Plant root and mycorrhizal fungal traits for understanding soil aggregation

Soil properties explain the variability in tire wear particle effects in soil based on a laboratory test with 59 soils

Tire wear particles (TWPs) are among the most prevalent microplastics in the environment, with potential detrimental effects on ecosystem health and functionality. While little is known how the effects of TWPs on soil physicochemical and microbial properties vary across different soil types, and if so, which factors contribute to this variability. To address this knowledge gap, we conducted a laboratory experiment involving soils from 59 grassland plots across two sampling regions in Germany, each experienced varying land-use intensities. These soils were treated with (at a concentration of 10 mg g-1) and without TWPs. At harvest, we measured soil water-stable aggregates (WSA), pH, respiration, and decomposition rate. Our results revealed that TWPs negatively, neutrally, or positively impacted these parameters depending on soil types. Random forest analysis indicated that the variability in TWP effects was significantly explained by grazing frequency for WSA (14.5 %), by clay content for pH (9 %), by bulk density for respiration (7.9 %), and by silt content for decomposition rate (12 %). Partial dependence analysis and piecewise regression further suggested that low-intensity grazing (∼0.7-1.2) reduced TWP effects on WSA; clay content (420-550 g kg-1) increased TWP effects on pH; bulk density (0.75-0.88) decreased TWP effects, and silt content (460-620 g kg-1) enhanced TWP effects on decomposition rate, with the identified thresholds of 1.45, 353 g kg-1, 0.84, and 327 353 g kg-1, respectively. These results highlighted the context-dependent nature of TWP pollution, with significant variability observed across different sampling points. Additionally, our findings suggest that TWP pollution is particularly of concern in soils with high clay, silt, high bulk density, and areas with intensive land-use intensity. Our study contributes to a better understanding of the mechanisms by which TWPs impact soil, and how these effects are regulated by environmental factors.

Rhizobacteria and Arbuscular Mycorrhizal Fungi (AMF) Community in Growth Management and Mitigating Stress in Millets: A Plant-Soil Microbe Symbiotic Relationship

Millets, commonly referred to as the "future crop," provide a practical solution for addressing hunger and reducing the impact of climate change. The nutritional and physiological well-being of soil is crucial for the survival and resilience of plants while countering environmental stressors, both abiotic and biotic, that arise from the current climate change scenario. The health and production of millet are directly influenced by the soil microbial community. Millets have several plant growth-promoting rhizobacteria such as Pseudomonas, Azotobacter, Bacillus, Rhizobium, and fungi like Penicillium sp., that increase nutrient uptake, growth, and productivity and protect against abiotic and biotic stressors. Rhizobacteria enhance plant productivity by many mechanisms, including the release of plant hormones and secondary metabolic compounds, the conversion of nutrients into soluble forms, the ability to fix nitrogen, and the provision of resistance to both biotic and abiotic stresses. The microbial populations in the rhizosphere have a significant impact on the growth and production of millet such as enhancing soil fertility and plant nourishment. Additionally, arbuscular mycorrhizal fungi invade the roots of millets. The taxon Glomus is the most prevalent in association with millet plant soil, followed by Acaulospora, Funneliformis, and Rhizophagus. The symbiotic relationship between arbuscular mycorrhizal fungi and millet plants improves plant growth and nutrient absorption under diverse soil and environmental circumstances, including challenging abiotic factors like drought and salinity.

Long-Term Crop Rotation Revealed the Relationship Between Soil Organic Carbon Physical Fraction and Bacterial Community at Aggregate Scales

Crop rotation enhances soil fertility and health by modulating microbial communities, with soil organic carbon (SOC) dynamics governed by aggregate-microbial interplay. To date, the effects of different crop rotations on SOC fractions and relevant bacterial communities at aggregate scales remain uncertain. Here, a 17-year field experiment was used to reveal the effects of maize monoculture (MM), soybean monoculture (SS), and maize and soybean rotation on the SOC fractions and bacterial communities. Compared with the SS treatment, only the MS treatment significantly increased the particulate organic carbon (POC) content at the aggregate scale. Nevertheless, higher mineral-associated organic carbon (MaOC) contents were observed under the MS and MM treatments than under the SS treatment. The microbial co-occurrence networks for macro- and microaggregates were divided into three main ecological clusters. The specific taxa in Cluster 1 and Cluster 2 are involved in SOC fraction turnover within macro- and microaggregates, respectively. In total, the Vicinamibacteraceae-driven Cluster 1 community dominated the MaOC turnover process within macroaggregates, whereas the Actinobacteria- and Pyrinomonadaceae-driven Cluster 2 communities changed the MaOC turnover process within microaggregates. This study strengthens our understanding of the role of the microbial community in the accumulation of SOC fractions under different crop rotation practices.

Fungal-mediated soil aggregation as a mechanism for carbon stabilization

Soils can potentially be turned into net carbon sinks for atmospheric carbon to offset anthropogenic greenhouse gas emissions. Occlusion of soil organic carbon in soil aggregates is a key mechanism, which temporarily protects it from decomposition by soil organisms. Filamentous fungi are recognized for their positive role in the formation and stabilization of aggregates. In this review, we assess the current knowledge of the contribution of fungi to soil aggregation and set a new research agenda to quantify fungal-mediated aggregation across different climates and soils. Our review highlights three main knowledge gaps: (1) the lack of quantitative data and mechanistic understanding of aggregate turnover under field conditions, (2) lack of data on the biochemical and biological mechanisms by which filamentous fungi influence soil aggregation, and (3) uncharacterized contribution of soil fungi across environments. Adopting a trait-based approach to increase the level of mechanistic understanding between fungal diversity and soil structure seems promising, but will need additional experiments in which fungal diversity is manipulated by either removal through sieving or dilution, or addition through using synthetic communities of cultured fungi. We stress the importance of integrating ecological and physicochemical perspectives for accurate modelling of soil aggregation and soil organic carbon cycling, which is needed to successfully predict the effects of land management strategies.

Miscanthus sp. root exudate alters rhizosphere microbial community to drive soil aggregation for heavy metal immobilization

The heavy metals (HMs) spatial distribution in soil is intricately shaped by aggregation processes involving chemical reactions and biological activities, which modulate HMs toxicity, migration, and accumulation. Pioneer plants play a central role in preventing HMs at source, yet the precise mechanisms underlying their involvement in soil aggregation remain unclear. This study investigates HMs distribution within rhizosphere and bulk soil aggregates of Miscanthus sp. grown in tailings to elucidate the impact of root exudates (REs) and rhizosphere microbes. The results indicate that Miscanthus sp. enhance soil stability, increasing the proportion of macroaggregates by 4.06 %-9.78 %. HMs tend to concentrate in coarse-aggregates, particularly within rhizosphere environments, while diminishing in fine-aggregates. Under HMs stress, lipids and lipid-like molecules are the most abundant REs produced by Miscanthus sp., accounting for under up to 26.74 %. These REs form complex with HMs, promoting microaggregates formation. Charged components such as sugars and amino acids further contribute to soil aggregation. REs also regulates rhizosphere bacteria and fungi, with Acidobacteriota, Chloroflexi were the dominant bacterial phyla, while Ascomycota and Basidiomycota dominate the fungal community. The synergistic effect of REs and microorganisms impact soil organic matter and nutrient content, facilitating HMs nanoparticle heteroaggregation and macroaggregates formation. Consequently, soil structure and REs shape the distribution of HMs in soil aggregation. Pioneer plants mediate REs interaction with rhizosphere microbes, promoting the distribution of HMs into macroaggregates, leading to immobilization. This study sheds light on the role of pioneer plants in regulating soil HMs, offering valuable insights for soil remediation strategies.

