- Centre d'Ecologie Fonctionnelle et Evolutive (CEFE), University of Montpellier, CNRS, EPHE, IRD, Montpellier, 34293, France
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Christie K, Pierson NR, Holeski LM, Lowry DB. Resurrected seeds from herbarium specimens reveal rapid evolution of drought resistance in a selfing annual. AMERICAN JOURNAL OF BOTANY 2023; 110:e16265. [PMID: 38102863 DOI: 10.1002/ajb2.16265] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/19/2023] [Revised: 10/19/2023] [Accepted: 10/20/2023] [Indexed: 12/17/2023]
Abstract
PREMISE Increased aridity and drought associated with climate change are exerting unprecedented selection pressures on plant populations. Whether populations can rapidly adapt, and which life history traits might confer increased fitness under drought, remain outstanding questions. METHODS We utilized a resurrection ecology approach, leveraging dormant seeds from herbarium collections to assess whether populations of Plantago patagonica from the semi-arid Colorado Plateau have rapidly evolved in response to approximately ten years of intense drought in the region. We quantified multiple traits associated with drought escape and drought resistance and assessed the survival of ancestors and descendants under simulated drought. RESULTS Descendant populations displayed a significant shift in resource allocation, in which they invested less in reproductive tissues and relatively more in both above- and below-ground vegetative tissues. Plants with greater leaf biomass survived longer under terminal drought; moreover, even after accounting for the effect of increased leaf biomass, descendant seedlings survived drought longer than their ancestors. CONCLUSIONS Our results document rapid adaptive evolution in response to climate change in a selfing annual and suggest that shifts in tissue allocation strategies may underlie adaptive responses to drought in arid or semi-arid environments. This work also illustrates a novel approach, documenting that under specific circumstances, seeds from herbarium specimens may provide an untapped source of dormant propagules for future resurrection experiments.
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Affiliation(s)
- Kyle Christie
- Department of Biological Sciences, Northern Arizona University, Flagstaff, Arizona, 86011, USA
- Department of Plant Biology, Michigan State University, East Lansing, Michigan, 48824, USA
| | - Natalie R Pierson
- Department of Biological Sciences, Northern Arizona University, Flagstaff, Arizona, 86011, USA
| | - Liza M Holeski
- Department of Biological Sciences, Northern Arizona University, Flagstaff, Arizona, 86011, USA
- Center for Adaptive Western Landscapes, Northern Arizona University, Flagstaff, Arizona, 86011, USA
| | - David B Lowry
- Department of Plant Biology, Michigan State University, East Lansing, Michigan, 48824, USA
- Plant Resilience Institute, Michigan State University, East Lansing, Michigan, 48824, USA
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Spear MM, Levi SJ, Etterson JR, Gross BL. Resurrecting urban sunflowers: Phenotypic and molecular changes between antecedent and modern populations separated by 36 years. Mol Ecol 2023; 32:5241-5259. [PMID: 37667619 DOI: 10.1111/mec.17112] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/22/2022] [Accepted: 07/31/2023] [Indexed: 09/06/2023]
Abstract
Resurrection experiments provide a unique opportunity to evaluate phenotypic and molecular evolution in response to environmental challenges. To understand the evolution of urban populations of Helianthus annuus, we compared plants from 36-year-old antecedent seed collections to modern seed collections from the same area using molecular and quantitative genetic approaches. We found 200 differentially expressed transcripts between antecedent and modern groups, and transcript expression was generally higher in modern samples as compared to antecedent samples. Admixture analysis indicated gene flow from domesticated to modern populations over time. After a greenhouse refresher generation, one antecedent-modern population pair was grown under two water availability (well-watered and drought) and temperature (ambient and elevated by 2.8°C) conditions reflecting historical and contemporary climates. Overall, 78% (7 out of 9) of traits differed between the antecedent and modern populations, with modern individuals displaying some trait changes that are coherent with climate changes expectations and some trait changes in the direction of crop varieties. Phenotypic selection analysis showed that modern trait values were often favoured by selection, especially in environmental treatments resembling modern conditions. Trait heritability in the antecedent population was five times as high as in the modern population, on average. In addition, phenotypic plasticity for some traits, such as flowering phenology, was present in the antecedent population but absent in the modern population. The combination of phenotypic and molecular information suggests that evolution has been influenced by crop-wild introgression, adaptive processes and drift. We discuss these results in the context of continued evolution in response to anthropogenic factors.
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Affiliation(s)
- Marissa M Spear
- Department of Biology, University of Minnesota Duluth, Duluth, Minnesota, USA
| | - Sophie J Levi
- Department of Biology, University of Minnesota Duluth, Duluth, Minnesota, USA
| | - Julie R Etterson
- Department of Biology, University of Minnesota Duluth, Duluth, Minnesota, USA
| | - Briana L Gross
- Department of Biology, University of Minnesota Duluth, Duluth, Minnesota, USA
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Rauschkolb R, Durka W, Godefroid S, Dixon L, Bossdorf O, Ensslin A, Scheepens JF. Recent evolution of flowering time across multiple European plant species correlates with changes in aridity. Oecologia 2023:10.1007/s00442-023-05414-w. [PMID: 37462737 PMCID: PMC10386928 DOI: 10.1007/s00442-023-05414-w] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/22/2022] [Accepted: 07/02/2023] [Indexed: 07/21/2023]
Abstract
Ongoing global warming and increasing drought frequencies impact plant populations and potentially drive rapid evolutionary adaptations. Historical comparisons, where plants grown from seeds collected in the past are compared to plants grown from freshly collected seeds from populations of the same sites, are a powerful method to investigate recent evolutionary changes across many taxa. We used 21-38 years old seeds of 13 European plant species, stored in seed banks and originating from Mediterranean and temperate regions, together with recently collected seeds from the same sites for a greenhouse experiment to investigate shifts in flowering phenology as a potential result of adaptive evolution to changes in drought intensities over the last decades. We further used single nucleotide polymorphism (SNP) markers to quantify relatedness and levels of genetic variation. We found that, across species, current populations grew faster and advanced their flowering. These shifts were correlated with changes in aridity at the population origins, suggesting that increased drought induced evolution of earlier flowering, whereas decreased drought lead to weak or inverse shifts in flowering phenology. In five out of the 13 species, however, the SNP markers detected strong differences in genetic variation and relatedness between the past and current populations collected, indicating that other evolutionary processes may have contributed to changes in phenotypes. Our results suggest that changes in aridity may have influenced the evolutionary trajectories of many plant species in different regions of Europe, and that flowering phenology may be one of the key traits that is rapidly evolving.
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Affiliation(s)
- Robert Rauschkolb
- Department of Plant Biodiversity, Institute of Ecology and Evolution with Herbarium Haussknecht and Botanical Garden, Friedrich Schiller University Jena, Philosophenweg 16, 07743, Jena, Germany.
- Plant Evolutionary Ecology, Institute of Evolution and Ecology, University of Tubingen, Auf der Morgenstelle 5, 72076, Tübingen, Germany.
- German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig, Puschstraße 4, 04103, Leipzig, Germany.
| | - Walter Durka
- German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig, Puschstraße 4, 04103, Leipzig, Germany
- Department of Community Ecology, Helmholtz Centre for Environmental Research-UFZ, Theodor Lieser Straße 4, 06120, Halle, Germany
| | | | - Lara Dixon
- Conservatoire Botanique National Méditerranéen de Porquerolles, 34 Avenue Gambetta, 83400, Hyères, France
| | - Oliver Bossdorf
- Plant Evolutionary Ecology, Institute of Evolution and Ecology, University of Tubingen, Auf der Morgenstelle 5, 72076, Tübingen, Germany
| | - Andreas Ensslin
- Conservatory and Botanic Garden of the City of Geneva, Chemin de l'Impératrice 1, 1296, Chambésy, Geneva, Switzerland
| | - J F Scheepens
- Plant Evolutionary Ecology, Faculty of Biological Sciences, Goethe University Frankfurt, Max-Von-Laue-Str. 13, 60438, Frankfurt am Main, Germany
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Malusare SP, Zilio G, Fronhofer EA. Evolution of thermal performance curves: A meta-analysis of selection experiments. J Evol Biol 2023; 36:15-28. [PMID: 36129955 PMCID: PMC10087336 DOI: 10.1111/jeb.14087] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/09/2022] [Accepted: 07/21/2022] [Indexed: 01/11/2023]
Abstract
Temperatures are increasing due to global changes, putting biodiversity at risk. Organisms are faced with a limited set of options to cope with this situation: adapt, disperse or die. We here focus on the first possibility, more specifically, on evolutionary adaptations to temperature. Ectotherms are usually characterized by a hump-shaped relationship between fitness and temperature, a non-linear reaction norm that is referred to as thermal performance curve (TPC). To understand and predict impacts of global change, we need to know whether and how such TPCs evolve. Therefore, we performed a systematic literature search and a statistical meta-analysis focusing on experimental evolution and artificial selection studies. This focus allows us to directly quantify relative fitness responses to temperature selection by calculating fitness differences between TPCs from ancestral and derived populations after thermal selection. Out of 7561 publications screened, we found 47 studies corresponding to our search criteria representing taxa across the tree of life, from bacteria, to plants and vertebrates. We show that, independently of species identity, the studies we found report a positive response to temperature selection. Considering entire TPC shapes, adaptation to higher temperatures traded off with fitness at lower temperatures, leading to niche shifts. Effects were generally stronger in unicellular organisms. By contrast, we do not find statistical support for the often discussed "Hotter is better" hypothesis. While our meta-analysis provides evidence for adaptive potential of TPCs across organisms, it also highlights that more experimental work is needed, especially for under-represented taxa, such as plants and non-model systems.
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Affiliation(s)
- Sarthak P Malusare
- Institut des Sciences de l'Evolution de Montpellier (ISEM), Université de Montpellier, CNRS, IRD, EPHE, Montpellier, France
| | - Giacomo Zilio
- Institut des Sciences de l'Evolution de Montpellier (ISEM), Université de Montpellier, CNRS, IRD, EPHE, Montpellier, France
| | - Emanuel A Fronhofer
- Institut des Sciences de l'Evolution de Montpellier (ISEM), Université de Montpellier, CNRS, IRD, EPHE, Montpellier, France
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Climate-Driven Adaptive Differentiation in Melia azedarach: Evidence from a Common Garden Experiment. Genes (Basel) 2022; 13:genes13111924. [DOI: 10.3390/genes13111924] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/18/2022] [Revised: 10/10/2022] [Accepted: 10/19/2022] [Indexed: 11/04/2022] Open
Abstract
Studies of local adaptation in populations of chinaberry (Melia azedarach L.) are important for clarifying patterns in the population differentiation of this species across its natural range. M. azedarach is an economically important timber species, and its phenotype is highly variable across its range in China. Here, we collected M. azedarach seeds from 31 populations across its range and conducted a common garden experiment. We studied patterns of genetic differentiation among populations using molecular markers (simple sequence repeats) and data on phenotypic variation in six traits collected over five years. Our sampled populations could be subdivided into two groups based on genetic analyses, as well as patterns of isolation by distance and isolation by environment. Significant differentiation in growth traits was observed among provenances and families within provenances. Geographic distance was significantly correlated with the quantitative genetic differentiation (QST) in height (HEIT) and crown breadth. Climate factors were significantly correlated with the QST for each trait. A total of 23 climatic factors were examined. There was a significant effect of temperature on all traits, and minimum relative humidity had a significant effect on the survival rate over four years. By comparing the neutral genetic differentiation (FST) with the QST, the mode of selection acting on survival rate varied, whereas HEIT and the straightness of the main trunk were subject to the same mode of selection. The variation in survival rate was consistent with the variation in genetic differentiation among populations, which was indicative of local adaptation. Overall, our findings provide new insights into the responses of the phenological traits of M. azedarach to changes in the climate conditions of China.
