Contrasting biodiversity-ecosystem functioning relationships in phylogenetic and functional diversity

Multitrophic and Multidimensional Insights into Biodiversity and Functional Trait Responses to Precipitation Changes in Alpine Grasslands

Biodiversity and functional traits are increasingly recognized as pivotal factors in regulating ecosystem functioning and stability. However, the patterns and processes of multidimensional biodiversity and functional traits along environmental gradients remain insufficiently understood. In this study, we examined taxonomic, phylogenetic, and functional diversity across multiple trophic levels in 38 alpine grassland sites along a precipitation gradient on the Qinghai-Tibet Plateau. Our findings reveal asynchronous responses of taxonomic, phylogenetic, and functional diversity metrics, as well as functional traits across trophic levels, to variations in precipitation. Soil microbial diversity and functional traits exhibited stronger responses to precipitation changes compared to plant communities, with a tighter coupling observed between microbial diversity and microbial functional traits. Climate and soil properties jointly regulated diversity and functional trait metrics, with the climate exerting greater influence on functional traits and soil properties playing a dominant role in shaping diversity patterns. This study highlights the distinct responses of biodiversity and functional trait attributes to environmental shifts, emphasizing the importance of integrating multidimensional and multitrophic perspectives to advance our understanding of community assembly processes.

Diversity, functionality, and stability: shaping ecosystem multifunctionality in the successional sequences of alpine meadows and alpine steppes on the Qinghai-Tibet Plateau

Recent investigations on the Tibetan Plateau have harnessed advancements in digital ground vegetation surveys, high temporal resolution remote sensing data, and sophisticated cloud computing technologies to delineate successional dynamics between alpine meadows and alpine steppes. However, these efforts have not thoroughly explored how different successional stages affect key ecological parameters, such as species and functional diversity, stability, and ecosystem multifunctionality, which are fundamental to ecosystem resilience and adaptability. Given this gap, we systematically investigate variations in vegetation diversity, functional diversity, and the often-overlooked dimension of community stability across the successional gradient from alpine meadows to alpine steppes. We further identify the primary environmental drivers of these changes and evaluate their collective impact on ecosystem multifunctionality. Our analysis reveals that, as vegetation communities progress from alpine meadows toward alpine steppes, multi-year average precipitation and temperature decline significantly, accompanied by reductions in soil nutrients. These environmental shifts led to decreased species diversity, driven by lower precipitation and reduced soil nitrate-nitrogen levels, as well as community differentiation influenced by declining soil pH and precipitation. Consequently, as species loss and community differentiation intensified, these changes diminished functional diversity and eroded community resilience and resistance, ultimately reducing grassland ecosystem multifunctionality. Using linear mixed-effects model and structural equation modeling, we found that functional diversity is the foremost determinant of ecosystem multifunctionality, followed by species diversity. Surprisingly, community stability also significantly influences ecosystem multifunctionality-a factor rarely highlighted in previous studies. These findings deepen our understanding of the interplay among diversity, functionality, stability, and ecosystem multifunctionality, and support the development of an integrated feedback model linking environmental drivers with ecological attributes in alpine grassland ecosystems.

Describing functional diversity of communities from environmental DNA

Comprehensive assessments of functional diversity are needed to understand ecosystem alterations under global changes. The 'Fun-eDNA' approach characterises functional diversity by assigning traits to taxonomic units obtained through environmental DNA (eDNA) sampling. By simultaneously analysing an unprecedented number of taxa over broad spatial scales, the approach provides a whole-ecosystem perspective of functional diversity. Fun-eDNA is increasingly used to tackle multiple questions, but aligning eDNA with traits poses several conceptual and technical challenges. Enhancing trait databases, improving the annotation of eDNA-based taxonomic inventories, interdisciplinary collaboration, and conceptual harmonisation of traits are key steps to achieve a comprehensive assessment of diverse taxa. Overcoming these challenges can unlock the full potential of eDNA in leveraging measures of ecosystem functions from multi-taxa assessments.