Towards Sustainable Productivity of Greenhouse Vegetable Soils: Limiting Factors and Mitigation Strategies

Greenhouse vegetable production has become increasingly important in meeting the increasing global food demand. Yet, it faces severe challenges in terms of how to maintain soil productivity from a long-term perspective. This review discusses the main soil productivity limiting factors for vegetables grown in greenhouses and identifies strategies that attempt to overcome these limitations. The main processes leading to soil degradation include physical (e.g., compaction), chemical (e.g., salinization, acidification, and nutrient imbalances), and biological factors (e.g., biodiversity reduction and pathogen buildup). These processes are often favored by intensive greenhouse cultivation. Mitigation strategies involve managing soil organic matter and mineral nutrients and adopting crop rotation. Future research should focus on precisely balancing soil nutrient supply with vegetable crop demands throughout their life cycle and using targeted organic amendments to manage specific soil properties. To ensure the successful adoption of recommended strategies, socioeconomic considerations are also necessary. Future empirical research is required to adapt socioeconomic frameworks, such as Science and Technology Backyard 2.0, from cereal production systems to greenhouse vegetable production systems. Addressing these issues will enable the productivity of greenhouse vegetable soils that meet growing vegetable demand to be sustained using limited soil resources.

Effects of riparian pioneer plants on soil aggregate stability: Roles of root traits and rhizosphere microorganisms

Pioneer plants are vital in stabilizing soil structure while restoring reservoir drawdown areas. However, uncertainties persist regarding the mechanism of pioneer plants to soil stability in these delicate ecosystems. This study aims to unravel the plant-soil feedback mechanisms from the roles of root traits and rhizosphere microorganisms. We conducted a mesocosm experiment focusing on four common pioneer plants from the drawdown area of Three Gorges Reservoir, China. Using the wet sieving methodology, trait-based approach and high-throughput sequencing technology, we explored soil aggregate stability parameters, plant root traits and rhizosphere microbial communities in experimental plant groups. The interacting effect of pioneer plant species richness, root traits, and rhizosphere microbial communities on soil aggregate stability was quantified by statistical and machine-learning models. Our results demonstrate that diverse pioneer plant communities significantly enhance soil aggregate stability. Notably, specific species, such as Cynodon dactylon (L.) Pers. and Xanthium strumarium L., exert a remarkably strong influence on soil stability due to their distinctive root traits. Root length density (RLD) and root specific surface area (RSA) were identified as crucial root traits mediating the impact of plant diversity on soil aggregate stability. Additionally, our study highlights the link between increased rhizosphere fungal richness, accompanied by plant species richness, and enhanced soil aggregate stability, likely attributable to elevated RLD and RSA. These insights deepen our understanding of the role of pioneer vegetation in soil structure and stability, providing valuable implications for ecological restoration and management practices in reservoir drawdown areas.

Plastic footprint deteriorates dryland carbon footprint across soil-plant-atmosphere continuum

Plastic fragments are widely found in the soil profile of terrestrial ecosystems, forming plastic footprint and posing increasing threat to soil functionality and carbon (C) footprint. It is unclear how plastic footprint affects C cycling, and in particularly permanent C sequestration. Integrated field observations (including 13C labelling) were made using polyethylene and polylactic acid plastic fragments (low-, medium- and high-concentrations as intensifying footprint) landfilling in soil, to track C flow along soil-plant-atmosphere continuum (SPAC). The result indicated that increased plastic fragments substantially reduced photosynthetic C assimilation (p < 0.05), regardless of fragment degradability. Besides reducing C sink strength, relative intensity of C emission increased significantly, displaying elevated C source. Moreover, root C fixation declined significantly from 21.95 to 19.2 mg m-2, and simultaneously root length density, root weight density, specific root length and root diameter and surface area were clearly reduced. Similar trends were observed in the two types of plastic fragments (p > 0.05). Particularly, soil aggregate stability was significantly lowered as affected by plastic fragments, which accelerated the decomposition rate of newly sequestered C (p < 0.05). More importantly, net C rhizodeposition declined averagely from 39.77 to 29.41 mg m-2, which directly led to significant decline of permanent C sequestration in soil. Therefore, increasing plastic footprint considerably worsened C footprint regardless of polythene and biodegradable fragments. The findings unveiled the serious effects of plastic residues on permanent C sequestration across SPAC, implying that current C assessment methods clearly overlook plastic footprint and their global impact effects.

Artificial utilization of saline-sodic land promotes carbon stock: The importance of large macroaggregates

Soil aggregates are essential functional units involved in soil carbon sequestration, particularly in saline-sodic soils prone to severe carbon loss. In the present study, the distribution of aggregate-associated carbon fractions and their influencing factors were investigated after artificial utilization of saline soil in the Songnen Plain, Northeast China. Physicochemical properties, enzymatic activities, and bacterial communities were measured in various hierarchical aggregates among two natural land-use types (saline wasteland and degraded grassland) and three anthropogenic land-use types (artificial forest, upland field, and paddy field). The results indicated that, compared to saline wasteland, anthropogenic land use was witnessed an increase in macroaggregate proportions, and PF in large macroaggregates increased the most, while UF and FL were mainly increased in small macroaggregates. After transforming from natural land to anthropogenic land, the aggregate-associated carbon fractions (total organic carbon, readily soluble organic carbon, dissolved organic carbon, and microbial biomass carbon) increased, especially in small macroaggregates. All enzyme activities increased after artificial utilization, hydrolase (urease, amylase, and invertase), catalase, and β-glucosidase activities were highest in the small macroaggregates. Bacterial biomass was increased in all three aggregate types compared to natural land. Due to the influence of various factors on soil carbon storage, through partial least squares path modeling revealed that large macroaggregates were conducive to carbon storage. These findings suggested that artificial utilization of saline soil can increase large macroaggregate proportions and the abundance of aggregate-associated carbon, resulting in increased soil carbon stocks, with PF having the greatest carbon sequestration capacity.

Sludge-based candidate reference materials for enhanced quality control of particulate processes in total organic carbon analysis for wastewater1

Accurate analyses of total organic carbon (TOC) encompassing particulate organic carbon in wastewater are key for evaluating the behavior of particulate organic contaminants and maintaining the carbon mass balance throughout the wastewater treatment process. This study was conducted to develop candidate reference materials of environmental origin from excess sludge collected from wastewater treatment facilities, primarily receiving industrial wastewater and livestock manure as the main sources. Homogeneity and stability assessments for total carbon (TC) and TOC were conducted in the particle samples following the standardized procedures of ISO Guide 35 and ISO 13258. The results showed that high inorganic carbon (IC) content in particles, such as YJ(500) (IC: 29%), rendered them unsuitable for TOC quality control (QC), as they increased uncertainty in both homogeneity and stability assessments. Additionally, a13C NMR analysis revealed that samples with a high (O-alkyl)/(C-H-alkyl) ratio in their carbon structures exhibited relatively low stability. Through the homogeneity and stability assessments, a particle sample, YJ(100), was selected as the reference material (RM); the assigned values were as follows: 30.78% for TC and 27.94% for TOC, with uncertainties of 0.01% and 1.1%, respectively. Furthermore, considering sample transportation conditions, the safe storage period for the RM particles was determined to be 2 weeks under harsh conditions (at 40 °C). In our inter-laboratory test (n = 8) using the particle samples, we confirmed that the particle samples can effectively enhance particle processing QC and validate a proposed suspended solids pretreatment method. This study showcases valuable environmental particle sample production and evaluation, offering potential advancements in the QC of TOC analysis for wastewater samples.

The hidden roots of wetland methane emissions

Wetlands are the largest natural source of methane (CH4 ) globally. Climate and land use change are expected to alter CH4 emissions but current and future wetland CH4 budgets remain uncertain. One important predictor of wetland CH4 flux, plants, play an important role in providing substrates for CH4 -producing microbes, increasing CH4 consumption by oxygenating the rhizosphere, and transporting CH4 from soils to the atmosphere. Yet, there remain various mechanistic knowledge gaps regarding the extent to which plant root systems and their traits influence wetland CH4 emissions. Here, we present a novel conceptual framework of the relationships between a range of root traits and CH4 processes in wetlands. Based on a literature review, we propose four main CH4 -relevant categories of root function: gas transport, carbon substrate provision, physicochemical influences and root system architecture. Within these categories, we discuss how individual root traits influence CH4 production, consumption, and transport (PCT). Our findings reveal knowledge gaps concerning trait functions in physicochemical influences, and the role of mycorrhizae and temporal root dynamics in PCT. We also identify priority research needs such as integrating trait measurements from different root function categories, measuring root-CH4 linkages along environmental gradients, and following standardized root ecology protocols and vocabularies. Thus, our conceptual framework identifies relevant belowground plant traits that will help improve wetland CH4 predictions and reduce uncertainties in current and future wetland CH4 budgets.