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Latron M, Arnaud J, Schmitt E, Duputié A. Idiosyncratic shifts in life‐history traits at species' geographic range edges. OIKOS 2022. [DOI: 10.1111/oik.09098] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
| | | | - Eric Schmitt
- Univ. Lille, CNRS, UMR 8198 – Evo‐Eco‐Paleo Lille France
| | - Anne Duputié
- Univ. Lille, CNRS, UMR 8198 – Evo‐Eco‐Paleo Lille France
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Sandner TM, Gemeinholzer B, Lemmer J, Matthies D, Ensslin A. Continuous inbreeding affects genetic variation, phenology, and reproductive strategy in ex situ cultivated Digitalis lutea. AMERICAN JOURNAL OF BOTANY 2022; 109:1545-1559. [PMID: 36164840 DOI: 10.1002/ajb2.16075] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/08/2022] [Revised: 08/31/2022] [Accepted: 08/31/2022] [Indexed: 06/16/2023]
Abstract
PREMISE Ex situ cultivation is important for plant conservation, but cultivation in small populations may result in genetic changes by drift, inbreeding, or unconscious selection. Repeated inbreeding potentially influences not only plant fitness, but also floral traits and interactions with pollinators, which has not yet been studied in an ex situ context. METHODS We studied the molecular genetic variation of Digitalis lutea from a botanic garden population cultivated for 30 years, a frozen seed bank conserving the original genetic structure, and two current wild populations including the source population. In a common garden, we studied the effects of experimental inbreeding and between-population crosses on performance, reproductive traits, and flower visitation of plants from the garden and a wild population. RESULTS Significant genetic differentiation was found between the garden population and the wild population from which the seeds had originally been gathered. After experimental selfing, inbreeding depression was only found for germination and leaf size of plants from the wild population, indicating a history of inbreeding in the smaller garden population. Moreover, garden plants flowered earlier and had floral traits related to selfing, whereas wild plants had traits related to attracting pollinators. Bumblebees visited more flowers of outbred than inbred plants and of wild than garden plants. CONCLUSIONS Our case study suggests that high levels of inbreeding during ex situ cultivation can influence reproductive traits and thus interactions with pollinators. Together with the effects of genetic erosion and unconscious selection, these changes may affect the success of reintroductions into natural habitats.
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Affiliation(s)
- Tobias M Sandner
- Plant Ecology, Department of Biology, Philipps-Universität Marburg, Marburg, Germany
| | | | | | - Diethart Matthies
- Plant Ecology, Department of Biology, Philipps-Universität Marburg, Marburg, Germany
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Toll-Riera M, Olombrada M, Castro-Giner F, Wagner A. A limit on the evolutionary rescue of an Antarctic bacterium from rising temperatures. SCIENCE ADVANCES 2022; 8:eabk3511. [PMID: 35857489 PMCID: PMC9286510 DOI: 10.1126/sciadv.abk3511] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 07/07/2021] [Accepted: 06/01/2022] [Indexed: 06/15/2023]
Abstract
Climate change is gradual, but it can also cause brief extreme heat waves that can exceed the upper thermal limit of any one organism. To study the evolutionary potential of upper thermal tolerance, we evolved the cold-adapted Antarctic bacterium Pseudoalteromonas haloplanktis to survive at 30°C, beyond its ancestral thermal limit. This high-temperature adaptation occurred rapidly and in multiple populations. It involved genomic changes that occurred in a highly parallel fashion and mitigated the effects of protein misfolding. However, it also confronted a physiological limit, because populations failed to grow beyond 30°C. Our experiments aimed to facilitate evolutionary rescue by using a small organism with large populations living at temperatures several degrees below their upper thermal limit. Larger organisms with smaller populations and living at temperatures closer to their upper thermal tolerances are even more likely to go extinct during extreme heat waves.
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Affiliation(s)
- Macarena Toll-Riera
- Department of Evolutionary Biology and Environmental Studies, University of Zurich, Zurich, Switzerland
| | - Miriam Olombrada
- Department of Evolutionary Biology and Environmental Studies, University of Zurich, Zurich, Switzerland
| | | | - Andreas Wagner
- Department of Evolutionary Biology and Environmental Studies, University of Zurich, Zurich, Switzerland
- Swiss Institute of Bioinformatics, Lausanne, Switzerland
- The Santa Fe Institute, Santa Fe, NM, USA
- Stellenbosch Institute for Advanced Study (STIAS), Wallenberg Research Centre at Stellenbosch University, Stellenbosch 7600, South Africa
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Rauschkolb R, Li Z, Godefroid S, Dixon L, Durka W, Májeková M, Bossdorf O, Ensslin A, Scheepens JF. Evolution of plant drought strategies and herbivore tolerance after two decades of climate change. THE NEW PHYTOLOGIST 2022; 235:773-785. [PMID: 35357713 DOI: 10.1111/nph.18125] [Citation(s) in RCA: 8] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/22/2021] [Accepted: 03/24/2022] [Indexed: 06/14/2023]
Abstract
Ongoing global warming, coupled with increased drought frequencies, together with other biotic drivers may have resulted in complex evolutionary adaptation. The resurrection approach, comparing ancestors raised from stored seeds with their contemporary descendants under common conditions, is a powerful method to test for recent evolution in plant populations. We used 21-26-yr-old seeds of four European plant species - Matthiola tricuspidata, Plantago crassifolia, Clinopodium vulgare and Leontodon hispidus - stored in seed banks together with re-collected seeds from their wild populations. To test for evolutionary changes, we conducted a glasshouse experiment that quantified heritable changes in plant responses to drought and simulated insect herbivory. In three out of the four studied species, we found evidence that descendants had evolved shorter life cycles through faster growth and flowering. Shifts in the osmotic potential and leaf dry matter content indicated that descendants also evolved increased drought tolerance. A comparison of quantitative genetic differentiation (QST ) vs neutral molecular differentiation (FST ) values, using double digest restriction-site associated DNA (ddRAD) genotyping data, suggested that directional selection, and therefore adaptive evolution, was underlying some of the observed phenotypic changes. In summary, our study revealed evolutionary changes in plant populations over the last decades that are consistent with adaptation of drought escape and tolerance as well as herbivory avoidance.
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Affiliation(s)
- Robert Rauschkolb
- Plant Evolutionary Ecology, Institute of Evolution and Ecology, University of Tübingen, Auf der Morgenstelle 5, 72076, Tübingen, Germany
- Department of Plant Biodiversity, Institute of Ecology and Evolution with Herbarium Haussknecht and Botanical Garden, Friedrich Schiller University Jena, Germany, Philosophenweg 16, 07743, Jena, Germany
| | - Zixin Li
- Plant Evolutionary Ecology, Institute of Evolution and Ecology, University of Tübingen, Auf der Morgenstelle 5, 72076, Tübingen, Germany
| | | | - Lara Dixon
- Conservatoire Botanique National Méditerranéen de Porquerolles, 34 avenue Gambetta, 83400, Hyères, France
| | - Walter Durka
- Department of Community Ecology, Helmholtz Centre for Environmental Research - UFZ, Theodor-Lieser-Straße 4, 06120, Halle, Germany
- German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig, Deutscher Platz 5e, 04103, Leipzig, Germany
| | - Maria Májeková
- Plant Ecology, Institute of Evolution and Ecology, University of Tübingen, Auf der Morgenstelle 5, 72076, Tübingen, Germany
| | - Oliver Bossdorf
- Plant Evolutionary Ecology, Institute of Evolution and Ecology, University of Tübingen, Auf der Morgenstelle 5, 72076, Tübingen, Germany
| | - Andreas Ensslin
- Conservatory and Botanic Garden of the City of Geneva, 1296, Chambésy, Geneva, Switzerland
| | - J F Scheepens
- Plant Evolutionary Ecology, Faculty of Biological Sciences, Institute of Ecology, Evolution and Diversity, Goethe University Frankfurt, Max-von-Laue-Str. 13, 60438, Frankfurt am Main, Germany
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Baczyński J, Sauquet H, Spalik K. Exceptional evolutionary lability of flower-like inflorescences (pseudanthia) in Apiaceae subfamily Apioideae. AMERICAN JOURNAL OF BOTANY 2022; 109:437-455. [PMID: 35112711 PMCID: PMC9310750 DOI: 10.1002/ajb2.1819] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 08/27/2021] [Revised: 12/19/2021] [Accepted: 12/22/2021] [Indexed: 06/14/2023]
Abstract
PREMISE Pseudanthia are widespread and have long been postulated to be a key innovation responsible for some of the angiosperm radiations. The aim of our study was to analyze macroevolutionary patterns of these flower-like inflorescences and their potential correlation with diversification rates in Apiaceae subfamily Apioideae. In particular, we were interested to investigate evolvability of pseudanthia and evaluate their potential association with changes in the size of floral display. METHODS The framework for our analyses consisted of a time-calibrated phylogeny of 1734 representatives of Apioideae and a morphological matrix of inflorescence traits encoded for 847 species. Macroevolutionary patterns in pseudanthia were inferred using Markov models of discrete character evolution and stochastic character mapping, and a principal component analysis was used to visualize correlations in inflorescence architecture. The interdependence between net diversification rates and the occurrence of pseudocorollas was analyzed with trait-independent and trait-dependent approaches. RESULTS Pseudanthia evolved in 10 major clades of Apioideae with at least 36 independent origins and 46 reversals. The morphospace analysis recovered differences in color and compactness between floral and hyperfloral pseudanthia. A correlation between pseudocorollas and size of inflorescence was also strongly supported. Contrary to our predictions, pseudanthia are not responsible for variation in diversification rates identified in this subfamily. CONCLUSIONS Our results suggest that pseudocorollas evolve as an answer to the trade-off between enlargement of floral display and costs associated with production of additional flowers. The high evolvability and architectural differences in apioid pseudanthia may be explained on the basis of adaptive wandering and evolutionary developmental biology.
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Affiliation(s)
- Jakub Baczyński
- Institute of Evolutionary Biology, Faculty of BiologyUniversity of Warsaw Biological and Chemical Research CentreWarsawPoland
| | - Hervé Sauquet
- National Herbarium of New South Wales (NSW)Royal Botanic Gardens and Domain TrustSydneyNSW2000Australia
- Evolution and Ecology Research Centre, School of Biological, Earth and Environmental SciencesUniversity of New South WalesSydneyAustralia
| | - Krzysztof Spalik
- Institute of Evolutionary Biology, Faculty of BiologyUniversity of Warsaw Biological and Chemical Research CentreWarsawPoland
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13
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Historical comparisons show evolutionary changes in drought responses in European plant species after two decades of climate change. Basic Appl Ecol 2022. [DOI: 10.1016/j.baae.2021.11.003] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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14
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Valencia-Montoya WA, Flaven E, Pouzadoux J, Imbert E, Cheptou PO. Rapid divergent evolution of an annual plant across a latitudinal gradient revealed by seed resurrection. Evolution 2021; 75:2759-2772. [PMID: 34558662 DOI: 10.1111/evo.14364] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/14/2020] [Revised: 08/05/2021] [Accepted: 08/13/2021] [Indexed: 11/29/2022]
Abstract
Global change is expected to drive short-term evolution of natural populations. However, it remains unclear whether different populations are changing in unison. Here, we study contemporary evolution of growth-related and reproductive traits of three populations of Cyanus segetum facing warming and pollinator decline across a latitudinal gradient in France. We resurrected stored seeds sampled up to 24 years apart from northern, central-western, and southern populations and conducted an in situ common-garden experiment. To disentangle neutral from selection-driven differentiation, we calculated neutral genetic differentiation (FST ) and quantitative trait differentiation (QST ) between temporal samples. We found that phenotypic evolution was divergent across populations exhibiting different trends for rosette size, date of flowering, and capitula size. By measuring seed set as a proxy of fitness, we showed that samples with larger mean capitula size outperformed samples with smaller mean capitula size in the western and southern populations. Regression of traits on seed set showed that flowering date and capitula size are the primary determinants of fitness, and QST -FST comparisons indicated that natural selection has likely contributed to the shifts in flowering phenology and rosette size. These findings outline the potential for rescue of natural populations through contemporary evolution and emphasize the complex interplay between spatial and temporal variation in species' responses to global change.