Seasonal effects of long-term warming on ecosystem function and bacterial diversity

Across biomes, soil biodiversity promotes ecosystem functions. However, whether this relationship will be maintained within ecosystems under climate change is uncertain. Here, using two long-term soil warming experiments, we investigated how warming affects the relationship between ecosystem functions and bacterial diversity across seasons, soil horizons, and warming duration. Soils were sampled from these warming experiments located at the Harvard Forest Long-Term Ecological Research (LTER) site, where soils had been heated +5°C above ambient for 13 or 28 years at the time of sampling. We assessed seven measurements representative of different ecosystem functions and nutrient pools. We also surveyed bacterial community diversity. We found that ecosystem function was significantly affected by season, with autumn samples having a higher intercept than summer samples in our model, suggesting a higher overall baseline of ecosystem function in the fall. The effect of warming on bacterial diversity was similarly affected by season, where warming in the summer was associated with decreased bacterial evenness in the organic horizon. Despite the decreased bacterial evenness in the warmed plots, we found that the relationship between ecosystem function and bacterial diversity was unaffected by warming or warming duration. Our findings highlight that season is a consistent driver of ecosystem function as well as a modulator of climate change effects on bacterial community evenness.

Phylogeny structures species' interactions in experimental ecological communities

Species' traits and interactions are products of evolutionary history. Despite the long-standing hypothesis that closely related species possess similar traits, and thus experience stronger competition, measuring the effect of evolutionary history on the ecology of natural communities remains challenging. We propose a novel framework to test whether phylogeny influences patterns of coexistence and abundance of species assemblages. In our approach, phylogenetic trees are used to parameterize species' interactions, which in turn determine the abundance of species in a given assemblage. We use likelihoods to score models parameterized with a given phylogeny, and contrast them with models built using random trees, allowing us to test whether phylogenetic information helps to predict species' abundances. Our statistical framework reveals that interactions are indeed structured by phylogeny in a large set of experimental plant communities. Our results confirm that evolutionary history can help predict, and potentially manage or conserve, the structure and function of complex ecological communities.

Biodiversity and productivity in eastern US forests

Despite experimental and observational studies demonstrating that biodiversity enhances primary productivity, the best metric for predicting productivity at broad geographic extents-functional trait diversity, phylogenetic diversity, or species richness-remains unknown. Using >1.8 million tree measurements from across eastern US forests, we quantified relationships among functional trait diversity, phylogenetic diversity, species richness, and productivity. Surprisingly, functional trait and phylogenetic diversity explained little variation in productivity that could not be explained by tree species richness. This result was consistent across the entire eastern United States, within ecoprovinces, and within data subsets that controlled for biomass or stand age. Metrics of functional trait and phylogenetic diversity that were independent of species richness were negatively correlated with productivity. This last result suggests that processes that determine species sorting and packing are likely important for the relationships between productivity and biodiversity. This result also demonstrates the potential confusion that can arise when interdependencies among different diversity metrics are ignored. Our findings show the value of species richness as a predictive tool and highlight gaps in knowledge about linkages between functional diversity and ecosystem functioning.

Mixed plantations do not necessarily provide higher ecosystem multifunctionality than monoculture plantations

Forest stand transformation is a crucial strategy for enhancing the productivity and stability of planted forest ecosystems and maximizing their ecosystem functions. However, understanding forest ecosystem multifunctionality responses to various stand transformation methods remains limited. In this study, we assessed ecosystem multifunctionality, encompassing nutrient cycling, carbon stocks, water regulation, decomposition, wood production, and symbiosis, under different stand transformation methods (Chinese fir monoculture, mixed conifer and broad-leaf, broad-leaf mixed, and secondary forests). We also identified key factors contributing to variations in ecosystem multifunctionality. The results showed that Chinese fir plantations were more conducive to carbon stock creation, while broad-leaved mixed plantations excelled in water regulation. Secondary forests exhibited higher ecosystem multifunctionality than other plantation types, with Chinese fir plantations displaying the highest multifunctionality, significantly surpassing mixed coniferous and broad-leaved plantations. Our findings further revealed that soil nutrients and plant diversity have significant impacts on ecosystem multifunctionality. In summary, stand transformation profoundly influences ecosystem multifunctionality, and mixed plantations do not necessarily provide higher ecosystem multifunctionality than monoculture plantations.

