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Chen M, Yang J, Xue C, Tu T, Su Z, Feng H, Shi M, Zeng G, Zhang D, Qian X. Community composition of phytopathogenic fungi significantly influences ectomycorrhizal fungal communities during subtropical forest succession. Appl Microbiol Biotechnol 2024; 108:99. [PMID: 38204135 PMCID: PMC10781812 DOI: 10.1007/s00253-023-12992-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/27/2023] [Revised: 11/21/2023] [Accepted: 12/28/2023] [Indexed: 01/12/2024]
Abstract
Ectomycorrhizal fungi (EMF) can form symbiotic relationships with plants, aiding in plant growth by providing access to nutrients and defense against phytopathogenic fungi. In this context, factors such as plant assemblages and soil properties can impact the interaction between EMF and phytopathogenic fungi in forest soil. However, there is little understanding of how these fungal interactions evolve as forests move through succession stages. In this study, we used high-throughput sequencing to investigate fungal communities in young, intermediate, and old subtropical forests. At the genus level, EMF communities were dominated by Sebacina, Russula, and Lactarius, while Mycena was the most abundant genus in pathogenic fungal communities. The relative abundances of EMF and phytopathogenic fungi in different stages showed no significant difference with the regulation of different factors. We discovered that interactions between phytopathogenic fungi and EMF maintained a dynamic balance under the influence of the differences in soil quality attributed to each forest successional stage. The community composition of phytopathogenic fungi is one of the strong drivers in shaping EMF communities over successions. In addition, the EMF diversity was significantly related to plant diversity, and these relationships varied among successional stages. Despite the regulation of various factors, the positive relationship between the diversity of phytopathogenic fungi and EMF remained unchanged. However, there is no significant difference in the ratio of the abundance of EMF and phytopathogenic fungi over the course of successions. These results will advance our understanding of the biodiversity-ecosystem functioning during forest succession. KEY POINTS: •Community composition of both EMF and phytopathogenic fungi changed significantly over forest succession. •Phytopathogenic fungi is a key driver in shaping EMF community. •The effect of plant Shannon's diversity on EMF communities changed during the forest aging process.
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Affiliation(s)
- Meirong Chen
- Key Laboratory of Plant Resources Conservation and Sustainable Utilization, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou, China
- University of Chinese Academy of Sciences, Beijing, China
| | - Jiazhi Yang
- Guangdong Forestry Survey and Planning Institute, Guangzhou, China
| | - Chunquan Xue
- Guangdong Forestry Survey and Planning Institute, Guangzhou, China.
| | - Tieyao Tu
- Key Laboratory of Plant Resources Conservation and Sustainable Utilization, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou, China
| | - Zhiyao Su
- South China Agriculture University, Guangzhou, China
| | - Hanhua Feng
- Guangdong Forestry Survey and Planning Institute, Guangzhou, China
| | - Miaomiao Shi
- Key Laboratory of Plant Resources Conservation and Sustainable Utilization, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou, China
| | - Gui Zeng
- College of Life Sciences, China West Normal University, Nanchong, China
| | - Dianxiang Zhang
- Key Laboratory of Plant Resources Conservation and Sustainable Utilization, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou, China.
| | - Xin Qian
- College of Life Sciences, Fujian Agriculture and Forestry University, Fuzhou, Fujian, China.
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Zhang M, Shi Z, Wang F. Co-occurring tree species drive arbuscular mycorrhizal fungi diversity in tropical forest. Int Microbiol 2024; 27:917-928. [PMID: 37923942 DOI: 10.1007/s10123-023-00443-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/29/2023] [Revised: 08/24/2023] [Accepted: 10/27/2023] [Indexed: 11/06/2023]
Abstract
It is still uncertain whether environment or host plant species is more important in determining AMF diversity; although, plant roots are usually associated with abundant AMF species in different environments. This study explored the effect of plant species and environmental factors on AMF diversity based on three co-occurring tree species (Glochidion coccineum, Schefflera octophylla, and Schima superba) on six elevations of Mt. Jianfengling. A total of 185 OTUs (operational taxonomic units) of AMF were found in the three co-occurring dominant tree species. Of which 109 unique OTUs were identified in the three co-occurring plant species, which accounted for the total number of 58.92%. Forty-five OTUs were shared by the three co-occurring tree species, accounting for a total number of 24.32%. The plant species of Schefflera octophylla was identified as having the highest AMF diversity with the largest number of OTUs of 143. The fungi in the genus of Glomus were the dominant AMF species in the three co-occurring tree species. AMF communities and diversity are quite different, either within different plant species at the same elevation or within the same plant species at different elevations. However, the altitude had no significant effect on the ACE index. Therefore, the results suggest that plant species have a more important effect on AMF diversity and community composition.
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Affiliation(s)
- Mengge Zhang
- College of Agriculture, Henan University of Science and Technology, Luoyang, China
- Luoyang Key Laboratory of Symbiotic Microorganism and Green Development, Luoyang, China
| | - Zhaoyong Shi
- College of Agriculture, Henan University of Science and Technology, Luoyang, China.
- Luoyang Key Laboratory of Symbiotic Microorganism and Green Development, Luoyang, China.
| | - Fayuan Wang
- College of Environment and Safety Engineering, Qingdao University of Science and Technology, Qingdao, China
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Zhao X, Cui H, Song H, Chen J, Wang J, Liu Z, Ali I, Yang Z, Hou X, Zhou X, Xiao S, Chen S. Contrasting responses of α- and β-multifunctionality to aboveground plant community in the Qinghai-Tibet Plateau. THE SCIENCE OF THE TOTAL ENVIRONMENT 2024; 917:170464. [PMID: 38290671 DOI: 10.1016/j.scitotenv.2024.170464] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/03/2023] [Revised: 01/23/2024] [Accepted: 01/24/2024] [Indexed: 02/01/2024]
Abstract
The aboveground plant communities are crucial in driving ecosystem functioning, particularly being the primary producers in terrestrial ecosystems. Numerous studies have investigated the impacts of aboveground plant communities on multiple ecosystem functions at α-scale. However, such critical effects have been unexplored at β-scale and the comparative assessment of the effects and underlying mechanisms of aboveground plant communities on α- and β-multifunctionality has been lacking. In this study, we examined the effects of aboveground plant communities on soil multifunctionality both at α- and β-scale in the alpine meadow of the Tibetan Plateau. Additionally, we quantified the direct effects of aboveground plant communities, as well as the indirect effects mediated by changes in biotic and abiotic factors, on soil multifunctionality at both scales. Our findings revealed that: 1) Aboveground plant communities had significantly positive effects on α-multifunctionality whereas, β-multifunctionality was not affected significantly. 2) Aboveground plant communities directly influence α- and β-multifunctionality in contrasting ways, with positive and negative effects, respectively. Apart from the direct effects of plant community, we found that soil water content and bacterial β-diversity serving as the primary predictors for the responses of α- and β-multifunctionality to the presence of aboveground plant communities, respectively. And β-soil biodiversity appeared to be a stronger predictor of multifunctionality relative to α-soil biodiversity. Our findings provide novel insights into the drivers of ecosystem multifunctionality at different scales, highlight the importance of maintaining biodiversity at multiple scales and offer valuable knowledge for the maintenance of ecosystem functioning and the restoration of alpine meadow ecosystems.
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Affiliation(s)
- Xia Zhao
- Key Laboratory of Cell Activities and Stress Adaptations Ministry of Education, School of Life Sciences, Lanzhou University, Tianshui Road 222, Lanzhou, Gansu 730000, People's Republic of China; State Key Laboratory of Herbage Improvement and Grassland Agro-ecosystems, College of Ecology, Lanzhou University, Tianshui Road 222, Lanzhou, Gansu 730000, People's Republic of China
| | - Hanwen Cui
- State Key Laboratory of Herbage Improvement and Grassland Agro-ecosystems, College of Ecology, Lanzhou University, Tianshui Road 222, Lanzhou, Gansu 730000, People's Republic of China
| | - Hongxian Song
- Key Laboratory of Cell Activities and Stress Adaptations Ministry of Education, School of Life Sciences, Lanzhou University, Tianshui Road 222, Lanzhou, Gansu 730000, People's Republic of China
| | - Jingwei Chen
- State Key Laboratory of Herbage Improvement and Grassland Agro-ecosystems, College of Ecology, Lanzhou University, Tianshui Road 222, Lanzhou, Gansu 730000, People's Republic of China
| | - Jiajia Wang
- Key Laboratory of Cell Activities and Stress Adaptations Ministry of Education, School of Life Sciences, Lanzhou University, Tianshui Road 222, Lanzhou, Gansu 730000, People's Republic of China
| | - Ziyang Liu
- State Key Laboratory of Herbage Improvement and Grassland Agro-ecosystems, College of Ecology, Lanzhou University, Tianshui Road 222, Lanzhou, Gansu 730000, People's Republic of China
| | - Izhar Ali
- Key Laboratory of Cell Activities and Stress Adaptations Ministry of Education, School of Life Sciences, Lanzhou University, Tianshui Road 222, Lanzhou, Gansu 730000, People's Republic of China
| | - Zi Yang
- Key Laboratory of Cell Activities and Stress Adaptations Ministry of Education, School of Life Sciences, Lanzhou University, Tianshui Road 222, Lanzhou, Gansu 730000, People's Republic of China
| | - Xiao Hou
- Key Laboratory of Cell Activities and Stress Adaptations Ministry of Education, School of Life Sciences, Lanzhou University, Tianshui Road 222, Lanzhou, Gansu 730000, People's Republic of China
| | - Xianhui Zhou
- State Key Laboratory of Herbage Improvement and Grassland Agro-ecosystems, College of Ecology, Lanzhou University, Tianshui Road 222, Lanzhou, Gansu 730000, People's Republic of China
| | - Sa Xiao
- State Key Laboratory of Herbage Improvement and Grassland Agro-ecosystems, College of Ecology, Lanzhou University, Tianshui Road 222, Lanzhou, Gansu 730000, People's Republic of China
| | - Shuyan Chen
- Key Laboratory of Cell Activities and Stress Adaptations Ministry of Education, School of Life Sciences, Lanzhou University, Tianshui Road 222, Lanzhou, Gansu 730000, People's Republic of China.
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Cheng C, Liu Z, Zhang Q, Tian X, Ju R, Li B, van Kleunen M, Chase JM, Wu J. Genotype diversity enhances invasion resistance of native plants via soil biotic feedbacks. Ecol Lett 2024; 27:e14384. [PMID: 38426584 DOI: 10.1111/ele.14384] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/04/2023] [Revised: 01/22/2024] [Accepted: 01/24/2024] [Indexed: 03/02/2024]
Abstract
Although native species diversity is frequently reported to enhance invasion resistance, within-species diversity of native plants can also moderate invasions. While the positive diversity-invasion resistance relationship is often attributed to competition, indirect effects mediated through plant-soil feedbacks can also influence the relationship. We manipulated the genotypic diversity of an endemic species, Scirpus mariqueter, and evaluated the effects of abiotic versus biotic feedbacks on the performance of a global invader, Spartina alterniflora. We found that invader performance on live soils decreased non-additively with genotypic diversity of the native plant that trained the soils, but this reversed when soils were sterilized to eliminate feedbacks through soil biota. The influence of soil biota on the feedback was primarily associated with increased levels of microbial biomass and fungal diversity in soils trained by multiple-genotype populations. Our findings highlight the importance of plant-soil feedbacks mediating the positive relationship between genotypic diversity and invasion resistance.
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Affiliation(s)
- Cai Cheng
- National Observations and Research Station for Wetland Ecosystems of the Yangtze Estuary, Ministry of Education Key Laboratory for Biodiversity Science and Ecological Engineering, Institute of Biodiversity Science and Institute of Eco-Chongming, School of Life Sciences, Fudan University, Shanghai, China
| | - Zekang Liu
- National Observations and Research Station for Wetland Ecosystems of the Yangtze Estuary, Ministry of Education Key Laboratory for Biodiversity Science and Ecological Engineering, Institute of Biodiversity Science and Institute of Eco-Chongming, School of Life Sciences, Fudan University, Shanghai, China
| | - Qun Zhang
- Key Laboratory of National Forestry and Grassland Administration on Ecological Landscaping of Challenging Urban Sites, Shanghai Engineering Research Center of Landscaping on Challenging Urban Sites, Shanghai Academy of Landscape Architecture Science and Planning, Shanghai, China
| | - Xing Tian
- School of Ecology and Environment, Tibet University, Lhasa, China
| | - Ruiting Ju
- National Observations and Research Station for Wetland Ecosystems of the Yangtze Estuary, Ministry of Education Key Laboratory for Biodiversity Science and Ecological Engineering, Institute of Biodiversity Science and Institute of Eco-Chongming, School of Life Sciences, Fudan University, Shanghai, China
| | - Bo Li
- Ministry of Education Key Laboratory for Transboundary Ecosecurity of Southwest China, Yunnan Key Laboratory of Plant Reproductive Adaptation and Evolutionary Ecology and Centre for Invasion Biology, Institute of Biodiversity, School of Ecology and Environmental Science, Yunnan University, Kunming, China
| | - Mark van Kleunen
- Department of Biology, University of Konstanz, Konstanz, Germany
- Zhejiang Provincial Key Laboratory of Plant Evolutionary Ecology and Conservation, Taizhou University, Taizhou, China
| | - Jonathan M Chase
- German Centre for Integrative Biodiversity Research (iDiv), Halle-Jena-Leipzig, Germany
- Institute of Computer Science, Martin Luther University Halle-Wittenberg, Halle (Saale), Germany
| | - Jihua Wu
- State Key Laboratory of Herbage Improvement and Grassland Agro-Ecosystems, College of Ecology, Lanzhou University, Lanzhou, China
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Aqeel M, Khalid N, Noman A, Ran J, Manan A, Hou Q, Dong L, Sun Y, Deng Y, Lee SS, Hu W, Deng J. Interplay between edaphic and climatic factors unravels plant and microbial diversity along an altitudinal gradient. ENVIRONMENTAL RESEARCH 2024; 242:117711. [PMID: 37995997 DOI: 10.1016/j.envres.2023.117711] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/19/2023] [Revised: 11/03/2023] [Accepted: 11/15/2023] [Indexed: 11/25/2023]
Abstract
Altitude influences biodiversity and physiochemical soil attributes in terrestrial ecosystems. It is of immense importance to know the patterns of how interactions among climatic and edaphic factors influence plant and microbial diversity in various ecosystems, particularly along the gradients. We hypothesize that altitudinal variation determines the distribution of plant and microbial species as well as their interactions. To test the hypothesis, different sites with variable altitudes were selected. Analyses of edaphic factors revealed significant (p < 0.001) effects of the altitude. Soil ammonium and nitrate were strongly affected by it contrary to potassium (K), soil organic matter and carbon. The response patterns of individual taxonomic groups differed across the altitudinal gradient. Plant species and soil fungal diversity increased with increasing altitude, while soil archaeal and bacterial diversity decreased with increasing altitude. Plant species richness showed significant positive and negative interactions with edaphic and climatic factors. Fungal species richness was also significantly influenced by the soil ammonium, nitrate, available phosphorus, available potassium, electrical conductivity, and the pH of the soil, but showed non-significant interactions with other edaphic factors. Similarly, soil variables had limited impact on soil bacterial and archaeal species richness along the altitude gradient. Proteobacteria, Ascomycota, and Thaumarchaeota dominate soil bacterial, fungal, and archaeal communities, with relative abundance of 27.4%, 70.56%, and 81.55%, respectively. Additionally, Cynodon dactylon is most abundant plant species, comprising 22.33% of the recorded plant taxa in various study sites. RDA revealed that these communities influenced by certain edaphic and climatic factors, e.g., Actinobacteria strongly respond to MAT, EC, and C/N ratio, Ascomycota and Basidiomycota show strong associations with EC and MAP, respectively. Thaumarcheota are linked to pH, and OM, while Cyperus rotundus are sensitive to AI and EC. In conclusion, the observed variations in microbial as well as plant species richness and changes in soil properties at different elevations provide valuable insights into the factors determining ecosystem stability and multifunctionality in different regions.
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Affiliation(s)
- Muhammad Aqeel
- State Key Laboratory of Herbage Improvement and Grassland Agro-ecosystems (SKLHIGA), College of Ecology, Lanzhou University, 730000, Lanzhou, PR China
| | - Noreen Khalid
- Department of Botany, Government College Women University Sialkot, Pakistan
| | - Ali Noman
- Department of Botany, Government College University Faisalabad, Pakistan
| | - Jinzhi Ran
- State Key Laboratory of Herbage Improvement and Grassland Agro-ecosystems (SKLHIGA), College of Ecology, Lanzhou University, 730000, Lanzhou, PR China
| | - Abdul Manan
- State Key Laboratory of Herbage Improvement and Grassland Agro-ecosystems (SKLHIGA), College of Ecology, Lanzhou University, 730000, Lanzhou, PR China
| | - Qingqing Hou
- State Key Laboratory of Herbage Improvement and Grassland Agro-ecosystems (SKLHIGA), College of Ecology, Lanzhou University, 730000, Lanzhou, PR China
| | - Longwei Dong
- State Key Laboratory of Herbage Improvement and Grassland Agro-ecosystems (SKLHIGA), College of Ecology, Lanzhou University, 730000, Lanzhou, PR China
| | - Ying Sun
- State Key Laboratory of Herbage Improvement and Grassland Agro-ecosystems (SKLHIGA), College of Ecology, Lanzhou University, 730000, Lanzhou, PR China
| | - Yan Deng
- State Key Laboratory of Herbage Improvement and Grassland Agro-ecosystems (SKLHIGA), College of Ecology, Lanzhou University, 730000, Lanzhou, PR China
| | - Sang Soo Lee
- Department of Environmental and Energy Engineering, Yonsei University, Wonju, 26493, Republic of Korea
| | - Weigang Hu
- State Key Laboratory of Herbage Improvement and Grassland Agro-ecosystems (SKLHIGA), College of Ecology, Lanzhou University, 730000, Lanzhou, PR China.
| | - Jianming Deng
- State Key Laboratory of Herbage Improvement and Grassland Agro-ecosystems (SKLHIGA), College of Ecology, Lanzhou University, 730000, Lanzhou, PR China.
