• Reference Citation Analysis
  • v
  • v
  • Find an Article
Find an Article PDF (4864265)   Today's Articles (78)
For: Golicz AA, Batley J, Edwards D. Towards plant pangenomics. Plant Biotechnol J 2016;14:1099-105. [PMID: 26593040 PMCID: PMC11388911 DOI: 10.1111/pbi.12499] [Citation(s) in RCA: 139] [Impact Index Per Article: 15.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/02/2015] [Revised: 09/18/2015] [Accepted: 10/04/2015] [Indexed: 05/05/2023]
Number Cited by Other Article(s)
1
Wei S, Chougule K, Olson A, Lu Z, Tello-Ruiz MK, Kumar V, Kumari S, Zhang L, Olson A, Kim C, Gladman N, Ware D. GrameneOryza: a comprehensive resource for Oryza genomes, genetic variation, and functional data. Database (Oxford) 2025;2025:baaf021. [PMID: 40214100 PMCID: PMC11986821 DOI: 10.1093/database/baaf021] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/11/2024] [Revised: 01/29/2025] [Accepted: 03/27/2025] [Indexed: 04/14/2025]
2
Liu R, Hu C, Gao D, Li M, Yuan X, Chen L, Shu Q, Wang Z, Yang X, Dai Z, Yu H, Yang F, Zheng A, Lv M, Garg V, Jiao C, Zhang H, Hou W, Teng C, Zhou X, Du C, Xiang C, Xu D, Tang Y, Chitikineni A, Duan Y, Maalouf F, Agrawal SK, Wei L, Zhao N, Barmukh R, Li X, Wang D, Ding H, Liu Y, Chen X, Varshney RK, He Y, Zong X, Yang T. A special short-wing petal faba genome and genetic dissection of floral and yield-related traits accelerate breeding and improvement of faba bean. Genome Biol 2025;26:62. [PMID: 40098156 PMCID: PMC11916958 DOI: 10.1186/s13059-025-03532-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/02/2024] [Accepted: 03/06/2025] [Indexed: 03/19/2025]  Open
3
MacNish TR, Al‐Mamun HA, Bayer PE, McPhan C, Fernandez CGT, Upadhyaya SR, Liu S, Batley J, Parkin IAP, Sharpe AG, Edwards D. Brassica Panache: A multi-species graph pangenome representing presence absence variation across forty-one Brassica genomes. THE PLANT GENOME 2025;18:e20535. [PMID: 39648684 PMCID: PMC11730171 DOI: 10.1002/tpg2.20535] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/03/2024] [Revised: 10/20/2024] [Accepted: 11/01/2024] [Indexed: 12/10/2024]
4
Khanbo S, Phadphon P, Naktang C, Sangsrakru D, Waiyamitra P, Narong N, Yundaeng C, Tangphatsornruang S, Laosatit K, Somta P, Pootakham W. A chromosome-scale genome assembly of mungbean (Vigna radiata). PeerJ 2024;12:e18771. [PMID: 39726742 PMCID: PMC11670757 DOI: 10.7717/peerj.18771] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/17/2024] [Accepted: 12/05/2024] [Indexed: 12/28/2024]  Open
5
Ning W, Wang W, Liu Z, Xie W, Chen H, Hong D, Yang QY, Cheng S, Guo L. The pan-NLRome analysis based on 23 genomes reveals the diversity of NLRs in Brassica napus. MOLECULAR BREEDING : NEW STRATEGIES IN PLANT IMPROVEMENT 2024;44:2. [PMID: 39713061 PMCID: PMC11655762 DOI: 10.1007/s11032-024-01522-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/22/2024] [Accepted: 12/02/2024] [Indexed: 12/24/2024]
6
Sabety J, Svara A, Tegtmeier R, Feulner H, Cho P, Sakina A, Hickok D, Khan A. Unlocking diversity from wild relatives of perennial fruit crops in the pan-genomics era. CURRENT OPINION IN PLANT BIOLOGY 2024;82:102652. [PMID: 39476558 DOI: 10.1016/j.pbi.2024.102652] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/30/2024] [Revised: 09/12/2024] [Accepted: 09/26/2024] [Indexed: 12/07/2024]
7
Kaur H, Shannon LM, Samac DA. A stepwise guide for pangenome development in crop plants: an alfalfa (Medicago sativa) case study. BMC Genomics 2024;25:1022. [PMID: 39482604 PMCID: PMC11526573 DOI: 10.1186/s12864-024-10931-w] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/13/2024] [Accepted: 10/21/2024] [Indexed: 11/03/2024]  Open