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Affiliation(s)
- Wendy A Valencia-Montoya
- CEFE UMR 5175, CNRS, Université de Montpellier, Université Paul-Valery Montpellier, EPHE, Montpellier, 34090, France.,Current Address: Department of Organismic and Evolutionary Biology and Museum of Comparative Zoology, Harvard University, Cambridge, Massachusetts, 02138
| | - Elodie Flaven
- ISEM, University of Montpellier, Montpellier, 34000, France
| | | | - Eric Imbert
- ISEM, University of Montpellier, Montpellier, 34000, France
| | - Pierre-Olivier Cheptou
- CEFE UMR 5175, CNRS, Université de Montpellier, Université Paul-Valery Montpellier, EPHE, Montpellier, 34090, France
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15
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Münzbergová Z, Vandvik V, Hadincová V. Evolutionary Rescue as a Mechanism Allowing a Clonal Grass to Adapt to Novel Climates. FRONTIERS IN PLANT SCIENCE 2021; 12:659479. [PMID: 34079569 PMCID: PMC8166245 DOI: 10.3389/fpls.2021.659479] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 02/02/2021] [Accepted: 03/30/2021] [Indexed: 06/12/2023]
Abstract
Filing gaps in our understanding of species' abilities to adapt to novel climates is a key challenge for predicting future range shifts and biodiversity loss. Key knowledge gaps are related to the potential for evolutionary rescue in response to climate, especially in long-lived clonally reproducing species. We illustrate a novel approach to assess the potential for evolutionary rescue using a combination of reciprocal transplant experiment in the field to assess performance under a changing climate and independent growth chamber assays to assess growth- and physiology-related plant trait maxima and plasticities of the same clones. We use a clonal grass, Festuca rubra, as a model species. We propagated individual clones and used them in a transplant experiment across broad-scale temperature and precipitation gradients, simulating the projected direction of climate change in the region. Independent information on trait maxima and plasticities of the same clones was obtained by cultivating them in four growth chambers representing climate extremes. Plant survival was affected by interaction between plant traits and climate change, with both trait plasticities and maxima being important for adaptation to novel climates. Key traits include plasticity in extravaginal ramets, aboveground biomass, and osmotic potential. The direction of selection in response to a given climatic change detected in this study mostly contradicted the natural trait clines indicating that short-term selection pressure as identified here does not match long-term selection outcomes. Long-lived clonal species exposed to different climatic changes are subjected to consistent selection pressures on key traits, a necessary condition for adaptation to novel conditions. This points to evolutionary rescue as an important mechanism for dealing with climate change in these species. Our experimental approach may be applied also in other model systems broadening our understanding of evolutionary rescue. Such knowledge cannot be easily deduced from observing the existing field clines.
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Affiliation(s)
- Zuzana Münzbergová
- Institute of Botany, Czech Academy of Sciences, Prague, Czechia
- Department of Botany, Faculty of Science, Charles University, Prague, Czechia
| | - Vigdis Vandvik
- Department of Biological Sciences and Bjerknes Centre for Climate Research, University of Bergen, Bergen, Norway
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16
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Kooyers NJ, Morioka KA, Colicchio JM, Clark KS, Donofrio A, Estill SK, Pascualy CR, Anderson IC, Hagler M, Cho C, Blackman BK. Population responses to a historic drought across the range of the common monkeyflower (Mimulus guttatus). AMERICAN JOURNAL OF BOTANY 2021; 108:284-296. [PMID: 33400274 DOI: 10.1002/ajb2.1589] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/15/2020] [Accepted: 08/26/2020] [Indexed: 06/12/2023]
Abstract
PREMISE Due to climate change, more frequent and intense periodic droughts are predicted to increasingly pose major challenges to the persistence of plant populations. When a severe drought occurs over a broad geographical region, independent responses by individual populations provide replicated natural experiments for examining the evolution of drought resistance and the potential for evolutionary rescue. METHODS We used a resurrection approach to examine trait evolution in populations of the common monkeyflower, Mimulus guttatus, exposed to a record drought in California from 2011 to 2017. Specifically, we compared variation in traits related to drought escape and avoidance from seeds collected from 37 populations pre- and post-drought in a common garden. In a parallel experiment, we evaluated fitness in two populations, one which thrived and one which was nearly extirpated during the drought, under well-watered and dry-down conditions. RESULTS We observed substantial variation among populations in trait evolution. In the subset of populations where phenotypes changed significantly, divergence proceeded along trait correlations with some populations flowering rapidly with less vegetative tissue accumulation and others delaying flowering with greater vegetative tissue accumulation. The degree of trait evolution was only weakly correlated with drought intensity but strongly correlated with initial levels of standing variation. Fitness was higher in the post-drought than pre-drought accessions in both treatments for the thriving population, but lower in both treatments for the nearly extirpated population. CONCLUSIONS Together, our results indicate that evolutionary responses to drought are context dependent and reflect the standing genetic variation and genetic correlations present within populations.
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Affiliation(s)
- Nicholas J Kooyers
- Department of Biology, University of Louisiana, Lafayette, LA, 70503, USA
| | - Kelsie A Morioka
- Department of Plant and Microbial Biology, University of California, Berkeley, CA, 94720, USA
| | - Jack M Colicchio
- Department of Plant and Microbial Biology, University of California, Berkeley, CA, 94720, USA
| | - Kaitlyn S Clark
- Department of Integrative Biology, University of South Florida, Tampa, FL, 33620, USA
| | - Abigail Donofrio
- Department of Integrative Biology, University of South Florida, Tampa, FL, 33620, USA
| | - Shayne K Estill
- Department of Plant and Microbial Biology, University of California, Berkeley, CA, 94720, USA
| | - Catalina R Pascualy
- Department of Plant and Microbial Biology, University of California, Berkeley, CA, 94720, USA
| | - Ian C Anderson
- Department of Plant and Microbial Biology, University of California, Berkeley, CA, 94720, USA
| | - Megan Hagler
- Department of Plant and Microbial Biology, University of California, Berkeley, CA, 94720, USA
| | - Chloe Cho
- Department of Plant and Microbial Biology, University of California, Berkeley, CA, 94720, USA
| | - Benjamin K Blackman
- Department of Plant and Microbial Biology, University of California, Berkeley, CA, 94720, USA
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17
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Fišer Ž, Aronne G, Aavik T, Akin M, Alizoti P, Aravanopoulos F, Bacchetta G, Balant M, Ballian D, Barazani O, Bellia AF, Bernhardt N, Bou Dagher Kharrat M, Bugeja Douglas A, Burkart M, Ćalić D, Carapeto A, Carlsen T, Castro S, Colling G, Cursach J, Cvetanoska S, Cvetkoska C, Ćušterevska R, Daco L, Danova K, Dervishi A, Djukanović G, Dragićević S, Ensslin A, Evju M, Fenu G, Francisco A, Gallego PP, Galloni M, Ganea A, Gemeinholzer B, Glasnović P, Godefroid S, Goul Thomsen M, Halassy M, Helm A, Hyvärinen M, Joshi J, Kazić A, Kiehn M, Klisz M, Kool A, Koprowski M, Kövendi-Jakó A, Kříž K, Kropf M, Kull T, Lanfranco S, Lazarević P, Lazarević M, Lebel Vine M, Liepina L, Loureiro J, Lukminė D, Machon N, Meade C, Metzing D, Milanović Đ, Navarro L, Orlović S, Panis B, Pankova H, Parpan T, Pašek O, Peci D, Petanidou T, Plenk K, Puchałka R, Radosavljević I, Rankou H, Rašomavičius V, Romanciuc G, Ruotsalainen A, Šajna N, Salaj T, Sánchez-Romero C, Sarginci M, Schäfer D, Seberg O, Sharrock S, Šibík J, Šibíková M, Skarpaas O, Stanković Neđić M, Stojnic S, Surina B, Szitár K, Teofilovski A, Thoroddsen R, Tsvetkov I, Uogintas D, Van Meerbeek K, van Rooijen N, Vassiliou L, Verbylaitė R, Vergeer P, Vít P, Walczak M, Widmer A, Wiland-Szymańska J, Zdunić G, Zippel E. ConservePlants: An integrated approach to conservation of threatened plants for the 21st Century. RESEARCH IDEAS AND OUTCOMES 2021. [DOI: 10.3897/rio.7.e62810] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022] Open
Abstract
Even though plants represent an essential part of our lives offering exploitational, supporting and cultural services, we know very little about the biology of the rarest and most threatened plant species, and even less about their conservation status. Rapid changes in the environment and climate, today more pronounced than ever, affect their fitness and distribution causing rapid species declines, sometimes even before they had been discovered. Despite the high goals set by conservationists to protect native plants from further degradation and extinction, the initiatives for the conservation of threatened species in Europe are scattered and have not yielded the desired results. The main aim of this Action is to improve plant conservation in Europe through the establishment of a network of scientists and other stakeholders who deal with different aspects of plant conservation, from plant taxonomy, ecology, conservation genetics, conservation physiology and reproductive biology to protected area's managers, not forgetting social scientists, who are crucial when dealing with the general public.
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18
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Everingham SE, Offord CA, Sabot MEB, Moles AT. Time-traveling seeds reveal that plant regeneration and growth traits are responding to climate change. Ecology 2020; 102:e03272. [PMID: 33336401 DOI: 10.1002/ecy.3272] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 06/09/2020] [Revised: 09/29/2020] [Accepted: 10/26/2020] [Indexed: 01/04/2023]
Abstract
Studies assessing the biological impacts of climate change typically rely on long-term, historic data to measure trait responses to climate through time. Here, we overcame the problem of absent historical data by using resurrected seeds to capture historic plant-trait data for a number of plant regeneration and growth traits. We collected seed and seedling trait measurements from resurrected historic seeds and compared these with modern seed and seedling traits collected from the same species in the same geographic location. We found a total of 43 species from southeastern Australia for which modern/historic seed pairs could be located. These species were located in a range of regions that have undergone different amounts of climate change across a range of temperature, precipitation, and extreme measures of climate. There was a correlation between the amount of change in climate metrics, and the amount of change in plant traits. Using stepwise model selection, we found that for all regeneration and growth trait changes (except change in stem density), the most accurate model selected at least two measures of climate change. Changes in extreme measures of climate, such as heat-wave duration and changes in climate variability, were more strongly related to changes in regeneration and growth traits than changes in mean climate metrics. Across our species, for every 5% increase in temperature variability, there was a threefold increase in the probability of seed viability and seed germination success. An increase of 1 d in the maximum duration of dry spells through time led to a 1.5-fold decrease in seed viability and seeds became 30% flatter/thinner. Regions where the maximum heat-wave duration had increased by 10 d saw a 1.35-cm decrease in seedling height and a 1.04-g decrease in seedling biomass. Rapid responses in plant traits to changes in climate may be possible; however, it is not clear whether these changes will be fast enough for plants to keep pace with future climate change.