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Ju W, Fang L, Shen G, Delgado-Baquerizo M, Chen J, Zhou G, Ma D, Bing H, Liu L, Liu J, Jin X, Guo L, Tan W, Blagodatskaya E. New perspectives on microbiome and nutrient sequestration in soil aggregates during long-term grazing exclusion. GLOBAL CHANGE BIOLOGY 2024; 30:e17027. [PMID: 37946660 DOI: 10.1111/gcb.17027] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/07/2023] [Revised: 10/22/2023] [Accepted: 10/26/2023] [Indexed: 11/12/2023]
Abstract
Grazing exclusion alters grassland soil aggregation, microbiome composition, and biogeochemical processes. However, the long-term effects of grazing exclusion on the microbial communities and nutrient dynamics within soil aggregates remain unclear. We conducted a 36-year exclusion experiment to investigate how grazing exclusion affects the soil microbial community and the associated soil functions within soil aggregates in a semiarid grassland. Long-term (36 years) grazing exclusion induced a shift in microbial communities, especially in the <2 mm aggregates, from high to low diversity compared to the grazing control. The reduced microbial diversity was accompanied by instability of fungal communities, extended distribution of fungal pathogens to >2 mm aggregates, and reduced carbon (C) sequestration potential thus revealing a negative impact of long-term GE. In contrast, 11-26 years of grazing exclusion greatly increased C sequestration and promoted nutrient cycling in soil aggregates and associated microbial functional genes. Moreover, the environmental characteristics of microhabitats (e.g., soil pH) altered the soil microbiome and strongly contributed to C sequestration. Our findings reveal new evidence from soil microbiology for optimizing grazing exclusion duration to maintain multiple belowground ecosystem functions, providing promising suggestions for climate-smart and resource-efficient grasslands.
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Affiliation(s)
- Wenliang Ju
- State Key Laboratory of Soil Erosion and Dryland Farming on the Loess Plateau, Institute of Soil and Water Conservation, Chinese Academy of Sciences, Ministry of Water Resources, Yangling, China
- School of Environment, Tsinghua University, Beijing, China
| | - Linchuan Fang
- State Key Laboratory of Soil Erosion and Dryland Farming on the Loess Plateau, Institute of Soil and Water Conservation, Chinese Academy of Sciences, Ministry of Water Resources, Yangling, China
- Key Laboratory of Green Utilization of Critical Non-metallic Mineral Resources, Ministry of Education, Wuhan University of Technology, Wuhan, China
| | - Guoting Shen
- Department of Soil Ecology, Helmholtz Centre for Environmental Research - UFZ, Halle (Saale), Germany
| | - Manuel Delgado-Baquerizo
- Laboratorio de Biodiversidad y Funcionamiento Ecosistemico, Instituto de Recursos Naturales y Agrobiología de Sevilla (IRNAS), CSIC, Sevilla, Spain
- Unidad Asociada CSIC-UPO (BioFun), Universidad Pablo de Olavide, Sevilla, Spain
| | - Ji Chen
- State Key Laboratory of Loess and Quaternary Geology, Institute of Earth Environment, Chinese Academy of Sciences, Xi'an, China
- Department of Agroecology, Aarhus University, Tjele, Denmark
| | - Guiyao Zhou
- Laboratorio de Biodiversidad y Funcionamiento Ecosistemico, Instituto de Recursos Naturales y Agrobiología de Sevilla (IRNAS), CSIC, Sevilla, Spain
- Unidad Asociada CSIC-UPO (BioFun), Universidad Pablo de Olavide, Sevilla, Spain
| | - Dengke Ma
- State Key Laboratory of Soil Erosion and Dryland Farming on the Loess Plateau, Institute of Soil and Water Conservation, Chinese Academy of Sciences, Ministry of Water Resources, Yangling, China
| | - Haijian Bing
- Key Laboratory of Mountain Surface Processes and Ecological Regulation, Institute of Mountain Hazards and Environment, Chinese Academy of Sciences, Chengdu, China
| | - Lei Liu
- Department of Medical Microbiology and Infection Prevention, University of Groningen, University Medical Center Groningen, Groningen, the Netherlands
| | - Ji Liu
- Hubei Province Key Laboratory for Geographical Process Analysis and Simulation, Central China Normal University, Wuhan, China
| | - Xiaolian Jin
- State Key Laboratory of Soil Erosion and Dryland Farming on the Loess Plateau, Institute of Soil and Water Conservation, Chinese Academy of Sciences, Ministry of Water Resources, Yangling, China
| | - Liang Guo
- State Key Laboratory of Soil Erosion and Dryland Farming on the Loess Plateau, Institute of Soil and Water Conservation, Chinese Academy of Sciences, Ministry of Water Resources, Yangling, China
| | - Wenfeng Tan
- College of Resources and Environment, Huazhong Agricultural University, Wuhan, China
| | - Evgenia Blagodatskaya
- Department of Soil Ecology, Helmholtz Centre for Environmental Research - UFZ, Halle (Saale), Germany
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Wang K, Wang Y, Wen H, Zhang X, Yu J, Wang Q, Han S, Wang W. Biomass carbon sink stability of conifer and broadleaf boreal forests: differently associated with plant diversity and mycorrhizal symbionts? ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2023; 30:115337-115359. [PMID: 37882924 DOI: 10.1007/s11356-023-30445-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/22/2022] [Accepted: 10/09/2023] [Indexed: 10/27/2023]
Abstract
Forest biomass carbon stability is crucial in achieving carbon neutrality in the high-latitude northern hemisphere, and identifying the differences among forest types and decoupling their associations with plant traits and geoclimatic conditions is the basis for precise forest management. We conducted a large-scale field survey in state-owned forest areas in northeastern China, covering a total of 280,000 km2 forest area, 1275 arbor plots (30 m × 30 m), 5285 shrub plots (5 m × 5 m), and 7076 herb plots (1 m × 1 m). We hypothesized that the conifer and broadleaf forest differences in biomass carbon (C) storage and stability (environmental stability to climatic changes-ES and recalcitrant stability to be decomposed-RS) are associated with mycorrhizal abundance (EcM: ectomycorrhizal, AM: arbuscular mycorrhizal, NM-AM: non-mycorrhizal or arbuscular mycorrhizal), taxon diversity traits (richness, Simpson, Shannon-Wiener, and evenness), and structural differences (diameter, height, and density) in the arbor, shrub, and herb layers. Our results showed that (1) conifer forests had 13.1 Mg/ha higher C stocks and 30.9% higher RS, but 8.6% lower ES than broadleaf forests (p < 0.05). Trees in conifer forests had 1.5 m taller and 2.4 cm thicker trees, but 15% less tree density than those in broadleaf forests. Herbs in conifer forests were 14% shorter and 57% denser than in broadleaf forests. (2) The abundance of EcM-symbiont trees in conifer forests was 15% higher than in broadleaf forests, while their EcM-symbiont shrubs and AM-symbiont herbs were 5-6% lower (p < 0.05). Broadleaf forests had 7% higher tree richness and 19% higher herb richness but 9% lower shrub richness than conifer forests (p < 0.05). Tree and herb evenness was 5-6% higher in conifer forests (p < 0.05). (3) Variations of biomass C sink traits could be explained more by plant diversity in conifer forests (7%) than in broadleaf forests (3.4%). Mycorrhizal symbionts could explain more in broadleaf forests (9.7%) than conifer forests (6.7%). In conifer forests, fewer EcM trees (higher AM trees) and AM herbs, higher tree richness were accompanied by higher biomass C storage and ES. Broadleaf forests underwent similar changes, characterized by an elevation in both RS and ES. (4) Our research emphasized that variations in carbon sequestration between conifer and broadleaf forests could be attributed to mycorrhizal symbionts and species diversity besides tree size-related structural differences. Our findings support the precise management of boreal forests to achieve carbon neutrality based on leaf blade types, plant diversity, and mycorrhizal symbionts.
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Affiliation(s)
- Kai Wang
- Northeast Institute of Geography and Agroecology, Chinese Academy of Sciences, Changchun, 130102, China
- University of Chinese Academy of Sciences, Beijing, 100049, China
| | - Yuanyuan Wang
- Northeast Institute of Geography and Agroecology, Chinese Academy of Sciences, Changchun, 130102, China
| | - Hui Wen
- Key Laboratory of Forest Plant Ecology (MOE), College of Chemistry, Chemical Engineering and Resource Utilization, Northeast Forestry University, Harbin, 150040, China
| | - Xiting Zhang
- Key Laboratory of Forest Plant Ecology (MOE), College of Chemistry, Chemical Engineering and Resource Utilization, Northeast Forestry University, Harbin, 150040, China
| | - Jinghua Yu
- Institute of Applied Ecology, Chinese Academy of Sciences, Shenyang, 110016, China
| | - Qinggui Wang
- College of Life Science, Qufu Normal University, Qufu, 273165, China
| | - Shijie Han
- College of Life Science, Henan University, Kaifeng, 475004, China
| | - Wenjie Wang
- Northeast Institute of Geography and Agroecology, Chinese Academy of Sciences, Changchun, 130102, China.
- State Key Laboratory of Subtropical Silviculture, College of Forestry and Biotechnology, Zhejiang A&F University, Hangzhou, 311300, Zhejiang, China.
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8
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Yuan ML, Zhang MH, Shi ZY, Yang S, Zhang MG, Wang Z, Wu SW, Gao JK. Arbuscular mycorrhizal fungi enhance active ingredients of medicinal plants: a quantitative analysis. FRONTIERS IN PLANT SCIENCE 2023; 14:1276918. [PMID: 37929165 PMCID: PMC10623335 DOI: 10.3389/fpls.2023.1276918] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 08/13/2023] [Accepted: 09/22/2023] [Indexed: 11/07/2023]
Abstract
Medicinal plants are invaluable resources for mankind and play a crucial role in combating diseases. Arbuscular mycorrhizal fungi (AMF) are widely recognized for enhancing the production of medicinal active ingredients in medicinal plants. However, there is still a lack of comprehensive understanding regarding the quantitative effects of AMF on the accumulation of medicinal active ingredients. Here we conducted a comprehensive global analysis using 233 paired observations to investigate the impact of AMF inoculation on the accumulation of medicinal active ingredients. This study revealed that AMF inoculation significantly increased the contents of medicinal active ingredients by 27%, with a particularly notable enhancement observed in flavonoids (68%) and terpenoids (53%). Furthermore, the response of medicinal active ingredients in belowground organs (32%) to AMF was more pronounced than that in aboveground organs (18%). Notably, the AMF genus Rhizophagus exhibited the strongest effect in improving the contents of medicinal active ingredients, resulting in an increase of over 50% in both aboveground and belowground organs. Additionally, the promotion of medicinal active ingredients by AMF was attributed to improvements in physiological factors, such as chlorophyll, stomatal conductance and net photosynthetic rate. Collectively, this research substantially advanced our comprehension of the pivotal role of AMF in improving the medicinal active ingredients of plants and provided valuable insights into the potential mechanisms driving these enhancements.
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Affiliation(s)
- Ming-Li Yuan
- College of Agriculture, Henan University of Science and Technology, Luoyang, Henan, China
- School of Agriculture and Animal Husbandry Engineering, Zhoukou Vocational and Technical College, Henan, China
| | - Meng-Han Zhang
- College of Agriculture, Henan University of Science and Technology, Luoyang, Henan, China
- Henan Engineering Research Center for Rural Human Settlement, Luoyang, Henan, China
- Luoyang Key Laboratory of Symbiotic Microorganism and Green Development, Luoyang, Henan, China
| | - Zhao-Yong Shi
- College of Agriculture, Henan University of Science and Technology, Luoyang, Henan, China
- Henan Engineering Research Center for Rural Human Settlement, Luoyang, Henan, China
- Luoyang Key Laboratory of Symbiotic Microorganism and Green Development, Luoyang, Henan, China
| | - Shuang Yang
- College of Agriculture, Henan University of Science and Technology, Luoyang, Henan, China
- Henan Engineering Research Center for Rural Human Settlement, Luoyang, Henan, China
- Luoyang Key Laboratory of Symbiotic Microorganism and Green Development, Luoyang, Henan, China
| | - Meng-Ge Zhang
- College of Agriculture, Henan University of Science and Technology, Luoyang, Henan, China
- Henan Engineering Research Center for Rural Human Settlement, Luoyang, Henan, China
- Luoyang Key Laboratory of Symbiotic Microorganism and Green Development, Luoyang, Henan, China
| | - Zhen Wang
- College of Agriculture, Henan University of Science and Technology, Luoyang, Henan, China
- Henan Engineering Research Center for Rural Human Settlement, Luoyang, Henan, China
- Luoyang Key Laboratory of Symbiotic Microorganism and Green Development, Luoyang, Henan, China
| | - Shan-Wei Wu
- College of Agriculture, Henan University of Science and Technology, Luoyang, Henan, China
- Henan Engineering Research Center for Rural Human Settlement, Luoyang, Henan, China
- Luoyang Key Laboratory of Symbiotic Microorganism and Green Development, Luoyang, Henan, China
| | - Jia-Kai Gao
- College of Agriculture, Henan University of Science and Technology, Luoyang, Henan, China
- Henan Engineering Research Center for Rural Human Settlement, Luoyang, Henan, China
- Luoyang Key Laboratory of Symbiotic Microorganism and Green Development, Luoyang, Henan, China
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9
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Hiiesalu I, Schweichhart J, Angel R, Davison J, Doležal J, Kopecký M, Macek M, Řehakova K. Plant-symbiotic fungal diversity tracks variation in vegetation and the abiotic environment along an extended elevational gradient in the Himalayas. FEMS Microbiol Ecol 2023; 99:fiad092. [PMID: 37562924 DOI: 10.1093/femsec/fiad092] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/03/2023] [Revised: 05/30/2023] [Accepted: 08/07/2023] [Indexed: 08/12/2023] Open
Abstract
Arbuscular mycorrhizal (AM) fungi can benefit plants under environmental stress, and influence plant adaptation to warmer climates. However, very little is known about the ecology of these fungi in alpine environments. We sampled plant roots along a large fraction (1941-6150 m asl (above sea level)) of the longest terrestrial elevational gradient on Earth and used DNA metabarcoding to identify AM fungi. We hypothesized that AM fungal alpha and beta diversity decreases with increasing elevation, and that different vegetation types comprise dissimilar communities, with cultured (putatively ruderal) taxa increasingly represented at high elevations. We found that the alpha diversity of AM fungal communities declined linearly with elevation, whereas within-site taxon turnover (beta diversity) was unimodally related to elevation. The composition of AM fungal communities differed between vegetation types and was influenced by elevation, mean annual temperature, and precipitation. In general, Glomeraceae taxa dominated at all elevations and vegetation types; however, higher elevations were associated with increased presence of Acaulosporaceae, Ambisporaceae, and Claroideoglomeraceae. Contrary to our expectation, the proportion of cultured AM fungal taxa in communities decreased with elevation. These results suggest that, in this system, climate-induced shifts in habitat conditions may facilitate more diverse AM fungal communities at higher elevations but could also favour ruderal taxa.
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Affiliation(s)
- Inga Hiiesalu
- Institute of Ecology and Earth Sciences, University of Tartu, J. Liivi 2, 50 409 Tartu, Estonia
| | - Johannes Schweichhart
- Biology Centre of the CAS, Institute of Soil Biology and Biochemistry, Na Sádkách 702/7 , 370 05 České Budějovice, Czech Republic
- Faculty of Science, University of South Bohemia, Branišovská 1160/31, 370 05 České Budějovice, Czech Republic
| | - Roey Angel
- Biology Centre of the CAS, Institute of Soil Biology and Biochemistry, Na Sádkách 702/7 , 370 05 České Budějovice, Czech Republic
| | - John Davison
- Institute of Ecology and Earth Sciences, University of Tartu, J. Liivi 2, 50 409 Tartu, Estonia
| | - Jiři Doležal
- Institute of Botany of the CAS, Dukelská 135, 379 01 Třeboň, Czech Republic
- Faculty of Science, University of South Bohemia, Branišovská 1160/31, 370 05 České Budějovice, Czech Republic
| | - Martin Kopecký
- Institute of Botany of the CAS, Zámek 1, 252 43 Průhonice, Czech Republic
- Faculty of Forestry and Wood Sciences, Czech University of Life Sciences Prague, Kamýcká 129, 165 21, Praha 6, Czech Republic
| | - Martin Macek
- Institute of Botany of the CAS, Zámek 1, 252 43 Průhonice, Czech Republic
| | - Klára Řehakova
- Biology Centre of the CAS, Institute of Hydrobiology, Na Sádkách 702/7, 370 05 České Budějovice, Czech Republic
- Institute of Botany of the CAS, Dukelská 135, 379 01 Třeboň, Czech Republic
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10
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Lentendu G, Bruni EP, Ah-Peng C, Fujinuma J, Kubota Y, Lorite J, Peñas J, Huang S, Strasberg D, Vittoz P, Mitchell EAD. Soil filtration-sedimentation improves shelled protist recovery in eukaryotic eDNA surveys. Mol Ecol Resour 2023; 23:1361-1371. [PMID: 37157180 DOI: 10.1111/1755-0998.13808] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/20/2022] [Revised: 04/03/2023] [Accepted: 04/26/2023] [Indexed: 05/10/2023]
Abstract
A large part of the soil protist diversity is missed in metabarcoding studies based on 0.25 g of soil environmental DNA (eDNA) and universal primers due to ca. 80% co-amplification of non-target plants, animals and fungi. To overcome this problem, enrichment of the substrate used for eDNA extraction is an easily implemented option but its effect has not yet been tested. In this study, we evaluated the effect of a 150 μm mesh size filtration and sedimentation method to improve the recovery of protist eDNA, while reducing the co-extraction of plant, animal and fungal eDNA, using a set of contrasted forest and alpine soils from La Réunion, Japan, Spain and Switzerland. Total eukaryotic diversity was estimated by V4 18S rRNA metabarcoding and classical amplicon sequence variant calling. A 2- to 3-fold enrichment in shelled protists (Euglyphida, Arcellinida and Chrysophyceae) was observed at the sample level with the proposed method, with, at the same time, a 2-fold depletion of Fungi and a 3-fold depletion of Embryophyceae. Protist alpha diversity was slightly lower in filtered samples due to reduced coverage in Variosea and Sarcomonadea, but significant differences were observed in only one region. Beta diversity varied mostly between regions and habitats, which explained the same proportion of variance in bulk soil and filtered samples. The increased resolution in soil protist diversity estimates provided by the filtration-sedimentation method is a strong argument in favour of including it in the standard protocol for soil protist eDNA metabarcoding studies.
