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Itoh H, Yamashita H, Wada KC, Yonemaru JI. Real-time emulation of future global warming reveals realistic impacts on the phenological response and quality deterioration in rice. Proc Natl Acad Sci U S A 2024; 121:e2316497121. [PMID: 38739807 PMCID: PMC11126993 DOI: 10.1073/pnas.2316497121] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/22/2023] [Accepted: 04/01/2024] [Indexed: 05/16/2024] Open
Abstract
Decreased production of crops due to climate change has been predicted scientifically. While climate-resilient crops are necessary to ensure food security and support sustainable agriculture, predicting crop growth under future global warming is challenging. Therefore, we aimed to assess the impact of realistic global warming conditions on rice cultivation. We developed a crop evaluation platform, the agro-environment (AE) emulator, which generates diverse environments by implementing the complexity of natural environmental fluctuations in customized, fully artificial lighting growth chambers. We confirmed that the environmental responsiveness of rice obtained in the fluctuation of artificial environments is similar to those exhibited in natural environments by validating our AE emulator using publicly available meteorological data from multiple years at the same location and multiple locations in the same year. Based on the representative concentration pathway, real-time emulation of severe global warming unveiled dramatic advances in the rice life cycle, accompanied by a 35% decrease in grain yield and an 85% increase in quality deterioration, which is higher than the recently reported projections. The transcriptome dynamism showed that increasing temperature and CO2 concentrations synergistically changed the expression of various genes and strengthened the induction of flowering, heat stress adaptation, and CO2 response genes. The predicted severe global warming greatly alters rice environmental adaptability and negatively impacts rice production. Our findings offer innovative applications of artificial environments and insights for enhancing varietal potential and cultivation methods in the future.
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Affiliation(s)
- Hironori Itoh
- Breeding Big Data Management and Utilization Group, Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba, Ibaraki305-8518, Japan
| | - Hiroto Yamashita
- Breeding Big Data Management and Utilization Group, Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba, Ibaraki305-8518, Japan
| | - Kaede C. Wada
- Breeding Big Data Management and Utilization Group, Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba, Ibaraki305-8518, Japan
- Incubation Laboratory, Research Center for Agricultural Information Technology, National Agriculture and Food Research Organization, Tsukuba, Ibaraki305-0856, Japan
| | - Jun-ichi Yonemaru
- Incubation Laboratory, Research Center for Agricultural Information Technology, National Agriculture and Food Research Organization, Tsukuba, Ibaraki305-0856, Japan
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Su TH, Shen Y, Chiang YY, Liu YT, You HM, Lin HC, Kung KN, Huang YM, Lai CM. Species selection as a key factor in the afforestation of coastal salt-affected lands: Insights from pot and field experiments. JOURNAL OF ENVIRONMENTAL MANAGEMENT 2024; 360:121126. [PMID: 38761629 DOI: 10.1016/j.jenvman.2024.121126] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/21/2024] [Revised: 05/03/2024] [Accepted: 05/08/2024] [Indexed: 05/20/2024]
Abstract
Soil salinization is a significant global issue that leads to land degradation and loss of ecological function. In coastal areas, salinization hampers vegetation growth, and forestation efforts can accelerate the recovery of ecological functions and enhance resilience to extreme climates. However, the salinity tolerance of tree species varies due to complex biological factors, and results between lab/greenhouse and field studies are often inconsistent. Moreover, in salinized areas affected by extreme climatic and human impacts, afforestation with indigenous species may face adaptability challenges. Therefore, it is crucial to select appropriate cross-species salinity tolerance indicators that have been validated in the field to enhance the success of afforestation and reforestation efforts. This study focuses on five native coastal tree species in Taiwan, conducting afforestation experiments on salt-affected soils mixed with construction and demolition waste. It integrates short-term controlled experiments with potted seedlings and long-term field observations to establish growth performance and physiological and biochemical parameters indicative of salinity tolerance. Results showed that Heritiera littoralis Dryand. exhibited the highest salinity tolerance, accumulating significant leaf proline under increased salinity. Conversely, Melia azedarach Linn. had the lowest tolerance, evidenced by complete defoliation and reduced biomass under salt stress. Generally, the field growth performance of these species aligns with the results of short-term pot experiments. Leaf malondialdehyde content from pot experiments proved to be a reliable cross-species salinity tolerance indicator, correlating negatively with field relative height growth and survival rates. Additionally, parameters related to the photosynthetic system or water status, measured using portable devices, also moderately indicated field survival, aiding in identifying potential salt-tolerant tree species. This study underscores the pivotal role of species selection in afforestation success, demonstrating that small-scale, short-term salinity control experiments coupled with appropriate assessment tools can effectively identify species suitable for highly saline and degraded environments. This approach not only increases the success of afforestation but also conserves resources needed for field replanting and maintenance, supporting sustainable development goals.
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Affiliation(s)
- Tzu-Hao Su
- Silviculture Division, Taiwan Forestry Research Institute, Taipei City, 100060, Taiwan
| | - Yang Shen
- Department of Forestry, National Chung Hsing University, Taichung City, 402202, Taiwan
| | - Yao-Yu Chiang
- Silviculture Division, Taiwan Forestry Research Institute, Taipei City, 100060, Taiwan
| | - Yu-Ting Liu
- Department of Forestry, National Chung Hsing University, Taichung City, 402202, Taiwan
| | - Han-Ming You
- Silviculture Division, Taiwan Forestry Research Institute, Taipei City, 100060, Taiwan
| | - Hung-Chih Lin
- Silviculture Division, Taiwan Forestry Research Institute, Taipei City, 100060, Taiwan
| | - Kuan-Ning Kung
- Chiayi Research Center, Taiwan Forestry Research Institute, Chiayi City, 600054, Taiwan
| | - Yao-Moan Huang
- Forest Ecology Division, Taiwan Forestry Research Institute, Taipei City, 100060, Taiwan
| | - Chih-Ming Lai
- Silviculture Division, Taiwan Forestry Research Institute, Taipei City, 100060, Taiwan.
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Zhao D, Ma H, Li S, Qi W. Seed germination demonstrates inter-annual variations in alkaline tolerance: a case study in perennial Leymus chinensis. BMC PLANT BIOLOGY 2024; 24:397. [PMID: 38745144 PMCID: PMC11092131 DOI: 10.1186/s12870-024-05112-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/07/2024] [Accepted: 05/07/2024] [Indexed: 05/16/2024]
Abstract
BACKGROUND AND AIMS The escalating issue of soil saline-alkalization poses a growing global challenge. Leymus chinensis is a perennial grass species commonly used in the establishment and renewal of artificial grasslands that is relatively tolerant of saline, alkaline, and drought conditions. Nonetheless, reduced seed setting rates limit its propagation, especially on alkali-degraded grassland. Inter-annual variations have an important effect on seed yield and germination under abiotic stress, and we therefore examined the effect of planting year on seed yield components of L. chinensis. METHODS We grew transplanted L. chinensis seedlings in pots for two (Y2), three (Y3), or four (Y4) years and collected spikes for measurement of seed yield components, including spike length, seed setting rate, grain number per spike, and thousand seed weight. We then collected seeds produced by plants from different planting years and subjected them to alkaline stress (25 mM Na2CO3) for measurement of germination percentage and seedling growth. RESULTS The seed setting rate of L. chinensis decreased with an increasing number of years in pot cultivation, but seed weight increased. Y2 plants had a higher seed setting rate and more grains per spike, whereas Y4 plants had a higher thousand seed weight. The effects of alkaline stress (25 mM Na2CO3) on seed germination were less pronounced for the heavier seeds produced by Y4 plants. Na2CO3 caused a 9.2% reduction in shoot length for seedlings derived from Y4 seeds but a 22.3% increase in shoot length for seedlings derived from Y3 seeds. CONCLUSIONS Our findings demonstrate significant differences in seed yield components among three planting years of L. chinensis under pot cultivation in a finite space. Inter-annual variation in seed set may provide advantages to plants. Increased alkalinity tolerance of seed germination was observed for seeds produced in successive planting years.
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Affiliation(s)
- Dandan Zhao
- State Key Laboratory of Black Soils Conservation and Utilization, Northeast institute of Geography and Agroecology, Chinese Academy of Sciences, Changchun, Jilin, 130102, China
- Shandong Key Laboratory of Eco-Environmental Science for Yellow River Delta, Shandong University of Aeronautics, Binzhou, Shandong, 256603, China
| | - Hongyuan Ma
- State Key Laboratory of Black Soils Conservation and Utilization, Northeast institute of Geography and Agroecology, Chinese Academy of Sciences, Changchun, Jilin, 130102, China.
| | - Shaoyang Li
- State Key Laboratory of Black Soils Conservation and Utilization, Northeast institute of Geography and Agroecology, Chinese Academy of Sciences, Changchun, Jilin, 130102, China
| | - Wenwen Qi
- State Key Laboratory of Black Soils Conservation and Utilization, Northeast institute of Geography and Agroecology, Chinese Academy of Sciences, Changchun, Jilin, 130102, China
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4
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Bellec L, Hervé MR, Mercier AS, Lenal PA, Faure S, Cortesero AM. A protocol for increased throughput phenotyping of plant resistance to the pollen beetle. PEST MANAGEMENT SCIENCE 2024; 80:2235-2240. [PMID: 36309935 DOI: 10.1002/ps.7266] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/20/2022] [Revised: 10/25/2022] [Accepted: 10/30/2022] [Indexed: 06/16/2023]
Abstract
BACKGROUND Improving crop resistance to insect herbivores is a major research objective in breeding programs. Although genomic technologies have increased the speed at which large populations can be genotyped, breeding programs still suffer from phenotyping constraints. The pollen beetle (Brassicogethes aeneus) is a major pest of oilseed rape for which no resistant cultivar is available to date, but previous studies have highlighted the potential of white mustard as a source of resistance and introgression of this resistance appears to be a promising strategy. Here we present a phenotyping protocol allowing mid-throughput (i.e., increased throughput compared to current methods) acquisition of resistance data, which could then be used for genetic mapping of QTLs. RESULTS Contrasted white mustard genotypes were selected from an initial field screening and then evaluated for their resistance under controlled conditions using a standard phenotyping method on entire plants. We then upgraded this protocol for mid-throughput phenotyping, by testing two alternative methods. We found that phenotyping on detached buds did not provide the same resistance contrasts as observed with the standard protocol, in contrast to the phenotyping protocol with miniaturized plants. This protocol was then tested on a large panel composed of hundreds of plants. A significant variation in resistance among genotypes was observed, which validates the large-scale application of this new phenotyping protocol. CONCLUSION The combination of this mid-throughput phenotyping protocol and white mustard as a source of resistance against the pollen beetle offers a promising avenue for breeding programs aiming to improve oilseed rape resistance. © 2022 The Authors. Pest Management Science published by John Wiley & Sons Ltd on behalf of Society of Chemical Industry.
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Affiliation(s)
- Laura Bellec
- IGEPP-UMR 1349, INRAE, Institut Agro, Univ Rennes 1, Rennes, France
- Innolea, 6 Chemin de Panedautes, Mondonville, France
| | - Maxime R Hervé
- IGEPP-UMR 1349, INRAE, Institut Agro, Univ Rennes 1, Rennes, France
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Pugliese M, Gilardi G, Garibaldi A, Gullino ML. The Impact of Climate Change on Vegetable Crop Diseases and Their Management: The Value of Phytotron Studies for the Agricultural Industry and Associated Stakeholders. PHYTOPATHOLOGY 2024; 114:843-854. [PMID: 38648074 DOI: 10.1094/phyto-08-23-0284-kc] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 04/25/2024]
Abstract
Climate change is having a significant impact on global agriculture, particularly on vegetable crops, which play a critical role in global nutrition. Recently, increasing research has concentrated on the impact of climate change on vegetable crop diseases, with several studies being conducted in phytotrons, which have been used to explore the effects of increased temperatures and CO2 concentrations to simulate future scenarios. This review focuses on the combined effects of temperature and carbon dioxide increases on foliar and soilborne vegetable diseases, as evaluated under phytotron conditions. The influence of climate change on mycotoxin production and disease management strategies is also explored through case studies. The results offer valuable information that can be used to guide both seed and agrochemical industries, as well as to develop disease-resistant varieties and innovative control measures, including biocontrol agents, considering the diseases that are likely to become prevalent under future climatic scenarios. Recommendations on how to manage vegetable diseases under ongoing climate change are proposed to facilitate plants' adaptation to and enhanced against the changing conditions. A proactive and comprehensive response to climate-induced challenges in vegetable farming is imperative to ensure food security and sustainability.
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Akula NN, Abdelhakim L, Knazovický M, Ottosen CO, Rosenqvist E. Plant responses to co-occurring heat and water deficit stress: A comparative study of tolerance mechanisms in old and modern wheat genotypes. PLANT PHYSIOLOGY AND BIOCHEMISTRY : PPB 2024; 210:108595. [PMID: 38581807 DOI: 10.1016/j.plaphy.2024.108595] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/04/2024] [Revised: 03/11/2024] [Accepted: 04/01/2024] [Indexed: 04/08/2024]
Abstract
Global climate change increases the likelihood of co-occurrence of hot and dry spells with increased intensity, frequency, and duration. Studying the impact of the two stresses provide a better understanding of tolerance mechanisms in wheat, and our study was focused on revealing plant stress responses to different severities of combined stress at two phenophases in old and modern wheat genotypes. During the stem elongation and anthesis stages, plants were exposed to four treatments: control, deficit irrigation, combined heat, and deficit irrigation at 31 °C (HD31) and 37 °C (HD37). The modern genotypes were less affected by deficit irrigation at stem elongation as they maintained higher photosynthesis, stomatal conductance, and leaf cooling than old genotypes. When the HD37 stress was imposed during anthesis, the modern genotypes exhibited superior performance compared to the old, which was due to their higher photosynthetic rates resulting from improved biochemical regulation and a higher chlorophyll content. The plant responses varied during two phenophases under the combined stress exposure. Genotypes subjected to HD37 stress during stem elongation, photosynthesis was mainly controlled by stomatal regulation, whereas at anthesis it was predominated by biochemical regulation. These findings contribute to a deeper comprehension of plant tolerance mechanisms in response to different intensities of co-occurring hot and dry weather conditions.
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Affiliation(s)
- Nagashree N Akula
- Department of Food Science, Plant, Food & Climate, Aarhus University, Agro Food Park 48, DK-8200, Aarhus N, Denmark.
| | - Lamis Abdelhakim
- Department of Food Science, Plant, Food & Climate, Aarhus University, Agro Food Park 48, DK-8200, Aarhus N, Denmark
| | - Mikulás Knazovický
- Department of Food Science, Plant, Food & Climate, Aarhus University, Agro Food Park 48, DK-8200, Aarhus N, Denmark
| | - Carl-Otto Ottosen
- Department of Food Science, Plant, Food & Climate, Aarhus University, Agro Food Park 48, DK-8200, Aarhus N, Denmark
| | - Eva Rosenqvist
- Department of Plant and Environmental Sciences, Crop Sciences, University of Copenhagen, Hoejbakkegaard Allé 9, DK-2630, Taastrup, Denmark
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Karpe M, Marcelis LFM, Heuvelink E. Dynamic plant spacing in tomato results in high yields while mitigating the reduction in fruit quality associated with high planting densities. FRONTIERS IN PLANT SCIENCE 2024; 15:1386950. [PMID: 38699540 PMCID: PMC11063277 DOI: 10.3389/fpls.2024.1386950] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 02/16/2024] [Accepted: 03/27/2024] [Indexed: 05/05/2024]
Abstract
High planting densities achieve high light interception and harvestable yield per area but at the expense of product quality. This study aimed to maintain high light interception without negative impacts on fruit quality. Dwarf tomato was grown at four densities in a climate-controlled room-at two constant densities (high and low) and two dynamic spacing treatments (maintaining 90% and 75% ground coverage by decreasing planting density in 3-4 steps)-resulting in ~100, 19, 54, and 41 plants/m2 averaged over 100 days of cultivation, respectively. Constant high density resulted in the highest light use efficiency (LUE; 7.7 g fruit fresh weight per mol photons incident on the canopy) and the highest harvestable fruit yield (11.1 kg/m2) but the lowest fruit size and quality. Constant low density resulted in the lowest LUE and yield (2.3 g/mol and 3.2 kg/m2, respectively), but higher fruit size and quality than high density. Compared to low density, maintaining 90% ground coverage increased yield (9.1 kg/m2) and LUE (6.4 g/mol). Maintaining 75% ground coverage resulted in a 7.2 kg/m2 yield and 5.1 g/mol LUE. Both dynamic spacing treatments attained the same or slightly reduced fruit quality compared to low density. Total plant weight per m2 increased with planting density and saturated at a constant high density. Assimilate shortage at the plant level and flower abortion lowered harvestable fruit yield per plant, sweetness, and acidity under constant high density. Harvestable fruit yield per plant was the highest under dynamic spacing and low density. Under constant high density, morphological responses to lower light availability per plant-i.e., higher specific leaf area, internode elongation, and increased slenderness-coincided with the improved whole-plant LUE (g plant dry weight per mol photons). We conclude that a constant high planting density results in the highest harvestable fruit yield per area, but with reduced fruit quality. Dynamic spacing during cultivation produces the same fruit quality as constant low density, but with more than double the harvestable yield per area.