Combined application of up to ten pesticides decreases key soil processes

Natural systems are under increasing pressure by a range of anthropogenic global change factors. Pesticides represent a nearly ubiquitously occurring global change factor and have the potential to affect soil functions. Currently the use of synthetic pesticides is at an all-time high with over 400 active ingredients being utilized in the EU alone, with dozens of these pesticides occurring concurrently in soil. However, we presently do not understand the impacts of the potential interaction of multiple pesticides when applied simultaneously. Using soil collected from a local grassland, we utilize soil microcosms to examine the role of both rate of change and number of a selection of ten currently used pesticides on soil processes, including litter decomposition, water stable aggregates, aggregate size, soil pH, and EC. Additionally, we used null models to enrich our analyses to examine potential patterns caused by interactions between pesticide treatments. We find that both gradual and abrupt pesticide application have negative consequences for soil processes. Notably, pesticide number plays a significant role in affecting soil health. Null models also reveal potential synergistic behavior between pesticides which can further their consequences on soil processes. Our research highlights the complex impacts of pesticides, and the need for environmental policy to address the threats posed by pesticides.

Defoliation and fertilisation differentially moderate root trait effects on soil abiotic and biotic properties

Root functional traits are known to influence soil properties that underpin ecosystem functioning. Yet few studies have explored how root traits simultaneously influence physical, chemical, and biological properties of soil, or how these responses are modified by common grassland perturbations that shape roots, such as defoliation and fertilisation.Here, we explored how root traits of a wide range of grassland plant species with contrasting resource acquisition strategies (i.e. conservative vs. exploitative strategy plant species) respond to defoliation and fertilisation individually and in combination, and examined cascading impacts on a range of soil abiotic and biotic properties that underpin ecosystem functioning.We found that the amplitude of the response of root traits to defoliation and fertilisation varied among plant species, in most cases independently of plant resource acquisition strategies. However, the direction of the root trait responses (increase or decrease) to perturbations was consistent across all plant species, with defoliation and fertilisation exerting opposing effects on root traits. Specific root length increased relative to non-perturbed control in response to defoliation, while root biomass, root mass density, and root length density decreased. Fertilisation induced the opposite responses. We also found that both defoliation and fertilisation individually enhanced the role of root traits in regulating soil biotic and abiotic properties, especially soil aggregate stability. Synthesis: Our results indicate that defoliation and fertilisation, two common grassland perturbations, have contrasting impacts on root traits of grassland plant species, with direct and indirect short-term consequences for a wide range of soil abiotic and biotic properties that underpin ecosystem functioning.

Green trees preservation: A sustainable source of valuable mushrooms for Ethiopian local communities

In Ethiopia, Pinus radiata and Pinus patula are extensively cultivated. Both plantations frequently serve as habitats for edible fungi, providing economic and ecological importance. Our study aims were: (i) to investigate how plantation age and tree species influence the variety of edible fungi and sporocarps production; (ii) to determine edaphic factors contributing to variations in sporocarps composition; and (iii) to establish a relationship between the most influencing edaphic factors and the production of valuable edible mushrooms for both plantation types. Sporocarps were collected weekly from permanent plots (100 m2) established in 5-, 14-, and 28-year-old stands of both species in 2020. From each plot, composite soil samples were also collected to determine explanatory edaphic variables for sporocarps production and composition. A total of 24 edible species, comprising 21 saprophytic and three ectomycorrhizal ones were identified. Agaricus campestroides, Morchella sp., Suillus luteus, Lepista sordida, and Tylopilus niger were found in both plantations. Sporocarp yields showed significant variation, with the highest mean production in 28-year-old stands of both Pinus stands. Differences in sporocarps variety were also observed between the two plantations, influenced by factors such as pH, nitrogen, phosphorus, potassium, and cation exchange capacity. Bovista dermoxantha, Coprinellus domesticus, and A. campestroides made contributions to the variety. The linear regression models indicated that the abundance of specific fungi was significantly predicted by organic matter. This insight into the nutrient requirements of various fungal species can inform for a better plantation management to produce both wood and non-wood forest products. Additionally, higher sporocarps production in older stands suggests that retaining patches of mature trees after the final cut can enhance fungal habitat, promoting diversity and yield. Thus, implementing this approach could provide supplementary income opportunities from mushroom sales and enhance the economic outputs of plantations, while mature trees could serve as a source of fungal inoculum for new plantations.

The role of arbuscular mycorrhizal symbiosis in improving plant water status under drought

Arbuscular mycorrhizal fungi (AMF) have been presumed to ameliorate crop tolerance to drought. Here, we review the role of AMF in maintaining water supply to plants from drying soils and the underlying biophysical mechanisms. We used a soil-plant hydraulic model to illustrate the impact of several AMF mechanisms on plant responses to edaphic drought. The AMF enhance the soil's capability to transport water and extend the effective root length, thereby attenuating the drop in matric potential at the root surface during soil drying. The synthesized evidence and the corresponding simulations demonstrate that symbiosis with AMF postpones the stress onset limit, which is defined as the disproportionality between transpiration rates and leaf water potentials, during soil drying. The symbiosis can thus help crops survive extended intervals of limited water availability. We also provide our perspective on future research needs and call for reconciling the dynamic changes in soil and root hydraulics in order to better understand the role of AMF in plant water relations in the face of climate changes.

The Effect of Various Forms of Sulfur on Soil Organic Matter Fractions and Microorganisms in a Pot Experiment with Perennial Ryegrass (Lolium perenne L.)

This article focuses on the agronomic evaluation of the supplementation of mineral NPKMg fertilizers with elemental sulfur, magnesium, potassium, or ammonium sulfates in pot experiments with ryegrass growing in a sandy Arenosol with very low sulfur content. A benefit evaluation was carried out on the basis of biomass production, crop nutritional status, and changes in the content of soil organic matter fractions. Furthermore, the total number of bacteria, nitrogen-fixing bacteria, and fungi was estimated using the qPCR technique in soil samples after 60 days of ryegrass growth. The combined application of NPKMg and sulfur or sulfate fertilizers significantly increased the summary yield of three cuttings of fresh ryegrass biomass in the range of 32.3% to 82.7%. The application, especially in the form of sulfates, significantly decreased the content of free phenolic acids. Furthermore, compared to the control, i.e., soil with NPKMg applied alone, an increase in the content of glomalin-related proteins and a decrease in the amount of water-soluble organic carbon compounds were observed. Neither the number of DNA marker copy numbers of the total bacterial community nor the nitrogen-fixing bacteria were noticeably different. In turn, the total number of genetic markers for fungi was significantly higher in soils with potassium or ammonium sulfates compared to the control soil. The general results suggest that the application of sulfur fertilizers with NPKMg mineral fertilizer can benefit crops and support soil fertility due to the stabilization of aggregates and the decrease in water-soluble organic compounds.

Veterinary drug albendazole inhibits root colonization and symbiotic function of the arbuscular mycorrhizal fungus Rhizophagus irregularis

Arbuscular mycorrhizal fungi (AMF) are plant symbionts that have a pivotal role in maintaining soil fertility and nutrient cycling. However, these microsymbionts may be exposed to organic pollutants like pesticides or veterinary drugs known to occur in agricultural soils. Anthelminthics are veterinary drugs that reach soils through the application of contaminated manures in agricultural settings. Their presence might threaten the function of AMF, considered as sensitive indicators of the toxicity of agrochemicals to the soil microbiota. We determined the impact of the anthelminthic compounds albendazole and ivermectin on the establishment and functionality of the symbiosis between the model-legume Lotus japonicus and the AMF Rhizophagus irregularis. Our analyses revealed negative effects of albendazole on the development and functionality of arbuscules, the symbiotic organelle of AMF, at a concentration of 0.75 μg g-1. The impairment of the symbiotic function was verified by the reduced expression of genes SbtM1, PT4 and AMT2;2 involved in arbuscules formation, P and N uptake, and the lower phosphorus shoot content detected in the albendazole-treated plants. Our results provide first evidence for the toxicity of albendazole on the colonization capacity and function of R. irregularis at concentrations that may occur in agricultural soils systematically amended with drug-containing manures.