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Affiliation(s)
- Guillaume Lentendu
- Laboratory of Soil Biodiversity, University of Neuchâtel, Neuchâtel, Switzerland
| | - Estelle P Bruni
- Laboratory of Soil Biodiversity, University of Neuchâtel, Neuchâtel, Switzerland
| | | | - Junichi Fujinuma
- Institute of Ecology and Earth Sciences, University of Tartu, Tartu, Estonia
| | - Yasuhiro Kubota
- Laboratory of Biodiversity and Conservation Biogeography, Faculty of Science, University of the Ryukyus, Nishihara, Japan
| | - Juan Lorite
- Department of Botany, University of Granada, Granada, Spain
- Interuniversity Institute for Earth System Research, University of Granada, Granada, Spain
| | - Julio Peñas
- Department of Botany, University of Granada, Granada, Spain
| | - Shuyin Huang
- Laboratory of Biodiversity and Conservation Biogeography, Faculty of Science, University of the Ryukyus, Nishihara, Japan
| | | | - Pascal Vittoz
- Institute of Earth Surface Dynamics, Faculty of Geosciences and Environment, University of Lausanne, Lausanne, Switzerland
| | - Edward A D Mitchell
- Laboratory of Soil Biodiversity, University of Neuchâtel, Neuchâtel, Switzerland
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11
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Noceto PA, Durney C, van Tuinen D, de Sousa J, Wipf D, Courty PE. Arbuscular mycorrhizal fungal communities differ in neighboring vineyards of different ages. MYCORRHIZA 2023; 33:241-248. [PMID: 37450046 DOI: 10.1007/s00572-023-01117-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/16/2023] [Accepted: 06/16/2023] [Indexed: 07/18/2023]
Abstract
Arbuscular mycorrhizal fungi (AMF) are key organisms in viticultural ecosystems as they provide many ecosystem services to soils and plants. Data about AMF community dynamics over time are relatively scarce and at short time scales. Many factors such as the soil, climate, and agricultural practices could modify the dynamics and functions of microbial communities. However, the effects on microbial communities of plant phenology and changes in plant physiology over time largely have been overlooked. We analyzed the diversity of AMF in three geographically close vineyards with similar soil parameters for 2 years. The plots differed in grapevine age (11, 36, and 110 years), but had the same soil management practice (horse tillage). Diversity analyses revealed a difference in the composition of AMF communities between the soil and grapevine roots and among roots of grapevines of different ages. This underlines AMF adaptation to physiological changes in the host which can explain the development of different AMF communities. The dynamics of AMF communities can highlight their resilience to environmental changes and agricultural practices.
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Affiliation(s)
- Pierre-Antoine Noceto
- Agroécologie, INRAE, Institut Agro, Univ. Bourgogne, Univ. Bourgogne Franche-Comté, 21000, Dijon, France
| | - Célien Durney
- Agroécologie, INRAE, Institut Agro, Univ. Bourgogne, Univ. Bourgogne Franche-Comté, 21000, Dijon, France
| | - Diederik van Tuinen
- Agroécologie, INRAE, Institut Agro, Univ. Bourgogne, Univ. Bourgogne Franche-Comté, 21000, Dijon, France
| | | | - Daniel Wipf
- Agroécologie, INRAE, Institut Agro, Univ. Bourgogne, Univ. Bourgogne Franche-Comté, 21000, Dijon, France
| | - Pierre-Emmanuel Courty
- Agroécologie, INRAE, Institut Agro, Univ. Bourgogne, Univ. Bourgogne Franche-Comté, 21000, Dijon, France.
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12
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Maciá-Vicente JG, Francioli D, Weigelt A, Albracht C, Barry KE, Buscot F, Ebeling A, Eisenhauer N, Hennecke J, Heintz-Buschart A, van Ruijven J, Mommer L. The structure of root-associated fungal communities is related to the long-term effects of plant diversity on productivity. Mol Ecol 2023. [PMID: 37081579 DOI: 10.1111/mec.16956] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/24/2023] [Revised: 04/07/2023] [Accepted: 04/12/2023] [Indexed: 04/22/2023]
Abstract
Root-associated fungi could play a role in determining both the positive relationship between plant diversity and productivity in experimental grasslands, and its strengthening over time. This hypothesis assumes that specialized pathogenic and mutualistic fungal communities gradually assemble over time, enhancing plant growth more in species-rich than in species-poor plots. To test this hypothesis, we used high-throughput amplicon sequencing to characterize root-associated fungal communities in experimental grasslands of 1 and 15 years of age with varying levels of plant species richness. Specifically, we tested whether the relationship between fungal communities and plant richness and productivity becomes stronger with the age of the experimental plots. Our results showed that fungal diversity increased with plant diversity, but this relationship weakened rather than strengthened over the two time points. Contrastingly, fungal community composition showed increasing associations with plant diversity over time, suggesting a gradual build-up of specific fungal assemblages. Analyses of different fungal guilds showed that these changes were particularly marked in pathogenic fungi, whose shifts in relative abundance are consistent with the pathogen dilution hypothesis in diverse plant communities. Our results suggest that root-associated fungal pathogens play more specific roles in determining the diversity-productivity relationship than other root-associated plant symbionts.
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Affiliation(s)
- Jose G Maciá-Vicente
- Plant Ecology and Nature Conservation, Wageningen University & Research, Wageningen, The Netherlands
| | - Davide Francioli
- Department of Nutritional Crop Physiology, Institute of Crop Science, University of Hohenheim, Stuttgart, Germany
| | - Alexandra Weigelt
- Institute of Biology, Leipzig University, Leipzig, Germany
- German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig, Leipzig, Germany
| | - Cynthia Albracht
- Swammerdam Institute for Life Sciences, University of Amsterdam, Amsterdam, The Netherlands
| | - Kathryn E Barry
- Ecology and Biodiversity, Department of Biology, Utrecht University, Utrecht, The Netherlands
| | - François Buscot
- German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig, Leipzig, Germany
- Soil Ecology Department, Helmholtz Center for Environmental Research (UFZ), Halle (Saale), Germany
| | - Anne Ebeling
- Institute of Ecology and Evolution, Friedrich-Schiller-University Jena, Jena, Germany
| | - Nico Eisenhauer
- German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig, Leipzig, Germany
- Institute of Ecology and Evolution, Friedrich-Schiller-University Jena, Jena, Germany
| | - Justus Hennecke
- Institute of Biology, Leipzig University, Leipzig, Germany
- German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig, Leipzig, Germany
| | - Anna Heintz-Buschart
- Swammerdam Institute for Life Sciences, University of Amsterdam, Amsterdam, The Netherlands
| | - Jasper van Ruijven
- Plant Ecology and Nature Conservation, Wageningen University & Research, Wageningen, The Netherlands
| | - Liesje Mommer
- Plant Ecology and Nature Conservation, Wageningen University & Research, Wageningen, The Netherlands
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13
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Chen K, Zhang J, Muneer MA, Xue K, Niu H, Ji B. Plant community and soil available nutrients drive arbuscular mycorrhizal fungal community shifts during alpine meadow degradation. FUNGAL ECOL 2023. [DOI: 10.1016/j.funeco.2022.101211] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/03/2022]
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14
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Plant Community Associates with Rare Rather than Abundant Fungal Taxa in Alpine Grassland Soils. Appl Environ Microbiol 2023; 89:e0186222. [PMID: 36602328 PMCID: PMC9888191 DOI: 10.1128/aem.01862-22] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/06/2023] Open
Abstract
The importance of the rare microbial biosphere in maintaining biodiversity and ecological functions has been highlighted recently. However, the current understanding of the spatial distribution of rare microbial taxa is still limited, with only a few investigations for rare prokaryotes and virtually none for rare fungi. Here, we investigated the spatial patterns of rare and abundant fungal taxa in alpine grassland soils across 2,000 km of the Qinghai-Tibetan plateau. We found that most locally rare fungal taxa remained rare (13.07%) or were absent (82.85%) in other sites, whereas only a small proportion (4.06%) shifted between rare and abundant among sites. Although they differed in terms of diversity levels and compositions, the distance decay relationships of both the rare and the abundant fungal taxa were valid and displayed similar turnover rates. Moreover, the community assemblies of both rare and abundant fungal taxa were predominantly controlled by deterministic rather than stochastic processes. Notably, the community composition of rare rather than abundant fungal taxa associated with the plant community composition. In summary, this study advances our understanding of the biogeographic features of rare fungal taxa in alpine grasslands and highlights the concordance between plant communities and rare fungal subcommunities in soil. IMPORTANCE Our current understanding of the ecology and functions of rare microbial taxa largely relies on research conducted on prokaryotes. Despite the key ecological roles of soil fungi, little is known about the biogeographic patterns and drivers of rare and abundant fungi in soils. In this study, we investigated the spatial patterns of rare and abundant fungal taxa in Qinghai-Tibetan plateau (QTP) alpine grassland soils across 2,000 km, with a special concentration on the importance of the plant communities in shaping rare fungal taxa. We showed that rare fungal taxa generally had a biogeographic pattern that was similar to that of abundant fungal taxa in alpine grassland soils on the QTP. Furthermore, the plant community composition was strongly related to the community composition of rare taxa but not abundant taxa. In summary, this study significantly increases our biogeographic and ecological knowledge of rare fungal taxa in alpine grassland soils.
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15
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Liu Z, Fang J, Song B, Yang Y, Yu Z, Hu J, Dong K, Takahashi K, Adams JM. Stochastic processes dominate soil arbuscular mycorrhizal fungal community assembly along an elevation gradient in central Japan. THE SCIENCE OF THE TOTAL ENVIRONMENT 2023; 855:158941. [PMID: 36152859 DOI: 10.1016/j.scitotenv.2022.158941] [Citation(s) in RCA: 4] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/08/2022] [Revised: 09/18/2022] [Accepted: 09/18/2022] [Indexed: 06/16/2023]
Abstract
Arbuscular mycorrhizal (AM) fungi play an important role in facilitating ecosystem function and stability. Yet, their community response patterns and ecological assembly processes along elevational gradients which cross a range of climates and soil conditions remain elusive. We used Illumina MiSeq sequencing to examine trends in soil AM fungal community along an elevational gradient from 100 m to 2300 m in central Japan. A total of 750 operational taxonomic units (OTUs) affiliated to 12 AM fungal genera were identified from soil samples, and the AM fungal community composition differed strongly with elevation, with variance explained more by climate, followed by soil and plant factors. The AM fungal α-diversity, network connectivity and complexity between AM fungal taxa and also with plant communities all exhibited a maximum at the mid-elevation of 800 m and then declined, principally influenced by soil pH and precipitation. Stochastic processes dominated AM fungal community assembly across the whole elevation gradient, with homogenizing dispersal being the main process. Only when AM fungal communities were contrasted across a relatively broad range of elevations, did variable selection (deterministic process) became significant, and even then in a mixed role with stochasticity. While OTUs of AM fungi are clearly adapted to particular environmental ranges, stochasticity due to rapid dispersal has a major role in determining their occurrence, suggesting that AM fungi may possess generalized and interchangeable niches, and can adjust their distribution rapidly - at least on the scale of a single mountain. This finding emphasizes that the roles of AM fungi in plant ecology may be non-specific and easily substituted, and furthermore that there is rapid local scale dispersal, which may allow plants to maintain effective AM associations under environmental change.
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Affiliation(s)
- Zihao Liu
- School of Geography and Oceanography, Nanjing University, Nanjing, China
| | - Jie Fang
- School of Geography and Oceanography, Nanjing University, Nanjing, China
| | - Bin Song
- School of Geography and Oceanography, Nanjing University, Nanjing, China
| | - Ying Yang
- School of Geography and Oceanography, Nanjing University, Nanjing, China
| | - Zhi Yu
- Department of Integrative Biotechnology, Sungkyunkwan University, Suwon, South Korea
| | - Junli Hu
- State Key Laboratory of Soil and Sustainable Agriculture, Institute of Soil Science, Chinese Academy of Sciences, Nanjing, China
| | - Ke Dong
- Life Science Major, Kyonggi University, Suwon, South Korea.
| | - Koichi Takahashi
- Department of Biological Sciences, Shinshu University, Matsumoto, Japan.
| | - Jonathan M Adams
- School of Geography and Oceanography, Nanjing University, Nanjing, China.
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16
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Vasar M, Davison J, Moora M, Sepp SK, Anslan S, Al-Quraishy S, Bahram M, Bueno CG, Cantero JJ, Fabiano EC, Decocq G, Drenkhan R, Fraser L, Oja J, Garibay-Orijel R, Hiiesalu I, Koorem K, Mucina L, Öpik M, Põlme S, Pärtel M, Phosri C, Semchenko M, Vahter T, Doležal J, Palacios AMV, Tedersoo L, Zobel M. Metabarcoding of soil environmental DNA to estimate plant diversity globally. FRONTIERS IN PLANT SCIENCE 2023; 14:1106617. [PMID: 37143888 PMCID: PMC10151745 DOI: 10.3389/fpls.2023.1106617] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 11/24/2022] [Accepted: 04/03/2023] [Indexed: 05/06/2023]
Abstract
Introduction Traditional approaches to collecting large-scale biodiversity data pose huge logistical and technical challenges. We aimed to assess how a comparatively simple method based on sequencing environmental DNA (eDNA) characterises global variation in plant diversity and community composition compared with data derived from traditional plant inventory methods. Methods We sequenced a short fragment (P6 loop) of the chloroplast trnL intron from from 325 globally distributed soil samples and compared estimates of diversity and composition with those derived from traditional sources based on empirical (GBIF) or extrapolated plant distribution and diversity data. Results Large-scale plant diversity and community composition patterns revealed by sequencing eDNA were broadly in accordance with those derived from traditional sources. The success of the eDNA taxonomy assignment, and the overlap of taxon lists between eDNA and GBIF, was greatest at moderate to high latitudes of the northern hemisphere. On average, around half (mean: 51.5% SD 17.6) of local GBIF records were represented in eDNA databases at the species level, depending on the geographic region. Discussion eDNA trnL gene sequencing data accurately represent global patterns in plant diversity and composition and thus can provide a basis for large-scale vegetation studies. Important experimental considerations for plant eDNA studies include using a sampling volume and design to maximise the number of taxa detected and optimising the sequencing depth. However, increasing the coverage of reference sequence databases would yield the most significant improvements in the accuracy of taxonomic assignments made using the P6 loop of the trnL region.