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Affiliation(s)
| | - Leo F. M. Marcelis
- Horticulture and Product Physiology, Department of Plant Sciences, Wageningen University & Research, Wageningen, Netherlands
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Roth L, Kronenberg L, Aasen H, Walter A, Hartung J, van Eeuwijk F, Piepho HP, Hund A. High-throughput field phenotyping reveals that selection in breeding has affected the phenology and temperature response of wheat in the stem elongation phase. JOURNAL OF EXPERIMENTAL BOTANY 2024; 75:2084-2099. [PMID: 38134290 DOI: 10.1093/jxb/erad481] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/08/2022] [Accepted: 12/19/2023] [Indexed: 12/24/2023]
Abstract
Crop growth and phenology are driven by seasonal changes in environmental variables, with temperature as one important factor. However, knowledge about genotype-specific temperature response and its influence on phenology is limited. Such information is fundamental to improve crop models and adapt selection strategies. We measured the increase in height of 352 European winter wheat varieties in 4 years to quantify phenology, and fitted an asymptotic temperature response model. The model used hourly fluctuations in temperature to parameterize the base temperature (Tmin), the temperature optimum (rmax), and the steepness (lrc) of growth responses. Our results show that higher Tmin and lrc relate to an earlier start and end of stem elongation. A higher rmax relates to an increased final height. Both final height and rmax decreased for varieties originating from the continental east of Europe towards the maritime west. A genome-wide association study (GWAS) indicated a quantitative inheritance and a large degree of independence among loci. Nevertheless, genomic prediction accuracies (GBLUPs) for Tmin and lrc were low (r≤0.32) compared with other traits (r≥0.59). As well as known, major genes related to vernalization, photoperiod, or dwarfing, the GWAS indicated additional, as yet unknown loci that dominate the temperature response.
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Affiliation(s)
- Lukas Roth
- ETH Zurich, Institute of Agricultural Sciences, Universitätstrasse 2, 8092 Zurich, Switzerland
| | - Lukas Kronenberg
- ETH Zurich, Institute of Agricultural Sciences, Universitätstrasse 2, 8092 Zurich, Switzerland
| | - Helge Aasen
- ETH Zurich, Institute of Agricultural Sciences, Universitätstrasse 2, 8092 Zurich, Switzerland
- Agroscope, Earth Observation of Agroecosystems Team, Division Agroecology and Environment, Reckenholzstrasse 191, 8046 Zurich, Switzerland
| | - Achim Walter
- ETH Zurich, Institute of Agricultural Sciences, Universitätstrasse 2, 8092 Zurich, Switzerland
| | - Jens Hartung
- University of Hohenheim, Institute for Crop Science, Biostatistics Unit, Fruwirthstrasse 23, D-70593 Stuttgart, Germany
| | - Fred van Eeuwijk
- Wageningen University and Research, Biometris, PO Box 16, 6700 AA Wageningen, The Netherlands
| | - Hans-Peter Piepho
- University of Hohenheim, Institute for Crop Science, Biostatistics Unit, Fruwirthstrasse 23, D-70593 Stuttgart, Germany
| | - Andreas Hund
- ETH Zurich, Institute of Agricultural Sciences, Universitätstrasse 2, 8092 Zurich, Switzerland
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Robles-Zazueta CA, Crespo-Herrera LA, Piñera-Chavez FJ, Rivera-Amado C, Aradottir GI. Climate change impacts on crop breeding: Targeting interacting biotic and abiotic stresses for wheat improvement. THE PLANT GENOME 2024; 17:e20365. [PMID: 37415292 DOI: 10.1002/tpg2.20365] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/14/2023] [Revised: 05/23/2023] [Accepted: 05/30/2023] [Indexed: 07/08/2023]
Abstract
Wheat (Triticum aestivum L.) as a staple crop is closely interwoven into the development of modern society. Its influence on culture and economic development is global. Recent instability in wheat markets has demonstrated its importance in guaranteeing food security across national borders. Climate change threatens food security as it interacts with a multitude of factors impacting wheat production. The challenge needs to be addressed with a multidisciplinary perspective delivered across research, private, and government sectors. Many experimental studies have identified the major biotic and abiotic stresses impacting wheat production, but fewer have addressed the combinations of stresses that occur simultaneously or sequentially during the wheat growth cycle. Here, we argue that biotic and abiotic stress interactions, and the genetics and genomics underlying them, have been insufficiently addressed by the crop science community. We propose this as a reason for the limited transfer of practical and feasible climate adaptation knowledge from research projects into routine farming practice. To address this gap, we propose that novel methodology integration can align large volumes of data available from crop breeding programs with increasingly cheaper omics tools to predict wheat performance under different climate change scenarios. Underlying this is our proposal that breeders design and deliver future wheat ideotypes based on new or enhanced understanding of the genetic and physiological processes that are triggered when wheat is subjected to combinations of stresses. By defining this to a trait and/or genetic level, new insights can be made for yield improvement under future climate conditions.
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Affiliation(s)
- Carlos A Robles-Zazueta
- Global Wheat Program, International Maize and Wheat Improvement Center (CIMMYT), Texcoco, México
| | | | | | - Carolina Rivera-Amado
- Global Wheat Program, International Maize and Wheat Improvement Center (CIMMYT), Texcoco, México
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Caracciolo L, Philippi J, Theeuwen TPJM, van Amerongen H, Harbinson J. An open-source controller to build a dynamic light intensity setup. PLANT METHODS 2024; 20:35. [PMID: 38419125 PMCID: PMC10902962 DOI: 10.1186/s13007-024-01159-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/01/2023] [Accepted: 02/14/2024] [Indexed: 03/02/2024]
Abstract
BACKGROUND The development and physiology of plants are influenced by light intensity and its changes. Despite the significance of this phenomenon, there is a lack of understanding regarding the processes light regulates. This lack of understanding is partly due to the complexity of plant's responses, but also due to the limited availability of light setups capable of producing specific light patterns. RESULTS While unraveling the complexities of plant responses will require further studies, this research proposes a simple method to implement dynamic light setups. In this study, we introduce two distinct electronic circuits that are cost-effective and enable the control of a dimmable power supply. CONCLUSION This method enables the generation of intricate light patterns and rapid intensity fluctuations, providing a means to investigate how plants respond and develop when exposed to dynamic light conditions.
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Affiliation(s)
- Ludovico Caracciolo
- Laboratory of Biophysics, Wageningen University, 6700 ET, Wageningen, The Netherlands.
| | - John Philippi
- Laboratory of Biophysics, Wageningen University, 6700 ET, Wageningen, The Netherlands
| | - Tom P J M Theeuwen
- Jan IngenHousz Institute, Bornsesteeg 48, 6708 PE, Wageningen, The Netherlands
| | - Herbert van Amerongen
- Laboratory of Biophysics, Wageningen University, 6700 ET, Wageningen, The Netherlands
- MicroSpectroscopy Research Facility, Wageningen University, 6700 ET, Wageningen, The Netherlands
| | - Jeremy Harbinson
- Laboratory of Biophysics, Wageningen University, 6700 ET, Wageningen, The Netherlands
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11
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Hostetler AN, Morais de Sousa Tinoco S, Sparks EE. Root responses to abiotic stress: a comparative look at root system architecture in maize and sorghum. JOURNAL OF EXPERIMENTAL BOTANY 2024; 75:553-562. [PMID: 37798135 DOI: 10.1093/jxb/erad390] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/31/2023] [Accepted: 10/04/2023] [Indexed: 10/07/2023]
Abstract
Under all environments, roots are important for plant anchorage and acquiring water and nutrients. However, there is a knowledge gap regarding how root architecture contributes to stress tolerance in a changing climate. Two closely related plant species, maize and sorghum, have distinct root system architectures and different levels of stress tolerance, making comparative analysis between these two species an ideal approach to resolve this knowledge gap. However, current research has focused on shared aspects of the root system that are advantageous under abiotic stress conditions rather than on differences. Here we summarize the current state of knowledge comparing the root system architecture relative to plant performance under water deficit, salt stress, and low phosphorus in maize and sorghum. Under water deficit, steeper root angles and deeper root systems are proposed to be advantageous for both species. In saline soils, a reduction in root length and root number has been described as advantageous, but this work is limited. Under low phosphorus, root systems that are shallow and wider are beneficial for topsoil foraging. Future work investigating the differences between these species will be critical for understanding the role of root system architecture in optimizing plant production for a changing global climate.
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Affiliation(s)
- Ashley N Hostetler
- Department of Plant and Soil Sciences and the Delaware Biotechnology Institute, University of Delaware, Newark, DE 19711, USA
| | | | - Erin E Sparks
- Department of Plant and Soil Sciences and the Delaware Biotechnology Institute, University of Delaware, Newark, DE 19711, USA
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12
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Li S, Baldwin G, Yang C, Lu R, Meng S, Huang J, Wang M, Baldwin IT. Field-work reveals a novel function for MAX2 in a native tobacco's high-light adaptions. PLANT, CELL & ENVIRONMENT 2024; 47:230-245. [PMID: 37750501 DOI: 10.1111/pce.14728] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/11/2023] [Revised: 08/18/2023] [Accepted: 09/13/2023] [Indexed: 09/27/2023]
Abstract
Laboratory studies have revealed that strigolatone (SL) and karrikin (KAR) signalling mediate responses to abiotic and biotic stresses, and reshape branching architecture that could increase reproductive performance and crop yields. To understand the ecological function of SL and KAR signalling, transgenic lines of wild tobacco Nicotiana attenuata, silenced in SL/KAR biosynthesis/signalling were grown in the glasshouse and in two field plots in the Great Basin Desert in Utah over four field seasons. Of the lines silenced in SL and KAR signalling components (irMAX2, irD14, irKAI2 and irD14 × irKAI2 plants), which exhibited the expected increases in shoot branching, only irMAX2 plants showed a strong leaf-bleaching phenotype when grown in the field. In the field, irMAX2 plants had lower sugar and higher leaf amino acid contents, lower lifetime fitness and were more susceptible to herbivore attack compared to wild-type plants. These irMAX2 phenotypes were not observed in glasshouse-grown plants. Transcriptomic analysis revealed dramatic responses to high-light intensity in irMAX2 leaves in the field: lutein contents decreased, and transcriptional responses to high-intensity light, singlet oxygen and hydrogen peroxide increased. PAR and UV-B manipulations in the field revealed that the irMAX2 bleaching phenotype is reversed by decreasing PAR, but not UV-B fluence. We propose that NaMAX2 functions in high-light adaptation and fitness optimisation by regulating high-light responses independently of its roles in the SL and KAR signalling pathways. The work provides another example of the value of studying the function of genes in the complex environments in which plants evolved, namely nature.
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Affiliation(s)
- Suhua Li
- Shenzhen Branch, Guangdong Laboratory of Lingnan Modern Agriculture, Key Laboratory of Synthetic Biology, Ministry of Agriculture and Rural Affairs, Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences, Shenzhen, China
- Department of Molecular Ecology, Max Planck Institute for Chemical Ecology, Jena, Germany
| | - Gundega Baldwin
- Department of Molecular Ecology, Max Planck Institute for Chemical Ecology, Jena, Germany
| | - Caiqiong Yang
- Department of Molecular Ecology, Max Planck Institute for Chemical Ecology, Jena, Germany
| | - Ruirui Lu
- Shenzhen Branch, Guangdong Laboratory of Lingnan Modern Agriculture, Key Laboratory of Synthetic Biology, Ministry of Agriculture and Rural Affairs, Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences, Shenzhen, China
| | - Shuaishuai Meng
- Shenzhen Branch, Guangdong Laboratory of Lingnan Modern Agriculture, Key Laboratory of Synthetic Biology, Ministry of Agriculture and Rural Affairs, Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences, Shenzhen, China
| | - Jianbei Huang
- Department of Biogeochemical Processes, Max Planck Institute for Biogeochemistry, Jena, Germany
| | - Ming Wang
- Department of Molecular Ecology, Max Planck Institute for Chemical Ecology, Jena, Germany
- Department of Plant Pathology, Nanjing Agricultural University, Nanjing, China
| | - Ian T Baldwin
- Department of Molecular Ecology, Max Planck Institute for Chemical Ecology, Jena, Germany
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13
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Zhang P, Chen Z, Wang F, Wu H, Hao L, Jiang X, Yu Z, Zou L, Jiang H. Response and inversion of skewness parameters to meteorological factors based on RGB model of leaf color digital image. PLoS One 2023; 18:e0288818. [PMID: 37967130 PMCID: PMC10650994 DOI: 10.1371/journal.pone.0288818] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/09/2023] [Accepted: 07/04/2023] [Indexed: 11/17/2023] Open
Abstract
In the natural environment, complex and changeable meteorological factors can influence changes in the internal physiology and phenotype of crops. It is important to learn how to convert complex meteorological factor stimuli into plant perception phenotypes when analyzing the biological data obtained under the natural field condition. We restored the true gradation distribution of leaf color, which is also known as the skewed distribution of color scale, and obtained 20 multi-dimensional color gradation skewness-distribution (CGSD) parameters based on the leaf color skewness parameter system. Furthermore, we analyzed the correlation between the five corresponding meteorological factors and canopy CGSD parameters of peppers growing in a greenhouse and cabbages growing in an open air environment, built response model and inversion mode of leaf color to meteorological factors. Based on the analysis, we find a new method for correlating complex environmental problems with multi-dimensional parameters. This study provides a new idea for building a correlation model that uses leaf color as a bridge between meteorological factors and plants internal physiological state.