8
Guo M, Lian Q, Mei Y, Yang W, Zhao S, Zhang S, Xing X, Zhang H, Gao K, He W, Wang Z, Wang H, Zhou J, Cheng L, Bao Z, Huang S, Yan J, Zhao X. Analyzes of pan-genome and resequencing atlas unveil the genetic basis of jujube domestication. Nat Commun 2024;15:9320. [PMID: 39472552 PMCID: PMC11522667 DOI: 10.1038/s41467-024-53718-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/19/2024] [Accepted: 10/21/2024] [Indexed: 11/02/2024]  Open
9
Matthews CA, Watson-Haigh NS, Burton RA, Sheppard AE. A gentle introduction to pangenomics. Brief Bioinform 2024;25:bbae588. [PMID: 39552065 PMCID: PMC11570541 DOI: 10.1093/bib/bbae588] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/25/2024] [Revised: 09/12/2024] [Accepted: 11/01/2024] [Indexed: 11/19/2024]  Open
10
Cortinovis G, Vincenzi L, Anderson R, Marturano G, Marsh JI, Bayer PE, Rocchetti L, Frascarelli G, Lanzavecchia G, Pieri A, Benazzo A, Bellucci E, Di Vittori V, Nanni L, Ferreira Fernández JJ, Rossato M, Aguilar OM, Morrell PL, Rodriguez M, Gioia T, Neumann K, Alvarez Diaz JC, Gratias A, Klopp C, Bitocchi E, Geffroy V, Delledonne M, Edwards D, Papa R. Adaptive gene loss in the common bean pan-genome during range expansion and domestication. Nat Commun 2024;15:6698. [PMID: 39107305 PMCID: PMC11303546 DOI: 10.1038/s41467-024-51032-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/15/2023] [Accepted: 07/28/2024] [Indexed: 08/10/2024]  Open
11
Sarawad A, Hosagoudar S, Parvatikar P. Pan-genomics: Insight into the Functional Genome, Applications, Advancements, and Challenges. Curr Genomics 2024;26:2-14. [PMID: 39911277 PMCID: PMC11793047 DOI: 10.2174/0113892029311541240627111506] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/20/2024] [Revised: 04/30/2024] [Accepted: 05/29/2024] [Indexed: 02/07/2025]  Open
12
Wang P, Abbas M, He J, Zhou L, Cheng H, Guo H. Advances in genome sequencing and artificially induced mutation provides new avenues for cotton breeding. FRONTIERS IN PLANT SCIENCE 2024;15:1400201. [PMID: 39015293 PMCID: PMC11250495 DOI: 10.3389/fpls.2024.1400201] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 03/13/2024] [Accepted: 06/10/2024] [Indexed: 07/18/2024]
13
Wang Y, Li P, Zhu Y, Zhang F, Zhang S, He Y, Wu Y, Lin Y, Wang H, Ren W, Wang L, Yang Y, Wang R, Zheng P, Liu Y, Wang S, Yue J. Graph-Based Pangenome of Actinidia chinensis Reveals Structural Variations Mediating Fruit Degreening. ADVANCED SCIENCE (WEINHEIM, BADEN-WURTTEMBERG, GERMANY) 2024;11:e2400322. [PMID: 38757662 PMCID: PMC11267314 DOI: 10.1002/advs.202400322] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/09/2024] [Revised: 04/19/2024] [Indexed: 05/18/2024]
14
Xie X, Deng X, Chen L, Yuan J, Chen H, Wei C, Liu X, Wuertz S, Qiu G. Integrated genomics provides insights into the evolution of the polyphosphate accumulation trait of Ca. Accumulibacter. ENVIRONMENTAL SCIENCE AND ECOTECHNOLOGY 2024;20:100353. [PMID: 39221073 PMCID: PMC11361876 DOI: 10.1016/j.ese.2023.100353] [Citation(s) in RCA: 5] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 03/14/2023] [Revised: 11/18/2023] [Accepted: 11/23/2023] [Indexed: 09/04/2024]
15
Jiang C, Zhao G, Wang H, Zheng W, Zhang R, Wang L, Zheng Z. Comparative genomics analysis and transposon mutagenesis provides new insights into high menaquinone-7 biosynthetic potential of Bacillus subtilis natto. Gene 2024;907:148264. [PMID: 38346457 DOI: 10.1016/j.gene.2024.148264] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/06/2023] [Revised: 02/05/2024] [Accepted: 02/06/2024] [Indexed: 02/15/2024]
16