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Affiliation(s)
- Martti Vasar
- Institute of Ecology and Earth Sciences, University of Tartu, Tartu, Estonia
- *Correspondence: Martti Vasar,
| | - John Davison
- Institute of Ecology and Earth Sciences, University of Tartu, Tartu, Estonia
| | - Mari Moora
- Institute of Ecology and Earth Sciences, University of Tartu, Tartu, Estonia
| | - Siim-Kaarel Sepp
- Institute of Ecology and Earth Sciences, University of Tartu, Tartu, Estonia
| | - Sten Anslan
- Institute of Ecology and Earth Sciences, University of Tartu, Tartu, Estonia
| | - Saleh Al-Quraishy
- Zoology Department, College of Science, King Saud University, Riyadh, Saudi Arabia
| | - Mohammad Bahram
- Institute of Ecology and Earth Sciences, University of Tartu, Tartu, Estonia
- Department of Ecology, Swedish University of Agricultural Sciences, Uppsala, Sweden
| | - C. Guillermo Bueno
- Institute of Ecology and Earth Sciences, University of Tartu, Tartu, Estonia
| | - Juan José Cantero
- Instituto Multidisciplinario de Biología Vegetal, Universidad Nacional de Córdoba, CONICET, Córdoba, Argentina
- Departamento de Biología Agrícola, Facultad de Agronomía y Veterinaria, Universidad Nacional de Río Cuarto, Córdoba, Argentina
| | | | - Guillaume Decocq
- Ecologie et Dynamique des Systèmes Anthropisés (EDYSAN, UMR CNRS 7058), Jules Verne, University of Picardie, Amiens, France
| | - Rein Drenkhan
- Institute of Forestry and Engineering, Estonian University of Life Sciences, Tartu, Estonia
| | - Lauchlan Fraser
- Department of Natural Resource Sciences, Thompson Rivers University, Kamloops, BC, Canada
| | - Jane Oja
- Institute of Ecology and Earth Sciences, University of Tartu, Tartu, Estonia
| | - Roberto Garibay-Orijel
- Instituto de Biología, Universidad Nacional Autónoma de México, Ciudad de México, Mexico
| | - Inga Hiiesalu
- Institute of Ecology and Earth Sciences, University of Tartu, Tartu, Estonia
| | - Kadri Koorem
- Institute of Ecology and Earth Sciences, University of Tartu, Tartu, Estonia
| | - Ladislav Mucina
- Iluka Chair in Vegetation Science and Biogeography, Harry Butler Institute, Murdoch University, Perth, WA, Australia
- Department of Geography & Environmental Studies, Stellenbosch University, Stellenbosch, South Africa
| | - Maarja Öpik
- Institute of Ecology and Earth Sciences, University of Tartu, Tartu, Estonia
| | - Sergei Põlme
- Center of Mycology and Microbiology, University of Tartu, Tartu, Estonia
| | - Meelis Pärtel
- Institute of Ecology and Earth Sciences, University of Tartu, Tartu, Estonia
| | - Cherdchai Phosri
- Department of Biology, Nakhon Phanom University, Nakhon Phanom, Thailand
| | - Marina Semchenko
- Institute of Ecology and Earth Sciences, University of Tartu, Tartu, Estonia
| | - Tanel Vahter
- Institute of Ecology and Earth Sciences, University of Tartu, Tartu, Estonia
| | - Jiři Doležal
- Institute of Botany, The Czech Academy of Sciences, Třeboň, Czechia
- Faculty of Science, University of South Bohemia, České Budějovice, Czechia
| | - Aida M. Vasco Palacios
- Grupo de Microbiología Ambiental y Grupo BioMicro, Escuela de Microbiología, Universidad de Antioquia UdeA, Medellín, Colombia
| | - Leho Tedersoo
- Zoology Department, College of Science, King Saud University, Riyadh, Saudi Arabia
- Center of Mycology and Microbiology, University of Tartu, Tartu, Estonia
| | - Martin Zobel
- Zoology Department, College of Science, King Saud University, Riyadh, Saudi Arabia
- Department of Botany, University of Tartu, Tartu, Estonia
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17
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Droz AG, Coffman RR, Eagar AC, Blackwood CB. Drivers of fungal diversity and community biogeography differ between green roofs and adjacent ground-level green space. Environ Microbiol 2022; 24:5809-5824. [PMID: 36054483 PMCID: PMC10087955 DOI: 10.1111/1462-2920.16190] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/21/2022] [Accepted: 08/29/2022] [Indexed: 01/12/2023]
Abstract
Green roof soils are usually engineered for purposes other than urban biodiversity, which may impact their fungal communities, and in turn impact the health of plants in the urban ecosystem. We examined the drivers of fungal diversity and community composition in soil of green roofs and adjacent ground-level green spaces in three Midwestern USA cities-Chicago, Cleveland, and Minneapolis. Overall, fungal communities on green roofs were more diverse than ground-level green spaces and were correlated with plant cover (positively) and roof age (negatively) rather than abiotic soil properties. Fungal community composition was distinct between roof and ground environments, among cities, and between sampling sites, but green roofs and their immediately surrounding ground-level green space showed some similarity. This suggests dispersal limitation may result in geographic structuring at large spatial scales, but dispersal between roofs and their neighbouring sites may be occurring. Different fungal taxonomic and functional groups were better explained when roofs were classified either by depth (extensive or intensive) or functional intent of the roof design (i.e. stormwater/energy, biodiversity, or aesthetics/recreation). Our results demonstrate that green roofs are an important reservoir of fungal diversity in the urban landscape, which should be considered in future green roof design.
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Affiliation(s)
- Anna G Droz
- Department of Biological Sciences, Kent State University, Kent, Ohio, USA
| | - Reid R Coffman
- College of Architecture and Environmental Design, Kent State University, Kent, Ohio, USA
| | - Andrew C Eagar
- Department of Biological Sciences, Kent State University, Kent, Ohio, USA
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Lin Z, Shi L, Wei X, Han B, Peng C, Yao Z, Xiao Q, Lu X, Deng Y, Zhou H, Liu K, Shao X. Soil properties rather than plant diversity mediate the response of soil bacterial community to N and P additions in an alpine meadow. Front Microbiol 2022; 13:1036451. [PMID: 36406385 PMCID: PMC9668868 DOI: 10.3389/fmicb.2022.1036451] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/07/2022] [Accepted: 10/17/2022] [Indexed: 11/06/2022] Open
Abstract
The alpine meadow on the Qinghai-Tibetan Plateau, which is susceptible to global climate change and human activities, is subject to nutrient addition such as nitrogen (N) and phosphorus (P) to enhance soil available nutrients and ecosystem productivity. Soil bacterial community partly drivers the effects of nutrient additions on ecosystem processes, whereas the factors influencing N and P additions on bacterial community in alpine meadows are not well documented. We conducted a N and P addition experiment in an alpine meadow ecosystem on the Qinghai-Tibetan Plateau with four treatments: untreated control (CK), N addition (N), P addition (P), and NP addition (NP). We employed a high-throughput Illumina Miseq sequencing technology to investigate the response of soil bacterial community to short-term N and P additions. N and P additions decreased soil bacterial richness (OTU numbers and Chao 1 index), and P addition decreased soil bacterial diversity (Shannon and Simpson indices). N addition directly induced the change of soil NH4+−N, and decreased plant diversity. The N and P additions reduced soil bacterial community diversity, whose response was independent with plant diversity. Additionally, nutrient additions altered soil bacterial community composition, which were highly correlated with soil properties (i.e. pH, NH4+−N, and TP) as shown by RDA. Consistently, structural equation modeling results revealed that N addition indirectly acted on soil bacterial community through altering soil available nutrients and pH, while P addition indirectly affected bacterial community by increasing soil P availability. These findings imply that more attention should be paid to soil properties in regulating belowground biodiversity process in alpine meadows under future environmental change scenario.
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Affiliation(s)
- Zhenrong Lin
- College of Grassland Science and Technology, China Agricultural University, Beijing, China
| | - Lina Shi
- College of Grassland Science and Technology, China Agricultural University, Beijing, China
| | - Xiaoting Wei
- Institute of Ecological Protection and Restoration, Chinese Academy of Forestry, Beijing, China
| | - Bing Han
- College of Grassland Science and Technology, China Agricultural University, Beijing, China
| | - Cuoji Peng
- College of Grassland Science and Technology, China Agricultural University, Beijing, China
| | - Zeying Yao
- College of Grassland Science and Technology, China Agricultural University, Beijing, China
- College of Grassland Science, Gansu Agricultural University, Lanzhou, China
| | - Qing Xiao
- College of Grassland Science and Technology, China Agricultural University, Beijing, China
| | - Xinmin Lu
- Tianshui Institute of Pomology, Tianshui, China
| | - Yanfang Deng
- Qilian Mountain National Park Qinghai Service Guarantee Center, Xining, China
| | - Huakun Zhou
- Key Laboratory of Restoration Ecology of Cold Area in Qinghai Province, Northwest Institute of Plateau Biology, Chinese Academy of Science, Xining, China
| | - Kesi Liu
- College of Grassland Science and Technology, China Agricultural University, Beijing, China
| | - Xinqing Shao
- College of Grassland Science and Technology, China Agricultural University, Beijing, China
- *Correspondence: Xinqing Shao
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19
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Liu K, Hu A, Hou L, Zhang L, Zeng Q, Yan Q, Wang F, Zhang Z, Xiao X, Junzhi L, Liu Y. Effects of land-use patterns on the biogeography of the sediment bacteria in the Yarlung Tsangpo River. FEMS Microbiol Ecol 2022; 98:6764718. [PMID: 36264286 DOI: 10.1093/femsec/fiac125] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/19/2022] [Revised: 09/08/2022] [Accepted: 10/18/2022] [Indexed: 01/21/2023] Open
Abstract
Bacteria communities, as key drivers of energy flow and nutrient recycling in rivers, usually consist of a few abundant taxa and many rare taxa. During the last decades, rivers on the Tibetan Plateau have experienced dramatic land surface changes under climate change and anthropogenic disturbances. However, the responses of abundant and rare taxa to such changes and disturbances still remains unclear. In this study, we explored the biogeography and drivers of the abundant and rare bacteria in Yarlung Tsangpo River sediments on the Tibetan Plateau. Our study demonstrated that changes in surrounding land-use patterns, especially in forest land, bare land and cropland, had profound influences on the distribution of the abundant and rare sediment bacteria in the Yarlung Tsangpo River. Although both communities exhibited significant distance-decay patterns, dispersal limitation was the dominant process in the abundant community, while the rare community was mainly driven by heterogeneous selection. Our results also revealed that the abundant bacteria exhibited stronger adaptation across environmental gradients than the rare bacteria. The similar biogeographic patterns but contrasting assembly processes in abundant and rare communities may result from the differences in their environmental adaptation processes. This work provides valuable insights into the importance of land surface changes in influencing the biogeographic patterns of bacteria in fluvial sediments, which helps to predict their activities and patterns in Tibetan rivers under future global climate change and anthropogenic disturbances.
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Affiliation(s)
- Keshao Liu
- State Key Laboratory of Tibetan Plateau Earth System, Environment and Resources (TPESER), Institute of Tibetan Plateau Research, Chinese Academy of Sciences, Beijing 100101, China
| | - Anyi Hu
- CAS Key Laboratory of Urban pollutant Conversion, Institute of Urban Environment, Chinese Academy of Sciences, Xiamen 361021, China.,University of Chinese Academy of Sciences, Beijing 100049, China.,Fujian Key Laboratory of Watershed Ecology, Institute of Urban Environment, Chinese Academy of Sciences, Xiamen 361021, China
| | - Liyuan Hou
- Utah Water Research Laboratory, Utah State University, Logan, Utah 84322, United States
| | - Lanping Zhang
- CAS Key Laboratory of Urban pollutant Conversion, Institute of Urban Environment, Chinese Academy of Sciences, Xiamen 361021, China.,University of Chinese Academy of Sciences, Beijing 100049, China.,Fujian Key Laboratory of Watershed Ecology, Institute of Urban Environment, Chinese Academy of Sciences, Xiamen 361021, China
| | - Qiaoting Zeng
- CAS Key Laboratory of Urban pollutant Conversion, Institute of Urban Environment, Chinese Academy of Sciences, Xiamen 361021, China.,Fujian Key Laboratory of Watershed Ecology, Institute of Urban Environment, Chinese Academy of Sciences, Xiamen 361021, China
| | - Qi Yan
- Center for the Pan-Third Pole Environment, Lanzhou University, Lanzhou 730000, China.,School of Life Sciences, Lanzhou University, Lanzhou 730000, China
| | - Feng Wang
- State Key Laboratory of Tibetan Plateau Earth System, Environment and Resources (TPESER), Institute of Tibetan Plateau Research, Chinese Academy of Sciences, Beijing 100101, China.,University of Chinese Academy of Sciences, Beijing 100049, China
| | - Zhihao Zhang
- State Key Laboratory of Tibetan Plateau Earth System, Environment and Resources (TPESER), Institute of Tibetan Plateau Research, Chinese Academy of Sciences, Beijing 100101, China.,University of Chinese Academy of Sciences, Beijing 100049, China
| | - Xiong Xiao
- College of Geographic Science, Hunan Normal University, Changsha 410081, China
| | - Liu Junzhi
- Center for the Pan-Third Pole Environment, Lanzhou University, Lanzhou 730000, China
| | - Yongqin Liu
- State Key Laboratory of Tibetan Plateau Earth System, Environment and Resources (TPESER), Institute of Tibetan Plateau Research, Chinese Academy of Sciences, Beijing 100101, China.,Center for the Pan-Third Pole Environment, Lanzhou University, Lanzhou 730000, China
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20
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González Fradejas G, García de León D, Vasar M, Koorem K, Zobel M, Öpik M, Moora M, Rey Benayas JM. Hedgerows increase the diversity and modify the composition of arbuscular mycorrhizal fungi in Mediterranean agricultural landscapes. MYCORRHIZA 2022; 32:397-407. [PMID: 36087125 PMCID: PMC9561024 DOI: 10.1007/s00572-022-01090-5] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 06/29/2022] [Accepted: 09/02/2022] [Indexed: 06/15/2023]
Abstract
Sustainable agriculture is essential to address global challenges such as climate change and biodiversity loss. Hedgerows enhance aboveground biodiversity and provide ecosystem services, but little is known about their impact on soil biota. Arbuscular mycorrhizal (AM) fungi are one of the key components of belowground biodiversity. We compared the diversity and composition of AM fungal communities at four farmland sites located in Central Spain, where 132 soil samples in total were collected to assess soil physical and chemical properties and the AM fungal communities. We compared the richness (number of AM fungal taxa), taxonomic, functional, and phylogenetic diversity, and structure of the AM fungal communities across three farmland habitat types, namely hedgerows, woody crops (olive groves and vineyard), and herbaceous crops (barley, sunflower, and wheat). Our results showed positive effects of hedgerows on most diversity metrics. Almost 60% of the AM fungal taxa were shared among the three farmland habitat types. Hedgerows increased AM fungal taxonomic richness (31%) and alpha diversity (25%), and especially so compared to herbaceous crops (45% and 28%, respectively). Hedgerows harbored elevated proportions of AM fungi with non-ruderal life-history strategies. AM fungal communities were more similar between hedgerows and woody crops than between hedgerows and adjacent herbaceous crops, possibly because of differences in tillage and fertilization. Unexpectedly, hedgerows reduced phylogenetic diversity, which might be related to more selective associations of AM fungi with woody plants than with herbaceous crops. Overall, the results suggest that planting hedgerows contributes to maintain belowground diversity. Thus, European farmers should plant more hedgerows to attain the goals of the EU Biodiversity Strategy for 2030.
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Affiliation(s)
- Guillermo González Fradejas
- Grupo de Ecología y Restauración Forestal (FORECO), Departamento de Ciencias de La Vida, Universidad de Alcalá, Alcalá de Henares, Spain
- Institute of Ecology and Earth Sciences, University of Tartu, Tartu, Estonia
| | - David García de León
- Grupo de Ecología y Restauración Forestal (FORECO), Departamento de Ciencias de La Vida, Universidad de Alcalá, Alcalá de Henares, Spain.
| | - Martti Vasar
- Institute of Ecology and Earth Sciences, University of Tartu, Tartu, Estonia
| | - Kadri Koorem
- Institute of Ecology and Earth Sciences, University of Tartu, Tartu, Estonia
| | - Martin Zobel
- Institute of Ecology and Earth Sciences, University of Tartu, Tartu, Estonia
| | - Maarja Öpik
- Institute of Ecology and Earth Sciences, University of Tartu, Tartu, Estonia
| | - Mari Moora
- Institute of Ecology and Earth Sciences, University of Tartu, Tartu, Estonia
| | - José María Rey Benayas
- Grupo de Ecología y Restauración Forestal (FORECO), Departamento de Ciencias de La Vida, Universidad de Alcalá, Alcalá de Henares, Spain
- Fundación Internacional para la Restauración de Ecosistemas, Madrid, Spain
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21
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Ablimit R, Li W, Zhang J, Gao H, Zhao Y, Cheng M, Meng X, An L, Chen Y. Altering microbial community for improving soil properties and agricultural sustainability during a 10-year maize-green manure intercropping in Northwest China. JOURNAL OF ENVIRONMENTAL MANAGEMENT 2022; 321:115859. [PMID: 35985268 DOI: 10.1016/j.jenvman.2022.115859] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/19/2022] [Revised: 07/17/2022] [Accepted: 07/22/2022] [Indexed: 06/15/2023]
Abstract
Maize is a crop that is cultivated worldwide. The Hexi Oasis is one of the most important areas for high-yield maize seed production in China. Green manure, a plant fertilizer, has great potential for increasing crop yield and agricultural sustainability. However, the role of microorganisms in soil health and the microbiological mechanism of green manure in improving soil fertility and crop production in the Hexi Oasis area remain unknown. The effects of maize-green manure intercropping on the soil microbial community structure and diversity and the mechanism of soil improvement were investigated in a 10-year field experiment. The study revealed that microbial phylotypes were grouped into four major ecological clusters. Module #2 is a soil core ecological cluster enriched with many plant growth-promoting rhizobacteria and arbuscular mycorrhizal fungi. The application of green manure led to significantly increased soil pH, nutrient contents, and enzyme activities, and significantly reduced the relative abundance of potential plant pathogens compared with monocropping, which should ensure high and stable maize yield under long-term continuous cropping. It also increased the economic benefits by 56.39% compared with monocropping, owing to the additional products produced by the green manure. These improvements were associated with changes in the microbial community structure and activity, consistent with the structural equation model results. Therefore, soil microorganisms are the key drivers of the potential benefits of maize-green manure on agricultural sustainability.
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Affiliation(s)
- Ruxangul Ablimit
- School of Life Sciences, Lanzhou, 730000, China; The Key Laboratory of Cell Activity and Adversity Adaptation, Ministry of Education, School of Life Sciences, Lanzhou University, Lanzhou, 730000, China.
| | - Weikun Li
- School of Life Sciences, Lanzhou, 730000, China; The Key Laboratory of Cell Activity and Adversity Adaptation, Ministry of Education, School of Life Sciences, Lanzhou University, Lanzhou, 730000, China
| | - Jiudong Zhang
- Institute of Soil, Fertilizer, and Water Saving Agriculture, Gansu Academy of Agricultural Sciences, Lanzhou, Gansu, 730070, China
| | - Haining Gao
- Key Laboratory of the Hexi Corridor Resources Utilization of Gansu, Zhangye, 734000, China
| | - Yiming Zhao
- School of Life Sciences, Lanzhou, 730000, China
| | | | - Xueqin Meng
- School of Life Sciences, Lanzhou, 730000, China
| | - Lizhe An
- School of Life Sciences, Lanzhou, 730000, China.
| | - Yong Chen
- School of Life Sciences, Lanzhou, 730000, China; The Key Laboratory of Cell Activity and Adversity Adaptation, Ministry of Education, School of Life Sciences, Lanzhou University, Lanzhou, 730000, China.