Multi-factor correlation analysis of the effect of root-promoting practices on tobacco rhizosphere microecology in growth stages

Some agronomic practices not only promote the development of crop roots and increase overall plant performance but also affect colonisation by rhizosphere microorganisms. However, the composition and temporal dynamics of the tobacco rhizosphere microbiota under different root-promoting practices are poorly understood. Here, we characterised the tobacco rhizosphere microbiota at the knee-high, vigorous growing, and maturity stages under the application of potassium fulvic acid (PFA), γ-Polyglutamic acid (PGA), soymilk root irrigation (SRI), and conventional fertilization (CK) and its correlation with root characteristics and soil nutrients. The results showed that three root-promoting practices notably improved the dry and fresh root weights. Total nitrogen and phosphorus, available phosphorus and potassium, and organic matter contents in the rhizosphere markedly increased at the vigorous growing stage. The rhizosphere microbiota was changed through root-promoting practices. However, with tobacco growth, the change of rhizosphere microbiota showed a pattern of slow first and then fast and the microbiota of different treatments gradually approached. SRI reduced plant-pathogenic fungi but increased chemoheterotrophic and phototrophic bacteria, and arbuscular mycorrhizal fungi. PFA and PGA markedly increased arbuscular mycorrhizal and ectomycorrhizal fungi at the knee-high stage, which benefitted tobacco nutrient absorption. The correlation between rhizosphere microorganisms and environmental factors varied at different growth stages. Notably, the rhizosphere microbiota was more sensitive to environmental factors at the vigorous growing stage, and the interactions were more complex than in other stages. Furthermore, a variance partitioning analysis showed that the influence of root-soil interaction on the rhizosphere microbiota increased with tobacco growth. Overall, all three root-promoting practices could improve root characteristics, rhizosphere nutrient, and rhizosphere microbiota to varying degrees and increase the tobacco biomass, among which PGA had the most obvious effect and most suitable for tobacco cultivation. Our findings revealed the role of root-promoting practices in shaping the rhizosphere microbiota during plant growth and elucidated the assembly patterns and environmental drivers of crop rhizosphere microbiota driven by the application of root-promoting practices in agricultural production.

Root traits in response to frequent fires: Implications for belowground carbon dynamics in fire-prone savannas

Predicting how belowground carbon storage reflects changes in aboveground vegetation biomass is an unresolved challenge in most ecosystems. This is especially true for fire-prone savannas, where frequent fires shape the fraction of carbon allocated to root traits for post-fire vegetation recovery. Here I review evidence on how root traits may respond to frequent fires and propose to leverage root traits to infer belowground carbon dynamics in fire-prone savannas. Evidently, we still lack an understanding of trade-offs in root acquisitive vs. conservative traits in response to frequent fires, nor have we determined which root traits are functionally important to mediate belowground carbon dynamics in a frequently burned environment. Focusing research efforts along these topics should improve our understanding of savanna carbon cycling under future changes in fire regimes.

Variations of arbuscular mycorrhizal fungi following succession stages in a tropical lowland rainforest ecosystem of South China

Introduction

The grasslands in the Nature Reserve of Ganshenling, in the south of Hainan Island, were first formed after deforestation disturbance before a natural restoration of shrubs and secondary forests. However, the stages of grassland and shrubs in some parts of Ganshenling regions could not be naturally restored to secondary forests. In addition, the forest form of the secondary forest after 40 years (40a) of succession was similar to that of the secondary forest of 60 years (60a). However, it was not known whether the microorganisms recovered to the level of the secondary forest of 60a. Arbuscular mycorrhizal fungi (AMF) are plant root symbionts that can improve the nitrogen and phosphorus absorption of plants and play a key role in secondary forest succession. An understanding of the essential role of soil AMF in secondary forest succession of tropical rainforest in Ganshenling regions is still limited.

Methods

Therefore, the soil of 0–10 cm was collected with the help of a 5-point sampling method in grassland, shrubs, and second tropical lowland rainforest of 40a and 60a. We studied community changes in AMF with the succession and explored the impacts of soil physicochemical properties on soil AMF.

Results

Our findings were as follows: (1) Different successional stages showed divergent effects on soil AMF communities. (2) After 40a recovery, the alpha-diversity indices of AMF recovered to the level of secondary forest of 60a, but the similarity of soil AMF communities only recovered to 25.3%. (3) Species richness of common species, rare species, and all the species of AMF showed a significantly positive correlation with soil nitrogen. (4) OTU10; OTU6, OTU9, and OTU141; OTU3 and OTU38; and OTU2, OTU15, OTU23, and OTU197 were significantly unique AMF for grasslands, shrubs, and secondary forests of 40a and 60a, respectively. (5) The phylogenetic tree and the heatmap of AMF showed that the OTUs in grasslands and shrubs were in contrast to the OTUs in secondary forests of 40a and 60a.

Discussion

We concluded that the succession of a secondary forest after deforestation disturbance was probably limited by its AMF community.

Linking Rhizosphere Soil Aggregates with Belowground and Aboveground Plant Traits

Rhizosphere soil ecosystems are represented by the diversity of different soil aggregate-size classes, such as large macroaggregates, small macroaggregates, mesoaggregates, and microaggregates. Though these aggregate-size classes represent distinct biological, chemical, and physical properties, little is known about their dynamics and relationships with belowground and aboveground plant traits. In this study, we examined the relationships of various soil aggregate-size classes and their organic carbon contents with many aboveground and belowground soybean plant traits. Our study revealed several novel and interesting relationships between soil structural properties and plant traits. Notably, small macroaggregates represented a major portion of the rhizosphere soil ecosystem of soybean plants while organic carbon contents decreased with decreasing size of soil aggregates. Only microaggregates showed a significant relationship with root architectural traits, such as length and surface area. Among all soil aggregate size classes, the abundance of small macroaggregates and the organic carbon contents of microaggregates were better correlated with plant traits. In general, organic carbon contents of different soil aggregate-size classes showed positive correlations with leaf trichome density (defense traits) and major macronutrients, such as root P, K, and S contents; while there were mostly negative correlations with some micronutrient (Ca, Mn, Zn, Cu, B, and Mg) contents of roots and shoots. However, the abundance of small macroaggregates mostly positively correlated with the mineral contents of plant roots and shoots. Collectively, the positive and negative correlations of organic carbon contents of different soil aggregate-size classes with trichomes (defense) and physiological traits (micro-mineral contents) suggest their significance in plant nutrition and defense. Though our results suggest the relationships of soil aggregate properties with aboveground and belowground traits, further research is needed to discern the role of soil structural traits in mediating plant growth, development, defense, and physiology.

Effects of multiwalled carbon nanotube and Bacillus atrophaeus application on crop root zone thermal characteristics of saline farmland

Presently, the effects of crop roots on crop root zone thermal characteristics are poorly understood, and new fertilizers are rarely considered from the perspective of changing crop root zone thermal characteristics. This study explored the effect of applying two new fertilizers, multiwalled carbon nanotubes (MWCNTs) and Bacillus atrophaeus (B. atrophaeus), on the crop root zone thermal characteristics of saline farmland soils through in situ measurements. The results showed that MWCNTs and B. atrophaeus could indirectly affect crop root zone thermal characteristics by changing the crop root growth. Combined application of MWCNTs and B. atrophaeus could promote both to induce positive effects, promote crop root growth, and significantly alleviate the adverse effects of soil salinization. The thermal conductivity and heat capacity of the shallow root zone were reduced due to the presence of crop roots, while the opposite was true in the deep root zone. For example, the thermal conductivity of the 0-5 cm rich root zone in the MWCNT treatment was 0.8174 W m^-1 ·K^-1, and the thermal conductivity of the poor root zone was 13.42% higher than that of the rich root zone. MWCNTs and B. atrophaeus can also change the spatial distribution of soil moisture, soil salt, and soil particle size characteristics by influencing the root-soil interactions and indirectly affecting crop root zone thermal characteristics. In addition, MWCNTs and B. atrophaeus could directly affect the root zone thermal characteristics by changing the soil properties. The higher the soil salt content was, the more obvious the effect of the MWCNTs and B. atrophaeus on the crop root zone thermal characteristics. The thermal conductivity and heat capacity of the crop root zone were positively correlated with the soil moisture content, soil salt content and soil particle specific surface area and negatively correlated with the soil particle size and the fresh and dry root weights. In summary, MWCNTs and B. atrophaeus significantly affected crop root zone thermal characteristics directly and indirectly and could adjust the temperature of the crop root zone.