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Affiliation(s)
- Susan E Everingham
- School of Biological Earth and Environmental Sciences, Evolution and Ecology Research Centre, University of New South Wales, Sydney, New South Wales, 2052, Australia.,The Australian PlantBank, Royal Botanic Gardens and Domain Trust, Australian Botanic Garden, Mount Annan, New South Wales, 2567, Australia
| | - Catherine A Offord
- The Australian PlantBank, Royal Botanic Gardens and Domain Trust, Australian Botanic Garden, Mount Annan, New South Wales, 2567, Australia
| | - Manon E B Sabot
- Climate Change Research Centre, University of New South Wales, Sydney, New South Wales, 2052, Australia.,Australian Research Council Centre of Excellence for Climate Extremes, University of New South Wales, Sydney, New South Wales, 2052, Australia
| | - Angela T Moles
- School of Biological Earth and Environmental Sciences, Evolution and Ecology Research Centre, University of New South Wales, Sydney, New South Wales, 2052, Australia
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19
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Peschel AR, Boehm EL, Shaw RG. Estimating the capacity of Chamaecrista fasciculata for adaptation to change in precipitation. Evolution 2020; 75:73-85. [PMID: 33215695 DOI: 10.1111/evo.14131] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/03/2020] [Revised: 09/21/2020] [Accepted: 10/21/2020] [Indexed: 11/30/2022]
Abstract
Adaptation through natural selection may be the only means by which small and fragmented plant populations will persist through present day environmental change. A population's additive genetic variance for fitness (VA (W)) represents its immediate capacity to adapt to the environment in which it exists. We evaluated this property for a population of the annual legume Chamaecrista fasciculata through a quantitative genetic experiment in the tallgrass prairie region of the Midwestern United States, where changing climate is predicted to include more variability in rainfall. To reduce incident rainfall, relative to controls receiving ambient rain, we deployed rain exclusion shelters. We found significant VA (W) in both treatments. We also detected a significant genotype-by-treatment interaction for fitness, which suggests that the genetic basis of the response to natural selection will differ depending on precipitation. For the trait-specific leaf area, we detected maladaptive phenotypic plasticity and an interaction between genotype and environment. Selection for thicker leaves was detected with increased precipitation. These results indicate capacity of this population of C. fasciculata to adapt in situ to environmental change.
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Affiliation(s)
- Anna Riba Peschel
- Department of Fisheries, Wildlife, and Conservation Biology, University of Minnesota, St. Paul, Minnesota, 55108.,Department of Ecology, Evolution, and Behavior, University of Minnesota, St. Paul, Minnesota, 55108
| | - Emma Lauren Boehm
- Department of Ecology, Evolution, and Behavior, University of Minnesota, St. Paul, Minnesota, 55108.,Current Address: Department of Biology, Indiana University Bloomington, Bloomington, Indiana, 47405
| | - Ruth Geyer Shaw
- Department of Ecology, Evolution, and Behavior, University of Minnesota, St. Paul, Minnesota, 55108
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20
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Hällfors M, Lehvävirta S, Aandahl T, Lehtimäki IM, Nilsson LO, Ruotsalainen A, Schulman LE, Hyvärinen MT. Translocation of an arctic seashore plant reveals signs of maladaptation to altered climatic conditions. PeerJ 2020; 8:e10357. [PMID: 33240662 PMCID: PMC7682418 DOI: 10.7717/peerj.10357] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/04/2020] [Accepted: 10/23/2020] [Indexed: 01/20/2023] Open
Abstract
Ongoing anthropogenic climate change alters the local climatic conditions to which species may be adapted. Information on species' climatic requirements and their intraspecific variation is necessary for predicting the effects of climate change on biodiversity. We used a climatic gradient to test whether populations of two allopatric varieties of an arctic seashore herb (Primula nutans ssp. finmarchica) show adaptation to their local climates and how a future warmer climate may affect them. Our experimental set-up combined a reciprocal translocation within the distribution range of the species with an experiment testing the performance of the sampled populations in warmer climatic conditions south of their range. We monitored survival, size, and flowering over four growing seasons as measures of performance and, thus, proxies of fitness. We found that both varieties performed better in experimental gardens towards the north. Interestingly, highest up in the north, the southern variety outperformed the northern one. Supported by weather data, this suggests that the climatic optima of both varieties have moved at least partly outside their current range. Further warming would make the current environments of both varieties even less suitable. We conclude that Primula nutans ssp. finmarchica is already suffering from adaptational lag due to climate change, and that further warming may increase this maladaptation, especially for the northern variety. The study also highlights that it is not sufficient to run only reciprocal translocation experiments. Climate change is already shifting the optimum conditions for many species and adaptation needs also to be tested outside the current range of the focal taxon in order to include both historic conditions and future conditions.
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Affiliation(s)
- Maria Hällfors
- Research Centre for Environmental Change, Organismal and Evolutionary Biology Research Programme, Faculty of Biological and Environmental Sciences, University of Helsinki, Helsinki, Finland.,Botany Unit, Finnish Museum of Natural History, University of Helsinki, Helsinki, Finland
| | - Susanna Lehvävirta
- Botany Unit, Finnish Museum of Natural History, University of Helsinki, Helsinki, Finland.,Department of Landscape Architecture, Planning and Management, Swedish University of Agricultural Sciences, Alnarp, Sweden
| | - Tone Aandahl
- Norwegian Institute of Bioeconomy Research (NIBIO), Division of Environment and Natural Resources, Ås, Norway
| | - Iida-Maria Lehtimäki
- Botany Unit, Finnish Museum of Natural History, University of Helsinki, Helsinki, Finland
| | - Lars Ola Nilsson
- Norwegian Institute of Bioeconomy Research (NIBIO), Division of Environment and Natural Resources, Ås, Norway.,Halmstad University, Halmstad, Sweden
| | - Anna Ruotsalainen
- Department of Ecology and Genetics, University of Oulu, Oulu, Finland
| | - Leif E Schulman
- Botany Unit, Finnish Museum of Natural History, University of Helsinki, Helsinki, Finland
| | - Marko T Hyvärinen
- Botany Unit, Finnish Museum of Natural History, University of Helsinki, Helsinki, Finland
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21
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Mahaut L, Cheptou PO, Fried G, Munoz F, Storkey J, Vasseur F, Violle C, Bretagnolle F. Weeds: Against the Rules? TRENDS IN PLANT SCIENCE 2020; 25:1107-1116. [PMID: 32600939 DOI: 10.1016/j.tplants.2020.05.013] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/24/2020] [Revised: 05/19/2020] [Accepted: 05/28/2020] [Indexed: 06/11/2023]
Abstract
Establishing laws of plant and ecosystems functioning has been an overarching objective of functional and evolutionary ecology. However, most theories neglect the role of human activities in creating novel ecosystems characterized by species assemblages and environmental factors that are not observed in natural systems. We argue that agricultural weeds, as an emblematic case of such an 'ecological novelty', constitute an original and underutilized model for challenging current concepts in ecology and evolution. We highlight key aspects of weed ecology and evolutionary biology that can help to test and recast ecological and evolutionary laws in a changing world. We invite ecologists to seize upon weeds as a model system to improve our understanding of the short-term and long-term dynamics of ecological systems in the Anthropocene.
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Affiliation(s)
- Lucie Mahaut
- CEFE, Univ Montpellier, CNRS, EPHE, IRD, UnivPaul Valéry Montpellier 3, Montpellier, France.
| | - Pierre-Olivier Cheptou
- CEFE, Univ Montpellier, CNRS, EPHE, IRD, UnivPaul Valéry Montpellier 3, Montpellier, France
| | - Guillaume Fried
- Anses, Laboratoire de la Santé des Végétaux, Unité Entomologie et Plantes invasives, 755 avenue du Campus Agropolis, 34988 Montferrier-sur-Lez, France
| | - François Munoz
- Laboratoire Interdisciplinaire de Physique (LIPhy), Université de Grenoble-Alpes, Grenoble, France
| | | | - François Vasseur
- CEFE, Univ Montpellier, CNRS, EPHE, IRD, UnivPaul Valéry Montpellier 3, Montpellier, France; Laboratoire d'Ecophysiologie des Plantes sous Stress Environnementaux (LEPSE), Institut National de la Recherche Agronomique (INRAE), Montpellier SupAgro, UMR 759, 34000 Montpellier, France
| | - Cyrille Violle
- CEFE, Univ Montpellier, CNRS, EPHE, IRD, UnivPaul Valéry Montpellier 3, Montpellier, France
| | - François Bretagnolle
- Université Bourgogne Franche Comte, Biogeosciences, UMR 6282, Centre National de la Recherche Scientifique (CNRS), Dijon, France
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22
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Muñoz-Pajares AJ, Abdelaziz M, Picó FX. Temporal migration rates affect the genetic structure of populations in the biennial Erysimum mediohispanicum with reproductive asynchrony. AOB PLANTS 2020; 12:plaa037. [PMID: 32904355 PMCID: PMC7454028 DOI: 10.1093/aobpla/plaa037] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/17/2020] [Accepted: 07/20/2020] [Indexed: 05/06/2023]
Abstract
Migration is a process with important implications for the genetic structure of populations. However, there is an aspect of migration seldom investigated in plants: migration between temporally isolated groups of individuals within the same geographic population. The genetic implications of temporal migration can be particularly relevant for semelparous organisms, which are those that reproduce only once in a lifetime after a certain period of growth. In this case, reproductive asynchrony in individuals of the same population generates demes of individuals differing in their developmental stage (non-reproductive and reproductive). These demes are connected by temporal migrants, that is, individuals that become annually asynchronous with respect to the rest of individuals of their same deme. Here, we investigated the extent of temporal migration and its effects on temporal genetic structure in the biennial plant Erysimum mediohispanicum. To this end, we conducted two independent complementary approaches. First, we empirically estimated temporal migration rates and temporal genetic structure in four populations of E. mediohispanicum during three consecutive years using nuclear microsatellites markers. Second, we developed a demographic genetic simulation model to assess genetic structure for different migration scenarios differing in temporal migration rates and their occurrence probabilities. We hypothesized that genetic structure decreased with increasing temporal migration rates due to the homogenizing effect of migration. Empirical and modelling results were consistent and indicated a U-shape relationship between genetic structure and temporal migration rates. Overall, they indicated the existence of temporal genetic structure and that such genetic structure indeed decreased with increasing temporal migration rates. However, genetic structure increased again at high temporal migration rates. The results shed light into the effects of reproductive asynchrony on important population genetic parameters. Our study contributes to unravel the complexity of some processes that may account for genetic diversity and genetic structure of natural populations.
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Affiliation(s)
- A Jesús Muñoz-Pajares
- Departamento de Genética, Universidad de Granada, Granada, Spain
- Research Center in Biodiversity and Genetic Resources (CIBIO), Campus Agrário de Vairão, Vairão, Portugal
- Corresponding author’s e-mail address:
| | - Mohamed Abdelaziz
- Departamento de Genética, Universidad de Granada, Granada, Spain
- Biological and Environmental Sciences, School of Natural Sciences, University of Stirling, Stirling, UK
| | - F Xavier Picó
- Departamento de Ecología Integrativa, Estación Biológica de Doñana (EBD), Consejo Superior de Investigaciones Científicas (CSIC), Sevilla, Spain
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23
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Lambrecht SC, Gujral AK, Renshaw LJ, Rosengreen LT. Evolutionary and plastic changes in a native annual plant after a historic drought. Ecol Evol 2020; 10:4570-4582. [PMID: 32551044 PMCID: PMC7297769 DOI: 10.1002/ece3.6156] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/17/2019] [Revised: 01/24/2020] [Accepted: 02/14/2020] [Indexed: 01/27/2023] Open
Abstract
Severe droughts are forecast to increase with global change. Approaches that enable the study of contemporary evolution, such as resurrection studies, are valuable for providing insights into the responses of populations to global change. In this study, we used a resurrection approach to study the evolution of the California native Leptosiphon bicolor (true babystars, Polemoniaceae) across populations differing in precipitation in response to the state's recent prolonged drought (2011-2017). In the Mediterranean climate region in which L. bicolor grows, this historic drought effectively shortened its growing season. We used seeds collected both before and after this drought from three populations found along a moisture availability gradient to assess contemporary evolution in a common garden greenhouse study. We coupled this with a drought experiment to examine plasticity. We found evolution toward earlier flowering after the historic drought in the wettest of the three populations, while plasticity to experimental drought was observed across all three. We also observed trade-offs associated with earlier flowering. In the driest population, plants that flowered earlier had lower intrinsic water-use efficiency than those flowering later, which was an expected pattern. Unexpectedly, earlier flowering plants had larger flowers. Two populations exhibited evolution and plasticity toward smaller flowers with drought. The third exhibited evolution toward larger flowers, but displayed no plasticity. Our results provide valuable insights into differences among native plant populations in response to drought.