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22
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Guy P, Sibly R, Smart SM, Tibbett M, Pickles BJ. Mycorrhizal type of woody plants influences understory species richness in British broadleaved woodlands. THE NEW PHYTOLOGIST 2022; 235:2046-2053. [PMID: 35622460 PMCID: PMC9543792 DOI: 10.1111/nph.18274] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 03/15/2022] [Accepted: 05/12/2022] [Indexed: 06/15/2023]
Abstract
Mature temperate woodlands are commonly dominated by ectomycorrhizal trees, whereas understory plants predominantly form arbuscular mycorrhizal associations. Due to differences in plant-fungus compatibility between canopy and ground layer vegetation the 'mycorrhizal mediation hypothesis' predicts that herbaceous plant establishment may be limited by a lack of suitable mycorrhizal fungal inoculum. We examined plant species data for 103 woodlands across Great Britain recorded in 1971 and in 2000 to test whether herbaceous plant species richness was related to the proportion of arbuscular mycorrhizal woody plants. We compared the effect of mycorrhizal type with other important drivers of woodland plant species richness. We found a positive effect of the relative abundance of arbuscular mycorrhizal woody plants on herbaceous plant species richness. The size of the observed effect was smaller than that of pH. Moreover, the effect persisted over time, despite many woodlands undergoing marked successional change and increased understorey shading. This work supports the mycorrhizal mediation hypothesis in British woodlands and suggests that increased abundance of arbuscular mycorrhizal woody plants is associated with greater understory plant species richness.
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Affiliation(s)
- Petra Guy
- School of Biological SciencesUniversity of Reading, Health and Life Sciences BuildingWhiteknightsReadingRG6 6EXUK
- School of Agriculture, Policy, and DevelopmentUniversity of ReadingWhiteknightsReadingRG6 6BZUK
| | - Richard Sibly
- School of Biological SciencesUniversity of Reading, Health and Life Sciences BuildingWhiteknightsReadingRG6 6EXUK
| | - Simon M. Smart
- UK Centre for Ecology & HydrologyLibrary Avenue, BailriggLancasterLA1 4APUK
| | - Mark Tibbett
- School of Agriculture, Policy, and DevelopmentUniversity of ReadingWhiteknightsReadingRG6 6BZUK
| | - Brian J. Pickles
- School of Biological SciencesUniversity of Reading, Health and Life Sciences BuildingWhiteknightsReadingRG6 6EXUK
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23
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Gan H, Li X, Wang Y, Lü P, Ji N, Yao H, Li S, Guo L. Plants Play Stronger Effects on Soil Fungal than Bacterial Communities and Co-Occurrence Network Structures in a Subtropical Tree Diversity Experiment. Microbiol Spectr 2022; 10:e0013422. [PMID: 35475656 PMCID: PMC9241759 DOI: 10.1128/spectrum.00134-22] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/17/2022] [Accepted: 03/11/2022] [Indexed: 01/04/2023] Open
Abstract
Increasing biodiversity loss profoundly affects community structure and ecosystem functioning. However, the differences in community assembly and potential drivers of the co-occurrence network structure of soil fungi and bacteria in association with tree species richness gradients are poorly documented. Here, we examined soil fungal and bacterial communities in a Chinese subtropical tree species richness experiment (from 1 to 16 species) using amplicon sequencing targeting the internal transcribed spacer 2 and V4 hypervariable region of the rRNA genes, respectively. Tree species richness had no significant effect on the diversity of either fungi or bacteria. In addition to soil and spatial distance, tree species richness and composition had a significant effect on fungal community composition but not on bacterial community composition. In fungal rather than bacterial co-occurrence networks, the average degree, degree centralization, and clustering coefficient significantly decreased, but the modularity significantly increased with increasing tree species richness. Fungal co-occurrence network structure was influenced by tree species richness and community composition as well as the soil carbon: nitrogen ratio, but the bacterial co-occurrence network structure was affected by soil pH and spatial distance. This study demonstrates that the community assembly and potential drivers of the co-occurrence network structure of soil fungi and bacteria differ in the subtropical forest. IMPORTANCE Increasing biodiversity loss profoundly affects community structure and ecosystem functioning. Therefore, revealing the mechanisms associated with community assembly and co-occurrence network structure of microbes along plant species diversity gradients is very important for understanding biodiversity maintenance and community stability in response to plant diversity loss. Here, we compared the differences in community assembly and potential drivers of the co-occurrence network structure of soil fungi and bacteria in a subtropical tree diversity experiment. In addition to soil and spatial distance, plants are more strongly predictive of the community and co-occurrence network structure of fungi than those of bacteria. The study highlighted that plants play more important roles in shaping community assembly and interactions of fungi than of bacteria in the subtropical tree diversity experiment.
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Affiliation(s)
- Huiyun Gan
- State Key Laboratory of Mycology, Institute of Microbiology, Chinese Academy of Sciences, Beijing, China
- College of Life Sciences, University of Chinese Academy of Sciences, Beijing, China
| | - Xingchun Li
- State Key Laboratory of Mycology, Institute of Microbiology, Chinese Academy of Sciences, Beijing, China
- College of Life Sciences, University of Chinese Academy of Sciences, Beijing, China
| | - Yonglong Wang
- Faculty of Biological Science and Technology, Baotou Teacher's College, Baotou, China
| | - Pengpeng Lü
- State Key Laboratory of Mycology, Institute of Microbiology, Chinese Academy of Sciences, Beijing, China
- College of Life Sciences, University of Chinese Academy of Sciences, Beijing, China
| | - Niuniu Ji
- State Key Laboratory of Mycology, Institute of Microbiology, Chinese Academy of Sciences, Beijing, China
- DOE Center for Advanced Bioenergy & Bioproducts Innovation, University of Illinois at Urbana-Champaign, Urbana, Illinois, USA
| | - Hui Yao
- State Key Laboratory of Mycology, Institute of Microbiology, Chinese Academy of Sciences, Beijing, China
- College of Life Sciences, University of Chinese Academy of Sciences, Beijing, China
| | - Shan Li
- State Key Laboratory of Vegetation and Environmental Change, Institute of Botany, Chinese Academy of Sciences, Beijing, China
| | - Liangdong Guo
- State Key Laboratory of Mycology, Institute of Microbiology, Chinese Academy of Sciences, Beijing, China
- College of Life Sciences, University of Chinese Academy of Sciences, Beijing, China
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24
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Fu W, Chen B, Rillig MC, Jansa J, Ma W, Xu C, Luo W, Wu H, Hao Z, Wu H, Zhao A, Yu Q, Han X. Community response of arbuscular mycorrhizal fungi to extreme drought in a cold-temperate grassland. THE NEW PHYTOLOGIST 2022; 234:2003-2017. [PMID: 34449895 DOI: 10.1111/nph.17692] [Citation(s) in RCA: 17] [Impact Index Per Article: 8.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/27/2021] [Accepted: 08/20/2021] [Indexed: 06/13/2023]
Abstract
Climate extremes pose enormous threats to natural ecosystems. Arbuscular mycorrhizal (AM) fungi are key plant symbionts that can affect plant community dynamics and ecosystem stability. However, knowledge about how AM fungal communities respond to climate extremes in natural ecosystems remains elusive. Based on a grassland extreme drought experiment in Inner Mongolia, we investigated the response of AM fungal communities to extreme drought in association with plant communities. The experiment simulated two types of extreme drought (chronic/intense) of once-in-20-year occurrence. AM fungal richness and community composition exhibited high sensitivity to extreme drought and were more sensitive to intense drought than chronic drought. This community sensitivity (i.e. decline in richness and shifts in community composition) of AM fungi can be jointly explained by soil moisture, plant richness, and aboveground productivity. Notably, the robustness of the plant-AM fungal community co-response increased with drought intensity. Our results indicate that AM fungal communities are sensitive to climate extremes, and we propose that the plant community mediates AM fungal community responses. Given the ubiquitous nature of AM associations, their climate sensitivity may have profound consequences on plant communities and ecosystem stability under climate change.
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Affiliation(s)
- Wei Fu
- State Key Laboratory of Urban and Regional Ecology, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing, 100085, China
- University of Chinese Academy of Sciences, Beijing, 100049, China
| | - Baodong Chen
- State Key Laboratory of Urban and Regional Ecology, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing, 100085, China
- University of Chinese Academy of Sciences, Beijing, 100049, China
| | - Matthias C Rillig
- Institute of Biology, Freie Universität Berlin, Berlin, 14195, Germany
- Berlin-Brandenburg Institute of Advanced Biodiversity Research (BBIB), Berlin, 14195, Germany
| | - Jan Jansa
- Laboratory of Fungal Biology, Institute of Microbiology, Czech Academy of Sciences, Vídeňská 1083, Prague 4, 14220, Czech Republic
| | - Wang Ma
- University of Chinese Academy of Sciences, Beijing, 100049, China
- Erguna Forest-Steppe Ecotone Research Station, Institute of Applied Ecology, Chinese Academy of Sciences, Shenyang, 110164, China
| | - Chong Xu
- Ministry of Agriculture Key Laboratory of Crop Nutrition and Fertilization, Institute of Agricultural Resources and Regional Planning, Chinese Academy of Agricultural Sciences, Beijing, 100081, China
- State Key Laboratory of Grassland Agro-ecosystems, College of Pastoral Agriculture Science and Technology, Lanzhou University, Lanzhou, 730020, China
| | - Wentao Luo
- Erguna Forest-Steppe Ecotone Research Station, Institute of Applied Ecology, Chinese Academy of Sciences, Shenyang, 110164, China
| | - Honghui Wu
- Ministry of Agriculture Key Laboratory of Crop Nutrition and Fertilization, Institute of Agricultural Resources and Regional Planning, Chinese Academy of Agricultural Sciences, Beijing, 100081, China
| | - Zhipeng Hao
- State Key Laboratory of Urban and Regional Ecology, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing, 100085, China
| | - Hui Wu
- State Key Laboratory of Urban and Regional Ecology, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing, 100085, China
- University of Chinese Academy of Sciences, Beijing, 100049, China
| | - Aihua Zhao
- State Key Laboratory of Urban and Regional Ecology, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing, 100085, China
- University of Chinese Academy of Sciences, Beijing, 100049, China
| | - Qiang Yu
- National Hulunber Grassland Ecosystem Observation and Research Station, Institute of Agricultural Resources and Regional Planning, Chinese Academy of Agricultural Sciences, Beijing, 10008, China
| | - Xingguo Han
- University of Chinese Academy of Sciences, Beijing, 100049, China
- Erguna Forest-Steppe Ecotone Research Station, Institute of Applied Ecology, Chinese Academy of Sciences, Shenyang, 110164, China
- State Key Laboratory of Vegetation and Environmental Change, Institute of Botany, Chinese Academy of Sciences, Beijing, 100093, China
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25
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Distinct Elevational Patterns and Their Linkages of Soil Bacteria and Plant Community in An Alpine Meadow of the Qinghai-Tibetan Plateau. Microorganisms 2022; 10:microorganisms10051049. [PMID: 35630491 PMCID: PMC9143282 DOI: 10.3390/microorganisms10051049] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/30/2022] [Revised: 05/15/2022] [Accepted: 05/17/2022] [Indexed: 11/30/2022] Open
Abstract
Soil microbes play important roles in determining plant community composition and terrestrial ecosystem functions, as well as the direction and extent of terrestrial ecosystem feedback to environmental changes. Understanding the distribution patterns of plant and soil microbiota along elevation gradients is necessary to shed light on important ecosystem functions. In this study, soil bacteria along an elevation gradient in an alpine meadow ecosystem of the Qinghai−Tibetan Plateau were investigated using Illumina sequencing and GeoChip technologies. The community structure of the soil bacteria and plants presented a continuous trend along the elevation gradient, and their alpha diversity displayed different distribution patterns; however, there were no linkages between them. Beta diversity of the soil bacteria and plants was significantly influenced by elevational distance changes (p < 0.05). Functional gene categories involved in nitrogen and phosphorus cycling had faster changes than those involved in carbon degradation, and functional genes involved in labile carbon degradation also had faster variations than those involved in recalcitrant carbon degradation with elevational changes. According to Pearson’s correlation, partial Mantel test analysis, and canonical correspondence analysis, soil pH and mean annual precipitation were important environmental variables in influencing soil bacterial diversity. Soil bacterial diversity and plant diversity had different distribution patterns along the elevation gradient.
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26
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Wang G, Koziol L, Foster BL, Bever JD. Microbial mediators of plant community response to long-term N and P fertilization: Evidence of a role of plant responsiveness to mycorrhizal fungi. GLOBAL CHANGE BIOLOGY 2022; 28:2721-2735. [PMID: 35048483 DOI: 10.1111/gcb.16091] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/12/2021] [Revised: 11/26/2021] [Accepted: 12/17/2021] [Indexed: 06/14/2023]
Abstract
Climate changes and anthropogenic nutrient enrichment widely threaten plant diversity and ecosystem functions. Understanding the mechanisms governing plant species turnover across nutrient gradients is crucial to developing successful management and restoration strategies. We tested whether and how soil microbes, particularly arbuscular mycorrhizal fungi (AMF), could mediate plant community response to a 15 years long-term N (0, 4, 8, and 16 g N m-2 year-1 ) and P (0 and 8 g N m-2 year-1 ) enrichment in a grassland system. We found N and P enrichment resulted in plant community diversity decrease and composition change, in which perennial C4 graminoids were dramatically reduced while annuals and perennial forbs increased. Metabarcoding analysis of soil fungal community showed that N and P changed fungal diversity and composition, of which only a cluster of AMF identified by the co-occurrence networks analysis was highly sensitive to P treatments and was negatively correlated with shifts in percentage cover of perennial C4 graminoids. Moreover, by estimating the mycorrhizal responsiveness (MR) of 41 plant species in the field experiment from 264 independent tests, we found that the community weighted mean MR of the plant community was substantially reduced with nutrient enrichment and was positively correlated with C4 graminoids percentage cover. Both analyses of covariance and structural equation modeling indicated that the shift in MR rather than AMF composition change was the primary predictor of the decline in perennial C4 graminoids, suggesting that the energy cost invested by C4 plants on those sensitive AMF might drive the inferior competitive abilities compared with other groups. Our results suggest that shifts in the competitive ability of mycorrhizal responsive plants can drive plant community change to anthropogenic eutrophication, suggesting a functional benefit of mycorrhizal mutualism in ecological restoration following climatic or anthropogenic degradation of soil communities.
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Affiliation(s)
- Guangzhou Wang
- College of Resources and Environmental Sciences, National Academy of Agriculture Green Development, Key Laboratory of Plant-Soil Interactions, Ministry of Education, China Agricultural University, Beijing, People's Republic of China
- Kansas Biological Survey, University of Kansas, Lawrence, Kansas, USA
| | - Liz Koziol
- Kansas Biological Survey, University of Kansas, Lawrence, Kansas, USA
| | - Bryan L Foster
- Kansas Biological Survey, University of Kansas, Lawrence, Kansas, USA
- Department of Ecology and Evolutionary Biology, University of Kansas, Lawrence, Kansas, USA
| | - James D Bever
- Kansas Biological Survey, University of Kansas, Lawrence, Kansas, USA
- Department of Ecology and Evolutionary Biology, University of Kansas, Lawrence, Kansas, USA
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An F, Niu Z, Liu T, Su Y. Succession of soil bacterial community along a 46-year choronsequence artificial revegetation in an arid oasis-desert ecotone. THE SCIENCE OF THE TOTAL ENVIRONMENT 2022; 814:152496. [PMID: 34968610 DOI: 10.1016/j.scitotenv.2021.152496] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/08/2021] [Revised: 12/12/2021] [Accepted: 12/13/2021] [Indexed: 06/14/2023]
Abstract
How the bacterial community structure and potential metabolic functions will change after revegetation in arid desert ecosystems is still unknown. We used high-throughput pyrosequencing to explore changes in soil bacterial diversity, structure and metabolic pathways, and the key driving factors along a chronosequence of 46-year Haloxylon ammodendron revegetation in an oasis-desert ecotone in the northwestern China. Our results indicated that establishment of H. ammodendron on shifting sand dunes significantly changed the structure of bacterial communities and increased their diversity and richness. The main dominant phyla were Actinobacteria (32.1-41.3%) and Proteobacteria (19.2-27.0%); in that, α-Proteobacteria (16.4-20.7%) were the most abundant Proteobacteria. Kocuria coexisted at different succession stage after year 0, and their relative abundance ranged from 3.8-9.0%. Principal coordinates analysis (PCoA) showed that bacterial community from the same revegetation site grouped together and generally separated from each other, indicating that significant shifts in bacterial community structure occurred after revegetation. LEfSe analysis identified unique biomarkers in the soil samples from seven sites. Moreover, PICRUSt analysis indicated similar overall patterns of metabolic pathways in different succession stage. Redundancy analysis (RDA) showed that total carbon, pH and total phosphorus were major abiotic factors driving the structure of bacterial communities, which explained 57.5% of the variation in bacterial communities. Our findings advance the current understanding of plant-soil interactions in the processes of ecological restoration and desertification reversal.
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Affiliation(s)
- Fangjiao An
- Northwest Institute of Eco-Environment and Resources, Chinese Academy of Sciences, Lanzhou 730000, China; University of Chinese Academy of Sciences, Beijing 100049, China
| | - Ziru Niu
- Northwest Institute of Eco-Environment and Resources, Chinese Academy of Sciences, Lanzhou 730000, China; University of Chinese Academy of Sciences, Beijing 100049, China
| | - Tingna Liu
- Northwest Institute of Eco-Environment and Resources, Chinese Academy of Sciences, Lanzhou 730000, China; University of Chinese Academy of Sciences, Beijing 100049, China
| | - Yongzhong Su
- Northwest Institute of Eco-Environment and Resources, Chinese Academy of Sciences, Lanzhou 730000, China.