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Affiliation(s)
- Pei Zhang
- Jiangsu Meteorological Bureau, Nanjing, China
| | - Zhengmeng Chen
- Longyan Company of Fujian Provincial Tobacco Corporation, Longyan, China
| | - Fuzheng Wang
- QinGengRen Modern Agricultural Science and Technology Development (Huai’an) Co., Ltd., Huai’an, China
| | - Hongyan Wu
- Jiangsu Meteorological Bureau, Nanjing, China
| | - Ling Hao
- Lianyungang Meteorological Bureau, Lianyungang, China
| | - Xu Jiang
- Tufts University, Boston, MA, United States of America
| | - Zhiming Yu
- Key Laboratory of Crop Physiology and Ecology in Southern China, Ministry of Agriculture, Jiangsu Collaborative Innovation Center for Modern Crop Prodution, National Engineering and Technology Center for Information Agriculture, Nanjing Agricultural University, Nanjing, People’s Republic of China
| | - Lina Zou
- Longyan Company of Fujian Provincial Tobacco Corporation, Longyan, China
| | - Haidong Jiang
- Key Laboratory of Crop Physiology and Ecology in Southern China, Ministry of Agriculture, Jiangsu Collaborative Innovation Center for Modern Crop Prodution, National Engineering and Technology Center for Information Agriculture, Nanjing Agricultural University, Nanjing, People’s Republic of China
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14
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Li S, Leakey ADB, Moller CA, Montes CM, Sacks EJ, Lee D, Ainsworth EA. Similar photosynthetic but different yield responses of C 3 and C 4 crops to elevated O 3. Proc Natl Acad Sci U S A 2023; 120:e2313591120. [PMID: 37948586 PMCID: PMC10655586 DOI: 10.1073/pnas.2313591120] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/21/2023] [Accepted: 10/06/2023] [Indexed: 11/12/2023] Open
Abstract
The deleterious effects of ozone (O3) pollution on crop physiology, yield, and productivity are widely acknowledged. It has also been assumed that C4 crops with a carbon concentrating mechanism and greater water use efficiency are less sensitive to O3 pollution than C3 crops. This assumption has not been widely tested. Therefore, we compiled 46 journal articles and unpublished datasets that reported leaf photosynthetic and biochemical traits, plant biomass, and yield in five C3 crops (chickpea, rice, snap bean, soybean, and wheat) and four C4 crops (sorghum, maize, Miscanthus × giganteus, and switchgrass) grown under ambient and elevated O3 concentration ([O3]) in the field at free-air O3 concentration enrichment (O3-FACE) facilities over the past 20 y. When normalized by O3 exposure, C3 and C4 crops showed a similar response of leaf photosynthesis, but the reduction in chlorophyll content, fluorescence, and yield was greater in C3 crops compared with C4 crops. Additionally, inbred and hybrid lines of rice and maize showed different sensitivities to O3 exposure. This study quantitatively demonstrates that C4 crops respond less to elevated [O3] than C3 crops. This understanding could help maintain cropland productivity in an increasingly polluted atmosphere.
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Affiliation(s)
- Shuai Li
- Center for Advanced Bioenergy and Bioproducts Innovation, University of Illinois at Urbana-Champaign, Urbana, IL61801
- Carl R. Woese Institute for Genomic Biology, University of Illinois at Urbana-Champaign, Urbana, IL61801
- Institute for Sustainability, Energy, and Environment, University of Illinois at Urbana-Champaign, Urbana, IL61801
| | - Andrew D. B. Leakey
- Center for Advanced Bioenergy and Bioproducts Innovation, University of Illinois at Urbana-Champaign, Urbana, IL61801
- Carl R. Woese Institute for Genomic Biology, University of Illinois at Urbana-Champaign, Urbana, IL61801
- Department of Plant Biology, University of Illinois at Urbana-Champaign, Urbana, IL61801
| | - Christopher A. Moller
- Carl R. Woese Institute for Genomic Biology, University of Illinois at Urbana-Champaign, Urbana, IL61801
- Global Change and Photosynthesis Research Unit, US Department of Agriculture, Agricultural Research Service, Urbana, IL61801
| | - Christopher M. Montes
- Carl R. Woese Institute for Genomic Biology, University of Illinois at Urbana-Champaign, Urbana, IL61801
- Department of Plant Biology, University of Illinois at Urbana-Champaign, Urbana, IL61801
- Global Change and Photosynthesis Research Unit, US Department of Agriculture, Agricultural Research Service, Urbana, IL61801
| | - Erik J. Sacks
- Center for Advanced Bioenergy and Bioproducts Innovation, University of Illinois at Urbana-Champaign, Urbana, IL61801
- Department of Crop Sciences, University of Illinois at Urbana-Champaign, Urbana, IL61801
| | - DoKyoung Lee
- Center for Advanced Bioenergy and Bioproducts Innovation, University of Illinois at Urbana-Champaign, Urbana, IL61801
- Department of Crop Sciences, University of Illinois at Urbana-Champaign, Urbana, IL61801
| | - Elizabeth A. Ainsworth
- Center for Advanced Bioenergy and Bioproducts Innovation, University of Illinois at Urbana-Champaign, Urbana, IL61801
- Carl R. Woese Institute for Genomic Biology, University of Illinois at Urbana-Champaign, Urbana, IL61801
- Department of Plant Biology, University of Illinois at Urbana-Champaign, Urbana, IL61801
- Global Change and Photosynthesis Research Unit, US Department of Agriculture, Agricultural Research Service, Urbana, IL61801
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15
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Appiah M, Abdulai I, Schulman AH, Moshelion M, Dewi ES, Daszkowska-Golec A, Bracho-Mujica G, Rötter RP. Drought response of water-conserving and non-conserving spring barley cultivars. FRONTIERS IN PLANT SCIENCE 2023; 14:1247853. [PMID: 37941662 PMCID: PMC10628443 DOI: 10.3389/fpls.2023.1247853] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 06/26/2023] [Accepted: 09/21/2023] [Indexed: 11/10/2023]
Abstract
Introduction Breeding barley cultivars adapted to drought requires in-depth knowledge on physiological drought responses. Methods We used a high-throughput functional phenotyping platform to examine the response of four high-yielding European spring barley cultivars to a standardized drought treatment imposed around flowering. Results Cv. Chanell showed a non-conserving water-use behavior with high transpiration and maximum productivity under well-watered conditions but rapid transpiration decrease under drought. The poor recovery upon re-irrigation translated to large yield losses. Cv. Baronesse showed the most water-conserving behavior, with the lowest pre-drought transpiration and the most gradual transpiration reduction under drought. Its good recovery (resilience) prevented large yield losses. Cv. Formula was less conserving than cv. Baronesse and produced low yet stable yields. Cv. RGT's dynamic water use with high transpiration under ample water supply and moderate transpiration decrease under drought combined with high resilience secured the highest and most stable yields. Discussion Such a dynamic water-use behavior combined with higher drought resilience and favorable root traits could potentially create an ideotype for intermediate drought. Prospective studies will examine these results in field experiments and will use the newly gained understanding on water use in barley to improve process descriptions in crop simulation models to support crop model-aided ideotype design.
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Affiliation(s)
- Mercy Appiah
- Department of Crop Sciences, Tropical Plant Production and Agricultural Systems Modelling (TROPAGS), University of Göttingen, Göttingen, Germany
| | - Issaka Abdulai
- Department of Crop Sciences, Tropical Plant Production and Agricultural Systems Modelling (TROPAGS), University of Göttingen, Göttingen, Germany
| | - Alan H. Schulman
- Production Systems, Natural Resources Institute Finland (LUKE), Helsinki, Finland
- Institute of Biotechnology and Viikki Plant Science Centre, University of Helsinki, Helsinki, Finland
| | - Menachem Moshelion
- Institute of Plant Sciences and Genetics in Agriculture, The Robert H. Smith Faculty of Agriculture, Food and Environment, The Hebrew University of Jerusalem, Rehovot, Israel
| | - Elvira S. Dewi
- Department of Crop Sciences, Tropical Plant Production and Agricultural Systems Modelling (TROPAGS), University of Göttingen, Göttingen, Germany
- Department of Agroecotechnology, Faculty of Agriculture, Universitas Malikussaleh, Aceh Utara, Indonesia
| | - Agata Daszkowska-Golec
- Institute of Biology, Biotechnology and Environmental Protection, University of Silesia in Katowice, Katowice, Poland
| | - Gennady Bracho-Mujica
- Department of Crop Sciences, Tropical Plant Production and Agricultural Systems Modelling (TROPAGS), University of Göttingen, Göttingen, Germany
| | - Reimund P. Rötter
- Department of Crop Sciences, Tropical Plant Production and Agricultural Systems Modelling (TROPAGS), University of Göttingen, Göttingen, Germany
- Centre for Biodiversity and Sustainable Land Use (CBL), University of Göttingen, Göttingen, Germany
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16
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Bouidghaghen J, Moreau L, Beauchêne K, Chapuis R, Mangel N, Cabrera-Bosquet L, Welcker C, Bogard M, Tardieu F. Robotized indoor phenotyping allows genomic prediction of adaptive traits in the field. Nat Commun 2023; 14:6603. [PMID: 37857601 PMCID: PMC10587076 DOI: 10.1038/s41467-023-42298-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/30/2023] [Accepted: 10/06/2023] [Indexed: 10/21/2023] Open
Abstract
Breeding for resilience to climate change requires considering adaptive traits such as plant architecture, stomatal conductance and growth, beyond the current selection for yield. Robotized indoor phenotyping allows measuring such traits at high throughput for speed breeding, but is often considered as non-relevant for field conditions. Here, we show that maize adaptive traits can be inferred in different fields, based on genotypic values obtained indoor and on environmental conditions in each considered field. The modelling of environmental effects allows translation from indoor to fields, but also from one field to another field. Furthermore, genotypic values of considered traits match between indoor and field conditions. Genomic prediction results in adequate ranking of genotypes for the tested traits, although with lesser precision for elite varieties presenting reduced phenotypic variability. Hence, it distinguishes genotypes with high or low values for adaptive traits, conferring either spender or conservative strategies for water use under future climates.
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Affiliation(s)
- Jugurta Bouidghaghen
- LEPSE, Univ Montpellier, INRAE, Montpellier, France
- ARVALIS, Chemin de la côte vieille, Baziège, France
| | - Laurence Moreau
- GQE-Le Moulon, INRAE, Université Paris-Sud, CNRS, AgroParisTech, Université Paris-Saclay, Gif-sur-Yvette, France
| | - Katia Beauchêne
- ARVALIS, 45 Voie Romaine, Ouzouer-Le-Marché, Beauce La Romaine, France
| | | | - Nathalie Mangel
- ARVALIS, Station de recherche et d'expérimentation, Boigneville, France
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17
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Heuermann MC, Knoch D, Junker A, Altmann T. Natural plant growth and development achieved in the IPK PhenoSphere by dynamic environment simulation. Nat Commun 2023; 14:5783. [PMID: 37723146 PMCID: PMC10507097 DOI: 10.1038/s41467-023-41332-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/20/2022] [Accepted: 08/31/2023] [Indexed: 09/20/2023] Open
Abstract
In plant science, the suboptimal match of growing conditions hampers the transfer of knowledge from controlled environments in glasshouses or climate chambers to field environments. Here we present the PhenoSphere, a plant cultivation infrastructure designed to simulate field-like environments in a reproducible manner. To benchmark the PhenoSphere, the effects on plant growth of weather conditions of a single maize growing season and of an averaged season over three years are compared to those of a standard glasshouse and of four years of field trials. The single season simulation proves superior to the glasshouse and the averaged season in the PhenoSphere: The simulated weather regime of the single season triggers plant growth and development progression very similar to that observed in the field. Hence, the PhenoSphere enables detailed analyses of performance-related trait expression and causal biological mechanisms in plant populations exposed to weather conditions of current and anticipated future climate scenarios.
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Affiliation(s)
- Marc C Heuermann
- Department of Molecular Genetics, Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), Corrensstrasse 3, 06466, Seeland OT Gatersleben, Germany.
| | - Dominic Knoch
- Department of Molecular Genetics, Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), Corrensstrasse 3, 06466, Seeland OT Gatersleben, Germany
| | - Astrid Junker
- Department of Molecular Genetics, Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), Corrensstrasse 3, 06466, Seeland OT Gatersleben, Germany
- Syngenta Seeds GmbH, Zum Knipkenbach 20, 32107, Bad Salzuflen, Germany
| | - Thomas Altmann
- Department of Molecular Genetics, Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), Corrensstrasse 3, 06466, Seeland OT Gatersleben, Germany
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18
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Poorter H, Hummel GM, Nagel KA, Fiorani F, von Gillhaussen P, Virnich O, Schurr U, Postma JA, van de Zedde R, Wiese-Klinkenberg A. Pitfalls and potential of high-throughput plant phenotyping platforms. FRONTIERS IN PLANT SCIENCE 2023; 14:1233794. [PMID: 37680357 PMCID: PMC10481964 DOI: 10.3389/fpls.2023.1233794] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/02/2023] [Accepted: 08/01/2023] [Indexed: 09/09/2023]
Abstract
Automated high-throughput plant phenotyping (HTPP) enables non-invasive, fast and standardized evaluations of a large number of plants for size, development, and certain physiological variables. Many research groups recognize the potential of HTPP and have made significant investments in HTPP infrastructure, or are considering doing so. To make optimal use of limited resources, it is important to plan and use these facilities prudently and to interpret the results carefully. Here we present a number of points that users should consider before purchasing, building or utilizing such equipment. They relate to (1) the financial and time investment for acquisition, operation, and maintenance, (2) the constraints associated with such machines in terms of flexibility and growth conditions, (3) the pros and cons of frequent non-destructive measurements, (4) the level of information provided by proxy traits, and (5) the utilization of calibration curves. Using data from an Arabidopsis experiment, we demonstrate how diurnal changes in leaf angle can impact plant size estimates from top-view cameras, causing deviations of more than 20% over the day. Growth analysis data from another rosette species showed that there was a curvilinear relationship between total and projected leaf area. Neglecting this curvilinearity resulted in linear calibration curves that, although having a high r2 (> 0.92), also exhibited large relative errors. Another important consideration we discussed is the frequency at which calibration curves need to be generated and whether different treatments, seasons, or genotypes require distinct calibration curves. In conclusion, HTPP systems have become a valuable addition to the toolbox of plant biologists, provided that these systems are tailored to the research questions of interest, and users are aware of both the possible pitfalls and potential involved.
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Affiliation(s)
- Hendrik Poorter
- Plant Sciences (IBG-2), Forschungszentrum Jülich GmbH, Jülich, Germany
- Department of Natural Sciences, Macquarie University, North Ryde, NSW, Australia
| | | | - Kerstin A. Nagel
- Plant Sciences (IBG-2), Forschungszentrum Jülich GmbH, Jülich, Germany
| | - Fabio Fiorani
- Plant Sciences (IBG-2), Forschungszentrum Jülich GmbH, Jülich, Germany
| | | | - Olivia Virnich
- Plant Sciences (IBG-2), Forschungszentrum Jülich GmbH, Jülich, Germany
| | - Ulrich Schurr
- Plant Sciences (IBG-2), Forschungszentrum Jülich GmbH, Jülich, Germany
| | | | - Rick van de Zedde
- Plant Sciences Group, Wageningen University & Research, Wageningen, Netherlands
| | - Anika Wiese-Klinkenberg
- Plant Sciences (IBG-2), Forschungszentrum Jülich GmbH, Jülich, Germany
- Bioinformatics (IBG-4), Forschungszentrum Jülich GmbH, Jülich, Germany
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19
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Munns R, Millar AH. Seven plant capacities to adapt to abiotic stress. JOURNAL OF EXPERIMENTAL BOTANY 2023; 74:4308-4323. [PMID: 37220077 PMCID: PMC10433935 DOI: 10.1093/jxb/erad179] [Citation(s) in RCA: 8] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/13/2022] [Accepted: 05/11/2023] [Indexed: 05/25/2023]
Abstract
Abiotic stresses such as drought and heat continue to impact crop production in a warming world. This review distinguishes seven inherent capacities that enable plants to respond to abiotic stresses and continue growing, although at a reduced rate, to achieve a productive yield. These are the capacities to selectively take up essential resources, store them and supply them to different plant parts, generate the energy required for cellular functions, conduct repairs to maintain plant tissues, communicate between plant parts, manage existing structural assets in the face of changed circumstances, and shape-shift through development to be efficient in different environments. By illustration, we show how all seven plant capacities are important for reproductive success of major crop species during drought, salinity, temperature extremes, flooding, and nutrient stress. Confusion about the term 'oxidative stress' is explained. This allows us to focus on the strategies that enhance plant adaptation by identifying key responses that can be targets for plant breeding.