Jadhav Y, Thakur NR, Ingle KP, Ceasar SA. The role of phenomics and genomics in delineating the genetic basis of complex traits in millets. PHYSIOLOGIA PLANTARUM 2024;176:e14349. [PMID: 38783512 DOI: 10.1111/ppl.14349] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/12/2024] [Revised: 04/22/2024] [Accepted: 04/26/2024] [Indexed: 05/25/2024]
17
Lu Y, Liu D, Kong X, Song Y, Jing L. Pangenome characterization and analysis of the NAC gene family reveals genes for Sclerotinia sclerotiorum resistance in sunflower (Helianthus annuus). BMC Genom Data 2024;25:39. [PMID: 38693490 PMCID: PMC11064331 DOI: 10.1186/s12863-024-01227-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/07/2024] [Accepted: 04/22/2024] [Indexed: 05/03/2024]  Open
18
Hu H, Li R, Zhao J, Batley J, Edwards D. Technological Development and Advances for Constructing and Analyzing Plant Pangenomes. Genome Biol Evol 2024;16:evae081. [PMID: 38669452 PMCID: PMC11058698 DOI: 10.1093/gbe/evae081] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/06/2023] [Revised: 04/09/2024] [Accepted: 04/11/2024] [Indexed: 04/28/2024]  Open
19
Rosani U, Sollitto M, Fogal N, Salata C. Comparative analysis of Presence-Absence gene Variations in five hard tick species: impact and functional considerations. Int J Parasitol 2024;54:147-156. [PMID: 37806426 DOI: 10.1016/j.ijpara.2023.08.004] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/25/2023] [Revised: 08/06/2023] [Accepted: 08/31/2023] [Indexed: 10/10/2023]
20
Liu X, Zheng J, Ding J, Wu J, Zuo F, Zhang G. When Livestock Genomes Meet Third-Generation Sequencing Technology: From Opportunities to Applications. Genes (Basel) 2024;15:245. [PMID: 38397234 PMCID: PMC10888458 DOI: 10.3390/genes15020245] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/23/2023] [Revised: 01/30/2024] [Accepted: 02/10/2024] [Indexed: 02/25/2024]  Open
21
Qi H, Yu F, Lü S, Damaris RN, Dong G, Yang P. Exploring domestication pattern in lotus: insights from dispensable genome assembly. FRONTIERS IN PLANT SCIENCE 2023;14:1294033. [PMID: 38034573 PMCID: PMC10687544 DOI: 10.3389/fpls.2023.1294033] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 09/14/2023] [Accepted: 11/01/2023] [Indexed: 12/02/2023]
22
Wang T, Duan S, Xu C, Wang Y, Zhang X, Xu X, Chen L, Han Z, Wu T. Pan-genome analysis of 13 Malus accessions reveals structural and sequence variations associated with fruit traits. Nat Commun 2023;14:7377. [PMID: 37968318 PMCID: PMC10651928 DOI: 10.1038/s41467-023-43270-7] [Citation(s) in RCA: 11] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/19/2023] [Accepted: 11/06/2023] [Indexed: 11/17/2023]  Open
23
Saco A, Rey-Campos M, Gallardo-Escárate C, Gerdol M, Novoa B, Figueras A. Gene presence/absence variation in Mytilus galloprovincialis and its implications in gene expression and adaptation. iScience 2023;26:107827. [PMID: 37744033 PMCID: PMC10514466 DOI: 10.1016/j.isci.2023.107827] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/16/2023] [Revised: 07/12/2023] [Accepted: 09/01/2023] [Indexed: 09/26/2023]  Open
24
Kang M, Wu H, Liu H, Liu W, Zhu M, Han Y, Liu W, Chen C, Song Y, Tan L, Yin K, Zhao Y, Yan Z, Lou S, Zan Y, Liu J. The pan-genome and local adaptation of Arabidopsis thaliana. Nat Commun 2023;14:6259. [PMID: 37802986 PMCID: PMC10558531 DOI: 10.1038/s41467-023-42029-4] [Citation(s) in RCA: 32] [Impact Index Per Article: 16.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/18/2022] [Accepted: 09/27/2023] [Indexed: 10/08/2023]  Open
25
Contreras-Moreira B, Saraf S, Naamati G, Casas AM, Amberkar SS, Flicek P, Jones AR, Dyer S. GET_PANGENES: calling pangenes from plant genome alignments confirms presence-absence variation. Genome Biol 2023;24:223. [PMID: 37798615 PMCID: PMC10552430 DOI: 10.1186/s13059-023-03071-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/07/2023] [Accepted: 09/21/2023] [Indexed: 10/07/2023]  Open