Unearthing soil-plant-microbiota crosstalk: Looking back to move forward

The soil is vital for life on Earth and its biodiversity. However, being a non-renewable and threatened resource, preserving soil quality is crucial to maintain a range of ecosystem services critical to ecological balances, food production and human health. In an agricultural context, soil quality is often perceived as the ability to support field production, and thus soil quality and fertility are strictly interconnected. The concept of, as well as the ways to assess, soil fertility has undergone big changes over the years. Crop performance has been historically used as an indicator for soil quality and fertility. Then, analysis of a range of physico-chemical parameters has been used to routinely assess soil quality. Today it is becoming evident that soil quality must be evaluated by combining parameters that refer both to the physico-chemical and the biological levels. However, it can be challenging to find adequate indexes for evaluating soil quality that are both predictive and easy to measure in situ. An ideal soil quality assessment method should be flexible, sensitive enough to detect changes in soil functions, management and climate, and should allow comparability among sites. In this review, we discuss the current status of soil quality indicators and existing databases of harmonized, open-access topsoil data. We also explore the connections between soil biotic and abiotic features and crop performance in an agricultural context. Finally, based on current knowledge and technical advancements, we argue that the use of plant health traits represents a powerful way to assess soil physico-chemical and biological properties. These plant health parameters can serve as proxies for different soil features that characterize soil quality both at the physico-chemical and at the microbiological level, including soil quality, fertility and composition of soil microbial communities.

Soil aggregation is more important than mulching and nitrogen application in regulating soil organic carbon and total nitrogen in a semiarid calcareous soil

Evaluating soil aggregation and microbial activities within soil aggregates contributes to understanding carbon (C) and nitrogen (N) cycling. Here we examined soil aggregate distribution, C and N pools, and extracellular enzymatic activities (EEAs) in soil aggregates after 16-year mulching (CT, no mulch; RF, plastic-mulched ridges and straw-mulched furrows; SM, straw mulch) and N fertilization (0, 120, and 240 kg ha-1). RF and SM significantly increased macroaggregate formation and aggregate stability (MWD, mean weight diameter) but N rate did not. Mulching had similar effects on aggregate-associated SOC (soil organic C) and TN (total N), with the order SM > RF > CT in macroaggregates and macroaggregate-occluded microaggregates. N input significantly increased TN in most cases, whereas its effect on SOC was only significant in SM. Notably, the majority of SOC and TN was isolated in the macroaggregate-occluded silt and clay fractions. SOC, TN, microbial biomass C (MBC), and microbial biomass N (MBN) decreased as aggregate-size decreased, whereas C- and N-acquiring enzymes varied greatly across aggregate fractions. Mulching had greater effects than N-fertilization on soil C and N pools and EEAs, whilst SM performed more beneficial effects than RF on SOC, TN, MBC, MBN, and EEAs. MBC rather than SOC was associated with MWD in bulk soil, while significant relations between MWD and SOC were observed in macroaggregates and macroaggregate-occluded microaggregates. Partial least squares path modeling illustrated that soil aggregation was the most important factor affecting SOC and TN, followed by mulching and N addition. Regression analysis further revealed that α-glucosidase and leucine aminopeptidase were major variables mediating SOC and TN dynamics at the aggregate scale. This study highlights the importance of macroaggregate-occluded microaggregate fraction sensitively evaluating soil C and N dynamics, and straw mulch can effectively increase soil aggregation and stabilization of C and N in semiarid areas with infertile soils.

Soil macroaggregation drives sequestration of organic carbon and nitrogen with three-year grass-clover leys in arable rotations

Conventional arable cropping with annual crops established by ploughing and harrowing degrades larger soil aggregates that contribute to storing soil organic carbon (SOC). The urgent need to increase SOC content of arable soils to improve their functioning and sequester atmospheric CO₂ has motivated studies into the effects of reintroducing leys into long-term conventional arable fields. However, effects of short-term leys on total SOC accumulation have been equivocal. As soil aggregation may be important for carbon storage, we investigated the effects of arable-to-ley conversion on cambisol soil after three years of ley, on concentrations and stocks of SOC, nitrogen and their distributions in different sized water-stable aggregates. These values were benchmarked against soil from beneath hedgerow margins. SOC stocks (0-7 cm depth) rose from 20.3 to 22.6 Mg ha^-1 in the arable-to-ley conversion, compared to 30 Mg ha^-1 in hedgerows, but this 2.3 Mg ha^-1 difference (or 0.77 Mg C ha^-1 yr^-1) was not significant). However, the proportion of large macroaggregates (> 2000 μm) increased 5.4-fold in the arable-to-ley conversion, recovering to similar abundance as hedgerow soils, driving near parallel increases in SOC and nitrogen within large macroaggregates (5.1 and 5.7-fold respectively). The total SOC (0-7 cm depth) stored in large macroaggregates increased from 2.0 to 9.6 Mg ha^-1 in the arable-to-ley conversion, which no longer differed significantly from the 12.1 Mg ha^-1 under hedgerows. The carbon therefore accumulated three times faster, at 2.53 Mg C ha^-1 yr^-1, in the large macroaggregates compared to the bulk soil. These findings highlight the value of monitoring large macroaggregate-bound SOC as a key early indicator of shifts in soil quality in response to change in field management, and the benefits of leys in soil aggregation, carbon accumulation, and soil functioning, providing justification for fiscal incentives that encourage wider use of leys in arable rotations.

Linking the chemical nature of soil organic carbon and biological binding agent in aggregates to soil aggregate stability following biochar amendment in a rice paddy

Changes in soil aggregation with biochar amendment have been investigated extensively, but how biochar affects the chemical composition of organic carbon (C) and biological binding agents in aggregates and their linkage with soil aggregate stability remains unclear. Soil samples were collected in a rice paddy treated with 0 (C0, control), 10 t ha^-1 (C10), 20 t ha^-1 (C20) and 40 t ha^-1 (C40) biochar for twenty months. The amount and chemical composition of soil organic C (SOC), microbial abundances and glomalin-related soil protein (GRSP) were determined in bulk soil and four fractions: large macroaggregates (>2000 μm), small macroaggregates (250-2000 μm), microaggregates (53-250 μm), and silt + clay (<53 μm). Our results showed that the proportion of >250 μm water-stable aggregates and mean weight diameter were gradually increased with increasing biochar addition rate. The concentrations of SOC, readily oxidizable C and microbial biomass C increased most in the small macroaggregates, followed by microaggregates under biochar amendment. Increasing biochar addition rate gradually decreased the relative contents of alkyl C, O-alkyl C and carbonyl C, but increased those of aromatic C across the aggregates, resulting in a higher aromaticity and hydrophobicity of SOC with respect to the control. The abundances of bacteria, fungi and archaea and the content of GRSP were significantly enhanced in the large and small macroaggregates under the C40 treatment. The proportion of >250 μm aggregates was significantly correlated with the contents of soil organic C fractions, GRSP and microbial abundance. Structural equation modeling further revealed that changes in SOC hydrophobicity and GRSP content under biochar amendment had significant and direct effects on the soil aggregate size distribution. In summary, our findings suggest that biochar amendment in rice paddy could improve soil aggregation through altering the chemical composition of soil organic C and the abundance of biological binding agents.