Phylogenetic diversity drives soil multifunctionality in arid montane forest-grassland transition zone

Exploring plant diversity and ecosystem functioning in different dimensions is crucial to preserve ecological balance and advance ecosystem conservation efforts. Ecosystem transition zones serve as vital connectors linking two distinct ecosystems, yet the impact of various aspects of plant diversity (including taxonomic, functional, and phylogenetic diversity) on soil multifunctionality in these zones remains to be clarified. This study focuses on the forest-grassland transition zone in the mountains on the northern slopes of the Tianshan Mountains, and investigates vegetation and soil characteristics from forest ecosystems to grassland ecosystems to characterize plant diversity and soil functioning, as well as the driving role of plant diversity in different dimensions. In the montane forest-grassland transition zone, urease (URE) and total nitrogen (TN) play a major role in regulating plant diversity by affecting the soil nutrient cycle. Phylogenetic diversity was found to be the strongest driver of soil multifunctionality, followed by functional diversity, while taxonomic diversity was the least important driver. Diverse species were shown to play an important role in maintaining soil multifunctionality in the transition zone, especially distantly related species with high phylogeny. The study of multidimensional plant diversity and soil multifunctionality in the montane forest-grassland transition zone can help to balance the relationship between these two elements, which is crucial in areas where the ecosystem overlaps, and the application of the findings can support sustainable development in these regions.

Understanding the relative roles of local environmental, geo-climatic and spatial factors for taxonomic, functional and phylogenetic β-diversity of stream fishes in a large basin, Northeast China

The primary objective of this study was to determine the relative roles of local environmental (Local), geo-climatic (Geo), and spatial (Spatial) factors to taxonomic, functional, and phylogenetic β-diversity of stream fish in a large basin in Northeast China. We quantified the current biodiversity patterns of fish communities in the Hun-Tai River using β-diversity. We assessed (i) corresponding contributions of turnover and nestedness within the taxonomic, functional, and phylogenetic β-diversity of fishes; (ii) correlations among β-diversity facets (i.e., taxonomic, functional, and phylogenetic facets); (iii) relative contributions of Local, Geo, and Spatial factors to β-diversity. We collected fish communities from 171 sampling sites. Mantel tests were used to examine the correlation of three facets of β-diversity and their components (i.e., total, nestedness, and turnover). Distance-based redundancy analysis and variation partitioning assess the relative contributions of Local, Geo, and Spatial factors to β-diversity. We found that turnover is the main driving mechanism for β-diversity in fish. Among the facets of β-diversity, taxonomic and phylogenetic facets have strong ecological information association. Spatial factors have a general contribution to various facets of β-diversity and its components. From aspects of fish β-diversity conservation, connectivity and habitat heterogeneity need to be maintained in the entire aquatic environment. In addition, protecting taxonomic β-diversity is helpful for maintaining phylogenetic β-diversity.

Biodiversity promotes ecosystem functioning despite environmental change

Three decades of research have demonstrated that biodiversity can promote the functioning of ecosystems. Yet, it is unclear whether the positive effects of biodiversity on ecosystem functioning will persist under various types of global environmental change drivers. We conducted a meta‐analysis of 46 factorial experiments manipulating both species richness and the environment to test how global change drivers (i.e. warming, drought, nutrient addition or CO₂ enrichment) modulated the effect of biodiversity on multiple ecosystem functions across three taxonomic groups (microbes, phytoplankton and plants). We found that biodiversity increased ecosystem functioning in both ambient and manipulated environments, but often not to the same degree. In particular, biodiversity effects on ecosystem functioning were larger in stressful environments induced by global change drivers, indicating that high‐diversity communities were more resistant to environmental change. Using a subset of studies, we also found that the positive effects of biodiversity were mainly driven by interspecific complementarity and that these effects increased over time in both ambient and manipulated environments. Our findings support biodiversity conservation as a key strategy for sustainable ecosystem management in the face of global environmental change.