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28
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Duell EB, O'Hare A, Wilson GW. Inoculation with native soil improves seedling survival and reduces non‐native reinvasion in a grassland restoration. Restor Ecol 2022. [DOI: 10.1111/rec.13685] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Eric B. Duell
- Department of Natural Resource Ecology and Management Oklahoma State University Stillwater Oklahoma USA 74075
| | - Anna O'Hare
- Burns and McDonnell Chicago Illinois USA 60642
| | - Gail W.T. Wilson
- Department of Natural Resource Ecology and Management Oklahoma State University Stillwater Oklahoma USA 74075
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Zhang RT, Liu YN, Zhong HX, Chen XW, Sui X. Effects of simulated nitrogen deposition on the soil microbial community diversity of a Deyeuxia angustifolia wetland in the Sanjiang Plain, Northeastern China. ANN MICROBIOL 2022. [DOI: 10.1186/s13213-022-01666-8] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022] Open
Abstract
Abstract
Purpose
The soil microbial community is an important bioactive component of terrestrial ecosystems. Its structural and functional diversity directly affects carbon and nitrogen processes. This study aimed to investigate the variations in the diversity and composition of soil bacterial communities in a wetland with different nitrogen deposition conditions.
Methods
A long-term simulated nitrogen deposition experiment was conducted in the Ecological Locating Research Station of the Institute of Nature and Ecology of Heilongjiang Academy of Sciences. Three different treatments were evaluated, including low nitrogen (LK; 40 kg N·hm-2·a-1), high nitrogen (HN; 80 kg N·hm-2·a-1), and control (CK; 0 kg N·hm-2·a-1). Bacterial 16S rDNA was then sequenced and analyzed using the next-generation sequencing technology.
Result
Higher levels of N deposition resulted in an α-diversity increase followed by a decrease, with significant reductions in the HN treatment. Simulated nitrogen deposition resulted in changes in the structure and abundance of bacterial communities in wetland soils. The dominant phyla in all three plots were Proteobacteria and Acidobacteria. Compared with CK, the relative abundance of Chloroflexi increased significantly under the HN treatment (P < 0.05), whereas the relative abundance of Firmicutes and Bacteroidetes decreased significantly (P < 0.05). Nitrogen input changed the composition and relative abundance of the bacterial community, which was possibly due to N-induced soil acidification.
Conclusion
This study thus provides a theoretical basis for predicting the effects of atmospheric nitrogen deposition on soil microorganisms, as well as changes in the wetland ecosystem in Sanjiang Plain.
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30
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Zhang B, Xue K, Zhou S, Wang K, Liu W, Xu C, Cui L, Li L, Ran Q, Wang Z, Hu R, Hao Y, Cui X, Wang Y. Environmental selection overturns the decay relationship of soil prokaryotic community over geographic distance across grassland biotas. eLife 2022; 11:70164. [PMID: 35073255 PMCID: PMC8828049 DOI: 10.7554/elife.70164] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/07/2021] [Accepted: 01/21/2022] [Indexed: 11/26/2022] Open
Abstract
Though being fundamental to global diversity distribution, little is known about the geographic pattern of soil microorganisms across different biotas on a large scale. Here, we investigated soil prokaryotic communities from Chinese northern grasslands on a scale up to 4000 km in both alpine and temperate biotas. Prokaryotic similarities increased over geographic distance after tipping points of 1760–1920 km, generating a significant U-shape pattern. Such pattern was likely due to decreased disparities in environmental heterogeneity over geographic distance when across biotas, supported by three lines of evidences: (1) prokaryotic similarities still decreased with the environmental distance, (2) environmental selection dominated prokaryotic assembly, and (3) short-term environmental heterogeneity followed the U-shape pattern spatially, especially attributed to dissolved nutrients. In sum, these results demonstrate that environmental selection overwhelmed the geographic ‘distance’ effect when across biotas, overturning the previously well-accepted geographic pattern for microbes on a large scale.
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Affiliation(s)
- Biao Zhang
- College of Resources and Environment, University of Chinese Academy of Sciences
| | - Kai Xue
- College of Resources and Environment, University of Chinese Academy of Sciences
| | - Shutong Zhou
- College of Life Sciences, University of Chinese Academy of Sciences
| | - Kui Wang
- College of Life Sciences, University of Chinese Academy of Sciences
| | - Wenjing Liu
- College of Resources and Environment, University of Chinese Academy of Sciences
| | - Cong Xu
- Aerospace Information Research Institute, University of Chinese Academy of Sciences
| | - Lizhen Cui
- College of Life Sciences, University of Chinese Academy of Sciences
| | - Linfeng Li
- College of Resources and Environment, University of Chinese Academy of Sciences
| | - Qinwei Ran
- College of Life Sciences, University of Chinese Academy of Sciences
| | - Zongsong Wang
- College of Life Sciences, University of Chinese Academy of Sciences
| | - Ronghai Hu
- College of Resources and Environment, University of Chinese Academy of Sciences
| | - Yanbin Hao
- College of Life Sciences, University of Chinese Academy of Sciences
| | - Xiaoyong Cui
- Key Laboratory of Adaptation and Evolution of Plateau Biota, University of Chinese Academy of Sciences
| | - Yanfen Wang
- College of Resources and Environment, University of Chinese Academy of Sciences
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31
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Ambrosino ML, Velázquez MS, Ontivero E, Cabello MN, Lugo MA. Communities of Glomeromycota in the Argentine Arid Diagonal: An Approach from Their Ecological Role in Grassland Management and Use. Fungal Biol 2022. [DOI: 10.1007/978-3-031-12994-0_19] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
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32
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Aavik T, Träger S, Zobel M, Honnay O, Van Geel M, Bueno CG, Koorem K. The joint effect of host plant genetic diversity and arbuscular mycorrhizal fungal communities on restoration success. Funct Ecol 2021. [DOI: 10.1111/1365-2435.13914] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Tsipe Aavik
- Department of Botany Institute of Ecology and Earth Sciences University of Tartu Tartu Estonia
| | - Sabrina Träger
- Department of Botany Institute of Ecology and Earth Sciences University of Tartu Tartu Estonia
- Institute of Biology/Geobotany and Botanical Garden Martin‐Luther‐University Halle‐Wittenberg Halle (Saale) Germany
| | - Martin Zobel
- Department of Botany Institute of Ecology and Earth Sciences University of Tartu Tartu Estonia
| | - Olivier Honnay
- Plant Conservation and Population Biology Biology Department University of Leuven Heverlee Belgium
| | - Maarten Van Geel
- Plant Conservation and Population Biology Biology Department University of Leuven Heverlee Belgium
| | - C. Guillermo Bueno
- Department of Botany Institute of Ecology and Earth Sciences University of Tartu Tartu Estonia
| | - Kadri Koorem
- Department of Botany Institute of Ecology and Earth Sciences University of Tartu Tartu Estonia
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Flooding and straw returning regulates the partitioning of soil phosphorus fractions and phoD-harboring bacterial community in paddy soils. Appl Microbiol Biotechnol 2021; 105:9343-9357. [PMID: 34757435 DOI: 10.1007/s00253-021-11672-6] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/06/2021] [Revised: 10/26/2021] [Accepted: 10/28/2021] [Indexed: 10/19/2022]
Abstract
Flooding and straw returning are effective agricultural practices in promoting phosphorus (P) availability in paddy soils. However, little is known about the effects of these practices and their interaction on the soil P pools and functional microbes responsible for soil P mobilization. Our 4-year paddy field experiment aimed to analyze the responses of soil P fractions and phoD-harboring bacterial communities in a double-rice cropping system to intermittent flooding (IF) and continuous flooding (CF), in plots with (+ S) and without (-S) straw return. Compared to IF, CF significantly increased soil citrate-P and marginally decreased the HCl-P fractions, suggesting that the stable inorganic P pools are transferred to labile inorganic P at lower redox potentials. Compared to the -S treatments, + S treatments significantly increased the labile organic fractions (enzyme-P). Correspondingly, a decreased soil total organic P concentration was observed in + S treatment. Additionally, + S treatment significantly increased the activity of acid phosphomonoesterase and alkaline phosphomonoesterase and the abundance of phoD-harboring bacteria. These results indicated that straw promoted organic P minimization to release orthophosphate. The diversity of the phoD-harboring bacteria and complexity of the co-occurrence network decreased under the CF + S treatment; however, all keystone species of the phoD-harboring bacteria were retained in this oxygen-deficient environment. This study highlights that irrigation regimes mediate the processes of inorganic P mobilization, while straw returns regulate the processes of organic P mineralization. Additionally, flooding could be a more effective agricultural practice than straw returning to promote soil P availability in paddy soils. KEY POINTS: •Soil P pools and phoD-harboring bacteria communities were assessed. •Straw return mainly affects the mineralization of organic P. •Continuous flooding mainly affects the mobilization of inorganic P.
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Liu S, Moora M, Vasar M, Zobel M, Öpik M, Koorem K. Arbuscular mycorrhizal fungi promote small-scale vegetation recovery in the forest understorey. Oecologia 2021; 197:685-697. [PMID: 34716490 DOI: 10.1007/s00442-021-05065-9] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/27/2021] [Accepted: 10/17/2021] [Indexed: 11/26/2022]
Abstract
Root-associating arbuscular mycorrhizal (AM) fungi foster vegetation recovery in degraded habitats. AM fungi increase nutrient availability for host plants; therefore, their importance is expected to be higher when nutrient availability is low. However, little is known about how small-scale variation in nutrient availability influences plant and AM fungal communities in a stable ecosystem. We conducted a 2-year field study in the understorey of a boreonemoral forest where we examined plant and AM fungal communities at microsites (15 cm diameter) with intact vegetation cover and at disturbed microsites where vegetation was cleared away and soil was sterilized to remove soil biota. We manipulated soil nutrient content (increased with fertilizer, unchanged, or decreased with sucrose addition) and fungal activity (natural or suppressed by fungicide addition) at these microsites. After two vegetation seasons, manipulations with nutrient content resulted in significant, although moderate, differences in the content of soil nutrients (e.g. in soil phosphorus). Suppression of fungal activity resulted in lower richness, abundance and phylogenetic diversity of AM fungal community, independently of microsite type and soil fertility level. Plant species richness and diversity decreased when fungal activity was suppressed at disturbed but not in intact microsites. The correlation between plant and AM fungal communities was not influenced by microsite type or soil fertility. We conclude that small-scale variation in soil fertility and habitat integrity does not influence the interactions between plants and AM fungi. The richness, but not composition, of AM fungal communities recovered fast after small-scale disturbance and supported the recovery of species-rich vegetation.
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Affiliation(s)
- Siqiao Liu
- Department of Botany, Institute of Ecology and Earth Sciences, University of Tartu, Tartu, Estonia.
| | - Mari Moora
- Department of Botany, Institute of Ecology and Earth Sciences, University of Tartu, Tartu, Estonia
| | - Martti Vasar
- Department of Botany, Institute of Ecology and Earth Sciences, University of Tartu, Tartu, Estonia
| | - Martin Zobel
- Department of Botany, Institute of Ecology and Earth Sciences, University of Tartu, Tartu, Estonia
| | - Maarja Öpik
- Department of Botany, Institute of Ecology and Earth Sciences, University of Tartu, Tartu, Estonia
| | - Kadri Koorem
- Department of Botany, Institute of Ecology and Earth Sciences, University of Tartu, Tartu, Estonia
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35
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Ferlian O, Goldmann K, Eisenhauer N, Tarkka MT, Buscot F, Heintz-Buschart A. Distinct effects of host and neighbour tree identity on arbuscular and ectomycorrhizal fungi along a tree diversity gradient. ISME COMMUNICATIONS 2021; 1:40. [PMID: 37938639 PMCID: PMC9723774 DOI: 10.1038/s43705-021-00042-y] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/10/2021] [Revised: 08/02/2021] [Accepted: 08/05/2021] [Indexed: 04/26/2023]
Abstract
Plant diversity and plant-related ecosystem functions have been important in biodiversity-ecosystem functioning studies. However, biotic interactions with mycorrhizal fungi have been understudied although they are crucial for plant-resource acquisition. Here, we investigated the effects of tree species richness and tree mycorrhizal type on arbuscular (AMF) and ectomycorrhizal fungal (EMF) communities. We aimed to understand how dissimilarities in taxa composition and beta-diversity are related to target trees and neighbours of the same or different mycorrhizal type. We sampled a tree diversity experiment with saplings (~7 years old), where tree species richness (monocultures, 2-species, and 4-species mixtures) and mycorrhizal type were manipulated. AMF and EMF richness significantly increased with increasing tree species richness. AMF richness of mixture plots resembled that of the sum of the respective monocultures, whereas EMF richness of mixture plots was lower compared to the sum of the respective monocultures. Specialisation scores revealed significantly more specialised AMF than EMF suggesting that, in contrast to previous studies, AMF were more specialised, whereas EMF were not. We further found that AMF communities were little driven by the surrounding trees, whereas EMF communities were. Our study revealed drivers of mycorrhizal fungal communities and further highlights the distinct strategies of AMF and EMF.
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Affiliation(s)
- Olga Ferlian
- German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig, Puschstrasse 4, Leipzig, Germany.
- Institute of Biology, Leipzig University, Puschstrasse 4, Leipzig, Germany.
| | - Kezia Goldmann
- Department Soil Ecology, UFZ - Helmholtz Centre for Environmental Research, Theodor-Lieser-Straße 4, Halle (Saale), Germany
| | - Nico Eisenhauer
- German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig, Puschstrasse 4, Leipzig, Germany
- Institute of Biology, Leipzig University, Puschstrasse 4, Leipzig, Germany
| | - Mika T Tarkka
- German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig, Puschstrasse 4, Leipzig, Germany
- Department Soil Ecology, UFZ - Helmholtz Centre for Environmental Research, Theodor-Lieser-Straße 4, Halle (Saale), Germany
| | - François Buscot
- German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig, Puschstrasse 4, Leipzig, Germany
- Department Soil Ecology, UFZ - Helmholtz Centre for Environmental Research, Theodor-Lieser-Straße 4, Halle (Saale), Germany
| | - Anna Heintz-Buschart
- German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig, Puschstrasse 4, Leipzig, Germany
- Department Soil Ecology, UFZ - Helmholtz Centre for Environmental Research, Theodor-Lieser-Straße 4, Halle (Saale), Germany
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36
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Yang M, Shi Z, Mickan BS, Zhang M, Cao L. Alterations to arbuscular mycorrhizal fungal community composition is driven by warming at specific elevations. PeerJ 2021; 9:e11792. [PMID: 34327058 PMCID: PMC8310619 DOI: 10.7717/peerj.11792] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/26/2021] [Accepted: 06/25/2021] [Indexed: 11/20/2022] Open
Abstract
Background Global warming can alter plant productivity, and community composition which has consequences for soil-plant associated microorganisms. Arbuscular mycorrhizal fungi (AMF) are distributed widely and form symbiotic relationships with more than 80% of vascular plants and play a key role in nutrient cycling processes at the ecosystem scale. Methods A simulated warming experiment at multiple elevations (3,000, 3,500, 3,800, and 4,170 m) was conducted utilizing an in-situ open-top chamber (OTC) for exploring the effect of global warming on AMF community structure in the Qinghai-Tibet Plateau (QTP). This region has been identified as one of the most sensitive areas to climatic changes. Soil DNA was extracted and sequenced using next the Mi-Seq platform for diversity profiling. Results AMF richness was higher under the simulated warming chamber, however this only occurred in the elevation of 3,500 m. Warming did not alter other AMF alpha diversity indices (e.g. Shannon, Ace, and Simpson evenness index). Glomus and Acaulospora were the dominate AMF genera as assessed through their relative abundance and occurrence in control and warming treatments at the different elevations. Conclusion Warming changed significantly AMF community. The effects of warming on AMF community structure varied depend on elevations. Moreover, the occurrences of AMF in different genera were also presented the different responses to warming in four elevations.
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Affiliation(s)
- Mei Yang
- College of Agriculture, Henan University of Science and Technology, Luoyang, China.,Henan Engineering Research Center for Rural Human Settlement, Luoyang, China.,Luoyang Key Laboratory of Symbiotic Microorganism and Green Development, Luoyang, China
| | - Zhaoyong Shi
- College of Agriculture, Henan University of Science and Technology, Luoyang, China.,Henan Engineering Research Center for Rural Human Settlement, Luoyang, China.,Luoyang Key Laboratory of Symbiotic Microorganism and Green Development, Luoyang, China
| | - Bede S Mickan
- UWA School of Agriculture and Environment, the University of Western Australia, Perth WA, Australia.,The UWA Institute of Agriculture, the University of Western Australia, Perth WA, Australia
| | - Mengge Zhang
- College of Agriculture, Henan University of Science and Technology, Luoyang, China.,Henan Engineering Research Center for Rural Human Settlement, Luoyang, China.,Luoyang Key Laboratory of Symbiotic Microorganism and Green Development, Luoyang, China
| | - Libing Cao
- College of Agriculture, Henan University of Science and Technology, Luoyang, China
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37
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Oelmann Y, Lange M, Leimer S, Roscher C, Aburto F, Alt F, Bange N, Berner D, Boch S, Boeddinghaus RS, Buscot F, Dassen S, De Deyn G, Eisenhauer N, Gleixner G, Goldmann K, Hölzel N, Jochum M, Kandeler E, Klaus VH, Kleinebecker T, Le Provost G, Manning P, Marhan S, Prati D, Schäfer D, Schöning I, Schrumpf M, Schurig E, Wagg C, Wubet T, Wilcke W. Above- and belowground biodiversity jointly tighten the P cycle in agricultural grasslands. Nat Commun 2021; 12:4431. [PMID: 34290234 PMCID: PMC8295381 DOI: 10.1038/s41467-021-24714-4] [Citation(s) in RCA: 24] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/29/2020] [Accepted: 06/25/2021] [Indexed: 02/06/2023] Open
Abstract
Experiments showed that biodiversity increases grassland productivity and nutrient exploitation, potentially reducing fertiliser needs. Enhancing biodiversity could improve P-use efficiency of grasslands, which is beneficial given that rock-derived P fertilisers are expected to become scarce in the future. Here, we show in a biodiversity experiment that more diverse plant communities were able to exploit P resources more completely than less diverse ones. In the agricultural grasslands that we studied, management effects either overruled or modified the driving role of plant diversity observed in the biodiversity experiment. Nevertheless, we show that greater above- (plants) and belowground (mycorrhizal fungi) biodiversity contributed to tightening the P cycle in agricultural grasslands, as reduced management intensity and the associated increased biodiversity fostered the exploitation of P resources. Our results demonstrate that promoting a high above- and belowground biodiversity has ecological (biodiversity protection) and economical (fertiliser savings) benefits. Such win-win situations for farmers and biodiversity are crucial to convince farmers of the benefits of biodiversity and thus counteract global biodiversity loss.