Temporal complementarity between roots and mycorrhizal fungi drives wheat nitrogen use efficiency

Improving nitrogen (N) use efficiency (NUE) to reduce the application of N fertilisers in a way that benefits the environment and reduces farmers' costs is an ongoing objective for sustainable wheat production. However, whether and how arbuscular mycorrhizal fungi (AMF) affect NUE in wheat is still not well explored. Three independent but complementary experiments were conducted to decipher the contribution of roots and AMF to the N uptake and utilisation efficiency in wheat. We show a temporal complementarity pattern between roots and AMF in shaping NUE of wheat. Pre-anthesis N uptake efficiency mainly depends on root functional traits, but the efficiency to utilise the N taken up during pre-anthesis for producing grains (E_N,g ) is strongly affected by AMF, which might increase the uptake of phosphorus and thereby improve photosynthetic carbon assimilation. Root association with AMF reduced the N remobilisation efficiency in varieties with high E_N,g ; whilst the overall grain N concentration increased, due to a large improvement in post-anthesis N uptake supported by AMF and/or other microbes. The findings provide evidence for the importance of managing AMF in agroecosystems, and an opportunity to tackle the contradiction between maximising grain yield and protein concentration in wheat breeding.

Pesticide soil microbial toxicity: setting the scene for a new pesticide risk assessment for soil microorganisms (IUPAC Technical Report)

Pesticides constitute an integral part of modern agriculture. However, there are still concerns about their effects on non-target organisms. To address this the European Commission has imposed a stringent regulatory scheme for new pesticide compounds. Assessment of the aquatic toxicity of pesticides is based on a range of advanced tests. This does not apply to terrestrial ecosystems, where the toxicity of pesticides on soil microorganisms, is based on an outdated and crude test (N mineralization). This regulatory gap is reinforced by the recent methodological and standardization advances in soil microbial ecology. The inclusion of such standardized tools in a revised risk assessment scheme will enable the accurate estimation of the toxicity of pesticides on soil microorganisms and on associated ecosystem services. In this review we (i) summarize recent work in the assessment of the soil microbial toxicity of pesticides and point to ammonia-oxidizing microorganisms (AOM) and arbuscular mycorrhizal fungi (AMF) as most relevant bioindicator groups (ii) identify limitations in the experimental approaches used and propose mitigation solutions, (iii) identify scientific gaps and (iv) propose a new risk assessment procedure to assess the effects of pesticides on soil microorganisms.

Rapid improvement in soil health following the conversion of abandoned farm fields to annual or perennial agroecosystems

Incorporating perennial crops into agroecosystems has been shown to mitigate soil degradation and improve soil health by enhancing soil aggregation and soil organic carbon (SOC) accrual. However, our understanding of the ability and timeframe for perennial crop systems to build soil health within the context of conversion from abandoned crop land remains limited. Here, we examined changes in soil health in the first year following the conversion of an abandoned crop field into an agroecosystem planted with various treatments, including: novel perennial grain (intermediate wheatgrass, IWG; Thinopyrum intermedium), IWG/ alfalfa biculture, forage grass, tallgrass prairie, or annual wheat. We analyzed factors considered central to the concept of mitigating soil degradation to improve soil health (soil aggregation, aggregate organic carbon (OC), bulk SOC) and their soil biological and physicochemical correlates throughout the first growing season. Comparisons between treatments showed that both annual and perennial treatments rapidly and significantly improved soil health metrics including aggregation, aggregate stability, and OC levels compared to pre-conversion conditions. Such increases were positively correlated with the abundance of arbuscular mycorrhizal fungi (AMF hyphae, root colonization), labile SOC and microbial activity. Notably, IWG/ alfalfa biculture resulted in significantly higher levels of macroaggregate OC in comparison to other treatments, including tallgrass prairie, supporting the potential of perennial grasses to contribute to soil carbon gains. Overall, the conversion of this abandoned land to an agroecosystem produced rapid and substantial increases in soil health in the first year after planting.

Sequestration of heavy metals in soil aggregates induced by glomalin-related soil protein: A five-year phytoremediation field study

Glomalin-related soil protein (GRSP) is an essential bioactive component that may respond to heavy metal stress; however, its exact influence on metal bioavailability and the associated mechanism remains poorly understood. This study investigated the speciation and distribution of heavy metals in soil aggregates associated with GRSP through macroscopic and microscopic approaches. A field study showed that the metal ions were distributed to the macro-aggregate fraction by partitioning the particle size classes during phytoremediation. Partial least squares path modeling (PLS-PM) demonstrated that the heavy metal bioavailability was negatively affected by aggregate stability (61.5%) and GRSP content (52.8%), suggesting that the soil aggregate properties regarding GRSP were vital drivers in mitigating environmental risk closely associated with toxic metal migration in soil-plant systems. The nonideal competitive adsorption (NICA)-Donnan model fitting suggested that GRSP were rich in acid site density, and the complexation with deprotonated groups dominated the speciation of heavy metals in soil. Further, the microfocus X-ray absorption/fluorescence spectroscopy analysis indicated that GRSP might promote the formation of stable metal species by binding with sulfur-containing sites. This study highlights the role of GRSP in heavy metal sequestration in contaminated soils, providing new guidance on the GRSP intervention for phytoremediation strategies.

What are mycorrhizal traits?

Traits are inherent properties of organisms, but how are they defined for organismal networks such as mycorrhizal symbioses? Mycorrhizal symbioses are complex and diverse belowground symbioses between plants and fungi that have proved challenging to fit into a unified and coherent trait framework. We propose an inclusive mycorrhizal trait framework that classifies traits as morphological, physiological, and phenological features that have functional implications for the symbiosis. We further classify mycorrhizal traits by location - plant, fungus, or the symbiosis - which highlights new questions in trait-based mycorrhizal ecology designed to charge and challenge the scientific community. This new framework is an opportunity for researchers to interrogate their data to identify novel insights and gaps in our understanding of mycorrhizal symbioses.

Arbuscular Mycorrhizal Fungi Mediated Enhanced Biomass, Root Morphological Traits and Nutrient Uptake under Drought Stress: A Meta-Analysis

Drought stress remains the major constraint in affecting crop productivity in several arid and semi-arid areas highlighting climate change perspectives. Arbuscular mycorrhizal fungi (AMF) belong to a versatile class of plant−fungal symbiotic associations establishing drought stress alleviation. Nevertheless, the mechanistic mode of sustainable agriculture necessitates rigorous assessment for authentic and reproducible plant growth parameters. Understanding the plant growth promotion, root morphological changes, and nutrient uptake response in AMF-inoculated plants to drought is very important for sustainable agriculture. Therefore, conducted a meta-analysis of published research articles for determining the efficacy of AMF in alleviating drought stress. Overall analysis showed that AM inoculated plants had 49% higher plant growth promotion than the non-mycorrhizal plants under drought stress. Biomass analysis depicted the root dry weight increase by 49%, shoot dry weight increase by 54%, and total dry weight increase by 58% indicating plant biomass traits augmentation. Root morphological traits analysis corresponded to increased root length (37%), root surface (31%), and root volume (65%). Notably, nutrient uptake assessment showed variable increases in uptake patterns such as P uptake by 86%, N uptake by 35%, and K uptake by 46%. Furthermore, the prominent efficacy of AMF was significantly larger under drought for P uptake (p < 0.001) and root volume (p < 0.001) indicating the linear relationship between root length and P uptake. Thus, the present meta-analysis confirms that drought stress alleviation emancipated by AMF is mediated by root traits modification and phosphorous acquisition efficacy. Hence, meta-analyses along with experimental validations with field trial evaluations will certainly provide the AMF research for escalated applications for better plant productivity, stress alleviation, and sustainable agriculture.