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Affiliation(s)
- Rana Munns
- Australian Research Council Centre of Excellence in Plant Energy Biology, School of Molecular Sciences, University of Western Australia, 35 Stirling Highway, Crawley, WA 6009, Australia
| | - A Harvey Millar
- Australian Research Council Centre of Excellence in Plant Energy Biology, School of Molecular Sciences, University of Western Australia, 35 Stirling Highway, Crawley, WA 6009, Australia
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20
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Lim H, Kobayashi MJ, Marsoem SN, Irawati D, Kosugi A, Kondo T, Tani N. Transcriptomic responses of oil palm ( Elaeis guineensis) stem to waterlogging at plantation in relation to precipitation seasonality. FRONTIERS IN PLANT SCIENCE 2023; 14:1213496. [PMID: 37636106 PMCID: PMC10448820 DOI: 10.3389/fpls.2023.1213496] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 04/28/2023] [Accepted: 07/24/2023] [Indexed: 08/29/2023]
Abstract
Global warming-induced climate change causes significant agricultural problems by increasing the incidence of drought and flooding events. Waterlogging is an inevitable consequence of these changes but its effects on oil palms have received little attention and are poorly understood. Recent waterlogging studies have focused on oil palm seedlings, with particular emphasis on phenology. However, the transcriptomic waterlogging response of mature oil palms remains elusive in real environments. We therefore investigated transcriptomic changes over time in adult oil palms at plantations over a two-year period with pronounced seasonal variation in precipitation. A significant transcriptional waterlogging response was observed in the oil palm stem core but not in leaf samples when gene expression was correlated with cumulative precipitation over two-day periods. Pathways and processes upregulated or enriched in the stem core response included hypoxia, ethylene signaling, and carbon metabolism. Post-waterlogging recovery in oil palms was found to be associated with responses to heat stress and carotenoid biosynthesis. Nineteen transcription factors (TFs) potentially involved in the waterlogging response of mature oil palms were also identified. These data provide new insights into the transcriptomic responses of planted oil palms to waterlogging and offer valuable guidance on the sensitivity of oil palm plantations to future climate changes.
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Affiliation(s)
- Hui Lim
- Graduate School of Science and Technology, University of Tsukuba, Tsukuba, Ibaraki, Japan
| | - Masaki J. Kobayashi
- Forestry Division, Japan International Research Center for Agricultural Sciences (JIRCAS), Tsukuba, Ibaraki, Japan
| | | | - Denny Irawati
- Faculty of Forestry, Universitas Gadjah Mada (UGM), Yogyakarta, Indonesia
| | - Akihiko Kosugi
- Biological Resources and Post-harvest Division, Japan International Research Center for Agricultural Sciences (JIRCAS), Tsukuba, Ibaraki, Japan
- Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba, Ibaraki, Japan
| | - Toshiaki Kondo
- Biological Resources and Post-harvest Division, Japan International Research Center for Agricultural Sciences (JIRCAS), Tsukuba, Ibaraki, Japan
| | - Naoki Tani
- Forestry Division, Japan International Research Center for Agricultural Sciences (JIRCAS), Tsukuba, Ibaraki, Japan
- Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba, Ibaraki, Japan
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21
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Kahn AK, Sicard A, Cooper ML, Daugherty MP, Donegan MA, Almeida RPP. Progression of Xylella fastidiosa Infection in Grapevines Under Field Conditions. PHYTOPATHOLOGY 2023; 113:1465-1473. [PMID: 37080548 DOI: 10.1094/phyto-01-23-0008-r] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/03/2023]
Abstract
The pathogen Xylella fastidiosa subsp. fastidiosa has circulated through California's vineyards since its introduction from Central America in the 1800s. This pathogen is responsible for a bacterial disease called Pierce's disease (PD) of grapevine. With no known cure, PD has had devastating effects on some vineyards. Important factors that impact disease severity and persistence include: the presence of insect vectors, grapevine cultivar, management, ecology, and winter temperatures. Removal of infected vines is critical for reducing pathogen spread but relies on accurate and rapid pathogen detection. In this study, we foster a greater understanding of disease symptom emergence by way of a 3-year field inoculation project in Napa Valley. Although PD emergence and symptom progression have been studied in greenhouse and experimental plots, there is a large knowledge gap in quantifying disease progression under commercial conditions. After inoculating 80 mature Vitis vinifera vines in April 2017, we measured bacterial populations and six symptom types at four locations within each plant throughout the subsequent three growing seasons. The main foci of the project were understanding X. fastidiosa movement through the plants, infection, overwinter curing, and symptom development. We observed greater winter recovery than expected, and shriveled grape clusters proved to be a more reliable early indication of infection than other more commonly used symptoms. Although there were differences among wine grape cultivars, this work suggests that disease progression in the field may not fit the paradigm of predominant leaf scorch and low recovery rates as neatly as has been previously believed.
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Affiliation(s)
- Alexandra K Kahn
- Department of Environmental Science, Policy, and Management, University of California Berkeley, CA 94720
| | - Anne Sicard
- Department of Environmental Science, Policy, and Management, University of California Berkeley, CA 94720
| | - Monica L Cooper
- Division of Agriculture and Natural Resources, University of California, Cooperative Extension, Napa, CA 94559
| | | | - Monica A Donegan
- Department of Environmental Science, Policy, and Management, University of California Berkeley, CA 94720
| | - Rodrigo P P Almeida
- Department of Environmental Science, Policy, and Management, University of California Berkeley, CA 94720
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22
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Marghoob MU, Nawaz A, Ahmad M, Waheed MQ, Khan MH, Imtiaz M, Islam EU, Imran A, Mubeen F. Assessment of halotolerant bacterial and fungal consortia for augmentation of wheat in saline soils. Front Microbiol 2023; 14:1207784. [PMID: 37455747 PMCID: PMC10347533 DOI: 10.3389/fmicb.2023.1207784] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/18/2023] [Accepted: 06/09/2023] [Indexed: 07/18/2023] Open
Abstract
Adaptations of green technologies to counter abiotic stress, including salinity for crops like wheat by using halotolerant microbes, is a promising approach. The current study investigated 17 salt-affected agroecological zones from the Punjab and Sindh provinces of Pakistan to explore the potential of indigenous microbial flora, with their multiple biochemical characteristics in addition to plant growth promoting (PGP) traits, for enhanced wheat production in saline areas. Initially, 297 isolated pure bacterial colonies were screened for salt tolerance, biochemical, and PGP traits. Three bacterial strains belonging to Pantoea spp. and Erwinia rhaphontici with possession of multiple characteristics were selected for the development of the halotolerant bacterial consortium. Inoculation of two local wheat varieties, Faisalabad 2008 and Galaxy 2013, with the consortium for in vitro seed germination assay and sand microcosm experiments exhibited significant improvement of selected plant growth parameters like germination percentage and root structure. Two previously reported PGP fungal strains of Trichoderma harzianum and T. viridae were also used as fungal consortium separately for pot experiments and field trials. The pot experiments exhibited a positive correlation of consortia with metabolic viz. catalase, peroxidase, and proline and agronomical parameters including shoot length, dry weight, number of spikes, spike length, and 100 grain weight. To evaluate their performance under natural environmental conditions, field trials were conducted at three salt-affected sites. Agronomical attributes including days of flowering and maturity, flag leaf weight, length and width, shoot length, number of spikes, spike length, spike weight, number of seeds spike-1, 1,000 grain weight, and plot yield indicated the efficiency of these microbes to enhance wheat growth. Concisely, the bacterial consortium showed better performance and Faisalabad 2008 was a more resistant variety as compared to Galaxy 2013. Initial promising results indicate that further extensive research on indigenous microbes might lead to the development of Pakistan's first saline-specific biofertilizers and sustainable eco-friendly agriculture practices.
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Affiliation(s)
- Muhammad Usama Marghoob
- Soil and Environmental Biotechnology Division, National Institute for Biotechnology and Genetic Engineering, Constituent College of Pakistan Institute of Engineering and Applied Sciences (NIBGE-C, PIEAS), Islamabad, Pakistan
| | - Aniqa Nawaz
- Soil and Environmental Biotechnology Division, National Institute for Biotechnology and Genetic Engineering, Constituent College of Pakistan Institute of Engineering and Applied Sciences (NIBGE-C, PIEAS), Islamabad, Pakistan
| | - Muhammad Ahmad
- Soil and Environmental Biotechnology Division, National Institute for Biotechnology and Genetic Engineering, Constituent College of Pakistan Institute of Engineering and Applied Sciences (NIBGE-C, PIEAS), Islamabad, Pakistan
| | - Muhammad Qandeel Waheed
- Plant Breeding and Genetic Division, Nuclear Institute for Agriculture and Biology (NIAB), Faisalabad, Pakistan
| | - Muhammad Hassaan Khan
- Department of Bioinformatics and Biotechnology, Government College University Faisalabad (GCUF), Faisalabad, Pakistan
| | - Muhammad Imtiaz
- Soil and Environmental Biotechnology Division, National Institute for Biotechnology and Genetic Engineering, Constituent College of Pakistan Institute of Engineering and Applied Sciences (NIBGE-C, PIEAS), Islamabad, Pakistan
| | - Ejaz ul Islam
- Soil and Environmental Biotechnology Division, National Institute for Biotechnology and Genetic Engineering, Constituent College of Pakistan Institute of Engineering and Applied Sciences (NIBGE-C, PIEAS), Islamabad, Pakistan
| | - Asma Imran
- Soil and Environmental Biotechnology Division, National Institute for Biotechnology and Genetic Engineering, Constituent College of Pakistan Institute of Engineering and Applied Sciences (NIBGE-C, PIEAS), Islamabad, Pakistan
| | - Fathia Mubeen
- Soil and Environmental Biotechnology Division, National Institute for Biotechnology and Genetic Engineering, Constituent College of Pakistan Institute of Engineering and Applied Sciences (NIBGE-C, PIEAS), Islamabad, Pakistan
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Dermendjiev G, Schnurer M, Stewart E, Nägele T, Marino G, Leister D, Thür A, Plott S, Jeż J, Ibl V. A bench-top Dark-Root device built with LEGO ® bricks enables a non-invasive plant root development analysis in soil conditions mirroring nature. FRONTIERS IN PLANT SCIENCE 2023; 14:1166511. [PMID: 37324682 PMCID: PMC10264708 DOI: 10.3389/fpls.2023.1166511] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 02/15/2023] [Accepted: 04/28/2023] [Indexed: 06/17/2023]
Abstract
Roots are the hidden parts of plants, anchoring their above-ground counterparts in the soil. They are responsible for water and nutrient uptake and for interacting with biotic and abiotic factors in the soil. The root system architecture (RSA) and its plasticity are crucial for resource acquisition and consequently correlate with plant performance while being highly dependent on the surrounding environment, such as soil properties and therefore environmental conditions. Thus, especially for crop plants and regarding agricultural challenges, it is essential to perform molecular and phenotypic analyses of the root system under conditions as near as possible to nature (#asnearaspossibletonature). To prevent root illumination during experimental procedures, which would heavily affect root development, Dark-Root (D-Root) devices (DRDs) have been developed. In this article, we describe the construction and different applications of a sustainable, affordable, flexible, and easy to assemble open-hardware bench-top LEGO® DRD, the DRD-BIBLOX (Brick Black Box). The DRD-BIBLOX consists of one or more 3D-printed rhizoboxes, which can be filled with soil while still providing root visibility. The rhizoboxes sit in a scaffold of secondhand LEGO® bricks, which allows root development in the dark and non-invasive root tracking with an infrared (IR) camera and an IR light-emitting diode (LED) cluster. Proteomic analyses confirmed significant effects of root illumination on barley root and shoot proteomes. Additionally, we confirmed the significant effect of root illumination on barley root and shoot phenotypes. Our data therefore reinforces the importance of the application of field conditions in the lab and the value of our novel device, the DRD-BIBLOX. We further provide a DRD-BIBLOX application spectrum, spanning from investigating a variety of plant species and soil conditions and simulating different environmental conditions and stresses, to proteomic and phenotypic analyses, including early root tracking in the dark.
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Affiliation(s)
- Georgi Dermendjiev
- Department of Functional and Evolutionary Ecology, Molecular Systems Biology (MoSys), University of Vienna, Vienna, Austria
| | - Madeleine Schnurer
- Department of Functional and Evolutionary Ecology, Molecular Systems Biology (MoSys), University of Vienna, Vienna, Austria
| | - Ethan Stewart
- Plant Sciences Facility, Vienna Biocenter Core Facilities (VBCF), Vienna, Austria
| | - Thomas Nägele
- Faculty of Biology, Plant Evolutionary Cell Biology Ludwig-Maximilians-Universität München, Planegg-Martinsried, Germany
| | - Giada Marino
- Faculty of Biology, Plant Evolutionary Cell Biology Ludwig-Maximilians-Universität München, Planegg-Martinsried, Germany
| | - Dario Leister
- Faculty of Biology, Plant Evolutionary Cell Biology Ludwig-Maximilians-Universität München, Planegg-Martinsried, Germany
| | - Alexandra Thür
- Department of Functional and Evolutionary Ecology, Molecular Systems Biology (MoSys), University of Vienna, Vienna, Austria
| | - Stefan Plott
- Department of Functional and Evolutionary Ecology, Molecular Systems Biology (MoSys), University of Vienna, Vienna, Austria
| | - Jakub Jeż
- Plant Sciences Facility, Vienna Biocenter Core Facilities (VBCF), Vienna, Austria
| | - Verena Ibl
- Department of Functional and Evolutionary Ecology, Molecular Systems Biology (MoSys), University of Vienna, Vienna, Austria
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24
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Yan BF, Cheng-Feng H, Zhao M, Qiu RL, Tang YT. Characterizing the remobilization flux of cadmium from pre-anthesis vegetative pools in rice during grain filling using an improved stable isotope labeling method. ENVIRONMENTAL POLLUTION (BARKING, ESSEX : 1987) 2023; 331:121891. [PMID: 37236585 DOI: 10.1016/j.envpol.2023.121891] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/01/2023] [Revised: 05/04/2023] [Accepted: 05/22/2023] [Indexed: 05/28/2023]
Abstract
A clear understanding of the allocation of Cd to grains is essential to manage the level of Cd in cereal diets effectively. Yet, debate remains over whether and how the pre-anthesis pools contribute to grain Cd accumulation, resulting in uncertainty regarding the need to control plant Cd uptake during vegetative growth. To this end, rice seedlings were exposed to 111Cd labeled solution until tillering, transplanted to unlabeled soils, and grown under open-air conditions. The remobilization of Cd derived from pre-anthesis vegetative pools was studied through the fluxes of 111Cd-enriched label among organs during grain filling. The 111Cd label was continuously allocated to the grain after anthesis. The lower leaves remobilized the Cd label during the earlier stage of grain development, which was allocated almost equally to the grains and husks + rachis. During the final stage, the Cd label was strongly remobilized from the roots and, less importantly, the internodes, which was strongly allocated to the nodes and, to a less extent, the grains. The results show that the pre-anthesis vegetative pools are an important source of Cd in rice grains. The lower leaves, internodes, and roots are the source organs, whereas the husks + rachis and nodes are the sinks competing with the grain for the remobilized Cd. This study provides insight into understanding the ecophysiological mechanism of Cd remobilization and setting agronomic measures for lowering grain Cd levels.
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Affiliation(s)
- Bo-Fang Yan
- School of Environmental Science and Engineering, Sun Yat-sen University, Guangzhou, 510275, China
| | - Hu Cheng-Feng
- School of Environmental Science and Engineering, Sun Yat-sen University, Guangzhou, 510275, China
| | - Man Zhao
- School of Environmental Science and Engineering, Sun Yat-sen University, Guangzhou, 510275, China
| | - Rong-Liang Qiu
- School of Environmental Science and Engineering, Sun Yat-sen University, Guangzhou, 510275, China; Guangdong Laboratory for Lingnan Modern Agriculture, Guangzhou, 510642, China; Guangdong Provincial Key Laboratory of Environmental Pollution Control and Remediation Technology, Sun Yat-sen University, Guangzhou, 510275, China; Guangdong Provincial Engineering Research Center for Heavy Metal Contaminated Soil Remediation, Sun Yat-sen University, Guangzhou, 510275, China; Guangdong Provincial Key Laboratory of Agricultural & Rural Pollution Abatement and Environmental Safety, College of Natural Resources and Environment, South China Agricultural University, Guangzhou, 510642, China
| | - Ye-Tao Tang
- School of Environmental Science and Engineering, Sun Yat-sen University, Guangzhou, 510275, China; Guangdong Laboratory for Lingnan Modern Agriculture, Guangzhou, 510642, China; Guangdong Provincial Key Laboratory of Environmental Pollution Control and Remediation Technology, Sun Yat-sen University, Guangzhou, 510275, China; Guangdong Provincial Engineering Research Center for Heavy Metal Contaminated Soil Remediation, Sun Yat-sen University, Guangzhou, 510275, China.