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Affiliation(s)
- Susan C. Lambrecht
- Department of Biological SciencesSan Jose State UniversitySan JoseCalifornia
| | - Anjum K. Gujral
- Department of Biological SciencesSan Jose State UniversitySan JoseCalifornia
| | - Lani J. Renshaw
- Department of Biological SciencesSan Jose State UniversitySan JoseCalifornia
| | - Lars T. Rosengreen
- Department of Biological SciencesSan Jose State UniversitySan JoseCalifornia
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24
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Peterson ML, Angert AL, Kay KM. Experimental migration upward in elevation is associated with strong selection on life history traits. Ecol Evol 2020; 10:612-625. [PMID: 32015830 PMCID: PMC6988539 DOI: 10.1002/ece3.5710] [Citation(s) in RCA: 12] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/22/2019] [Revised: 08/10/2019] [Accepted: 09/05/2019] [Indexed: 12/26/2022] Open
Abstract
One of the strongest biological impacts of climate change has been the movement of species poleward and upward in elevation. Yet, what is not clear is the extent to which the spatial distribution of locally adapted lineages and ecologically important traits may also shift with continued climate change. Here, we take advantage of a transplant experiment mimicking up-slope seed dispersal for a suite of ecologically diverse populations of yellow monkeyflower (Mimulus guttatus sensu lato) into a high-elevation common garden during an extreme drought period in the Sierra Nevada mountains, California, USA. We use a demographic approach to quantify fitness and test for selection on life history traits in local versus lower-elevation populations and in normal versus drought years to test the potential for up-slope migration and phenotypic selection to alter the distribution of key life history traits in montane environments. We find that lower-elevation populations tend to outperform local populations, confirming the potential for up-slope migration. Although selection generally favored some local montane traits, including larger flowers and larger stem size at flowering, drought conditions tended to select for earlier flowering typical of lower-elevation genotypes. Taken together, this suggests that monkeyflower lineages moving upward in elevation could experience selection for novel trait combinations, particularly under warmer and drier conditions that are predicted to occur with continued climate change.
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Affiliation(s)
- Megan L. Peterson
- Ecology and Evolutionary BiologyUniversity of California Santa CruzSanta CruzCalifornia
| | - Amy L. Angert
- Department of Botany and ZoologyUniversity of British ColumbiaVancouverBCCanada
| | - Kathleen M. Kay
- Ecology and Evolutionary BiologyUniversity of California Santa CruzSanta CruzCalifornia
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25
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Qian C, Yan X, Shi Y, Yin H, Chang Y, Chen J, Ingvarsson PK, Nevo E, Ma XF. Adaptive signals of flowering time pathways in wild barley from Israel over 28 generations. Heredity (Edinb) 2020; 124:62-76. [PMID: 31527784 PMCID: PMC6906298 DOI: 10.1038/s41437-019-0264-5] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/16/2019] [Revised: 08/13/2019] [Accepted: 08/13/2019] [Indexed: 01/06/2023] Open
Abstract
Flowering time is one of the most critical traits for plants' life cycles, which is influenced by various environment changes, such as global warming. Previous studies have suggested that to guarantee reproductive success, plants have shifted flowering times to adapt to global warming. Although many studies focused on the molecular mechanisms of early flowering, little was supported by the repeated sampling at different time points through the changing climate. To fully dissect the temporal and spatial evolutionary genetics of flowering time, we investigated nucleotide variation in ten flowering time candidate genes and nine reference genes for the same ten wild-barley populations sampled 28 years apart (1980-2008). The overall genetic differentiation was significantly greater in the descendant populations (2008) compared with the ancestral populations (1980); however, local adaptation tests failed to detect any single-nucleotide polymorphism (SNP)/indel under spatial-diversifying selection at either time point. By contrast, the WFABC (Wright-Fisher ABC-based approach) that detected 54 SNPs/indels was under strong selection during the past 28 generations. Moreover, all these 54 alleles were segregated in the ancestral populations, but fixed in the descendent populations. Among the top ten SNPs/indels, seven were located in genes of FT1 (FLOWERING TIME LOCUS T 1), CO1 (CONSTANS-LIKE PROTEIN 1), and VRN-H2 (VERNALIZATION-H2), which have been documented to be associated with flowering time regulation in barley cultivars. This study might suggest that all ten populations have undergone parallel evolution over the past few decades in response to global warming, and even an overwhelming local adaptation and ecological differentiation.
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Affiliation(s)
- Chaoju Qian
- Department of Ecology and Agriculture Research, Key Laboratory of Stress Physiology and Ecology in Cold and Arid Regions, Gansu Province, Northwest Institute of Eco-Environment and Resources, Chinese Academy of Sciences, Lanzhou, 730000, Gansu, China
| | - Xia Yan
- School of Life Sciences, Nantong University, Nantong, 226019, Jiangsu, China
| | - Yong Shi
- Germplasm Bank of Wild Species in Southwest China, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, 650201, Yunnan, China
| | - Hengxia Yin
- State Key Laboratory of Plateau Ecology and Agriculture, Qinghai University, Xining, 810016, Qinghai, China
| | - Yuxiao Chang
- Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences, Shenzhen, 450002, China
| | - Jun Chen
- College of Life Sciences, Zhejiang University, Hangzhou, 310058, Zhejiang, China
| | - Pär K Ingvarsson
- Department of Plant Biology, Swedish University of Agricultural Sciences, Uppsala BioCenter, SE-750 07, Uppsala, Sweden
| | - Eviatar Nevo
- Institute of Evolution, University of Haifa, Haifa, 3498838, Israel.
| | - Xiao-Fei Ma
- Department of Ecology and Agriculture Research, Key Laboratory of Stress Physiology and Ecology in Cold and Arid Regions, Gansu Province, Northwest Institute of Eco-Environment and Resources, Chinese Academy of Sciences, Lanzhou, 730000, Gansu, China.
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26
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Franks SJ, Sekor MR, Davey S, Weis AE. Artificial seed aging reveals the invisible fraction: Implications for evolution experiments using the resurrection approach. Evol Ecol 2019. [DOI: 10.1007/s10682-019-10007-2] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022]
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27
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Dickman EE, Pennington LK, Franks SJ, Sexton JP. Evidence for adaptive responses to historic drought across a native plant species range. Evol Appl 2019; 12:1569-1582. [PMID: 31462915 PMCID: PMC6708426 DOI: 10.1111/eva.12803] [Citation(s) in RCA: 31] [Impact Index Per Article: 6.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/05/2018] [Revised: 03/15/2019] [Accepted: 03/19/2019] [Indexed: 01/03/2023] Open
Abstract
As climatic conditions change, species will be forced to move or adapt to avoid extinction. Exacerbated by ongoing climate change, California recently experienced a severe and exceptional drought from 2011 to 2017. To investigate whether an adaptive response occurred during this event, we conducted a "resurrection" study of the cutleaf monkeyflower (Mimulus laciniatus), an annual plant, by comparing trait means and variances of ancestral seed collections ("pre-drought") with contemporary descendant collections ("drought"). Plants were grown under common conditions to test whether this geographically restricted species has the capacity to respond evolutionarily to climate stress across its range. We examined if traits shifted in response to the recent, severe drought and included populations across an elevation gradient, including populations at the low- and high-elevation edges of the species range. We found that time to seedling emergence in the drought generation was significantly earlier than in the pre-drought generation, a response consistent with drought adaptation. Additionally, trait variation in days to emergence was reduced in the drought generation, which suggests selection or bottleneck events. Days to first flower increased significantly by elevation, consistent with climate adaptation across the species range. Drought generation plants were larger and had greater reproduction, which was likely a carryover effect of earlier germination. These results demonstrate that rapid shifts in trait means and variances consistent with climate adaptation are occurring within populations, including peripheral populations at warm and cold climate limits, of a plant species with a relatively restricted range that has so far not shifted its elevation distribution during contemporary climate change. Thus, rapid evolution may mitigate, at least temporarily, range shifts under global climate change. This study highlights the need for better understanding rapid adaptation as a means for plant communities to cope with extraordinary climate events.
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Affiliation(s)
- Erin E. Dickman
- Department of Life and Environmental SciencesUniversity of CaliforniaMercedCalifornia
- Yosemite National ParkEl PortalCalifornia
| | - Lillie K. Pennington
- Department of Life and Environmental SciencesUniversity of CaliforniaMercedCalifornia
| | - Steven J. Franks
- Department of Biological SciencesFordham UniversityBronxNew York
| | - Jason P. Sexton
- Department of Life and Environmental SciencesUniversity of CaliforniaMercedCalifornia
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28
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Cheptou PO. Does the evolution of self-fertilization rescue populations or increase the risk of extinction? ANNALS OF BOTANY 2019; 123:337-345. [PMID: 30052766 PMCID: PMC6344216 DOI: 10.1093/aob/mcy144] [Citation(s) in RCA: 19] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/27/2018] [Accepted: 07/06/2018] [Indexed: 05/09/2023]
Abstract
BACKGROUND AND AIMS As a major evolutionary transition in seed plants, the evolution of plant mating systems has been much debated in evolutionary ecology. Over the last 10 years, well-established patterns of evolution have emerged. On the one hand, experimental studies have shown that self-fertilization is likely to evolve in a few generations (microevolution) as a response to rapid environmental change (e.g. pollinator decline), eventually rescuing a population. On the other, phylogenetic studies have demonstrated that repeated evolution towards self-fertilization (macroevolution) leads to a higher risk of lineage extinction and is thus likely to be disadvantageous in the long term. SCOPE In either case - the short-term or long-term evolution of self-fertilization (selfing) - these findings indicate that a mating system is not neutral with respect to population or lineage persistence. They also suggest that selfing can have contrasting effects depending on time scale. This raises the question of whether mating system evolution can rescue populations facing environmental change. In this review, empirical and theoretical evidence of the direct and indirect effects of mating systems on population demography and lineage persistence were analysed. A simple theoretical evolutionary rescue model was also developed to investigate the potential for evolutionary rescue through selfing. KEY FINDINGS Demographic studies consistently show a short-term advantage of selfing provided by reproductive assurance, but a long-term disadvantage for selfing lineages, suggesting indirect genomic consequences of selfing (e.g. mutation load and lower adaptability). However, our theoretical evolutionary rescue model found that even in the short term, while mating system evolution can lead to evolutionary rescue, it can also lead to evolutionary suicide, due to the inherent frequency-dependent selection of mating system traits. CONCLUSIONS These findings point to the importance of analysing the demographic consequences of self-fertilization in order to predict the effect of selfing on population persistence as well as take into account the indirect genomic consequences of selfing. The pace at which processes such as inbreeding depression, purging, reproductive assurance and genomic rearrangements occur after the selfing transition is the key to clarifying whether or not selfing will result in evolutionary rescue.