Soil Aggregation Shaped the Distribution and Interaction of Bacterial-Fungal Community Based on a 38-Year Fertilization Experiment in China

Soil aggregates provide different ecological niches for microorganisms, and in turn, the microbial interactions affect soil aggregation process. The response of the microbial community in bulk soil to different fertilization regimes has been well studied; however, the co-occurrence patterns of bacteria and fungi in different aggregates under various fertilization regimes remain unclear. Based on the long-term field experiment, we found that fertilization regimes contributed more to fungal than to bacterial community composition. Long-term fertilization decreased microbial interactions in large macroaggregates (LM), macroaggregates (MA) and silt and clay (SC) fractions, but increased in microaggregates (MI). The application of manure with inorganic fertilizers (NPKM) significantly increased the intensive cooperation between bacteria and fungi in LM and MA. Microbial communities in LM and MA were well separated and showed strong competition against microbes in MI and SC; hence, we concluded that the microbial habitat could be divided into two groups, large fractions (LM and MA) and small fractions (MI and SC). The bacterial genera Anaerolinea, Nocardioides, Ohtaekwangia, Geoalkalibacter, Lysobacter, Pedomicrobium, and Flavisolibacter were keystone taxa in inorganic fertilization, and Roseiflexus, Nitrospira, and Blastocatella were keystone taxa in NPKM, which were all sensitive to soil aggregation. In this study, we demonstrated that the NPKM decreased the microbial interactions within and between kingdoms in LM, MA, and SC, but enhanced nutrient availability and microbial interactions in MI, leading to the formation of biofilms and the strengthening of stress tolerance, which finally stimulated the formation and stabilization of soil aggregates. Thus, this study revealed how soil microbial competition or cooperation responded to different fertilization regimes at aggregate scales, and provided evidence for the stimulation of soil stability.

Cooperation between arbuscular mycorrhizal fungi and plant growth-promoting bacteria and their effects on plant growth and soil quality

The roles of arbuscular mycorrhizal fungi (AMF) and plant growth-promoting rhizobacteria (PGPR) in improving nutrition uptake and soil quality have been well documented. However, few studies have explored their effects on root morphology and soil properties. In this study, we inoculated Elymus nutans Griseb with AMF and/or PGPR in order to explore their effects on plant growth, soil physicochemical properties, and soil enzyme activities. The results showed that AMF and/or PGPR inoculation significantly enhanced aboveground and belowground vegetation biomass. Both single and dual inoculations were beneficial for plant root length, surface area, root branches, stem diameter, height, and the ratio of shoot to root, but decreased root volume and root average diameter. Soil total nitrogen, alkaline phosphatase, and urease activities showed significant growth, and soil electrical conductivity and pH significantly declined under the inoculation treatments. Specific root length showed a negative correlation with belowground biomass, but a positive correlation with root length and root branches. These results indicated that AMF and PGPR had synergetic effects on root morphology, soil nutrient availability, and plant growth.

Spatial variability and environmental drivers of cassava-arbuscular mycorrhiza fungi (AMF) associations across Southern Nigeria

Cassava, forming starch-rich, tuberous roots, is an important staple crop in smallholder farming systems in sub-Saharan Africa. Its relatively good tolerance to drought and nutrient-poor soils may be partly attributed to the crop's association with arbuscular mycorrhiza fungi (AMF). Yet insights into AMF-community composition and richness of cassava, and knowledge of its environmental drivers are still limited. Here, we sampled 60 cassava fields across three major cassava-growing agro-ecological zones in Nigeria and used a DNA meta-barcoding approach to quantify large-scale spatial variation and evaluate the effects of soil characteristics and common agricultural practices on AMF community composition, richness and Shannon diversity. We identified 515 AMF operational taxonomic units (OTUs), dominated by Glomus, with large variation across agro-ecological zones, and with soil pH explaining most of the variation in AMF community composition. High levels of soil available phosphorus reduced OTU richness without affecting Shannon diversity. Long fallow periods (> 5 years) reduced AMF richness compared with short fallows, whereas both zero tillage and tractor tillage reduced AMF diversity compared with hoe tillage. This study reveals that the symbiotic relationship between cassava and AMF is strongly influenced by soil characteristics and agricultural management and that it is possible to adjust cassava cultivation practices to modify AMF diversity and community structure.

The formation of large macroaggregates induces soil organic carbon sequestration in short-term cropland restoration in a typical karst area

Cropland restoration induces litter and root inputs and promotes the development of biological soil crusts (BSCs), which may promote aggregate formation and soil organic carbon (SOC) sequestration. However, litter, roots and BSCs have not been simultaneously considered when assessing soil aggregate and aggregate-associated SOC fraction responses to cropland restoration in subtropical areas. Here, we measured particulate organic carbon (POC) and mineral-associated organic carbon (MOC) in bulk soils and soil aggregates after 15 years of cropland restoration. Soil samples of cropland (CL) and four cropland restoration types (plantation forest [PF], forage grassland [FG], mixed plantation of forest and forage grassland [FF], and abandoned natural grassland [NG]) from depths of 0-30 cm were collected. Cropland restoration significantly increased SOC and POC in bulk soil at the 0-5 cm depth. However, only in FG did SOC significantly increase at depths of 5-15 cm, and POC significantly increased at depths of 5-30 cm. The large macroaggregate (5-10 mm and 2-5 mm) proportions increased significantly at the 0-15 cm depth after cropland restoration, and FG, FF and NG also increased the 5-10 mm aggregate proportions at the 15-30 cm depth. The SOC sequestration in bulk soil with cropland restoration was attributed to increases in the aggregate-associated organic carbon (AAOC) pool in large macroaggregates, which was mainly attributed to the increased aggregate amount rather than the increased AAOC concentration in large macroaggregates. Our results also indicated that an increase in aggregate-associated particulate organic carbon (AAPOC) led to an increase in AAOC. Variation partitioning indicated that the formation of large macroaggregates was controlled by the litter-moss-root interactive effect in this karst area. FG could be a better short-term cropland restoration strategy, increasing large macroaggregates in deeper soil layers better than the other vegetation types and promoting soil carbon sequestration in deeper soil layers.

Changes in soil aggregate stability and aggregate-associated organic carbon during old-field succession in karst valley

Soil is the largest carbon pool whose change will have an impact on the terrestrial carbon cycle in the terrestrial ecosystem. Old-field succession on abandoned farmland, which usually has a noticeable effect on soil status, is a common phenomenon in karst valley where human activity alters frequently. In order to understand the changes in the accumulation of organic carbon (OC) in aggregates and bulk soil in different stages of old-field succession on abandoned farmland in the karst valley area, soil samples were collected at 0-10-cm and 10-20-cm depth representing three typical stages of old-field succession, i.e., abandoned farmland, secondary grass, and secondary shrub in Qingmuguan karst valley area, Chongqing City, Southwest China. Results displayed that during old-field succession (1) the mean weight diameter and geometric mean diameter of the aggregates increased and the fractal dimension decreased; (2) OC content within aggregates and bulk soil had no significant change in topsoil (0-10 cm); OC content within microaggregates and bulk soil had a significant reduction in subsoil (10-20 cm); the OC content within silt and clay fractions was significantly higher than that within the other two kinds of aggregates; (3) bulk-soil OC storage had no significant change but its accumulation relied more on the increase in the number of larger aggregates. It is concluded that the old-field succession in karst valley was beneficial to protect against soil erosion by improving soil aggregate stability, but had a limited effect on soil organic carbon sequestration.

A starting guide to root ecology: strengthening ecological concepts and standardising root classification, sampling, processing and trait measurements

In the context of a recent massive increase in research on plant root functions and their impact on the environment, root ecologists currently face many important challenges to keep on generating cutting-edge, meaningful and integrated knowledge. Consideration of the below-ground components in plant and ecosystem studies has been consistently called for in recent decades, but methodology is disparate and sometimes inappropriate. This handbook, based on the collective effort of a large team of experts, will improve trait comparisons across studies and integration of information across databases by providing standardised methods and controlled vocabularies. It is meant to be used not only as starting point by students and scientists who desire working on below-ground ecosystems, but also by experts for consolidating and broadening their views on multiple aspects of root ecology. Beyond the classical compilation of measurement protocols, we have synthesised recommendations from the literature to provide key background knowledge useful for: (1) defining below-ground plant entities and giving keys for their meaningful dissection, classification and naming beyond the classical fine-root vs coarse-root approach; (2) considering the specificity of root research to produce sound laboratory and field data; (3) describing typical, but overlooked steps for studying roots (e.g. root handling, cleaning and storage); and (4) gathering metadata necessary for the interpretation of results and their reuse. Most importantly, all root traits have been introduced with some degree of ecological context that will be a foundation for understanding their ecological meaning, their typical use and uncertainties, and some methodological and conceptual perspectives for future research. Considering all of this, we urge readers not to solely extract protocol recommendations for trait measurements from this work, but to take a moment to read and reflect on the extensive information contained in this broader guide to root ecology, including sections I-VII and the many introductions to each section and root trait description. Finally, it is critical to understand that a major aim of this guide is to help break down barriers between the many subdisciplines of root ecology and ecophysiology, broaden researchers' views on the multiple aspects of root study and create favourable conditions for the inception of comprehensive experiments on the role of roots in plant and ecosystem functioning.