Relationships between biodiversity and ecosystem functioning proxies strengthen when approaching chemosynthetic deep-sea methane seeps

As biodiversity loss accelerates globally, understanding environmental influence over biodiversity-ecosystem functioning (BEF) relationships becomes crucial for ecosystem management. Theory suggests that resource supply affects the shape of BEF relationships, but this awaits detailed investigation in marine ecosystems. Here, we use deep-sea chemosynthetic methane seeps and surrounding sediments as natural laboratories in which to contrast relationships between BEF proxies along with a gradient of trophic resource availability (higher resource methane seep, to lower resource photosynthetically fuelled deep-sea habitats). We determined sediment fauna taxonomic and functional trait biodiversity, and quantified bioturbation potential (BPc), calcification degree, standing stock and density as ecosystem functioning proxies. Relationships were strongly unimodal in chemosynthetic seep habitats, but were undetectable in transitional 'chemotone' habitats and photosynthetically dependent deep-sea habitats. In seep habitats, ecosystem functioning proxies peaked below maximum biodiversity, perhaps suggesting that a small number of specialized species are important in shaping this relationship. This suggests that absolute biodiversity is not a good metric of ecosystem 'value' at methane seeps, and that these deep-sea environments may require special management to maintain ecosystem functioning under human disturbance. We promote further investigation of BEF relationships in non-traditional resource environments and emphasize that deep-sea conservation should consider 'functioning hotspots' alongside biodiversity hotspots.

Soil abiotic properties and plant functional diversity co-regulate the impacts of nitrogen addition on ecosystem multifunctionality in an alpine meadow

Soil abiotic properties and plant diversity have been shown to affect ecosystem functions in alpine meadow ecosystems. However, we know little about the relative importance of these factors in driving the responses of multiple ecosystem functions simultaneously (multifunctionality) to nitrogen (N) enrichment. Here, we measured soil abiotic properties (soil pH; available nitrogen, AN; available phosphorous, AP; and dissolved organic carbon, DOC) and multiple plant diversity metrics (species diversity, SD; functional diversity, FD; and phylogenetic diversity, PD) after a 5-year N fertilization experiment (0, 5, 10, and 15 g N m^-2 yr^-1) to evaluate their roles in mediating the impacts of N addition on aboveground plant functions (APF), soil microbial functions (SMF), and ecosystem multifunctionality (EMF) in a N-limited Tibetan alpine meadow. We found that N addition decreased APF but increased SMF and EMF. Structural equation models (SEMs) showed that APF was co-driven by soil DOC and the community weighted mean for plant traits (CWMs), and SMF was driven by soil DOC, soil AN, CWMs and functional dispersion (FD_is). The effects of N addition on EMF were driven by soil AN and FD_is. Our results suggest that the effects of N enrichment on APF, SMF, and EMF are driven by differential mechanisms. Furthermore, the findings suggest that FD is superior to SD and PD in mediating the responses of ecosystem functions to N enrichment.

Afforestation suppresses soil nitrogen availability and soil multifunctionality on a subtropical grassland

Microbes simultaneously drive multiple functions (multifunctionality) that support human well-being. However, the structure and function of microbial communities and their impact on soil multifunctionality following grassland afforestation remains unknown, thus hindering our ability to formulate conservation policies. We compared soil bacterial and fungal communities, soil abiotic properties, and soil nitrogen (N) function and multifunctionality in the afforested sites that were previously grassland, on a subtropical plateau in China. We also explored the degree to which the niche complementarity effect and the selection effect of microbes are linked to soil N function and multifunctionality. We found that afforestation of grassland significantly decreased pH, available N concentration and density, and soil multifunctionality. However, afforestation significantly increased C (carbon) limitation and shifted soil microbes from being limited by N to, instead, being co-limited by N and P (phosphorus). The significant decrease in available N was primarily driven by soil microbes. In shaping soil N availability, the effect of bacterial diversities was stronger than that of fungal diversities, and the effect of fungal functional diversities was stronger than that of bacterial functional diversities. The effect of functional diversities was greater than that of all the significant changes in the functions and, also, the significant changes in the N-related functions. These results further emphasized that functional niche complementarity dominated soil N availability. In addition, bacterial taxonomic diversities showed positive effects of niche complementarity on soil multifunctionality; ultimately, the losses in bacterial taxonomic diversities derived from the increases in C limitation and the shifts in NP limitation combined to impaired soil multifunctionality. Our results suggested that the optimization of soil microbial functional diversities might increase soil N availability, and that minimizing losses of soil microbial taxonomic diversities by optimizing soil abiotic environments might improve soil multifunctionality.