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Affiliation(s)
- Yvonne Oelmann
- grid.10392.390000 0001 2190 1447Geoecology, University of Tübingen, Tübingen, Germany
| | - Markus Lange
- grid.419500.90000 0004 0491 7318Max Planck Institute for Biogeochemistry, Jena, Germany
| | - Sophia Leimer
- grid.7892.40000 0001 0075 5874Institute of Geography and Geoecology, Karlsruhe Institute of Technology (KIT), Karlsruhe, Germany
| | - Christiane Roscher
- grid.7492.80000 0004 0492 3830UFZ - Helmholtz Centre for Environmental Research, Physiological Diversity, Leipzig, Germany ,grid.421064.50000 0004 7470 3956German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig, Leipzig, Germany
| | - Felipe Aburto
- grid.5380.e0000 0001 2298 9663LISAB, Dep. Silvicultura, Universidad de Concepción, Concepción, Chile
| | - Fabian Alt
- grid.10392.390000 0001 2190 1447Geoecology, University of Tübingen, Tübingen, Germany
| | - Nina Bange
- grid.10392.390000 0001 2190 1447Geoecology, University of Tübingen, Tübingen, Germany
| | - Doreen Berner
- grid.9464.f0000 0001 2290 1502Institute of Soil Science and Land Evaluation, Soil Biology Department, University of Hohenheim, Stuttgart, Germany
| | - Steffen Boch
- grid.419754.a0000 0001 2259 5533WSL Swiss Federal Research Institute, Birmensdorf, Switzerland
| | - Runa S. Boeddinghaus
- grid.9464.f0000 0001 2290 1502Institute of Soil Science and Land Evaluation, Soil Biology Department, University of Hohenheim, Stuttgart, Germany
| | - François Buscot
- grid.7492.80000 0004 0492 3830UFZ - Helmholtz Centre for Environmental Research, Soil Ecology Department, Halle, Germany
| | - Sigrid Dassen
- grid.418375.c0000 0001 1013 0288Department of Terrestrial Ecology, Netherlands Institute of Ecology, Wageningen, The Netherlands
| | - Gerlinde De Deyn
- grid.418375.c0000 0001 1013 0288Department of Terrestrial Ecology, Netherlands Institute of Ecology, Wageningen, The Netherlands ,grid.4818.50000 0001 0791 5666Department of Environmental Sciences, Soil Biology, University of Wageningen, Wageningen, The Netherlands
| | - Nico Eisenhauer
- grid.421064.50000 0004 7470 3956German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig, Leipzig, Germany ,grid.9647.c0000 0004 7669 9786Leipzig University, Institute of Biology, Leipzig, Germany
| | - Gerd Gleixner
- grid.419500.90000 0004 0491 7318Max Planck Institute for Biogeochemistry, Jena, Germany
| | - Kezia Goldmann
- grid.7492.80000 0004 0492 3830UFZ - Helmholtz Centre for Environmental Research, Soil Ecology Department, Halle, Germany
| | - Norbert Hölzel
- grid.5949.10000 0001 2172 9288Institute of Landscape Ecology, University of Münster, Münster, Germany
| | - Malte Jochum
- grid.421064.50000 0004 7470 3956German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig, Leipzig, Germany ,grid.9647.c0000 0004 7669 9786Leipzig University, Institute of Biology, Leipzig, Germany
| | - Ellen Kandeler
- grid.9464.f0000 0001 2290 1502Institute of Soil Science and Land Evaluation, Soil Biology Department, University of Hohenheim, Stuttgart, Germany
| | - Valentin H. Klaus
- grid.5801.c0000 0001 2156 2780Institute of Agricultural Sciences, ETH Zürich, Zürich, Switzerland
| | - Till Kleinebecker
- grid.8664.c0000 0001 2165 8627Institute of Landscape Ecology and Resource Management, Justus-Liebig-University Gießen, Gießen, Germany
| | - Gaëtane Le Provost
- grid.507705.0Senckenberg Biodiversity and Climate Research Centre (SBiK-F), Frankfurt, Germany
| | - Peter Manning
- grid.507705.0Senckenberg Biodiversity and Climate Research Centre (SBiK-F), Frankfurt, Germany
| | - Sven Marhan
- grid.9464.f0000 0001 2290 1502Institute of Soil Science and Land Evaluation, Soil Biology Department, University of Hohenheim, Stuttgart, Germany
| | - Daniel Prati
- grid.5734.50000 0001 0726 5157Institute of Plant Sciences, University of Bern, Bern, Switzerland
| | - Deborah Schäfer
- grid.5734.50000 0001 0726 5157Institute of Plant Sciences, University of Bern, Bern, Switzerland
| | - Ingo Schöning
- grid.419500.90000 0004 0491 7318Max Planck Institute for Biogeochemistry, Jena, Germany
| | - Marion Schrumpf
- grid.419500.90000 0004 0491 7318Max Planck Institute for Biogeochemistry, Jena, Germany
| | - Elisabeth Schurig
- grid.10392.390000 0001 2190 1447Geoecology, University of Tübingen, Tübingen, Germany
| | - Cameron Wagg
- grid.7400.30000 0004 1937 0650Department of Evolutionary Ecology and Environmental Studies, University of Zürich, Zürich, Switzerland ,grid.55614.330000 0001 1302 4958Fredericton Research and Development Center, Agriculture and Agri-Food Canada, Fredericton, NB Canada
| | - Tesfaye Wubet
- grid.421064.50000 0004 7470 3956German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig, Leipzig, Germany ,grid.7492.80000 0004 0492 3830UFZ - Helmholtz Centre for Environmental Research, Community Ecology Department, Halle, Germany
| | - Wolfgang Wilcke
- grid.7892.40000 0001 0075 5874Institute of Geography and Geoecology, Karlsruhe Institute of Technology (KIT), Karlsruhe, Germany
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Guzman A, Montes M, Hutchins L, DeLaCerda G, Yang P, Kakouridis A, Dahlquist‐Willard RM, Firestone MK, Bowles T, Kremen C. Crop diversity enriches arbuscular mycorrhizal fungal communities in an intensive agricultural landscape. THE NEW PHYTOLOGIST 2021; 231:447-459. [PMID: 33638170 PMCID: PMC9292320 DOI: 10.1111/nph.17306] [Citation(s) in RCA: 26] [Impact Index Per Article: 8.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/04/2020] [Revised: 02/08/2021] [Accepted: 02/15/2021] [Indexed: 05/21/2023]
Abstract
Arbuscular mycorrhizal fungi (AMF) are keystone symbionts of agricultural soils but agricultural intensification has negatively impacted AMF communities. Increasing crop diversity could ameliorate some of these impacts by positively affecting AMF. However, the underlying relationship between plant diversity and AMF community composition has not been fully resolved. We examined how greater crop diversity affected AMF across farms in an intensive agricultural landscape, defined by high nutrient input, low crop diversity and high tillage frequency. We assessed AMF communities across 31 field sites that were either monocultures or polycultures (growing > 20 different crop types) in three ways: richness, diversity and composition. We also determined root colonization across these sites. We found that polycultures drive the available AMF community into richer and more diverse communities while soil properties structure AMF community composition. AMF root colonization did not vary by farm management (monocultures vs polycultures), but did vary by crop host. We demonstrate that crop diversity enriches AMF communities, counteracting the negative effects of agricultural intensification on AMF, providing the potential to increase agroecosystem functioning and sustainability.
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Affiliation(s)
- Aidee Guzman
- Department of Environmental Science, Policy, and ManagementUniversity of California, BerkeleyBerkeleyCA94720USA
| | - Marisol Montes
- Department of Environmental Science, Policy, and ManagementUniversity of California, BerkeleyBerkeleyCA94720USA
| | - Leslie Hutchins
- Department of Environmental Science, Policy, and ManagementUniversity of California, BerkeleyBerkeleyCA94720USA
| | - Gisel DeLaCerda
- Department of Environmental Science, Policy, and ManagementUniversity of California, BerkeleyBerkeleyCA94720USA
| | - Paula Yang
- Department of BiologyCalifornia State University, FresnoFresnoCA93740USA
| | - Anne Kakouridis
- Department of Environmental Science, Policy, and ManagementUniversity of California, BerkeleyBerkeleyCA94720USA
| | | | - Mary K. Firestone
- Department of Environmental Science, Policy, and ManagementUniversity of California, BerkeleyBerkeleyCA94720USA
| | - Timothy Bowles
- Department of Environmental Science, Policy, and ManagementUniversity of California, BerkeleyBerkeleyCA94720USA
| | - Claire Kremen
- Department of Environmental Science, Policy, and ManagementUniversity of California, BerkeleyBerkeleyCA94720USA
- Institute for Resources, Environment and SustainabilityUniversity of British ColumbiaVancouverBCV6T 1Z4Canada
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Sepp S, Davison J, Moora M, Neuenkamp L, Oja J, Roslin T, Vasar M, Öpik M, Zobel M. Woody encroachment in grassland elicits complex changes in the functional structure of above‐ and belowground biota. Ecosphere 2021. [DOI: 10.1002/ecs2.3512] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022] Open
Affiliation(s)
- Siim‐Kaarel Sepp
- Department of Botany University of Tartu Lai Street 40 TartuEE 51005Estonia
| | - John Davison
- Department of Botany University of Tartu Lai Street 40 TartuEE 51005Estonia
| | - Mari Moora
- Department of Botany University of Tartu Lai Street 40 TartuEE 51005Estonia
| | - Lena Neuenkamp
- Department of Botany University of Tartu Lai Street 40 TartuEE 51005Estonia
| | - Jane Oja
- Department of Botany University of Tartu Lai Street 40 TartuEE 51005Estonia
| | - Tomas Roslin
- Department of Ecology Swedish University of Agricultural Sciences P.O. Box 7044 UppsalaSE 756 51Sweden
| | - Martti Vasar
- Department of Botany University of Tartu Lai Street 40 TartuEE 51005Estonia
| | - Maarja Öpik
- Department of Botany University of Tartu Lai Street 40 TartuEE 51005Estonia
| | - Martin Zobel
- Department of Botany University of Tartu Lai Street 40 TartuEE 51005Estonia
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Baruch Z, Liddicoat C, Cando-Dumancela C, Laws M, Morelli H, Weinstein P, Young JM, Breed MF. Increased plant species richness associates with greater soil bacterial diversity in urban green spaces. ENVIRONMENTAL RESEARCH 2021; 196:110425. [PMID: 33157108 DOI: 10.1016/j.envres.2020.110425] [Citation(s) in RCA: 9] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/16/2020] [Revised: 10/29/2020] [Accepted: 10/31/2020] [Indexed: 06/11/2023]
Abstract
The vegetation and soil microbiome within urban green spaces is increasingly managed to help conserve biodiversity and improve human health concurrently. However, the effects of green space management on urban soil ecosystems is poorly understood, despite their importance. Across 40 urban green spaces in metropolitan Adelaide, South Australia, we show that soil bacterial communities are strongly affected by urban green space type (incl. sport fields, community gardens, parklands and revegetated areas), and that plant species richness is positively associated with soil bacterial diversity. Importantly, these microbiome trends were not affected by geographic proximity of sample sites. Our results provide early evidence that urban green space management can have predictable effects on the soil microbiome, at least from a diversity perspective, which could prove important to inform policy development if urban green spaces are to be managed to optimise population health benefits.
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Affiliation(s)
- Zdravko Baruch
- School of Biological Sciences, University of Adelaide, Adelaide, SA, 5005, Australia
| | - Craig Liddicoat
- School of Public Health, University of Adelaide, Adelaide, SA, 5005, Australia; College of Science and Engineering, Flinders University, Adelaide, SA, 5042 Australia
| | | | - Mark Laws
- School of Biological Sciences, University of Adelaide, Adelaide, SA, 5005, Australia
| | - Hamish Morelli
- School of Biological Sciences, University of Adelaide, Adelaide, SA, 5005, Australia
| | - Philip Weinstein
- School of Biological Sciences, University of Adelaide, Adelaide, SA, 5005, Australia; School of Public Health, University of Adelaide, Adelaide, SA, 5005, Australia
| | - Jennifer M Young
- College of Science and Engineering, Flinders University, Adelaide, SA, 5042 Australia
| | - Martin F Breed
- College of Science and Engineering, Flinders University, Adelaide, SA, 5042 Australia.
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Heklau H, Schindler N, Buscot F, Eisenhauer N, Ferlian O, Prada Salcedo LD, Bruelheide H. Mixing tree species associated with arbuscular or ectotrophic mycorrhizae reveals dual mycorrhization and interactive effects on the fungal partners. Ecol Evol 2021; 11:5424-5440. [PMID: 34026018 PMCID: PMC8131788 DOI: 10.1002/ece3.7437] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/14/2020] [Revised: 02/22/2021] [Accepted: 02/26/2021] [Indexed: 11/29/2022] Open
Abstract
Recent studies found that the majority of shrub and tree species are associated with both arbuscular mycorrhizal (AM) and ectomycorrhizal (EM) fungi. However, our knowledge on how different mycorrhizal types interact with each other is still limited. We asked whether the combination of hosts with a preferred association with either AM or EM fungi increases the host tree roots' mycorrhization rate and affects AM and EM fungal richness and community composition.We established a tree diversity experiment, where five tree species of each of the two mycorrhiza types were planted in monocultures, two-species and four-species mixtures. We applied morphological assessment to estimate mycorrhization rates and next-generation molecular sequencing to quantify mycobiont richness.Both the morphological and molecular assessment revealed dual-mycorrhizal colonization in 79% and 100% of the samples, respectively. OTU community composition strongly differed between AM and EM trees. While host tree species richness did not affect mycorrhization rates, we observed significant effects of mixing AM- and EM-associated hosts in AM mycorrhization rate. Glomeromycota richness was larger in monotypic AM tree combinations than in AM-EM mixtures, pointing to a dilution or suppression effect of AM by EM trees. We found a strong match between morphological quantification of AM mycorrhization rate and Glomeromycota richness. Synthesis. We provide evidence that the combination of hosts differing in their preferred mycorrhiza association affects the host's fungal community composition, thus revealing important biotic interactions among trees and their associated fungi.
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Affiliation(s)
- Heike Heklau
- Institute of Biology/Geobotany and Botanical GardenMartin Luther University Halle‐WittenbergHalle (Saale)Germany
| | - Nicole Schindler
- Institute of Biology/Geobotany and Botanical GardenMartin Luther University Halle‐WittenbergHalle (Saale)Germany
| | - François Buscot
- Department of Soil EcologyHelmholtz Centre for Environmental Research – UFZHalle (Saale)Germany
- German Centre for Integrative Biodiversity Research (iDiv) Halle‐Jena‐LeipzigLeipzigGermany
| | - Nico Eisenhauer
- German Centre for Integrative Biodiversity Research (iDiv) Halle‐Jena‐LeipzigLeipzigGermany
- Institute of BiologyLeipzig UniversityLeipzigGermany
| | - Olga Ferlian
- German Centre for Integrative Biodiversity Research (iDiv) Halle‐Jena‐LeipzigLeipzigGermany
- Institute of BiologyLeipzig UniversityLeipzigGermany
| | - Luis D. Prada Salcedo
- Department of Soil EcologyHelmholtz Centre for Environmental Research – UFZHalle (Saale)Germany
| | - Helge Bruelheide
- Institute of Biology/Geobotany and Botanical GardenMartin Luther University Halle‐WittenbergHalle (Saale)Germany
- German Centre for Integrative Biodiversity Research (iDiv) Halle‐Jena‐LeipzigLeipzigGermany
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Zhang M, Shi Z, Yang M, Lu S, Cao L, Wang X. Molecular Diversity and Distribution of Arbuscular Mycorrhizal Fungi at Different Elevations in Mt. Taibai of Qinling Mountain. Front Microbiol 2021; 12:609386. [PMID: 33746912 PMCID: PMC7974767 DOI: 10.3389/fmicb.2021.609386] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/23/2020] [Accepted: 02/01/2021] [Indexed: 01/20/2023] Open
Abstract
Arbuscular mycorrhizal fungi (AMFs) play a vital role in ecosystems, especially in ecosystem variability, diversity, and function. Understanding the AMF diversity, distribution, and their driver at different altitudinal gradients is a benefit for understanding the ecological function of AMF in mountain ecosystems. In this study, we explored the AMF molecular diversity and their distribution from 660 to 3,500 m a.s.l. in Mount Taibai of Qinling Mountains based on high-throughput sequencing technology. A total of 702 operational taxonomic units (OTUs) in 103 species of AMF are isolated from soil samples, which belong to 18 identified and 1 unidentified genus in 10 families. The fungi in the genus of Glomus is the most dominant, with the occurrence frequency of 100% and the relative abundance of 42.268% and 33.048% on the species and OTU level, respectively. The AMF colonization in root could be simulated by a cubic function with the change of altitudes with the peak and trough at a.s.l. 1,170 and 2,850 m, respectively. Further, AMF diversity indices including Sob, Shannon diversity, and Pielou evenness also showed the same cubic function change trends with increasing altitude at OTU and species levels. However, the average values of diversity indices at OTU level are always higher than these at the species level. Based on the OTU level, the highest and lowest values of Shannon and Pielou indices are observed at the altitudes of 1,400 and 2,800 m, respectively. The pattern of AMF community distribution in Mt. Taibai is driven by altitude with the characteristics of more abundance in the medium- to low-altitude than high-altitude areas. In general, abundant AMF molecular diversity and species exit in different elevations of Mt. Taibai, which indicate gradient changes with elevations.