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25
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Cai H, Des Marais DL. Revisiting regulatory coherence: accounting for temporal bias in plant gene co-expression analyses. THE NEW PHYTOLOGIST 2023; 238:16-24. [PMID: 36617750 DOI: 10.1111/nph.18720] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/27/2022] [Accepted: 12/16/2022] [Indexed: 06/17/2023]
Affiliation(s)
- Haoran Cai
- Department of Civil and Environmental Engineering, MIT, 15 Vassar St., Cambridge, MA, 02139, USA
| | - David L Des Marais
- Department of Civil and Environmental Engineering, MIT, 15 Vassar St., Cambridge, MA, 02139, USA
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26
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Emmanuel CJ, Schoonbeek H, Shaw MW. Microscope studies of symptomless growth of Botrytis cinerea in Lactuca sativa and Arabidopsis thaliana. PLANT PATHOLOGY 2023; 72:564-581. [PMID: 38516180 PMCID: PMC10952648 DOI: 10.1111/ppa.13683] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 06/28/2022] [Revised: 10/06/2022] [Accepted: 11/04/2022] [Indexed: 03/23/2024]
Abstract
The grey mould pathogen Botrytis cinerea forms systemic associations in some hosts, spreading into plant organs produced a considerable time after initial infection. These infections may have no macroscopic symptoms during much of the hosts' lifetime and are at least partially within the host tissue. The aim of the studies reported here was to locate and visualize these infections at a cellular level in Lactuca sativa (lettuce) and Arabidopsis thaliana. Symptomless but infected plants were produced by dry spore inoculation of plants growing in conditions previously shown to result in fungal spread from the initial inoculation site to newly developing plant organs. Tissue taken from inoculated plants was examined using confocal laser scanning microscopy. Two B. cinerea isolates were used: B05.10 and its GFP-labelled derivative Bcgfp1-3. Spore germination on leaf surfaces was followed by development of subcuticular inclusions and plant cell damage in single infected epidermal cells and sometimes a few nearby cells. Sparsely branched long hyphae arose and spread from the inclusions, mostly on the outer surface of the epidermal layer but occasionally below the cuticle or epidermal cells, where further inclusions formed. This was consistent with the pattern in time of recovery of B. cinerea from surface-sterilized leaf tissue. In the late symptomless phase, mycelium arising from internal fungal inclusions formed mycelial networks on the surface of leaves. Symptomless exterior mycelium grew on the roots in A. thaliana.
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Affiliation(s)
| | | | - Michael W. Shaw
- School of Agriculture, Policy and DevelopmentUniversity of ReadingReadingUK
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27
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Birt HWG, Pattison AB, Skarshewski A, Daniells J, Raghavendra A, Dennis PG. The core fungal microbiome of banana (Musa spp.). Front Microbiol 2023; 14:1127779. [PMID: 37065131 PMCID: PMC10098452 DOI: 10.3389/fmicb.2023.1127779] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/20/2022] [Accepted: 03/08/2023] [Indexed: 04/03/2023] Open
Abstract
Here, we report a metabarcoding (ITS2) study to define the common core fungal microbiome (mycobiome) of healthy Musa spp. (bananas and plantains). To identify a list of 21 core fungal taxa, we first characterised the effects of edaphic conditions and host genotype – two factors that are likely to differ between farms – on the diversity of fungal communities in bulk soil and seven plant compartments. This experiment facilitated shortlisting of core ‘candidates’, which were then elevated to full core status if also found to frequent a wide-range of field-grown Musa spp. and exhibit hub-like characteristics in network analyses. Subsequently, we conducted a meta-analysis of eleven publicly available datasets of Musa spp. associated fungi demonstrating that the core fungi identified in our study have close relatives in other countries. The diversity and composition of mycobiomes differed between plant compartments and soils, but not genotypes. The core mycobiome included Fusarium oxysporum and its relatives, which dominated all plant compartments, as well as members of the Sordariomycetes, Dothideomycetes, and Mortierellomycota. Our study provides a robust list of common core fungal taxa for Musa spp. Further studies may consider how changes in the frequencies and activities of these taxa influence host fitness and whether they can be managed to improve banana production.
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Affiliation(s)
- Henry W. G. Birt
- School of Earth and Environmental Sciences, The University of Queensland, Brisbane, QLD, Australia
| | - Anthony B. Pattison
- Department of Agriculture and Fisheries, Centre for Wet Tropics Agriculture, South Johnstone, QLD, Australia
| | - Adam Skarshewski
- School of Earth and Environmental Sciences, The University of Queensland, Brisbane, QLD, Australia
| | - Jeff Daniells
- Department of Agriculture and Fisheries, Centre for Wet Tropics Agriculture, South Johnstone, QLD, Australia
| | - Anil Raghavendra
- School of Earth and Environmental Sciences, The University of Queensland, Brisbane, QLD, Australia
| | - Paul G. Dennis
- School of Earth and Environmental Sciences, The University of Queensland, Brisbane, QLD, Australia
- *Correspondence: Paul G. Dennis,
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28
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Schiphorst C, Koeman C, Caracciolo L, Staring K, Theeuwen TPJM, Driever SM, Harbinson J, Wientjes E. The effects of different daily irradiance profiles on Arabidopsis growth, with special attention to the role of PsbS. FRONTIERS IN PLANT SCIENCE 2023; 14:1070218. [PMID: 36968375 PMCID: PMC10035889 DOI: 10.3389/fpls.2023.1070218] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 10/14/2022] [Accepted: 02/03/2023] [Indexed: 06/18/2023]
Abstract
In nature, light is never constant, while in the controlled environments used for vertical farming, in vitro propagation, or plant production for scientific research, light intensity is often kept constant during the photoperiod. To investigate the effects on plant growth of varying irradiance during the photoperiod, we grew Arabidopsis thaliana under three irradiance profiles: a square-wave profile, a parabolic profile with gradually increasing and subsequently decreasing irradiance, and a regime comprised of rapid fluctuations in irradiance. The daily integral of irradiance was the same for all three treatments. Leaf area, plant growth rate, and biomass at time of harvest were compared. Plants grown under the parabolic profile had the highest growth rate and biomass. This could be explained by a higher average light-use efficiency for carbon dioxide fixation. Furthermore, we compared the growth of wild type plants with that of the PsbS-deficient mutant npq4. PsbS triggers the fast non-photochemical quenching process (qE) that protects PSII from photodamage during sudden increases in irradiance. Based mainly on field and greenhouse experiments, the current consensus is that npq4 mutants grow more slowly in fluctuating light. However, our data show that this is not the case for several forms of fluctuating light conditions under otherwise identical controlled-climate room conditions.
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Affiliation(s)
- Christo Schiphorst
- Laboratory of Biophysics, Wageningen University & Research, Wageningen, Netherlands
| | - Cas Koeman
- Laboratory of Biophysics, Wageningen University & Research, Wageningen, Netherlands
| | - Ludovico Caracciolo
- Laboratory of Biophysics, Wageningen University & Research, Wageningen, Netherlands
| | - Koen Staring
- Laboratory of Biophysics, Wageningen University & Research, Wageningen, Netherlands
| | | | - Steven M. Driever
- Centre for Crop Systems Analysis, Wageningen University & Research, Wageningen, Netherlands
| | - Jeremy Harbinson
- Laboratory of Biophysics, Wageningen University & Research, Wageningen, Netherlands
| | - Emilie Wientjes
- Laboratory of Biophysics, Wageningen University & Research, Wageningen, Netherlands
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29
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Burgess AJ, Retkute R, Murchie EH. Photoacclimation and entrainment of photosynthesis by fluctuating light varies according to genotype in Arabidopsis thaliana. FRONTIERS IN PLANT SCIENCE 2023; 14:1116367. [PMID: 36968397 PMCID: PMC10034362 DOI: 10.3389/fpls.2023.1116367] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 12/05/2022] [Accepted: 02/10/2023] [Indexed: 06/18/2023]
Abstract
Acclimation of photosynthesis to light intensity (photoacclimation) takes days to achieve and so naturally fluctuating light presents a potential challenge where leaves may be exposed to light conditions that are beyond their window of acclimation. Experiments generally have focused on unchanging light with a relatively fixed combination of photosynthetic attributes to confer higher efficiency in those conditions. Here a controlled LED experiment and mathematical modelling was used to assess the acclimation potential of contrasting Arabidopsis thaliana genotypes following transfer to a controlled fluctuating light environment, designed to present frequencies and amplitudes more relevant to natural conditions. We hypothesize that acclimation of light harvesting, photosynthetic capacity and dark respiration are controlled independently. Two different ecotypes were selected, Wassilewskija-4 (Ws), Landsberg erecta (Ler) and a GPT2 knock out mutant on the Ws background (gpt2-), based on their differing abilities to undergo dynamic acclimation i.e. at the sub-cellular or chloroplastic scale. Results from gas exchange and chlorophyll content indicate that plants can independently regulate different components that could optimize photosynthesis in both high and low light; targeting light harvesting in low light and photosynthetic capacity in high light. Empirical modelling indicates that the pattern of 'entrainment' of photosynthetic capacity by past light history is genotype-specific. These data show flexibility of photoacclimation and variation useful for plant improvement.
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Affiliation(s)
| | - Renata Retkute
- Department of Plant Sciences, University of Cambridge, Cambridge, United Kingdom
| | - Erik H. Murchie
- School of Biosciences, University of Nottingham, Loughborough, United Kingdom
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30
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Ke X, Yoshida H, Hikosaka S, Goto E. Photosynthetic photon flux density affects fruit biomass radiation-use efficiency of dwarf tomatoes under LED light at the reproductive growth stage. FRONTIERS IN PLANT SCIENCE 2023; 14:1076423. [PMID: 36923121 PMCID: PMC10009779 DOI: 10.3389/fpls.2023.1076423] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 10/21/2022] [Accepted: 02/14/2023] [Indexed: 06/18/2023]
Abstract
This study aimed to analyze the effects of photosynthetic photon flux density (PPFD) on fruit biomass radiation-use efficiency (FBRUE) of the dwarf tomato cultivar 'Micro-Tom' and to determine the suitable PPFD for enhancing the FBRUE under LED light at the reproductive growth stage. We performed four PPFD treatments under white LED light: 200, 300, 500, and 700 μmol m-2 s-1. The results demonstrated that a higher PPFD led to higher fresh and dry weights of the plants and lowered specific leaf areas. FBRUE and radiation-use efficiency (RUE) were the highest under 300 μmol m-2 s-1. FBRUE decreased by 37.7% because RUE decreased by 25% and the fraction of dry mass portioned to fruits decreased by 16.9% when PPFD increased from 300 to 700 μmol m-2 s-1. Higher PPFD (500 and 700 μmol m-2 s-1) led to lower RUE owing to lower light absorptance, photosynthetic quantum yield, and photosynthetic capacity of the leaves. High source strength and low fruit sink strength at the late reproductive growth stage led to a low fraction of dry mass portioned to fruits. In conclusion, 300 µmol m-2 s-1 PPFD is recommended for 'Micro-Tom' cultivation to improve the FBRUE at the reproductive growth stage.
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Affiliation(s)
- Xinglin Ke
- Graduate School of Horticulture, Chiba University, Matsudo, Japan
| | - Hideo Yoshida
- Graduate School of Horticulture, Chiba University, Matsudo, Japan
| | - Shoko Hikosaka
- Graduate School of Horticulture, Chiba University, Matsudo, Japan
| | - Eiji Goto
- Graduate School of Horticulture, Chiba University, Matsudo, Japan
- Plant Molecular Research Center, Chiba University, Chiba, Japan
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31
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Xie H, Zhang J, Cheng J, Zhao S, Wen Q, Kong P, Zhao Y, Xiang X, Rong J. Field plus lab experiments help identify freezing tolerance and associated genes in subtropical evergreen broadleaf trees: A case study of Camellia oleifera. FRONTIERS IN PLANT SCIENCE 2023; 14:1113125. [PMID: 36909419 PMCID: PMC9994817 DOI: 10.3389/fpls.2023.1113125] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 12/01/2022] [Accepted: 02/06/2023] [Indexed: 06/18/2023]
Abstract
The molecular mechanisms of freezing tolerance are unresolved in the perennial trees that can survive under much lower freezing temperatures than annual herbs. Since natural conditions involve many factors and temperature usually cannot be controlled, field experiments alone cannot directly identify the effects of freezing stress. Lab experiments are insufficient for trees to complete cold acclimation and cannot reflect natural freezing-stress responses. In this study, a new method was proposed using field plus lab experiments to identify freezing tolerance and associated genes in subtropical evergreen broadleaf trees using Camellia oleifera as a case. Cultivated C. oleifera is the dominant woody oil crop in China. Wild C. oleifera at the high-elevation site in Lu Mountain could survive below -30°C, providing a valuable genetic resource for the breeding of freezing tolerance. In the field experiment, air temperature was monitored from autumn to winter on wild C. oleifera at the high-elevation site in Lu Mountain. Leave samples were taken from wild C. oleifera before cold acclimation, during cold acclimation and under freezing temperature. Leaf transcriptome analyses indicated that the gene functions and expression patterns were very different during cold acclimation and under freezing temperature. In the lab experiments, leaves samples from wild C. oleifera after cold acclimation were placed under -10°C in climate chambers. A cultivated C. oleifera variety "Ganwu 1" was used as a control. According to relative conductivity changes of leaves, wild C. oleifera showed more freezing-tolerant than cultivated C. oleifera. Leaf transcriptome analyses showed that the gene expression patterns were very different between wild and cultivated C. oleifera in the lab experiment. Combing transcriptome results in both of the field and lab experiments, the common genes associated with freezing-stress responses were identified. Key genes of the flg22, Ca2+ and gibberellin signal transduction pathways and the lignin biosynthesis pathway may be involved in the freezing-stress responses. Most of the genes had the highest expression levels under freezing temperature in the field experiment and showed higher expression in wild C. oleifera with stronger freezing tolerance in the lab experiment. Our study may help identify freezing tolerance and underlying molecular mechanisms in trees.