Phylogenetic Community and Nearest Neighbor Structure of Disturbed Tropical Rain Forests Encroached by Streblus macrophyllus

Although woody plant encroachment of tropical forest ecosystems has been related to altered disturbance regimes, its impacts on the nearest neighborhood structures and community phylogenetics are still poorly understood. Streblus macrophyllus is a light-demanding species during its early life stages and is shade-tolerant as a mature tree. S. macrophyllus can be found in tropical karst evergreen forests in northern Vietnam. It often regenerates at high densities in anthropogenic disturbed forest stands. To understand the structural patterns of disturbed forests encroached by S. macrophyllus at different abundance levels, three fully mapped 1-ha plots were established in Cuc Phuong National Park. Methods considering the phylogenetic community and nearest neighbor statistics were applied to identify how community structure changes during S. macrophyllus encroachment. Results showed that phylogenetic distance, phylogenetic diversity, and mean phylogenetic distance increased when species diversity increased and the abundance of S. macrophyllus decreased in forest communities. Net related index values were positive, which indicates a clustered phylogenetic structure among all sampled forest communities. S. macrophyllus trees were mixed well with heterospecifics and had regular to aggregated distributions, whereas the species showed evidence of being a strong competitor with its neighbors. Competition could be a major ecological process regulating forest communities encroached by S. macrophyllus. According to the forest disturbance effects, phylogenetic community properties showed the loss of phylogenetic relatedness when S. macrophyllus increased in abundance. To our knowledge, S. macrophyllus encroaches tropical rain forest communities as a disturbance-adapted species.

Functional diversity drives ecosystem multifunctionality in a Pinus yunnanensis natural secondary forest

It is essential to understand how the loss of biodiversity impacts both ecosystem function (EF) and multifunctionality (EMF). Previous studies have mostly focused on predicting how species richness (SR) impacts EMF, while the effect of functional diversity (FD) on EMF remains unclear. Specifically, we know little about the primary functional drivers impacting EMF compared with SR. Therefore, we analysed 8 ecosystem functions within 58 natural secondary forest plots to investigate the effect of FD on both individual EF and EMF. Our results suggest that SR and FD had very significant positive effects on plant phosphorus, soil available phosphorus, and soil total nitrogen. FD explained significantly more variations in these functional responses than SR for individual ecosystem functioning. We also used a multiple threshold approach to test the effect of SR and FD on EMF. We found that FD and SR were positively related to EMF regardless of whether low-level function or high-level function was desired, but FD had a larger effect than SR. Based on the averaging approach, OLS regression, multivariate linear regression model and random forest analysis, we found that SR and FD were both drivers of EMF but that FD had a stronger effect and could explain more variation. As such, we conclude that FD drives ecosystem multifunctionality more than SR.

Disentangling the influence of aridity and salinity on community functional and phylogenetic diversity in local dryland vegetation

One of the key hypothesized drivers of community assembly and dynamics is environmental filtering, where environmental stress limits species migration and survival as a result of functional trait convergence. Whereas most such studies focus on large-scale variation in functional traits along a single-factor environmental gradient, the mutual effects of small-scale multiple environmental filtering remain unclear. Furthermore, it has rarely been tested whether the combined effect of aridity and salinity on local dryland vegetation constrains the patterns of functional traits and phylogenetic structures. Across an 8-km long transect in the arid northwest of China, we assessed the role of environmental filtering in shaping community assemblages by testing the hypotheses that aridity and salinity stresses, interspecific competition and phylogenetic structures constrained functional diversity in the local dryland vegetation. Our results showed that aridity significantly increased convergence of the maximum plant height, specific leaf area, leaf area and leaf nitrogen concentration. However, salinity significantly promoted the convergence of only leaf area and leaf nitrogen concentration. In addition, interspecific competition increased the convergence of the maximum plant height and leaf area. Leaf area converged significantly due to phylogenetic history. Aridity filtering, but not salinity filtering, obviously increased the clustering of phylogenetic structure. Interspecific competition and phylogenetic structure had weak effects on functional diversity in local dryland vegetation. In conclusion, compared with salinity filtering, aridity filtering was more important in reducing phylogenetic diversity in dryland vegetation.