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Affiliation(s)
- P -O Cheptou
- CEFE UMR 5175, CNRS, Université de Montpellier, Université Paul-Valery Montpellier, EPHE, Montpellier cedex 05, France
- For correspondence. E-mail
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29
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Caruso CM, Eisen KE, Martin RA, Sletvold N. A meta-analysis of the agents of selection on floral traits. Evolution 2018; 73:4-14. [PMID: 30411337 DOI: 10.1111/evo.13639] [Citation(s) in RCA: 86] [Impact Index Per Article: 14.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/28/2018] [Revised: 10/23/2018] [Accepted: 10/24/2018] [Indexed: 01/03/2023]
Abstract
Floral traits are hypothesized to evolve primarily in response to selection by pollinators. However, selection can also be mediated by other environmental factors. To understand the relative importance of pollinator-mediated selection and its variation among trait and pollinator types, we analyzed directional selection gradients on floral traits from experiments that manipulated the environment to identify agents of selection. Pollinator-mediated selection was stronger than selection by other biotic factors (e.g., herbivores), but similar in strength to selection by abiotic factors (e.g., soil water), providing partial support for the hypothesis that floral traits evolve primarily in response to pollinators. Pollinator-mediated selection was stronger on pollination efficiency traits than on other trait types, as expected if efficiency traits affect fitness via interactions with pollinators, but other trait types also affect fitness via other environmental factors. In addition to varying among trait types, pollinator-mediated selection varied among pollinator taxa: selection was stronger when bees, long-tongued flies, or birds were the primary visitors than when the primary visitors were Lepidoptera or multiple animal taxa. Finally, reducing pollinator access to flowers had a relatively small effect on selection on floral traits, suggesting that anthropogenic declines in pollinator populations would initially have modest effects on floral evolution.
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Affiliation(s)
- Christina M Caruso
- Department of Integrative Biology, University of Guelph, Guelph, Ontario, N1G 2W1, Canada
| | - Katherine E Eisen
- Department of Integrative Biology, University of Guelph, Guelph, Ontario, N1G 2W1, Canada.,Current Address: Department of Ecology and Evolutionary Biology, Cornell University, Ithaca, New York, 14853
| | - Ryan A Martin
- Department of Biology, Case Western Reserve University, Cleveland, Ohio, 44106
| | - Nina Sletvold
- Department of Ecology and Genetics, Uppsala University, Uppsala, 751 05, Sweden
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30
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Hall JM, Buckelew A, Lovern M, Secor SM, Warner DA. Seasonal Shifts in Reproduction Depend on Prey Availability for an Income Breeder. Physiol Biochem Zool 2018; 91:1129-1147. [DOI: 10.1086/700341] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/03/2022]
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31
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Gómez R, Méndez-Vigo B, Marcer A, Alonso-Blanco C, Picó FX. Quantifying temporal change in plant population attributes: insights from a resurrection approach. AOB PLANTS 2018; 10:ply063. [PMID: 30370042 PMCID: PMC6198925 DOI: 10.1093/aobpla/ply063] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/24/2018] [Accepted: 10/05/2018] [Indexed: 05/11/2023]
Abstract
Rapid evolution in annual plants can be quantified by comparing phenotypic and genetic changes between past and contemporary individuals from the same populations over several generations. Such knowledge will help understand the response of plants to rapid environmental shifts, such as the ones imposed by global climate change. To that end, we undertook a resurrection approach in Spanish populations of the annual plant Arabidopsis thaliana that were sampled twice over a decade. Annual weather records were compared to their historical records to extract patterns of climatic shifts over time. We evaluated the differences between samplings in flowering time, a key life-history trait with adaptive significance, with a field experiment. We also estimated genetic diversity and differentiation based on neutral nuclear markers and nucleotide diversity in candidate flowering time (FRI and FLC) and seed dormancy (DOG1) genes. The role of genetic drift was estimated by computing effective population sizes with the temporal method. Overall, two climatic scenarios were detected: intense warming with increased precipitation and moderate warming with decreased precipitation. The average flowering time varied little between samplings. Instead, within-population variation in flowering time exhibited a decreasing trend over time. Substantial temporal changes in genetic diversity and differentiation were observed with both nuclear microsatellites and candidate genes in all populations, which were interpreted as the result of natural demographic fluctuations. We conclude that drought stress caused by moderate warming with decreased precipitation may have the potential to reduce within-population variation in key life-cycle traits, perhaps as a result of stabilizing selection on them, and to constrain the genetic differentiation over time. Besides, the demographic behaviour of populations probably accounts for the substantial temporal patterns of genetic variation, while keeping rather constant those of phenotypic variation.
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Affiliation(s)
- Rocío Gómez
- Departamento de Ecología Integrativa, Estación Biológica de Doñana (EBD), Consejo Superior de Investigaciones Científicas (CSIC), Sevilla, Spain
| | - Belén Méndez-Vigo
- Departamento de Genética Molecular de Plantas, Centro Nacional de Biotecnología (CNB), Consejo Superior de Investigaciones Científicas (CSIC), Madrid, Spain
| | - Arnald Marcer
- CREAF, Cerdanyola del Vallès, Spain
- Universitat Autònoma de Barcelona, Cerdanyola del Vallès, Spain
| | - Carlos Alonso-Blanco
- Departamento de Genética Molecular de Plantas, Centro Nacional de Biotecnología (CNB), Consejo Superior de Investigaciones Científicas (CSIC), Madrid, Spain
| | - F Xavier Picó
- Departamento de Ecología Integrativa, Estación Biológica de Doñana (EBD), Consejo Superior de Investigaciones Científicas (CSIC), Sevilla, Spain
- Corresponding author’s e-mail address:
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32
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Mu J, Wu Q, Yang Y, Huang M, Grozinger CM. Plant reproductive strategies vary under low and high pollinator densities. OIKOS 2018. [DOI: 10.1111/oik.04711] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Junpeng Mu
- Ecological Security and Protection Key Laboratory of Sichuan Province; Mianyang Normal Univ.; CN-621000 Mianyang China
| | - Qinggui Wu
- Ecological Security and Protection Key Laboratory of Sichuan Province; Mianyang Normal Univ.; CN-621000 Mianyang China
| | - Yulian Yang
- Ecological Security and Protection Key Laboratory of Sichuan Province; Mianyang Normal Univ.; CN-621000 Mianyang China
| | - Mei Huang
- Ecological Security and Protection Key Laboratory of Sichuan Province; Mianyang Normal Univ.; CN-621000 Mianyang China
| | - Christina M. Grozinger
- Dept of Entomology; Center for Pollinator Research, The Pennsylvania State Univ.; PA USA
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33
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Polymorphic nuclear markers for coastal plant species with dynamic geographic distributions, the rock samphire (Crithmum maritimum) and the vulnerable dune pansy (Viola tricolor subsp. curtisii). Mol Biol Rep 2018; 45:203-209. [PMID: 29404829 DOI: 10.1007/s11033-018-4153-4] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/13/2017] [Accepted: 01/31/2018] [Indexed: 10/18/2022]
Abstract
Identifying spatial patterns of genetic differentiation across a species range is critical to set up conservation and restoration decision-making. This is especially timely, since global change triggers shifts in species' geographic distribution and in the geographical variation of mating system and patterns of genetic differentiation, with varying consequences at the trailing and leading edges of a species' distribution. Using 454 pyrosequencing, we developed nuclear microsatellite loci for two plant species showing a strictly coastal geographical distribution and contrasting range dynamics: the expanding rock samphire (Crithmum maritimum, 21 loci) and the highly endangered and receding dune pansy (Viola tricolor subsp. curtisii, 12 loci). Population genetic structure was then assessed by genotyping more than 100 individuals from four populations of each of the two target species. Rock samphire displayed high levels of genetic differentiation (FST = 0.38), and a genetic structure typical of a mostly selfing species (FIS ranging from 0.16 to 0.58). Populations of dune pansy showed a less pronounced level of population structuring (FST = 0.25) and a genotypic structure more suggestive of a mixed-mating system when excluding two loci with heterozygote excess. These results demonstrate that the genetic markers developed here are useful to assess the mating system of populations of these two species. They will be tools of choice to investigate phylogeographical patterns and variation in mating system over the geographical distribution ranges for two coastal plant species that are subject to dynamic evolution due to rapid contemporary global change.
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34
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Weis AE. Detecting the "invisible fraction" bias in resurrection experiments. Evol Appl 2017; 11:88-95. [PMID: 29302274 PMCID: PMC5748523 DOI: 10.1111/eva.12533] [Citation(s) in RCA: 32] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/01/2017] [Accepted: 07/24/2017] [Indexed: 01/04/2023] Open
Abstract
The resurrection approach is a powerful tool for estimating phenotypic evolution in response to global change. Ancestral generations, revived from dormant propagules, are grown side by side with descendent generations in the same environment. Phenotypic differences between the generations can be attributed to genetic change over time. Project Baseline was established to capitalize on this potential in flowering plants. Project participants collected, froze, and stored seed from 10 or more natural populations of 61 North American plant species. These will be made available in the future for resurrection experiments. One problem with this approach can arise if nonrandom mortality during storage biases the estimate of ancestral mean phenotype, which in turn would bias the estimate of evolutionary change. This bias—known as the “invisible fraction” problem—can arise if seed traits that affect survival during storage and revival are genetically correlated to postemergence traits of interest. The bias is trivial if seed survival is high. Here, I show that with low seed survival, bias can be either trivial or catastrophic. Serious bias arises when (i) most seeds deaths are selective with regard to the seed traits, and (ii) the genetic correlations between the seed and postemergence traits are strong. An invisible fraction bias can be diagnosed in seed collections that are family structured. A correlation between the family mean survival rate and the family mean of a focal postemergence trait indicates that seed mortality was not random with respect to genes affecting the focal trait, biasing the sample mean. Fortunately, family structure was incorporated into the sampling scheme for the Project Baseline collection, which will allow bias detection. New and developing statistical procedures that can incorporate genealogical information into the analysis of resurrection experiments may enable bias correction.
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Affiliation(s)
- Arthur E Weis
- Department of Ecology and Evolutionary Biology University of Toronto Toronto ON Canada.,Koffler Scientific Reserve at Jokers Hill University of Toronto King City ON Canada
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35
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Franks SJ, Hamann E, Weis AE. Using the resurrection approach to understand contemporary evolution in changing environments. Evol Appl 2017; 11:17-28. [PMID: 29302269 PMCID: PMC5748528 DOI: 10.1111/eva.12528] [Citation(s) in RCA: 63] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/02/2017] [Accepted: 07/27/2017] [Indexed: 12/23/2022] Open
Abstract
The resurrection approach of reviving ancestors from stored propagules and comparing them with descendants under common conditions has emerged as a powerful method of detecting and characterizing contemporary evolution. As climatic and other environmental conditions continue to change at a rapid pace, this approach is becoming particularly useful for predicting and monitoring evolutionary responses. We evaluate this approach, explain the advantages and limitations, suggest best practices for implementation, review studies in which this approach has been used, and explore how it can be incorporated into conservation and management efforts. We find that although the approach has thus far been used in a limited number of cases, these studies have provided strong evidence for rapid contemporary adaptive evolution in a variety of systems, particularly in response to anthropogenic environmental change, although it is far from clear that evolution will be able to rescue many populations from extinction given current rates of global changes. We also highlight one effort, known as Project Baseline, to create a collection of stored seeds that can take advantage of the resurrection approach to examine evolutionary responses to environmental change over the coming decades. We conclude that the resurrection approach is a useful tool that could be more widely employed to examine basic questions about evolution in natural populations and to assist in the conservation and management of these populations as they face continued environmental change.
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Affiliation(s)
| | - Elena Hamann
- Department of Biology Fordham University Bronx NY USA
| | - Arthur E Weis
- Department of Ecology and Evolutionary Biology Koffler Scientific Reserve at Jokers Hill University of Toronto Toronto ON Canada
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36
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Byers DL. Studying plant-pollinator interactions in a changing climate: A review of approaches. APPLICATIONS IN PLANT SCIENCES 2017; 5:apps.1700012. [PMID: 28690933 PMCID: PMC5499306 DOI: 10.3732/apps.1700012] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/14/2017] [Accepted: 06/13/2017] [Indexed: 05/21/2023]
Abstract
Plant-pollinator interactions are potentially at risk due to climate change. Because of the spatial and temporal variation associated with the effects of climate change and the responses of both actors, research to assess this interaction requires creative approaches. This review focuses on assessments of plants' and pollinators' altered phenology in response to environmental changes, as phenology is one of the key responses. I reviewed research methods with the goal of presenting the wide diversity of available techniques for addressing changes in these interactions. Approaches ranged from use of historical specimens to multisite experimental community studies; while differing in depth of historical information and community interactions, all contribute to assessment of phenology changes. Particularly insightful were those studies that directly assessed the environmental changes across spatial and temporal scales and the responses of plants and pollinators at these scales. Longer-term studies across environmental gradients, potentially with reciprocal transplants, enable an assessment of climate impacts at both scales. While changes in phenology are well studied, the impacts of phenology changes are not. Future research should include approaches to address this gap.