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Affiliation(s)
- Mengge Zhang
- College of Agriculture, Henan University of Science and Technology, Luoyang, China
- Luoyang Key Laboratory of Symbiotic Microorganism and Green Development, Luoyang, China
- Henan Engineering Research Center of Human Settlements, Luoyang, China
| | - Zhaoyong Shi
- College of Agriculture, Henan University of Science and Technology, Luoyang, China
- Luoyang Key Laboratory of Symbiotic Microorganism and Green Development, Luoyang, China
- Henan Engineering Research Center of Human Settlements, Luoyang, China
| | - Mei Yang
- College of Agriculture, Henan University of Science and Technology, Luoyang, China
- Luoyang Key Laboratory of Symbiotic Microorganism and Green Development, Luoyang, China
- Henan Engineering Research Center of Human Settlements, Luoyang, China
| | - Shichuan Lu
- College of Agriculture, Henan University of Science and Technology, Luoyang, China
- Luoyang Key Laboratory of Symbiotic Microorganism and Green Development, Luoyang, China
- Henan Engineering Research Center of Human Settlements, Luoyang, China
| | - Libing Cao
- College of Agriculture, Henan University of Science and Technology, Luoyang, China
| | - Xugang Wang
- College of Agriculture, Henan University of Science and Technology, Luoyang, China
- Luoyang Key Laboratory of Symbiotic Microorganism and Green Development, Luoyang, China
- Henan Engineering Research Center of Human Settlements, Luoyang, China
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Ma X, Geng Q, Zhang H, Bian C, Chen HYH, Jiang D, Xu X. Global negative effects of nutrient enrichment on arbuscular mycorrhizal fungi, plant diversity and ecosystem multifunctionality. THE NEW PHYTOLOGIST 2021; 229:2957-2969. [PMID: 33188641 DOI: 10.1111/nph.17077] [Citation(s) in RCA: 36] [Impact Index Per Article: 12.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/02/2020] [Accepted: 11/06/2020] [Indexed: 06/11/2023]
Abstract
Despite widespread anthropogenic nutrient enrichment, it remains unclear how nutrient enrichment influences plant-arbuscular mycorrhizal fungi (AMF) symbiosis and ecosystem multifunctionality at the global scale. Here, we conducted a meta-analysis to examine the worldwide effects of nutrient enrichment on AMF and plant diversity and ecosystem multifunctionality using data of field experiments from 136 papers. Our analyses showed that nutrient addition simultaneously decreased AMF diversity and abundance belowground and plant diversity aboveground at the global scale. The decreases in AMF diversity and abundance associated with nutrient addition were more pronounced with increasing experimental duration, mean annual temperature (MAT) and mean annual precipitation (MAP). Nutrient addition-induced changes in soil pH and available phosphorus (P) predominantly regulated the responses of AMF diversity and abundance. Furthermore, AMF diversity correlated with ecosystem multifunctionality under nutrient addition worldwide. Our findings identify the negative effects of nutrient enrichment on AMF and plant diversity and suggest that AMF diversity is closely linked with ecosystem function. This study offers an important advancement in our understanding of plant-AMF interactions and their likely responses to ongoing global change.
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Affiliation(s)
- Xiaocui Ma
- Department of Ecology, Co-Innovation Center for Sustainable Forestry in Southern China, Nanjing Forestry University, Nanjing, Jiangsu, 210037, China
| | - Qinghong Geng
- Department of Ecology, Co-Innovation Center for Sustainable Forestry in Southern China, Nanjing Forestry University, Nanjing, Jiangsu, 210037, China
| | - Huiguang Zhang
- Center for Scientific Research and Monitoring, Wuyishan National Park, Wuyishan, Fujian, 354300, China
| | - Chenyu Bian
- Tiantong National Forest Ecosystem Observation and Research Station, School of Ecological and Environmental Sciences, East China Normal University, Shanghai, 200241, China
| | - Han Y H Chen
- Faculty of Natural Resources Management, Lakehead University, 955 Oliver Rd, Thunder Bay, ON, P7B 5E1, Canada
| | - Dalong Jiang
- Department of Ecology, Co-Innovation Center for Sustainable Forestry in Southern China, Nanjing Forestry University, Nanjing, Jiangsu, 210037, China
| | - Xia Xu
- Department of Ecology, Co-Innovation Center for Sustainable Forestry in Southern China, Nanjing Forestry University, Nanjing, Jiangsu, 210037, China
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Van't Padje A, Oyarte Galvez L, Klein M, Hink MA, Postma M, Shimizu T, Kiers ET. Temporal tracking of quantum-dot apatite across in vitro mycorrhizal networks shows how host demand can influence fungal nutrient transfer strategies. THE ISME JOURNAL 2021; 15:435-449. [PMID: 32989245 PMCID: PMC8027207 DOI: 10.1038/s41396-020-00786-w] [Citation(s) in RCA: 25] [Impact Index Per Article: 8.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 05/19/2020] [Revised: 09/04/2020] [Accepted: 09/17/2020] [Indexed: 11/18/2022]
Abstract
Arbuscular mycorrhizal fungi function as conduits for underground nutrient transport. While the fungal partner is dependent on the plant host for its carbon (C) needs, the amount of nutrients that the fungus allocates to hosts can vary with context. Because fungal allocation patterns to hosts can change over time, they have historically been difficult to quantify accurately. We developed a technique to tag rock phosphorus (P) apatite with fluorescent quantum-dot (QD) nanoparticles of three different colors, allowing us to study nutrient transfer in an in vitro fungal network formed between two host roots of different ages and different P demands over a 3-week period. Using confocal microscopy and raster image correlation spectroscopy, we could distinguish between P transfer from the hyphae to the roots and P retention in the hyphae. By tracking QD-apatite from its point of origin, we found that the P demands of the younger root influenced both: (1) how the fungus distributed nutrients among different root hosts and (2) the storage patterns in the fungus itself. Our work highlights that fungal trade strategies are highly dynamic over time to local conditions, and stresses the need for precise measurements of symbiotic nutrient transfer across both space and time.
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Affiliation(s)
- Anouk Van't Padje
- Laboratory of Genetics, Wageningen University & Research, Droevendaalsesteeg 1, 6708 PB, Wageningen, The Netherlands.
- Department of Ecological Sciences, Faculty of Earth and Life Sciences, Vrije Universiteit Amsterdam, de Boelelaan 1085, 1081 HV, Amsterdam, The Netherlands.
| | - Loreto Oyarte Galvez
- Department of Ecological Sciences, Faculty of Earth and Life Sciences, Vrije Universiteit Amsterdam, de Boelelaan 1085, 1081 HV, Amsterdam, The Netherlands
- AMOLF Institute, Science Park 104, 1098 XG, Amsterdam, The Netherlands
| | - Malin Klein
- Department of Ecological Sciences, Faculty of Earth and Life Sciences, Vrije Universiteit Amsterdam, de Boelelaan 1085, 1081 HV, Amsterdam, The Netherlands
| | - Mark A Hink
- Section of Molecular Cytology, van Leeuwenhoek Centre for Advanced Microscopy, Faculty of Science, University of Amsterdam, Science park 904, 1090 GE, Amsterdam, The Netherlands
| | - Marten Postma
- Section of Molecular Cytology, van Leeuwenhoek Centre for Advanced Microscopy, Faculty of Science, University of Amsterdam, Science park 904, 1090 GE, Amsterdam, The Netherlands
| | - Thomas Shimizu
- AMOLF Institute, Science Park 104, 1098 XG, Amsterdam, The Netherlands
| | - E Toby Kiers
- Department of Ecological Sciences, Faculty of Earth and Life Sciences, Vrije Universiteit Amsterdam, de Boelelaan 1085, 1081 HV, Amsterdam, The Netherlands
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Wang G, Bei S, Li J, Bao X, Zhang J, Schultz PA, Li H, Li L, Zhang F, Bever JD, Zhang J. Soil microbial legacy drives crop diversity advantage: Linking ecological plant–soil feedback with agricultural intercropping. J Appl Ecol 2020. [DOI: 10.1111/1365-2664.13802] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/16/2023]
Affiliation(s)
- Guangzhou Wang
- College of Resources and Environmental Sciences China Agricultural University Beijing China
- Kansas Biological Survey University of Kansas Lawrence KS USA
| | - Shuikuan Bei
- College of Resources and Environmental Sciences China Agricultural University Beijing China
| | - Jianpeng Li
- College of Resources and Environmental Sciences China Agricultural University Beijing China
| | - Xingguo Bao
- Institute of Soils and Fertilizers Gansu Academy of Agricultural Sciences Lanzhou China
| | - Jiudong Zhang
- Institute of Soils and Fertilizers Gansu Academy of Agricultural Sciences Lanzhou China
| | | | - Haigang Li
- College of Grassland, Resources and Environment Inner Mongolia Agricultural University Hohhot China
| | - Long Li
- College of Resources and Environmental Sciences China Agricultural University Beijing China
| | - Fusuo Zhang
- College of Resources and Environmental Sciences China Agricultural University Beijing China
| | - James D. Bever
- Kansas Biological Survey University of Kansas Lawrence KS USA
- Department of Ecology and Evolutionary Biology University of Kansas Lawrence KS USA
| | - Junling Zhang
- College of Resources and Environmental Sciences China Agricultural University Beijing China
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46
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Han Y, Feng J, Han M, Zhu B. Responses of arbuscular mycorrhizal fungi to nitrogen addition: A meta-analysis. GLOBAL CHANGE BIOLOGY 2020; 26:7229-7241. [PMID: 32981218 DOI: 10.1111/gcb.15369] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/11/2020] [Accepted: 09/11/2020] [Indexed: 05/02/2023]
Abstract
Arbuscular mycorrhizal (AM) fungi play important roles in carbon (C), nitrogen (N) and phosphorus (P) cycling of terrestrial ecosystems. The impact of increasing N deposition on AM fungi will inevitably affect ecosystem processes. However, generalizable patterns of how N deposition affects AM fungi remains poorly understood. Here we conducted a global-scale meta-analysis from 94 publications and 101 sites to investigate the responses of AM fungi to N addition, including abundance in both intra-radical (host roots) and extra-radical portion (soil), richness and diversity. We also explored the mechanisms of N addition affecting AM fungi by the trait-based guilds method. Results showed that N addition significantly decreased AM fungal overall abundance (-8.0%). However, the response of abundance in intra-radical portion was not consistent with that in extra-radical portion: root colonization decreased (-11.6%) significantly, whereas extra-radical hyphae length density did not change significantly. Different AM fungal guilds showed different responses to N addition: both the abundance (spore density) and relative abundance of the rhizophilic guild decreased significantly under N addition (-29.8% and -12.0%, respectively), while the abundance and relative abundance of the edaphophilic guild had insignificant response to N addition. Such inconsistent responses of rhizophilic and edaphophilic guilds were mainly moderated by the change of soil pH and the response of root biomass, respectively. Moreover, N addition had an insignificant negative effect on AM fungal richness and diversity, which was strongly related with the relative availability of soil P (i.e. soil available N/P ratio). Collectively, this meta-analysis highlights that considering trait-based AM fungal guilds, soil P availability and host plant C allocation can greatly improve our understanding of the nuanced dynamics of AM fungal communities under increasing N deposition.
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Affiliation(s)
- Yunfeng Han
- Institute of Ecology, College of Urban and Environmental Sciences, and Key Laboratory for Earth Surface Processes of the Ministry of Education, Peking University, Beijing, China
| | - Jiguang Feng
- Institute of Ecology, College of Urban and Environmental Sciences, and Key Laboratory for Earth Surface Processes of the Ministry of Education, Peking University, Beijing, China
| | - Mengguang Han
- Institute of Ecology, College of Urban and Environmental Sciences, and Key Laboratory for Earth Surface Processes of the Ministry of Education, Peking University, Beijing, China
| | - Biao Zhu
- Institute of Ecology, College of Urban and Environmental Sciences, and Key Laboratory for Earth Surface Processes of the Ministry of Education, Peking University, Beijing, China
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Kokkoris V, Lekberg Y, Antunes PM, Fahey C, Fordyce JA, Kivlin SN, Hart MM. Codependency between plant and arbuscular mycorrhizal fungal communities: what is the evidence? THE NEW PHYTOLOGIST 2020; 228:828-838. [PMID: 32452032 DOI: 10.1111/nph.16676] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/26/2020] [Accepted: 04/26/2020] [Indexed: 05/09/2023]
Abstract
That arbuscular mycorrhizal (AM) fungi covary with plant communities is clear, and many papers report nonrandom associations between symbiotic partners. However, these studies do not test the causal relationship, or 'codependency', whereby the composition of one guild affects the composition of the other. Here we outline underlying requirements for codependency, compare important drivers for both plant and AM fungal communities, and assess how host preference - a pre-requisite for codependency - changes across spatiotemporal scales and taxonomic resolution for both plants and AM fungi. We find few examples in the literature designed to test for codependency and those that do have been conducted within plots or mesocosms. Also, while plants and AM fungi respond similarly to coarse environmental filters, most variation remains unexplained, with host identity explaining less than 30% of the variation in AM fungal communities. These results combined question the likelihood of predictable co-occurrence, and therefore evolution of codependency, between plant and AM fungal taxa across locations. We argue that codependency is most likely to occur in homogeneous environments where specific plant - AM fungal pairings have functional consequences for the symbiosis. We end by outlining critical aspects to consider moving forward.
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Affiliation(s)
- Vasilis Kokkoris
- Department of Biology, University of Ottawa, Ottawa, ON, K1N 6N5, Canada
| | - Ylva Lekberg
- MPG Ranch and University of Montana, Missoula, MT, 59833, USA
| | - Pedro M Antunes
- Department of Biology, Algoma University, Sault Ste. Marie, ON, P6A 2G4, Canada
| | - Catherine Fahey
- Department of Biology, Algoma University, Sault Ste. Marie, ON, P6A 2G4, Canada
| | - James A Fordyce
- Ecology and Evolutionary Biology, University of Tennessee, Knoxville, Knoxville, TN, 37996, USA
| | - Stephanie N Kivlin
- Ecology and Evolutionary Biology, University of Tennessee, Knoxville, Knoxville, TN, 37996, USA
| | - Miranda M Hart
- Biology, University of British Columbia Okanagan, Kelowna, BC, V1V 1V7, Canada
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Nemadodzi LE, Vervoort J, Prinsloo G. NMR-Based Metabolomic Analysis and Microbial Composition of Soil Supporting Burkea africana Growth. Metabolites 2020; 10:E402. [PMID: 33050369 PMCID: PMC7600111 DOI: 10.3390/metabo10100402] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/01/2020] [Revised: 09/14/2020] [Accepted: 09/21/2020] [Indexed: 11/17/2022] Open
Abstract
Burkea africana is a leguminous tree used for medicinal purposes, growing in clusters, on soils impoverished from most nutrients. The study aimed to determine the factors responsible for successful reproduction and establishment of the B. africana trees in nature, as all efforts for commercial production has been proven unsuccessful. An investigation was carried out to determine the metabolomic profile, chemical composition, and microbial composition of the soils where B. africana grows (Burkea soil) versus the soil where it does not grow (non-Burkea soil). 1H-NMR metabolomic analysis showed different metabolites in the respective soils. Trehalose and betaine, as well as a choline-like and carnitine-like compound, were found to be in higher concentration in Burkea soils, whereas, acetate, lactate, and formate were concentrated in non-Burkea soils. Liquid Chromatography-Mass Spectrometry analysis revealed the presence of numerous amino acids such as aspartic acid and glutamine to be higher in Burkea soils. Since it was previously suggested that the soil microbial diversity is the major driver for establishment and survival of seedlings in nature, Deoxyribonucleic acid (DNA) was extracted and a BLAST analysis conducted for species identification. Penicillium species was found to be highly prevalent and discriminant between the two soils, associated with the Burkea soils. No differences in the bacterial composition of Burkea and non-Burkea soils were observed. The variances in fungal composition suggests that species supremacy play a role in development of B. africana trees and is responsible for creating a supporting environment for natural establishment and survival of seedlings.
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Affiliation(s)
- Lufuno Ethel Nemadodzi
- Department of Agriculture and Animal Health, University of South Africa, Science Campus, Florida, Johannesburg 1710, South Africa;
- ABBERU, University of South Africa, Science Campus, Florida, Johannesburg 1710, South Africa
| | - Jacques Vervoort
- Laboratory of Biochemistry, Wageningen University, 6708 PB Wageningen, The Netherlands;
| | - Gerhard Prinsloo
- Department of Agriculture and Animal Health, University of South Africa, Science Campus, Florida, Johannesburg 1710, South Africa;
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Baruch Z, Liddicoat C, Laws M, Kiri Marker L, Morelli H, Yan D, Young JM, Breed MF. Characterising the soil fungal microbiome in metropolitan green spaces across a vegetation biodiversity gradient. FUNGAL ECOL 2020. [DOI: 10.1016/j.funeco.2020.100939] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/22/2023]
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Marí T, Castaño C, Rodríguez A, Ibáñez M, Lobo A, Sebastià MT. Fairy rings harbor distinct soil fungal communities and high fungal diversity in a montane grassland. FUNGAL ECOL 2020. [DOI: 10.1016/j.funeco.2020.100962] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/16/2023]
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