Sand Particle Size and Phosphorus Amount Affect Rhizophagus irregularis Spore Production Using In Vitro Propagated Spore as a Starter Inoculum in Rhizosphere of Maize (Zea mays) Plantlets

Microbial inoculants, particularly arbuscular mycorrhizal (AM) fungi, have great potential for sustainable crop management. In this study, monoxenic culture of indigenous R. irregularis was developed and used as a tool to determine the minimum phosphorus (P) level for maximum spore production under the in vitro conditions. This type of starter AM fungal inoculum was then applied to an in vivo substrate-based mass-cultivation system. Spore production, colonization rate, and plant growth were examined in maize (Zea mays L.) plant inoculated with the monoxenic culture of R. irregularis in sand graded by particle size with varying P levels in nutrient treatments. In the in vitro culture, the growth medium supplemented with 20 µM P generated the maximum number of spores (400 spores/mL media) of R. irregularis. In the in vivo system, the highest sporulation (≈500 spores g⁻¹ sand) occurred when we added a half-strength Hoagland solution (20 µM P) in the sand with particle size between 500 µm and 710 µm and omitted P after seven weeks. However, the highest colonization occurred when we added a half-strength Hoagland solution in the sand with particle sizes between 710 µm and 1000 µm and omitted P after seven weeks. This study suggests that substrate particle size and P reduction and regulation might have a strong influence on the maximization of sporulation and colonization of R. irregularis in sand substrate-based culture.

Retention of Matured Trees to Conserve Fungal Diversity and Edible Sporocarps from Short-Rotation Pinus radiata Plantations in Ethiopia

This study is conducted in the short-rotation plantations from the Afromontane Region of Ethiopia. Sporocarps were sampled weekly in a set of permanent plots (100 m²) in young, medium-aged, and mature Pinus radiata (Don) plantations. Fungal richness, diversity, and sporocarp yields were estimated. Composite soil samples were also collected from each plot to determine explanatory edaphic variables for taxa composition. We collected 92 fungal taxa, of which 8% were ectomycorrhizal (ECM). Taxa richness, the Shannon diversity index, and ECM species richness were higher in mature stands. Interestingly, 26% of taxa were classified as edible. Sporocarp yield showed increasing trends towards matured stands. OM and C/N ratio significantly affected fungal composition and sporocarp production. The deliberate retention of mature trees in a patch form rather than clear felling of the plantations could be useful to conserve and promote fungal diversity and production, including valuable taxa such as Morchella, Suillus, and Tylopilus in older stands. This approach has important implications for forest floor microhabitats, which are important for macrofungal occurrence and production. Thus, this strategy could improve the economic outputs of these plantations in the Afromontane Region, while the mature trees could serve as a bridge for providing fungal inocula to the new plantations.

Effect of straw decomposition on organic carbon fractions and aggregate stability in salt marshes

Straw addition can increase the content of soil organic carbon (SOC), and affect the content of aggregates and organic carbon fractions. The changes in aggregates and organic carbon fractions in the natural salt marsh, 10-year and 15-year freshwater pumping areas in the Yellow River Estuary were studied by 120-day field in situ culture experiments with Phragmites australis straw addition. The results showed that straw addition mainly enhanced the soil aggregate stability in the 10-year freshwater pumping area, and the organic carbon content of small macro-aggregates increased significantly by 26.36% (P < 0.05). In particular, the content of coarse particulate organic carbon (cPOC) with small macro-aggregates in all areas increased significantly with the addition of straw (P < 0.05). For small macro-aggregates in the 10-year pumping area, the cPOC contents increased significantly by 21.73 g/kg (P < 0.05); and were significantly higher than the fine particulate organic carbon (fPOC) and mineral-associated organic carbon (mSOC) contents, as the fPOC contents in micro-aggregates increased by 85.92% (P < 0.05). Additionally, the cPOC contents of small macro-aggregates and fPOC contents of micro-aggregates increased by 34.59% and 43.24% in the 15-year pumping area. The contents of mSOC were the lowest in different aggregates across all areas. Thus, straw addition had a significant effect on the contents of cPOC and fPOC, while freshwater pumping in the YRE could affect the distribution of fPOC and mSOC with aggregates.

Organic fertilization improves soil aggregation through increases in abundance of eubacteria and products of arbuscular mycorrhizal fungi

An important goal of sustainable agriculture is to maintain soil quality. Soil aggregation, which can serve as a measure of soil quality, plays an important role in maintaining soil structure, fertility, and stability. The process of soil aggregation can be affected through impacts on biotic and abiotic factors. Here, we tested whether soil management involving application of organic and mineral fertilizers could significantly improve soil aggregation and if variation among differently fertilized soils could be specifically attributed to a particular biotic and/or abiotic soil parameter. In a field experiment within Central Europe, we assessed stability of 1-2 mm soil aggregates together with other parameters of soil samples from differently fertilized soils. Application of compost and digestates increased stability of soil aggregates. Most of the variation in soil aggregation caused by different fertilizers was associated with soil organic carbon lability, occurrence of aromatic functional groups, and variations in abundance of eubacteria, total glomalins, concentrations of total S, N, C, and hot water extractable C. In summary, we have shown that application of compost and digestates improves stability of soil aggregates and that this is accompanied by increased soil fertility, decomposition resistance, and abundance of total glomalins and eubacteria. These probably play significant roles in increasing stability of soil aggregates.

Soil fungal community composition and functional similarity shift across distinct climatic conditions

A large part of ecosystem function in woodland systems depends on soil fungal communities. However, global climate change has the potential to fundamentally alter these communities as fungal species are filtered with changing environmental conditions. In this study, we examined the potential effects of climate on host-associated (i.e. tree-associated) soil fungal communities at climatically distinct sites in the Tehachapi Mountains in California, where more arid conditions represent likely regional climate futures. We found that soil fungal community composition changes strongly across sites, with species richness and diversity being highest at the most arid site. However, host association may buffer the effects of climate on community composition, as host-associated fungal communities are more similar to each other across climatically distinct sites than the whole fungal community. Lastly, an examination of functional traits for ectomycorrhizal fungi, a well-studied guild of fungal mutualist species, showed that stress-tolerant traits were more abundant at arid sites than mesic sites, providing a mechanistic understanding of these community patterns. Taken together, our results indicate that fungal community composition will likely shift with future climate change but that host association may buffer these effects, with shifts in functional traits having implications for future ecosystem function.

Potential Effects of Microplastic on Arbuscular Mycorrhizal Fungi

Microplastics (MPs) are ubiquitously found in terrestrial ecosystems and are increasingly recognized as a factor of global change (GCF). Current research shows that MP can alter plant growth, soil inherent properties, and the composition and activity of microbial communities. However, knowledge about how microplastic affects arbuscular mycorrhizal fungi (AMF) is scarce. For plants it has been shown that microplastic can both increase and decrease the aboveground biomass and reduce the root diameter, which could indirectly cause a change in AMF abundance and activity. One of the main direct effects of microplastic is the reduction of the soil bulk density, which translates to an altered soil pore structure and water transport. Moreover, especially fibers can have considerable impacts on soil structure, namely the size distribution and stability of soil aggregates. Therefore, microplastic alters a number of soil parameters that determine habitat space and conditions for AMF. We expect that this will influence functions mediated by AMF, such as soil aggregation, water and nutrient transport. We discuss how the impacts of microplastic on AMF could alter how plants deal with other GCFs in the context of sustainable food production. The co-occurrence of several GCFs, e.g., elevated temperature, drought, pesticides, and microplastic could modify the impact of microplastic on AMF. Furthermore, the ubiquitous presence of microplastic also relates to earth system processes, e.g., net primary production (NPP), carbon and nitrogen cycling, which involve AMF as key soil organisms. For future research, we outline which experiments should be prioritized.