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Affiliation(s)
- Diane L. Byers
- School of Biological Sciences, Illinois State University, Campus Box 4120, Normal, Illinois 61790-4120 USA
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37
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Scheffers BR, De Meester L, Bridge TCL, Hoffmann AA, Pandolfi JM, Corlett RT, Butchart SHM, Pearce-Kelly P, Kovacs KM, Dudgeon D, Pacifici M, Rondinini C, Foden WB, Martin TG, Mora C, Bickford D, Watson JEM. The broad footprint of climate change from genes to biomes to people. Science 2017; 354:354/6313/aaf7671. [PMID: 27846577 DOI: 10.1126/science.aaf7671] [Citation(s) in RCA: 483] [Impact Index Per Article: 69.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
Abstract
Most ecological processes now show responses to anthropogenic climate change. In terrestrial, freshwater, and marine ecosystems, species are changing genetically, physiologically, morphologically, and phenologically and are shifting their distributions, which affects food webs and results in new interactions. Disruptions scale from the gene to the ecosystem and have documented consequences for people, including unpredictable fisheries and crop yields, loss of genetic diversity in wild crop varieties, and increasing impacts of pests and diseases. In addition to the more easily observed changes, such as shifts in flowering phenology, we argue that many hidden dynamics, such as genetic changes, are also taking place. Understanding shifts in ecological processes can guide human adaptation strategies. In addition to reducing greenhouse gases, climate action and policy must therefore focus equally on strategies that safeguard biodiversity and ecosystems.
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Affiliation(s)
- Brett R Scheffers
- Department of Wildlife Ecology and Conservation, University of Florida, Gainesville, FL 32611-0430, USA.
| | - Luc De Meester
- Laboratory of Aquatic Ecology, Evolution and Conservation, KU Leuven, Ch. De Beriotstraat 32, 3000 Leuven, Belgium
| | - Tom C L Bridge
- Australian Research Council Centre of Excellence for Coral Reef Studies, James Cook University, Townsville QLD 4811, Australia.,Queensland Museum, Townsville, Queensland 4810, Australia
| | - Ary A Hoffmann
- Bio21 Institute, School of Biosciences, University of Melbourne, Victoria 3010, Australia
| | - John M Pandolfi
- School of Biological Sciences and the Australian Research Council Centre of Excellence for Coral Reef Studies, The University of Queensland, Brisbane, Queensland 4072, Australia
| | - Richard T Corlett
- Center for Integrative Conservation, Xishuangbanna Tropical Botanical Gardens, Chinese Academy of Sciences, Yunnan 666303, China
| | - Stuart H M Butchart
- BirdLife International, David Attenborough Building, Pembroke Street, Cambridge CB2 3QZ, UK.,Department of Zoology, University of Cambridge, Downing Street, Cambridge CB2 3EJ, UK
| | | | - Kit M Kovacs
- Norwegian Polar Institute, FRAM Centre, 9296 Tromsø, Norway
| | - David Dudgeon
- School of Biological Sciences, University of Hong Kong, Hong Kong SAR, China
| | - Michela Pacifici
- Global Mammal Assessment Program, Department of Biology and Biotechnologies, Sapienza Università di Roma, Viale dell'Università 32, I-00185 Rome, Italy
| | - Carlo Rondinini
- Global Mammal Assessment Program, Department of Biology and Biotechnologies, Sapienza Università di Roma, Viale dell'Università 32, I-00185 Rome, Italy
| | - Wendy B Foden
- Department of Botany and Zoology, University of Stellenbosch, P/Bag X1, Matieland, 7602 Stellenbosch, South Africa
| | - Tara G Martin
- Department of Forest and Conservation Sciences, University of British Columbia, Vancouver, British Columbia, Canada
| | - Camilo Mora
- Department of Geography, University of Hawaii, Honolulu, Hawaii, USA
| | - David Bickford
- Department of Biological Sciences, National University of Singapore, 14 Science Drive 4, 117543, Singapore
| | - James E M Watson
- School of Geography, Planning and Environmental Management, The University of Queensland, Brisbane, Queensland 4072, Australia.,Global Conservation Program, Wildlife Conservation Society, 2300 Southern Boulevard, Bronx, NY 10460, USA
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38
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Real-time divergent evolution in plants driven by pollinators. Nat Commun 2017; 8:14691. [PMID: 28291771 PMCID: PMC5424062 DOI: 10.1038/ncomms14691] [Citation(s) in RCA: 145] [Impact Index Per Article: 20.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/14/2016] [Accepted: 01/23/2017] [Indexed: 12/28/2022] Open
Abstract
Pollinator-driven diversification is thought to be a major source of floral variation in plants. Our knowledge of this process is, however, limited to indirect assessments of evolutionary changes. Here, we employ experimental evolution with fast cycling Brassica rapa plants to demonstrate adaptive evolution driven by different pollinators. Our study shows pollinator-driven divergent selection as well as divergent evolution in plant traits. Plants pollinated by bumblebees evolved taller size and more fragrant flowers with increased ultraviolet reflection. Bumblebees preferred bumblebee-pollinated plants over hoverfly-pollinated plants at the end of the experiment, showing that plants had adapted to the bumblebees' preferences. Plants with hoverfly pollination became shorter, had reduced emission of some floral volatiles, but increased fitness through augmented autonomous self-pollination. Our study demonstrates that changes in pollinator communities can have rapid consequences on the evolution of plant traits and mating system.
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39
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Opedal ØH, Albertsen E, Armbruster WS, Pérez-Barrales R, Falahati-Anbaran M, Pélabon C. Evolutionary consequences of ecological factors: pollinator reliability predicts mating-system traits of a perennial plant. Ecol Lett 2016; 19:1486-1495. [DOI: 10.1111/ele.12701] [Citation(s) in RCA: 31] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/06/2016] [Accepted: 10/14/2016] [Indexed: 12/23/2022]
Affiliation(s)
- Øystein H. Opedal
- Centre for Biodiversity Dynamics; Department of Biology; Norwegian University of Science and Technology, NTNU; 7491 Trondheim Norway
| | - Elena Albertsen
- Centre for Biodiversity Dynamics; Department of Biology; Norwegian University of Science and Technology, NTNU; 7491 Trondheim Norway
| | - W. Scott Armbruster
- School of Biological Sciences; University of Portsmouth; King Henry Building, King Henry I Street Portsmouth PO1 2DY UK
- Department of Biology; Norwegian University of Science and Technology, NTNU; 7491 Trondheim Norway
- Institute of Arctic Biology; University of Alaska; Fairbanks AK 99775 USA
| | - Rocío Pérez-Barrales
- School of Biological Sciences; University of Portsmouth; King Henry Building, King Henry I Street Portsmouth PO1 2DY UK
| | - Mohsen Falahati-Anbaran
- School of Biology and Center of Excellence in Phylogeny of Living Organisms; University of Tehran; 14155-6455 Tehran Iran
| | - Christophe Pélabon
- Centre for Biodiversity Dynamics; Department of Biology; Norwegian University of Science and Technology, NTNU; 7491 Trondheim Norway
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40
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Kuester A, Wilson A, Chang SM, Baucom RS. A resurrection experiment finds evidence of both reduced genetic diversity and potential adaptive evolution in the agricultural weed Ipomoea purpurea. Mol Ecol 2016; 25:4508-20. [PMID: 27357067 DOI: 10.1111/mec.13737] [Citation(s) in RCA: 33] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/11/2015] [Revised: 05/30/2016] [Accepted: 06/22/2016] [Indexed: 01/18/2023]
Abstract
Despite the negative economic and ecological impact of weeds, relatively little is known about the evolutionary mechanisms that influence their persistence in agricultural fields. Here, we use a resurrection approach to examine the potential for genotypic and phenotypic evolution in Ipomoea purpurea, an agricultural weed that is resistant to glyphosate, the most widely used herbicide in current-day agriculture. We found striking reductions in allelic diversity between cohorts sampled nine years apart (2003 vs. 2012), suggesting that populations of this species sampled from agricultural fields have experienced genetic bottleneck events that have led to lower neutral genetic diversity. Heterozygosity excess tests indicate that these bottlenecks may have occurred prior to 2003. A greenhouse assay of individuals sampled from the field as seed found that populations of this species, on average, exhibited modest increases in herbicide resistance over time. However, populations differed significantly between sampling years for resistance: some populations maintained high resistance between the sampling years whereas others exhibited increased or decreased resistance. Our results show that populations of this noxious weed, capable of adapting to strong selection imparted by herbicide application, may lose genetic variation as a result of this or other environmental factors. We probably uncovered only modest increases in resistance on average between sampling cohorts due to a strong and previously identified fitness cost of resistance in this species, along with the potential that nonresistant migrants germinate from the seed bank.
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Affiliation(s)
- Adam Kuester
- Department of Ecology and Evolutionary Biology, University of Michigan, 2059 Kraus Natural Science Building, 830 North University, Ann Arbor, MI, 48109, USA
| | - Ariana Wilson
- Department of Ecology and Evolutionary Biology, University of Michigan, 2059 Kraus Natural Science Building, 830 North University, Ann Arbor, MI, 48109, USA
| | - Shu-Mei Chang
- Plant Biology Department, University of Georgia, 2502 Plant Sciences Building, 120 Carlton Street, Athens, GA, 30602, USA
| | - Regina S Baucom
- Department of Ecology and Evolutionary Biology, University of Michigan, 2059 Kraus Natural Science Building, 830 North University, Ann Arbor, MI, 48109, USA.
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41
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Holmes MW, Hammond TT, Wogan GOU, Walsh RE, LaBarbera K, Wommack EA, Martins FM, Crawford JC, Mack KL, Bloch LM, Nachman MW. Natural history collections as windows on evolutionary processes. Mol Ecol 2016; 25:864-81. [PMID: 26757135 DOI: 10.1111/mec.13529] [Citation(s) in RCA: 138] [Impact Index Per Article: 17.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/31/2015] [Revised: 11/30/2015] [Accepted: 12/27/2015] [Indexed: 12/14/2022]
Abstract
Natural history collections provide an immense record of biodiversity on Earth. These repositories have traditionally been used to address fundamental questions in biogeography, systematics and conservation. However, they also hold the potential for studying evolution directly. While some of the best direct observations of evolution have come from long-term field studies or from experimental studies in the laboratory, natural history collections are providing new insights into evolutionary change in natural populations. By comparing phenotypic and genotypic changes in populations through time, natural history collections provide a window into evolutionary processes. Recent studies utilizing this approach have revealed some dramatic instances of phenotypic change over short timescales in response to presumably strong selective pressures. In some instances, evolutionary change can be paired with environmental change, providing a context for potential selective forces. Moreover, in a few cases, the genetic basis of phenotypic change is well understood, allowing for insight into adaptive change at multiple levels. These kinds of studies open the door to a wide range of previously intractable questions by enabling the study of evolution through time, analogous to experimental studies in the laboratory, but amenable to a diversity of species over longer timescales in natural populations.