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Affiliation(s)
- Haoxing Xie
- Jiangxi Province Key Laboratory of Watershed Ecosystem Change and Biodiversity, Center for Watershed Ecology, Institute of Life Science and School of Life Sciences, Nanchang University, Nanchang, China
| | - Jian Zhang
- Jiangxi Province Key Laboratory of Watershed Ecosystem Change and Biodiversity, Center for Watershed Ecology, Institute of Life Science and School of Life Sciences, Nanchang University, Nanchang, China
| | - Junyong Cheng
- Hubei Provincial Engineering Research Center of Non-Timber Forest-Based Economy, Hubei Academy of Forestry, Wuhan, China
| | - Songzi Zhao
- Jiangxi Provincial Key Laboratory of Camellia Germplasm Conservation and Utilization, Jiangxi Academy of Forestry, Nanchang, China
| | - Qiang Wen
- Jiangxi Provincial Key Laboratory of Camellia Germplasm Conservation and Utilization, Jiangxi Academy of Forestry, Nanchang, China
| | - Ping Kong
- Jiangxi Ecological Meteorology Centre, Nanchang, China
| | - Yao Zhao
- Jiangxi Province Key Laboratory of Watershed Ecosystem Change and Biodiversity, Center for Watershed Ecology, Institute of Life Science and School of Life Sciences, Nanchang University, Nanchang, China
- Lushan Botanical Garden, Chinese Academy of Sciences, Lushan, China
| | - Xiaoguo Xiang
- Jiangxi Province Key Laboratory of Watershed Ecosystem Change and Biodiversity, Center for Watershed Ecology, Institute of Life Science and School of Life Sciences, Nanchang University, Nanchang, China
| | - Jun Rong
- Jiangxi Province Key Laboratory of Watershed Ecosystem Change and Biodiversity, Center for Watershed Ecology, Institute of Life Science and School of Life Sciences, Nanchang University, Nanchang, China
- Lushan Botanical Garden, Chinese Academy of Sciences, Lushan, China
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32
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Xu H, Ming B, Wang K, Xue J, Hou P, Li S, Xie R. The effects of photoperiod and temperature-related factors on maize leaf number and leaf positional distribution in the field. FRONTIERS IN PLANT SCIENCE 2023; 14:1006245. [PMID: 36844043 PMCID: PMC9950512 DOI: 10.3389/fpls.2023.1006245] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 07/29/2022] [Accepted: 01/23/2023] [Indexed: 06/18/2023]
Abstract
Quantifying the effects of various environmental conditions on maize leaf number is essential to understanding the environmental adaptations and population structure of maize plants and for enhancing maize productivity. In this study, seeds of three temperate-adapted maize cultivars, each belonging to different maturity classes, were sown on eight different dates. Sowing dates ranged from the middle of April to early July, which allowed us to cover a wide range of environmental conditions. Random forest regression and multiple regression models with variance partitioning analyses were used to assess the effects of environmental factors on the number of leaves and their distributions on maize primary stems. We demonstrated that the total leaf number (TLN) increased in the three cultivars in the following order: FK139 < JNK728 < ZD958, and variations in TLN for each cultivar were 1.5, 1.76, and 2.75 leaves, respectively. The variation in TLN was ascribed to changes in LB (leaf number below the primary ear), which were higher than variations in LA (leaf number above the primary ear). Variations in TLN and LB were mainly affected by the photoperiod during growth stages V7 to V11, and differences in TLN and LB in response to different photoperiods ranged from 1.34 to 2.95 leaves h-l. Variations in LA was mainly affected by temperature-related factors. Therefore, the results of this study enhanced our current understanding of key environmental conditions that affect maize leaf numbers, and provides scientific support for the benefits of adjusting sowing dates and selecting suitable cultivars to mitigate the effects of climate change on maize production.
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Affiliation(s)
| | | | | | | | | | - Shaokun Li
- *Correspondence: Shaokun Li, ; Ruizhi Xie,
| | - Ruizhi Xie
- *Correspondence: Shaokun Li, ; Ruizhi Xie,
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33
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Harfouche AL, Nakhle F, Harfouche AH, Sardella OG, Dart E, Jacobson D. A primer on artificial intelligence in plant digital phenomics: embarking on the data to insights journey. TRENDS IN PLANT SCIENCE 2023; 28:154-184. [PMID: 36167648 DOI: 10.1016/j.tplants.2022.08.021] [Citation(s) in RCA: 6] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/04/2022] [Revised: 08/22/2022] [Accepted: 08/25/2022] [Indexed: 06/16/2023]
Abstract
Artificial intelligence (AI) has emerged as a fundamental component of global agricultural research that is poised to impact on many aspects of plant science. In digital phenomics, AI is capable of learning intricate structure and patterns in large datasets. We provide a perspective and primer on AI applications to phenome research. We propose a novel human-centric explainable AI (X-AI) system architecture consisting of data architecture, technology infrastructure, and AI architecture design. We clarify the difference between post hoc models and 'interpretable by design' models. We include guidance for effectively using an interpretable by design model in phenomic analysis. We also provide directions to sources of tools and resources for making data analytics increasingly accessible. This primer is accompanied by an interactive online tutorial.
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Affiliation(s)
- Antoine L Harfouche
- Department for Innovation in Biological, Agro-Food, and Forest Systems, University of Tuscia, Viterbo, VT 01100, Italy.
| | - Farid Nakhle
- Department for Innovation in Biological, Agro-Food, and Forest Systems, University of Tuscia, Viterbo, VT 01100, Italy
| | - Antoine H Harfouche
- Unité de Formation et de Recherche en Sciences Économiques, Gestion, Mathématiques, et Informatique, Université Paris Nanterre, 92001 Nanterre, France
| | - Orlando G Sardella
- Department for Innovation in Biological, Agro-Food, and Forest Systems, University of Tuscia, Viterbo, VT 01100, Italy
| | - Eli Dart
- Energy Sciences Network (ESnet), Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA
| | - Daniel Jacobson
- Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN 37831, USA
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34
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Sommer SG, Han E, Li X, Rosenqvist E, Liu F. The Chlorophyll Fluorescence Parameter F v/F m Correlates with Loss of Grain Yield after Severe Drought in Three Wheat Genotypes Grown at Two CO 2 Concentrations. PLANTS (BASEL, SWITZERLAND) 2023; 12:436. [PMID: 36771521 PMCID: PMC9920701 DOI: 10.3390/plants12030436] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 12/15/2022] [Revised: 12/31/2022] [Accepted: 01/13/2023] [Indexed: 06/18/2023]
Abstract
Three genotypes of wheat grown at two CO2 concentrations were used in a drought experiment, where water was withheld from the pots at anthesis until stomatal conductance (gs) dropped below 10% of the control and photosynthesis (A) approached zero. The genotypes had different leaf area (Gladius < LM19 < LM62) and while photosynthesis and shoot growth were boosted by elevated CO2, the water use and drying rate were more determined by canopy size than by stomatal density and conductance. The genotypes responded differently regarding number of fertile tillers, seeds per spike and 1000 kernel weight and, surprisingly, the largest genotype (LM62) with high water use showed the lowest relative decrease in grain yield. The maximum photochemical efficiency of photosystem II (Fv/Fm) was only affected on the last day of the drought when the stomata were almost closed although some variation in A was still seen between the genotypes. A close correlation was found between Fv/Fm and % loss of grain yield. It indicates that the precise final physiological stress level measured by Fv/Fm at anthesis/early kernel filling could effectively predict percentage final yield loss, and LM62 was slightly less stressed than the other genotypes, due to only a small discrepancy in finalising the drying period. Therefore, Fv/Fm can be used as a proxy for estimating the yield performance of wheat after severe drought at anthesis.
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Affiliation(s)
- Søren Gjedde Sommer
- Department of Plant and Environmental Sciences, Crop Sciences, University of Copenhagen, Højbakkegaard Allé 13, DK-2630 Taastrup, Denmark
- Sino-Danish Center for Education and Research, 380 Huaibeizhuang, Beijing 101400, China
| | - Eusun Han
- Department of Plant and Environmental Sciences, Crop Sciences, University of Copenhagen, Højbakkegaard Allé 13, DK-2630 Taastrup, Denmark
- CSIRO Agriculture and Food, P.O. Box 1700, Canberra, ACT 2601, Australia
| | - Xiangnan Li
- Chinese Academy of Sciences, Northeast Institute of Geography and Agroecology, Changchun 130012, China
| | - Eva Rosenqvist
- Department of Plant and Environmental Sciences, Crop Sciences, University of Copenhagen, Højbakkegaard Allé 13, DK-2630 Taastrup, Denmark
| | - Fulai Liu
- Department of Plant and Environmental Sciences, Crop Sciences, University of Copenhagen, Højbakkegaard Allé 13, DK-2630 Taastrup, Denmark
- Sino-Danish Center for Education and Research, 380 Huaibeizhuang, Beijing 101400, China
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Andres SE, Emery NJ, Rymer PD, Powell JR. Soil chemistry and fungal communities are associated with dieback in an Endangered Australian shrub. PLANT AND SOIL 2023; 483:47-70. [PMID: 36211803 PMCID: PMC9525234 DOI: 10.1007/s11104-022-05724-7] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/12/2022] [Accepted: 09/23/2022] [Indexed: 05/08/2023]
Abstract
BACKGROUND AND AIMS Field surveys across known populations of the Endangered Persoonia hirsuta (Proteaceae) in 2019 suggested the soil environment may be associated with dieback in this species. To explore how characteristics of the soil environment (e.g., pathogens, nutrients, soil microbes) relate to dieback, a soil bioassay (Experiment 1) was conducted using field soils from two dieback effected P. hirsuta populations. Additionally, a nitrogen addition experiment (Experiment 2) was conducted to explore how the addition of soil nitrogen impacts dieback. METHODS The field soils were baited for pathogens, and soil physiochemical and microbial community characteristics were assessed and related to dieback among plants in the field and nursery-grown plants inoculated with the same field soils. Roots from inoculated plants were harvested to confirm the presence of soil pathogens and root-associated endophytes. Using these isolates, a dual culture antagonism assay was performed to examine competition among these microbes and identify candidate pathogens or pathogen antagonists. RESULTS Dieback among plants in the field and Experiment 1 was associated with soil physiochemical properties (nitrogen and potassium), and soil microbes were identified as significant indicators of healthy and dieback-affected plants. Plants in Experiment 2 exhibited greater dieback when treated with elevated nitrogen. Additionally, post-harvest culturing identified fungi and other soil pathogens, some of which exhibited antagonistic behavior. CONCLUSION This study identified candidate fungi and soil physiochemical properties associated with observed dieback and dieback resistance in an Endangered shrub and provides groundwork for further exploring what drives dieback and how it can be managed to promote the conservation of wild populations. SUPPLEMENTARY INFORMATION The online version contains supplementary material available at 10.1007/s11104-022-05724-7.
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Affiliation(s)
- Samantha E. Andres
- Hawkesbury Institute for the Environment, Richmond, New South Wales 2753 Australia
| | - Nathan J. Emery
- The Australian PlantBank, Australian Botanic Garden, Australian Institute of Botanical Science, Mount Annan, New South Wales 2567 Australia
| | - Paul D. Rymer
- Hawkesbury Institute for the Environment, Richmond, New South Wales 2753 Australia
| | - Jeff R. Powell
- Hawkesbury Institute for the Environment, Richmond, New South Wales 2753 Australia
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36
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Wang T, Zheng L, Xiong D, Wang F, Man J, Deng N, Cui K, Huang J, Peng S, Ling X. Stomatal Ratio Showing No Response to Light Intensity in Oryza. PLANTS (BASEL, SWITZERLAND) 2022; 12:66. [PMID: 36616195 PMCID: PMC9823486 DOI: 10.3390/plants12010066] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 11/16/2022] [Revised: 12/09/2022] [Accepted: 12/20/2022] [Indexed: 06/17/2023]
Abstract
Stomata control carbon and water exchange between the leaves and the ambient. However, the plasticity responses of stomatal traits to growth conditions are still unclear, especially for monocot leaves. The current study investigated the leaf anatomical traits, stomatal morphological traits on both adaxial and abaxial leaf surfaces, and photosynthetic traits of Oryza leaves developed in two different growth conditions. Substantial variation exists across the Oryza species in leaf anatomy, stomatal traits, photosynthetic rate, and stomatal conductance. The abaxial stomatal density was higher than the adaxial stomatal density in all the species, and the stomatal ratios ranged from 0.35 to 0.46 across species in two growth environments. However, no difference in the stomatal ratio was observed between plants in the growth chamber and outdoors for a given species. Photosynthetic capacity, stomatal conductance, leaf width, major vein thickness, minor vein thickness, inter-vein distance, and stomatal pore width values for leaves grown outdoors were higher than those for plants grown in the growth chamber. Our results indicate that a broad set of leaf anatomical, stomatal, and photosynthetic traits of Oryza tend to shift together during plasticity to diverse growing conditions, but the previously projected sensitive trait, stomatal ratio, does not shape growth conditions.
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37
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Dowd TG, Li M, Bagnall GC, Johnston A, Topp CN. Root system architecture and environmental flux analysis in mature crops using 3D root mesocosms. FRONTIERS IN PLANT SCIENCE 2022; 13:1041404. [PMID: 36589101 PMCID: PMC9800027 DOI: 10.3389/fpls.2022.1041404] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 09/10/2022] [Accepted: 11/29/2022] [Indexed: 06/17/2023]
Abstract
Current methods of root sampling typically only obtain small or incomplete sections of root systems and do not capture their true complexity. To facilitate the visualization and analysis of full-sized plant root systems in 3-dimensions, we developed customized mesocosm growth containers. While highly scalable, the design presented here uses an internal volume of 45 ft3 (1.27 m3), suitable for large crop and bioenergy grass root systems to grow largely unconstrained. Furthermore, they allow for the excavation and preservation of 3-dimensional root system architecture (RSA), and facilitate the collection of time-resolved subterranean environmental data. Sensor arrays monitoring matric potential, temperature and CO2 levels are buried in a grid formation at various depths to assess environmental fluxes at regular intervals. Methods of 3D data visualization of fluxes were developed to allow for comparison with root system architectural traits. Following harvest, the recovered root system can be digitally reconstructed in 3D through photogrammetry, which is an inexpensive method requiring only an appropriate studio space and a digital camera. We developed a pipeline to extract features from the 3D point clouds, or from derived skeletons that include point cloud voxel number as a proxy for biomass, total root system length, volume, depth, convex hull volume and solidity as a function of depth. Ground-truthing these features with biomass measurements from manually dissected root systems showed a high correlation. We evaluated switchgrass, maize, and sorghum root systems to highlight the capability for species wide comparisons. We focused on two switchgrass ecotypes, upland (VS16) and lowland (WBC3), in identical environments to demonstrate widely different root system architectures that may be indicative of core differences in their rhizoeconomic foraging strategies. Finally, we imposed a strong physiological water stress and manipulated the growth medium to demonstrate whole root system plasticity in response to environmental stimuli. Hence, these new "3D Root Mesocosms" and accompanying computational analysis provides a new paradigm for study of mature crop systems and the environmental fluxes that shape them.
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Bui KT, Naruse T, Yoshida H, Toda Y, Omori Y, Tsuda M, Kaga A, Yamasaki Y, Tsujimoto H, Ichihashi Y, Hirai M, Fujiwara T, Iwata H, Matsuoka M, Takahashi H, Nakazono M. Effects of irrigation on root growth and development of soybean: A 3-year sandy field experiment. FRONTIERS IN PLANT SCIENCE 2022; 13:1047563. [PMID: 36589062 PMCID: PMC9795411 DOI: 10.3389/fpls.2022.1047563] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 09/18/2022] [Accepted: 11/21/2022] [Indexed: 06/17/2023]
Abstract
Increasing the water use efficiency of crops is an important agricultural goal closely related to the root system -the primary plant organ for water and nutrient acquisition. In an attempt to evaluate the response of root growth and development of soybean to water supply levels, 200 genotypes were grown in a sandy field for 3 years under irrigated and non-irrigated conditions, and 14 root traits together with shoot fresh weight and plant height were investigated. Three-way ANOVA revealed a significant effect of treatments and years on growth of plants, accounting for more than 80% of the total variability. The response of roots to irrigation was consistent over the years as most root traits were improved by irrigation. However, the actual values varied between years because the growth of plants was largely affected by the field microclimatic conditions (i.e., temperature, sunshine duration, and precipitation). Therefore, the best linear unbiased prediction values for each trait were calculated using the original data. Principal component analysis showed that most traits contributed to principal component (PC) 1, whereas average diameter, the ratio of thin and medium thickness root length to total root length contributed to PC2. Subsequently, we focused on selecting genotypes that exhibited significant improvements in root traits under irrigation than under non-irrigated conditions using the increment (I-index) and relative increment (RI-index) indices calculated for all traits. Finally, we screened for genotypes with high stability and root growth over the 3 years using the multi-trait selection index (MTSI).Six genotypes namely, GmJMC130, GmWMC178, GmJMC092, GmJMC068, GmWMC075, and GmJMC081 from the top 10% of genotypes scoring MTSI less than the selection threshold of 7.04 and 4.11 under irrigated and non-irrigated conditions, respectively, were selected. The selected genotypes have great potential for breeding cultivars with improved water usage abilities, meeting the goal of water-saving agriculture.
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Affiliation(s)
- Khuynh The Bui
- Graduate School of Bio-Agricultural Sciences, Nagoya University, Nagoya, Japan
- Faculty of Agronomy, Vietnam National University of Agriculture, Hanoi, Vietnam
| | - Toshiya Naruse
- Graduate School of Bio-Agricultural Sciences, Nagoya University, Nagoya, Japan
| | - Hideki Yoshida
- Bioscience and Biotechnology Center, Nagoya University, Nagoya, Japan
| | - Yusuke Toda
- Graduate School of Agricultural and Life Sciences, The University of Tokyo, Tokyo, Japan
- Institute for Agro-Environmental Sciences, National Agriculture and Food Research Organization (NARO), Ibaraki, Japan
| | - Yoshihiro Omori
- Graduate School of Agricultural and Life Sciences, The University of Tokyo, Tokyo, Japan
| | - Mai Tsuda
- Tsukuba-Plant Innovation Research Center (T-PIRC), University of Tsukuba, Tsukuba, Japan
| | - Akito Kaga
- Institute of Crop Science, National Agriculture and Food Research Organization (NARO), Tsukuba, Japan
| | - Yuji Yamasaki
- Arid Land Research Center, Tottori University, Tottori, Japan
| | | | | | - Masami Hirai
- Graduate School of Bio-Agricultural Sciences, Nagoya University, Nagoya, Japan
- RIKEN Center for Sustainable Resource Science, Tsukuba, Japan
| | - Toru Fujiwara
- Graduate School of Agricultural and Life Sciences, The University of Tokyo, Tokyo, Japan
| | - Hiroyoshi Iwata
- Graduate School of Agricultural and Life Sciences, The University of Tokyo, Tokyo, Japan
| | - Makoto Matsuoka
- Bioscience and Biotechnology Center, Nagoya University, Nagoya, Japan
| | - Hirokazu Takahashi
- Graduate School of Bio-Agricultural Sciences, Nagoya University, Nagoya, Japan
| | - Mikio Nakazono
- Graduate School of Bio-Agricultural Sciences, Nagoya University, Nagoya, Japan
- School of Plant Biology, The University of Western Australia, 35 Stirling Highway, Crawley, WA, Australia
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Leveraging plant physiological dynamics using physical reservoir computing. Sci Rep 2022; 12:12594. [PMID: 35869238 PMCID: PMC9307625 DOI: 10.1038/s41598-022-16874-0] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/18/2022] [Accepted: 07/18/2022] [Indexed: 11/10/2022] Open
Abstract
Plants are complex organisms subject to variable environmental conditions, which influence their physiology and phenotype dynamically. We propose to interpret plants as reservoirs in physical reservoir computing. The physical reservoir computing paradigm originates from computer science; instead of relying on Boolean circuits to perform computations, any substrate that exhibits complex non-linear and temporal dynamics can serve as a computing element. Here, we present the first application of physical reservoir computing with plants. In addition to investigating classical benchmark tasks, we show that Fragaria × ananassa (strawberry) plants can solve environmental and eco-physiological tasks using only eight leaf thickness sensors. Although the results indicate that plants are not suitable for general-purpose computation but are well-suited for eco-physiological tasks such as photosynthetic rate and transpiration rate. Having the means to investigate the information processing by plants improves quantification and understanding of integrative plant responses to dynamic changes in their environment. This first demonstration of physical reservoir computing with plants is key for transitioning towards a holistic view of phenotyping and early stress detection in precision agriculture applications since physical reservoir computing enables us to analyse plant responses in a general way: environmental changes are processed by plants to optimise their phenotype.
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40
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Lauterberg M, Saranga Y, Deblieck M, Klukas C, Krugman T, Perovic D, Ordon F, Graner A, Neumann K. Precision phenotyping across the life cycle to validate and decipher drought-adaptive QTLs of wild emmer wheat ( Triticum turgidum ssp. dicoccoides) introduced into elite wheat varieties. FRONTIERS IN PLANT SCIENCE 2022; 13:965287. [PMID: 36311121 PMCID: PMC9598872 DOI: 10.3389/fpls.2022.965287] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 06/09/2022] [Accepted: 08/29/2022] [Indexed: 06/16/2023]
Abstract
Drought events or the combination of drought and heat conditions are expected to become more frequent due to global warming, and wheat yields may fall below their long-term average. One way to increase climate-resilience of modern high-yielding varieties is by their genetic improvement with beneficial alleles from crop wild relatives. In the present study, the effect of two beneficial QTLs introgressed from wild emmer wheat and incorporated in the three wheat varieties BarNir, Zahir and Uzan was studied under well-watered conditions and under drought stress using non-destructive High-throughput Phenotyping (HTP) throughout the life cycle in a single pot-experiment. Plants were daily imaged with RGB top and side view cameras and watered automatically. Further, at two time points, the quantum yield of photosystem II was measured with a top view FluorCam. The QTL carrying near isogenic lines (NILs) were compared with their corresponding parents by t-test for all non-invasively obtained traits and for the manually determined agronomic and yield parameters. Data quality of phenotypic traits (repeatability) in the controlled HTP experiment was above 85% throughout the life cycle and at maturity. Drought stress had a strong effect on growth in all wheat genotypes causing biomass reduction from 2% up to 70% at early and late points in the drought period, respectively. At maturity, the drought caused 47-55% decreases in yield-related traits grain weight, straw weight and total biomass and reduced TKW by 10%, while water use efficiency (WUE) increased under drought by 29%. The yield-enhancing effect of the introgressed QTLs under drought conditions that were previously demonstrated under field/screenhouse conditions in Israel, could be mostly confirmed in a greenhouse pot experiment using HTP. Daily precision phenotyping enabled to decipher the mode of action of the QTLs in the different genetic backgrounds throughout the entire wheat life cycle. Daily phenotyping allowed a precise determination of the timing and size of the QTLs effect (s) and further yielded information about which image-derived traits are informative at which developmental stage of wheat during the entire life cycle. Maximum height and estimated biovolume were reached about a week after heading, so experiments that only aim at exploring these traits would not need a longer observation period. To obtain information on different onset and progress of senescence, the CVa curves represented best the ongoing senescence of plants. The QTL on 7A in the BarNir background was found to improve yield under drought by increased biomass growth, a higher photosynthetic performance, a higher WUE and a "stay green effect."
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Affiliation(s)
- Madita Lauterberg
- Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), Gatersleben, Germany
| | - Yehoshua Saranga
- The Robert H. Smith Institute of Plant Sciences and Genetics in Agriculture, The Hebrew University of Jerusalem, Rehovot, Israel
| | - Mathieu Deblieck
- Institute for Resistance Research and Stress Tolerance, Julius Kühn-Institute, Quedlinburg, Germany
| | - Christian Klukas
- Digitalization in Research and Development (ROM), BASF SE, Ludwigshafen am Rhein, Germany
| | - Tamar Krugman
- Institute of Evolution, University of Haifa, Haifa, Israel
| | - Dragan Perovic
- Institute for Resistance Research and Stress Tolerance, Julius Kühn-Institute, Quedlinburg, Germany
| | - Frank Ordon
- Institute for Resistance Research and Stress Tolerance, Julius Kühn-Institute, Quedlinburg, Germany
| | - Andreas Graner
- Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), Gatersleben, Germany
| | - Kerstin Neumann
- Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), Gatersleben, Germany
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41
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Wilschut RA, De Long JR, Geisen S, Hannula SE, Quist CW, Snoek B, Steinauer K, Wubs ERJ, Yang Q, Thakur MP. Combined effects of warming and drought on plant biomass depend on plant woodiness and community type: a meta-analysis. Proc Biol Sci 2022; 289:20221178. [PMID: 36196543 PMCID: PMC9533002 DOI: 10.1098/rspb.2022.1178] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022] Open
Abstract
Global warming and precipitation extremes (drought or increased precipitation) strongly affect plant primary production and thereby terrestrial ecosystem functioning. Recent syntheses show that combined effects of warming and precipitation extremes on plant biomass are generally additive, while individual experiments often show interactive effects, indicating that combined effects are more negative or positive than expected based on the effects of single factors. Here, we examined whether variation in biomass responses to single and combined effects of warming and precipitation extremes can be explained by plant growth form and community type. We performed a meta-analysis of 37 studies, which experimentally crossed warming and precipitation treatments, to test whether biomass responses to combined effects of warming and precipitation extremes depended on plant woodiness and community type (monocultures versus mixtures). Our results confirmed that the effects of warming and precipitation extremes were overall additive. However, combined effects of warming and drought on above- and belowground biomass were less negative in woody- than in herbaceous plant systems and more negative in plant mixtures than in monocultures. We further show that drought effects on plant biomass were more negative in greenhouse- than in field studies, suggesting that greenhouse experiments may overstate drought effects in the field. Our results highlight the importance of plant system characteristics to better understand plant responses to climate change.
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Affiliation(s)
- Rutger A Wilschut
- Ecology, Department of Biology, University of Konstanz, Universitätsstraße 10, Konstanz 78464, Germany.,Department of Terrestrial Ecology, Netherlands Institute of Ecology (NIOO-KNAW), Wageningen 6708 PB, The Netherlands
| | - Jonathan R De Long
- Department of Terrestrial Ecology, Netherlands Institute of Ecology (NIOO-KNAW), Wageningen 6708 PB, The Netherlands.,Louis Bolk Institute, Kosterijland 3-5, Bunnik 3981 AJ, The Netherlands
| | - Stefan Geisen
- Department of Terrestrial Ecology, Netherlands Institute of Ecology (NIOO-KNAW), Wageningen 6708 PB, The Netherlands.,Laboratory of Nematology, Wageningen University, Wageningen 6708 PB, The Netherlands
| | - S Emilia Hannula
- Department of Terrestrial Ecology, Netherlands Institute of Ecology (NIOO-KNAW), Wageningen 6708 PB, The Netherlands.,Institute of Environmental Sciences, Leiden University, Einsteinweg 2, Leiden 2333CC, The Netherlands
| | - Casper W Quist
- Department of Terrestrial Ecology, Netherlands Institute of Ecology (NIOO-KNAW), Wageningen 6708 PB, The Netherlands.,Biosystematics Group, Wageningen University, Wageningen 6708 PB, The Netherlands
| | - Basten Snoek
- Department of Terrestrial Ecology, Netherlands Institute of Ecology (NIOO-KNAW), Wageningen 6708 PB, The Netherlands.,Theoretical Biology and Bioinformatics, Utrecht University, Padualaan 8, Utrecht 3584 CH, The Netherlands
| | - Katja Steinauer
- Department of Terrestrial Ecology, Netherlands Institute of Ecology (NIOO-KNAW), Wageningen 6708 PB, The Netherlands
| | - E R Jasper Wubs
- Department of Terrestrial Ecology, Netherlands Institute of Ecology (NIOO-KNAW), Wageningen 6708 PB, The Netherlands.,Sustainable Agroecosystems Group, Department of Environmental Systems Science, ETH Zürich, Universitätstrasse 2, Zürich 8092, Switzerland
| | - Qiang Yang
- Department of Terrestrial Ecology, Netherlands Institute of Ecology (NIOO-KNAW), Wageningen 6708 PB, The Netherlands.,State Key Laboratory of Grassland Agro-Ecosystems, College of Ecology, Lanzhou University, Lanzhou, Gansu 730000, People's Republic of China
| | - Madhav P Thakur
- Department of Terrestrial Ecology, Netherlands Institute of Ecology (NIOO-KNAW), Wageningen 6708 PB, The Netherlands.,Institute of Ecology and Evolution and Oeschger Centre for Climate Change Research, University of Bern, Bern 3012, Switzerland
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Zepeda AC, Heuvelink E, Marcelis LFM. Non-structural carbohydrate dynamics and growth in tomato plants grown at fluctuating light and temperature. FRONTIERS IN PLANT SCIENCE 2022; 13:968881. [PMID: 36262659 PMCID: PMC9574331 DOI: 10.3389/fpls.2022.968881] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 06/14/2022] [Accepted: 08/19/2022] [Indexed: 06/16/2023]
Abstract
Fluctuations in light intensity and temperature lead to periods of asynchrony between carbon (C) supply by photosynthesis and C demand by the plant organs. Storage and remobilization of non-structural carbohydrates (NSC) are important processes that allow plants to buffer these fluctuations. We aimed to test the hypothesis that C storage and remobilization can buffer the effects of temperature and light fluctuations on growth of tomato plants. Tomato plants were grown at temperature amplitudes of 3 or 10°C (deviation around the mean of 22°C) combined with integration periods (IP) of 2 or 10 days. Temperature and light were applied in Phase (high temperature simultaneously with high light intensity, (400 μmol m-2 s-1), low temperature simultaneously with low light intensity (200 μmol m-2 s-1) or in Antiphase (high temperature with low light intensity, low temperature with high light intensity). A control treatment with constant temperature (22°C) and a constant light intensity (300 μmol m-2 s-1) was also applied. After 20 days all treatments had received the same temperature and light integral. Differences in final structural dry weight were relatively small, while NSC concentrations were highly dynamic and followed changes of light and temperature (a positive correlation with decreasing temperature and increasing light intensity). High temperature and low light intensity lead to depletion of the NSC pool, but NSC level never dropped below 8% of the plant weight and this fraction was not mobilizable. Our results suggest that growing plants under fluctuating conditions do not necessarily have detrimental effects on plant growth and may improve biomass production in plants. These findings highlight the importance in the NSC pool dynamics to buffer fluctuations of light and temperature on plant structural growth.
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43
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Clément C, Schneider HM, Dresbøll DB, Lynch JP, Thorup-Kristensen K. Root and xylem anatomy varies with root length, root order, soil depth and environment in intermediate wheatgrass (Kernza®) and alfalfa. ANNALS OF BOTANY 2022; 130:367-382. [PMID: 35468194 PMCID: PMC9486898 DOI: 10.1093/aob/mcac058] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/27/2022] [Accepted: 04/25/2022] [Indexed: 06/08/2023]
Abstract
BACKGROUND AND AIMS Deep roots (i.e. >1 m depth) are important for crops to access water when the topsoil is dry. Root anatomy and hydraulic conductance play important roles in the uptake of soil water, particularly water located deep in the soil. We investigated whether root and xylem anatomy vary as a function of root type, order and length, or with soil depth in roots of two deep-rooted perennial crops: intermediate wheatgrass [Thinopyrum intermedium (Kernza®)] and alfalfa (Medicago sativa). We linked the expression of these anatomical traits to the plants' capacity to take up water from deep soil layers. METHODS Using laser ablation tomography, we compared the roots of the two crops for cortical area, number and size of metaxylem vessels, and their estimated root axial hydraulic conductance (ERAHCe). The deepest roots investigated were located at soil depths of 2.25 and at 3.5 m in the field and in rhizoboxes, respectively. Anatomical differences were characterized along 1-m-long individual roots, among root types and orders, as well as between environmental conditions. KEY RESULTS For both crops, a decrease in the number and diameter, or both, of metaxylem vessels along individual root segments and with soil depth in the field resulted in a decrease in ERAHCe. Alfalfa, with a greater number of metaxylem vessels per root throughout the soil profile and, on average, a 4-fold greater ERAHCe, took up more water from the deep soil layers than intermediate wheatgrass. Root anatomical traits were significantly different across root types, classes and growth conditions. CONCLUSIONS Root anatomical traits are important tools for the selection of crops with enhanced exploitation of deep soil water. The development and breeding of perennial crops for improved subsoil exploitation will be aided by greater understanding of root phenotypes linked to deep root growth and activity.