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Affiliation(s)
- Michael W Holmes
- Museum of Vertebrate Zoology and Department of Integrative Biology, University of California, Berkeley, CA, 97420-3140, USA.,Department of Biology, Coastal Carolina University, Conway, SC, 29528, USA
| | - Talisin T Hammond
- Museum of Vertebrate Zoology and Department of Integrative Biology, University of California, Berkeley, CA, 97420-3140, USA
| | - Guinevere O U Wogan
- Museum of Vertebrate Zoology and Department of Integrative Biology, University of California, Berkeley, CA, 97420-3140, USA
| | - Rachel E Walsh
- Museum of Vertebrate Zoology and Department of Integrative Biology, University of California, Berkeley, CA, 97420-3140, USA
| | - Katie LaBarbera
- Museum of Vertebrate Zoology and Department of Integrative Biology, University of California, Berkeley, CA, 97420-3140, USA
| | - Elizabeth A Wommack
- Museum of Vertebrate Zoology and Department of Integrative Biology, University of California, Berkeley, CA, 97420-3140, USA.,Department of Zoology and Physiology, University of Wyoming Museum of Vertebrates, Laramie, WY, 82071, USA
| | - Felipe M Martins
- Museum of Vertebrate Zoology and Department of Integrative Biology, University of California, Berkeley, CA, 97420-3140, USA
| | - Jeremy C Crawford
- Museum of Vertebrate Zoology and Department of Integrative Biology, University of California, Berkeley, CA, 97420-3140, USA
| | - Katya L Mack
- Museum of Vertebrate Zoology and Department of Integrative Biology, University of California, Berkeley, CA, 97420-3140, USA
| | - Luke M Bloch
- Museum of Vertebrate Zoology and Department of Integrative Biology, University of California, Berkeley, CA, 97420-3140, USA
| | - Michael W Nachman
- Museum of Vertebrate Zoology and Department of Integrative Biology, University of California, Berkeley, CA, 97420-3140, USA
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42
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Faehnrich B, Wagner S, Franz C. Vegetative and generative maintenance of self-incompatibility in six accessions of German chamomile. BREEDING SCIENCE 2016; 66:450-455. [PMID: 27436956 PMCID: PMC4902458 DOI: 10.1270/jsbbs.15133] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 10/20/2015] [Accepted: 02/28/2016] [Indexed: 06/06/2023]
Abstract
Self-incompatible (SI) plants are able to form ideal mother lines for hybrid crossing in hermaphroditic plants, assuring fertilization from the desired father line. To find out suitable ways to maintain SI was the aim of this study. Among 220 plants of German chamomile (Matricaria recutita (L.) Rauschert) within six accessions SI-genotypes were selected. SI was determined as staying seedless in three flower heads per plant. Initial SI-plants formed the basic paternal generation (P1) of i) maintaining the same genotypes over six months and repeating seed set analysis (P2) and of ii) conducting crossings in three versions (SI × SI, SI × NSI (not SI evaluated plants) and NSI × SI), thereby producing the F1 population. F1 exhibited 78% SI and P2 62% SI, indicating a higher environmental than genetic influence on SI. But heritability, calculated from the results of SI × SI crossings, showed high values (h(2) = 0.71). Within generative propagation, the influence of generation/crossing version was highly significant (p = 0.001) and the cultivar 'Degumille' explored the highest value of SI (86%) after SI × NSI crossings. Therefore, the intra-cultivar combination of 'Degumille' SI mother plants crossed with NSI father plants can be recommended as the most promising version to maintain SI in chamomile.
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43
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Franks SJ, Kane NC, O'Hara NB, Tittes S, Rest JS. Rapid genome-wide evolution in Brassica rapa populations following drought revealed by sequencing of ancestral and descendant gene pools. Mol Ecol 2016; 25:3622-31. [PMID: 27072809 PMCID: PMC4963267 DOI: 10.1111/mec.13615] [Citation(s) in RCA: 54] [Impact Index Per Article: 6.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/24/2015] [Revised: 02/29/2016] [Accepted: 03/09/2016] [Indexed: 01/18/2023]
Abstract
There is increasing evidence that evolution can occur rapidly in response to selection. Recent advances in sequencing suggest the possibility of documenting genetic changes as they occur in populations, thus uncovering the genetic basis of evolution, particularly if samples are available from both before and after selection. Here, we had a unique opportunity to directly assess genetic changes in natural populations following an evolutionary response to a fluctuation in climate. We analysed genome‐wide differences between ancestors and descendants of natural populations of Brassica rapa plants from two locations that rapidly evolved changes in multiple phenotypic traits, including flowering time, following a multiyear late‐season drought in California. These ancestor‐descendant comparisons revealed evolutionary shifts in allele frequencies in many genes. Some genes showing evolutionary shifts have functions related to drought stress and flowering time, consistent with an adaptive response to selection. Loci differentiated between ancestors and descendants (FST outliers) were generally different from those showing signatures of selection based on site frequency spectrum analysis (Tajima's D), indicating that the loci that evolved in response to the recent drought and those under historical selection were generally distinct. Very few genes showed similar evolutionary responses between two geographically distinct populations, suggesting independent genetic trajectories of evolution yielding parallel phenotypic changes. The results show that selection can result in rapid genome‐wide evolutionary shifts in allele frequencies in natural populations, and highlight the usefulness of combining resurrection experiments in natural populations with genomics for studying the genetic basis of adaptive evolution. see also the Perspective by Hancock
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Affiliation(s)
- Steven J Franks
- Department of Biological Sciences, Fordham University, 441 E. Fordham Road, Bronx, NY, 10458, USA
| | - Nolan C Kane
- Department of Ecology and Evolution, The University of Colorado at Boulder, Ramaley N122, Boulder, CO, 80309, USA
| | - Niamh B O'Hara
- Department of Biological Sciences, Fordham University, 441 E. Fordham Road, Bronx, NY, 10458, USA.,Department of Ecology and Evolution, Stony Brook University, 650 Life Sciences, Stony Brook, NY, 11794, USA
| | - Silas Tittes
- Department of Ecology and Evolution, The University of Colorado at Boulder, Ramaley N122, Boulder, CO, 80309, USA
| | - Joshua S Rest
- Department of Ecology and Evolution, Stony Brook University, 650 Life Sciences, Stony Brook, NY, 11794, USA
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44
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Noël E, Chemtob Y, Janicke T, Sarda V, Pélissié B, Jarne P, David P. Reduced mate availability leads to evolution of self-fertilization and purging of inbreeding depression in a hermaphrodite. Evolution 2016; 70:625-40. [DOI: 10.1111/evo.12886] [Citation(s) in RCA: 25] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/04/2015] [Revised: 02/02/2016] [Accepted: 02/05/2016] [Indexed: 12/30/2022]
Affiliation(s)
- Elsa Noël
- Centre d'Ecologie Fonctionnelle et Evolutive (CEFE), UMR 5175, CNRS, Université de Montpellier; Université Paul Valéry Montpellier; EPHE, 1919 route de Mende 34293 Montpellier Cedex 5 France
| | - Yohann Chemtob
- Centre d'Ecologie Fonctionnelle et Evolutive (CEFE), UMR 5175, CNRS, Université de Montpellier; Université Paul Valéry Montpellier; EPHE, 1919 route de Mende 34293 Montpellier Cedex 5 France
- Laboratoire Interdisciplinaire des Energies de Demain (LIED), UMR 8236; Université Paris Diderot; UFR Physique, Bâtiment Condorcet, 10 Rue A. Domon et L. Duquet 75205 Paris Cedex 13 France
| | - Tim Janicke
- Centre d'Ecologie Fonctionnelle et Evolutive (CEFE), UMR 5175, CNRS, Université de Montpellier; Université Paul Valéry Montpellier; EPHE, 1919 route de Mende 34293 Montpellier Cedex 5 France
| | - Violette Sarda
- Centre d'Ecologie Fonctionnelle et Evolutive (CEFE), UMR 5175, CNRS, Université de Montpellier; Université Paul Valéry Montpellier; EPHE, 1919 route de Mende 34293 Montpellier Cedex 5 France
| | - Benjamin Pélissié
- Centre d'Ecologie Fonctionnelle et Evolutive (CEFE), UMR 5175, CNRS, Université de Montpellier; Université Paul Valéry Montpellier; EPHE, 1919 route de Mende 34293 Montpellier Cedex 5 France
| | - Philippe Jarne
- Centre d'Ecologie Fonctionnelle et Evolutive (CEFE), UMR 5175, CNRS, Université de Montpellier; Université Paul Valéry Montpellier; EPHE, 1919 route de Mende 34293 Montpellier Cedex 5 France
| | - Patrice David
- Centre d'Ecologie Fonctionnelle et Evolutive (CEFE), UMR 5175, CNRS, Université de Montpellier; Université Paul Valéry Montpellier; EPHE, 1919 route de Mende 34293 Montpellier Cedex 5 France
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45
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Etterson JR, Franks SJ, Mazer SJ, Shaw RG, Gorden NLS, Schneider HE, Weber JJ, Winkler KJ, Weis AE. Project Baseline: An unprecedented resource to study plant evolution across space and time. AMERICAN JOURNAL OF BOTANY 2016; 103:164-173. [PMID: 26772308 DOI: 10.3732/ajb.1500313] [Citation(s) in RCA: 41] [Impact Index Per Article: 5.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/02/2015] [Accepted: 10/07/2015] [Indexed: 06/05/2023]
Abstract
PREMISE OF THE STUDY Project Baseline is a seed bank that offers an unprecedented opportunity to examine spatial and temporal dimensions of microevolution during an era of rapid environmental change. Over the upcoming 50 years, biologists will withdraw genetically representative samples of past populations from this time capsule of seeds and grow them contemporaneously with modern samples to detect any phenotypic and molecular evolution that has occurred during the intervening time. METHODS We carefully developed this living genome bank using protocols to enhance its experimental value by collecting from multiple populations and species across a broad geographical range in sites that are likely to be preserved into the future. Seeds are accessioned with site and population data and are stored by maternal line under conditions that maximize seed longevity. This open-access resource will be available to researchers at regular intervals to evaluate contemporary evolution. KEY RESULTS To date, the Project Baseline collection includes 100-200 maternal lines of each of 61 species collected from over 831 populations on sites that are likely to be preserved into the future across the United States (∼78,000 maternal lines). Our strategically designed collection circumvents some problems that can cloud the results of "resurrection" studies involving naturally preserved or existing seed collections that are available fortuitously. CONCLUSIONS The resurrection approach can be coupled with long-established and newer techniques over the next five decades to elucidate genetic change and thereby vastly improve our understanding of temporal and spatial changes in phenotype and the evolutionary processes underlying it.
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Affiliation(s)
- Julie R Etterson
- Department of Biology, University of Minnesota Duluth, 207A Swenson Science Building, 1035 Kirby Drive, Duluth, Minnesota 55812 USA
| | - Steven J Franks
- Department of Biological Sciences, 441 East Fordham Road, Fordham University, Bronx, New York 10458 USA
| | - Susan J Mazer
- Department of Ecology, Evolution & Marine Biology, University of California, Santa Barbara, Santa Barbara, California 93106 USA
| | - Ruth G Shaw
- Department of Ecology, Evolution and Behavior, 1479 Gortner Avenue, University of Minnesota Twin Cities, St. Paul, Minnesota 55108 USA
| | - Nicole L Soper Gorden
- Department of Biology, University of Minnesota Duluth, 207A Swenson Science Building, 1035 Kirby Drive, Duluth, Minnesota 55812 USA
| | - Heather E Schneider
- Department of Ecology, Evolution & Marine Biology, University of California, Santa Barbara, Santa Barbara, California 93106 USA
| | - Jennifer J Weber
- Department of Biological Sciences, 441 East Fordham Road, Fordham University, Bronx, New York 10458 USA
| | - Katharine J Winkler
- Department of Biology, University of Minnesota Duluth, 207A Swenson Science Building, 1035 Kirby Drive, Duluth, Minnesota 55812 USA
| | - Arthur E Weis
- Department of Ecology and Evolutionary Biology, and Koffler Scientific Reserve at Jokers Hill, 25 Willcocks Street, University of Toronto, Toronto, Ontario, Canada M5S 3B2
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