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Affiliation(s)
| | - Hannah M Schneider
- Department of Plant Science, Pennsylvania State University, University Park, PA 16802, USA
| | - Dorte Bodin Dresbøll
- Department of Plant and Environmental Science, University of Copenhagen, 1871 Frederiksberg, Denmark
| | - Jonathan P Lynch
- Department of Plant Science, Pennsylvania State University, University Park, PA 16802, USA
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ALI MN, SERÇE S. Vitamin C and fruit quality consensus in breeding elite European strawberry under multiple interactions of environment. Mol Biol Rep 2022; 49:11573-11586. [DOI: 10.1007/s11033-022-07849-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/23/2022] [Revised: 07/14/2022] [Accepted: 08/08/2022] [Indexed: 10/14/2022]
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45
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Birt HWG, Pattison AB, Skarshewski A, Daniells J, Raghavendra A, Dennis PG. The core bacterial microbiome of banana (Musa spp.). ENVIRONMENTAL MICROBIOME 2022; 17:46. [PMID: 36076285 PMCID: PMC9461194 DOI: 10.1186/s40793-022-00442-0] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/13/2022] [Accepted: 08/15/2022] [Indexed: 06/15/2023]
Abstract
BACKGROUND Bananas (Musa spp.) are a globally significant crop and are severely afflicted by diseases for which there are no effective chemical controls. Banana microbiomes may provide novel solutions to these constraints but are difficult to manage due to their high diversity and variability between locations. Hence 'common core' taxa, which are a subset of the microbiome that frequent all, or most, individuals of a host species, represent logical targets for the development of microbiome management approaches. Here, we first performed a pot experiment to characterise the effects of two factors that are likely to differ between farms (viz. edaphic conditions and host genotype) on bacterial diversity in bulk soil and seven plant compartments. From this experiment, we created shortlisted core 'candidates' that were then refined using a survey of 52 field-grown Musa spp. We confirmed the importance of the core through network analysis and by comparing the sequences of our core taxa with those reported in 22 previous studies. RESULTS Diversity was found to differ between plant compartments and soils, but not genotypes. Therefore, we identified populations that were frequent across most plants irrespective of the soil in which they were grown. This led to the selection of 36 'common core' bacteria, that represented 65-95% of the dominant taxa in field-grown plants and were identified as highly interconnected 'hubs' using network analysis - a characteristic shown to be indicative of microbes that influence host fitness in studies of other plants. Lastly, we demonstrated that the core taxa are closely related to banana-associated bacteria observed on five other continents. CONCLUSIONS Our study provides a robust list of common core bacterial taxa for Musa spp. Further research may now focus on how changes in the frequencies and activities of these most persistent taxa influence host fitness. Notably, for several of our core taxa, highly similar populations have already been isolated in previous studies and may be amenable to such experimentation. This contribution should help to accelerate the development of effective Musa spp. microbiome management practices.
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Affiliation(s)
- Henry W. G. Birt
- School of Earth and Environmental Sciences, The University of Queensland, Brisbane, QLD 4072 Australia
| | - Anthony B. Pattison
- School of Earth and Environmental Sciences, The University of Queensland, Brisbane, QLD 4072 Australia
- Department of Agriculture and Fisheries, Centre for Wet Tropics Agriculture, 24 Experimental Station Road, South Johnstone, QLD 4859 Australia
| | - Adam Skarshewski
- School of Earth and Environmental Sciences, The University of Queensland, Brisbane, QLD 4072 Australia
| | - Jeff Daniells
- Department of Agriculture and Fisheries, Centre for Wet Tropics Agriculture, 24 Experimental Station Road, South Johnstone, QLD 4859 Australia
| | - Anil Raghavendra
- School of Earth and Environmental Sciences, The University of Queensland, Brisbane, QLD 4072 Australia
| | - Paul G. Dennis
- School of Earth and Environmental Sciences, The University of Queensland, Brisbane, QLD 4072 Australia
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46
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Aphalo PJ, Sadras VO. Explaining pre-emptive acclimation by linking information to plant phenotype. JOURNAL OF EXPERIMENTAL BOTANY 2022; 73:5213-5234. [PMID: 34915559 PMCID: PMC9440433 DOI: 10.1093/jxb/erab537] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 12/05/2018] [Accepted: 12/06/2021] [Indexed: 06/14/2023]
Abstract
We review mechanisms for pre-emptive acclimation in plants and propose a conceptual model linking developmental and evolutionary ecology with the acquisition of information through sensing of cues and signals. The idea is that plants acquire much of the information in the environment not from individual cues and signals but instead from their joint multivariate properties such as correlations. If molecular signalling has evolved to extract such information, the joint multivariate properties of the environment must be encoded in the genome, epigenome, and phenome. We contend that multivariate complexity explains why extrapolating from experiments done in artificial contexts into natural or agricultural systems almost never works for characters under complex environmental regulation: biased relationships among the state variables in both time and space create a mismatch between the evolutionary history reflected in the genotype and the artificial growing conditions in which the phenotype is expressed. Our model can generate testable hypotheses bridging levels of organization. We describe the model and its theoretical bases, and discuss its implications. We illustrate the hypotheses that can be derived from the model in two cases of pre-emptive acclimation based on correlations in the environment: the shade avoidance response and acclimation to drought.
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Affiliation(s)
| | - Victor O Sadras
- South Australian Research and Development Institute, and School of Agriculture, Food and Wine, The University of Adelaide, Australia
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47
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Matesanz S, Ramos-Muñoz M, Rubio Teso ML, Iriondo JM. Effects of parental drought on offspring fitness vary among populations of a crop wild relative. Proc Biol Sci 2022; 289:20220065. [PMID: 36000234 PMCID: PMC9399706 DOI: 10.1098/rspb.2022.0065] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/12/2022] [Accepted: 07/26/2022] [Indexed: 01/17/2023] Open
Abstract
Transgenerational plasticity is a form of non-genetic inheritance that can reduce or enhance offspring fitness depending on parental stress. Yet, the adaptive value of such parental environmental effects and whether their expression varies among populations remain largely unknown. We used self-fertilized lines from climatically distinct populations of the crop wild relative Lupinus angustifolius. In the parental generation, full-siblings were grown in two contrasting watering environments. Then, to robustly separate the within-generation and transgenerational response to drought, we reciprocally assigned the offspring of parents to the same experimental treatments. We measured key functional traits and assessed lifetime reproductive fitness. Offspring of drought-stressed parents produced less reproductive biomass, but a similar number of lighter seeds, in dry soil compared to offspring of genetically identical, well-watered parents, an effect not mediated by differences in seed provisioning. Importantly, while the offspring of parents grown in the favourable environment responded to drought by slightly increasing individual seed mass, the pattern of plasticity of the offspring of drought-grown parents showed the opposite direction, and the negative effects of parental drought on seed mass were more pronounced in populations from cooler and moist habitats. Overall, our results show that parental effects may override immediate adaptive responses to drought and provide evidence of population-level variation in the expression of transgenerational plasticity.
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Affiliation(s)
- Silvia Matesanz
- Área de Biodiversidad y Conservación, Universidad Rey Juan Carlos, C/Tulipán s/n, 28933 Móstoles, Madrid, Spain
| | - Marina Ramos-Muñoz
- Área de Biodiversidad y Conservación, Universidad Rey Juan Carlos, C/Tulipán s/n, 28933 Móstoles, Madrid, Spain
| | - María Luisa Rubio Teso
- Área de Biodiversidad y Conservación, Universidad Rey Juan Carlos, C/Tulipán s/n, 28933 Móstoles, Madrid, Spain
| | - José María Iriondo
- Área de Biodiversidad y Conservación, Universidad Rey Juan Carlos, C/Tulipán s/n, 28933 Móstoles, Madrid, Spain
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48
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Liu L, Hao L, Zhang Y, Zhou H, Ma B, Cheng Y, Tian Y, Chang Z, Zheng Y. The CO 2 fertilization effect on leaf photosynthesis of maize ( Zea mays L.) depends on growth temperatures with changes in leaf anatomy and soluble sugars. FRONTIERS IN PLANT SCIENCE 2022; 13:890928. [PMID: 36061776 PMCID: PMC9437643 DOI: 10.3389/fpls.2022.890928] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 03/07/2022] [Accepted: 07/26/2022] [Indexed: 06/15/2023]
Abstract
Understanding the potential mechanisms and processes of leaf photosynthesis in response to elevated CO2 concentration ([CO2]) and temperature is critical for estimating the impacts of climatic change on the growth and yield in crops such as maize (Zea mays L.), which is a widely cultivated C4 crop all over the world. We examined the combined effect of elevated [CO2] and temperature on plant growth, leaf photosynthesis, stomatal traits, and biochemical compositions of maize with six environmental growth chambers controlling two CO2 levels (400 and 800 μmol mol-1) and three temperature regimes (25/19°C, 31/25°C, and 37/31°C). We found that leaf photosynthesis was significantly enhanced by increasing growth temperature from 25/19°C to 31/25°C independent of [CO2]. However, leaf photosynthesis drastically declined when the growth temperature was continually increased to 37/31°C at both ambient CO2 concentration (400 μmol mol-1, a[CO2]) and elevated CO2 concentration (800 μmol mol-1, e[CO2]). Meanwhile, we also found strong CO2 fertilization effect on maize plants grown at the highest temperature (37/31°C), as evidenced by the higher leaf photosynthesis at e[CO2] than that at a[CO2], although leaf photosynthesis was similar between a[CO2] and e[CO2] under the other two temperature regimes of 25/19°C and 31/25°C. Furthermore, we also found that e[CO2] resulted in an increase in leaf soluble sugar, which was positively related with leaf photosynthesis under the high temperature regime of 37/31°C (R 2 = 0.77). In addition, our results showed that e[CO2] substantially decreased leaf transpiration rates of maize plants, which might be partially attributed to the reduced stomatal openness as demonstrated by the declined stomatal width and stomatal area. These results suggest that the CO2 fertilization effect on plant growth and leaf photosynthesis of maize depends on growth temperatures through changing stomatal traits, leaf anatomy, and soluble sugar contents.
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Affiliation(s)
- Liang Liu
- School of Water Conservancy and Hydropower, Hebei University of Engineering, Handan, China
| | - Lihua Hao
- School of Water Conservancy and Hydropower, Hebei University of Engineering, Handan, China
| | - Yunxin Zhang
- School of Water Conservancy and Hydropower, Hebei University of Engineering, Handan, China
| | - Haoran Zhou
- Department of Ecology and Evolutionary Biology, Yale University, New Haven, CT, United States
| | - Baoguo Ma
- School of Water Conservancy and Hydropower, Hebei University of Engineering, Handan, China
| | - Yao Cheng
- School of Water Conservancy and Hydropower, Hebei University of Engineering, Handan, China
| | - Yinshuai Tian
- School of Landscape and Ecological Engineering, Hebei University of Engineering, Handan, China
| | - Zhijie Chang
- School of Water Conservancy and Hydropower, Hebei University of Engineering, Handan, China
| | - Yunpu Zheng
- School of Water Conservancy and Hydropower, Hebei University of Engineering, Handan, China
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49
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Hashida Y, Tezuka A, Nomura Y, Kamitani M, Kashima M, Kurita Y, Nagano AJ. Fillable and unfillable gaps in plant transcriptome under field and controlled environments. PLANT, CELL & ENVIRONMENT 2022; 45:2410-2427. [PMID: 35610174 PMCID: PMC9544781 DOI: 10.1111/pce.14367] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 11/17/2021] [Revised: 03/27/2022] [Accepted: 05/16/2022] [Indexed: 06/15/2023]
Abstract
The differences between plants grown in field and in controlled environments have long been recognized. However, few studies have addressed the underlying molecular mechanisms. To evaluate plant responses to fluctuating environments using laboratory equipment, we developed SmartGC, a high-performance growth chamber that reproduces the fluctuating irradiance, temperature and humidity of field environments. We analysed massive transcriptome data of rice plants grown under field and SmartGC conditions to clarify the differences in plant responses to field and controlled environments. Rice transcriptome dynamics in SmartGC mimicked those in the field, particularly during the morning and evening but those in conventional growth chamber conditions did not. Further analysis revealed that fluctuation of irradiance affects transcriptome dynamics in the morning and evening, while fluctuation of temperature affects transcriptome dynamics only in the morning. We found upregulation of genes related to biotic and abiotic stress, and their expression was affected by environmental factors that cannot be mimicked by SmartGC. Our results reveal fillable and unfillable gaps in the transcriptomes of rice grown in field and controlled environments and can accelerate the understanding of plant responses to field environments for both basic biology and agricultural applications.
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Affiliation(s)
- Yoichi Hashida
- Faculty of AgricultureTakasaki University of Health and WelfareTakasakiGunmaJapan
| | - Ayumi Tezuka
- Research Institute for Food and AgricultureRyukoku UniversityOtsuShigaJapan
| | - Yasuyuki Nomura
- Research Institute for Food and AgricultureRyukoku UniversityOtsuShigaJapan
| | - Mari Kamitani
- Faculty of AgricultureRyukoku UniversityOtsuShigaJapan
| | - Makoto Kashima
- Research Institute for Food and AgricultureRyukoku UniversityOtsuShigaJapan
- College of Science and EngineeringAoyama Gakuin UniversitySagamiharaKanagawaJapan
| | - Yuko Kurita
- Faculty of AgricultureRyukoku UniversityOtsuShigaJapan
| | - Atsushi J. Nagano
- Faculty of AgricultureRyukoku UniversityOtsuShigaJapan
- Institute for Advanced BiosciencesKeio UniversityTsuruokaYamagataJapan
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50
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Zhang B, Zhou L, Zhou X, Bai Y, Zhan M, Chen J, Xu C. Differential responses of leaf photosynthesis to insect and pathogen outbreaks: A global synthesis. THE SCIENCE OF THE TOTAL ENVIRONMENT 2022; 832:155052. [PMID: 35395301 DOI: 10.1016/j.scitotenv.2022.155052] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/27/2021] [Revised: 03/30/2022] [Accepted: 04/01/2022] [Indexed: 06/14/2023]
Abstract
Outbreak of insects or pathogens (referred to as biotic disturbance), which is projected to continually increase in a warmer climate, may profoundly affect plant photosynthesis and production. However, the response of plant photosynthesis to biotic disturbance remains unclear, especially differences in response between insects and pathogens, which hinders the prediction of plant productivity in future climate. In this study, a meta-analysis approach was used to examine effects of insects and pathogens on photosynthetic rate per unit leaf area (Pn) and the associated characteristics from 115 studies. Our results showed that biotic disturbance significantly decreased Pn by 34.8% but increased Rd by 26.2%. Most of parameters associated with Pn were significantly reduced by biotic disturbance, including gs, Tr, photosynthetic pigments (e.g., a+b, a, and b), and chlorophyll fluorescence properties (Fv/Fm, qp). The disturbance type (insects vs pathogens) was the most important factor affecting the response of Pn, with a greater decrease in Pn by pathogens (-37.5%) than insects (-28.0%). The response ratio of Pn was positively correlated with that of gs and Tr for both insects and pathogens, while negatively with Ci and positively with Chl a+b, ΦPSII, and qp for only pathogens. In addition, the higher sensitivity of Pn to biotic disturbance in crop than non-crop plants poses a great challenge to agricultural system in the future. The weighted response ratio of Pn and relationships of Pn with other associated paramerters under insect and pathogen disturbance will facilitate vegetation models to integrate the effects of biotic disturbance on primary production, improving predicition of the ecosystem carbon cyling in combining with leaf area measurement.
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Affiliation(s)
- Baocheng Zhang
- Moutai Institute, Renhuai 564500, Guizhou Province, China
| | - Lingyan Zhou
- Center for Global Change and Ecological Forecasting, School of Ecological and Environmental Sciences, East China Normal University, Shanghai 200062, China
| | - Xuhui Zhou
- Northeast Asia Ecosystem Carbon Sink Research Center (NACC), Center for Ecological Research, Key Laboratory of Sustainable Forest Ecosystem Management-Ministry of Education, School of Forestry, Northeast Forestry University, Harbin 150040, China..
| | - Yanfen Bai
- College of Life Sciences, Zunyi Normal University, Zunyi 563002, China
| | - Maokui Zhan
- Zunyi Institute of Forestry Science, Zunyi 563002, China; Key Laboratory of Forest Protection of the State Forestry Bureau, Forest Ecological Environment and Protection Research Institute of Chinese Academy of forestry, Beijing 100091, China
| | - Ji Chen
- State Key Laboratory of Loess and Quaternary Geology (SKLLQG), Key Laboratory of Aerosol Chemistry and Physics, Institute of Earth Environment, Chinese Academy of Sciences, Xi'an 710061, China
| | - Chengyuan Xu
- Faculty of Science, Health, Education and Engineering, University of the Sunshine Coast, Maroochydore DC, QLD 4558, Australia; Environmental Futures Research Institute, School of Natural Sciences, Griffith University, Nathan, Brisbane, Queensland 4111, Australia
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