26
Lyu X, Xia Y, Wang C, Zhang K, Deng G, Shen Q, Gao W, Zhang M, Liao N, Ling J, Bo Y, Hu Z, Yang J, Zhang M. Pan-genome analysis sheds light on structural variation-based dissection of agronomic traits in melon crops. PLANT PHYSIOLOGY 2023;193:1330-1348. [PMID: 37477947 DOI: 10.1093/plphys/kiad405] [Citation(s) in RCA: 7] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/22/2023] [Accepted: 06/21/2023] [Indexed: 07/22/2023]
27
Naithani S, Deng CH, Sahu SK, Jaiswal P. Exploring Pan-Genomes: An Overview of Resources and Tools for Unraveling Structure, Function, and Evolution of Crop Genes and Genomes. Biomolecules 2023;13:1403. [PMID: 37759803 PMCID: PMC10527062 DOI: 10.3390/biom13091403] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/31/2023] [Revised: 08/29/2023] [Accepted: 09/12/2023] [Indexed: 09/29/2023]  Open
28
Dadras A, Fürst-Jansen JMR, Darienko T, Krone D, Scholz P, Sun S, Herrfurth C, Rieseberg TP, Irisarri I, Steinkamp R, Hansen M, Buschmann H, Valerius O, Braus GH, Hoecker U, Feussner I, Mutwil M, Ischebeck T, de Vries S, Lorenz M, de Vries J. Environmental gradients reveal stress hubs pre-dating plant terrestrialization. NATURE PLANTS 2023;9:1419-1438. [PMID: 37640935 PMCID: PMC10505561 DOI: 10.1038/s41477-023-01491-0] [Citation(s) in RCA: 37] [Impact Index Per Article: 18.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/25/2022] [Accepted: 07/11/2023] [Indexed: 08/31/2023]
29
Glick L, Mayrose I. The Effect of Methodological Considerations on the Construction of Gene-Based Plant Pan-genomes. Genome Biol Evol 2023;15:evad121. [PMID: 37401440 PMCID: PMC10340445 DOI: 10.1093/gbe/evad121] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/29/2023] [Revised: 06/21/2023] [Accepted: 06/28/2023] [Indexed: 07/05/2023]  Open
30
Resistance strategies for defense against Albugo candida causing white rust disease. Microbiol Res 2023;270:127317. [PMID: 36805163 DOI: 10.1016/j.micres.2023.127317] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/26/2022] [Revised: 12/12/2022] [Accepted: 02/01/2023] [Indexed: 02/11/2023]
31
Carballo J, Bellido AM, Selva JP, Zappacosta D, Gallo CA, Albertini E, Caccamo M, Echenique V. From tetraploid to diploid, a pangenomic approach to identify genes lost during synthetic diploidization of Eragrostis curvula. FRONTIERS IN PLANT SCIENCE 2023;14:1133986. [PMID: 36993842 PMCID: PMC10040859 DOI: 10.3389/fpls.2023.1133986] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 12/29/2022] [Accepted: 02/24/2023] [Indexed: 06/19/2023]
32
Innovative Advances in Plant Genotyping. Methods Mol Biol 2023;2638:451-465. [PMID: 36781662 DOI: 10.1007/978-1-0716-3024-2_32] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/15/2023]
33
Gladman N, Goodwin S, Chougule K, Richard McCombie W, Ware D. Era of gapless plant genomes: innovations in sequencing and mapping technologies revolutionize genomics and breeding. Curr Opin Biotechnol 2023;79:102886. [PMID: 36640454 PMCID: PMC9899316 DOI: 10.1016/j.copbio.2022.102886] [Citation(s) in RCA: 19] [Impact Index Per Article: 9.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/24/2022] [Revised: 12/03/2022] [Accepted: 12/13/2022] [Indexed: 01/15/2023]
34
Gui S, Martinez-Rivas FJ, Wen W, Meng M, Yan J, Usadel B, Fernie AR. Going broad and deep: sequencing-driven insights into plant physiology, evolution, and crop domestication. THE PLANT JOURNAL : FOR CELL AND MOLECULAR BIOLOGY 2023;113:446-459. [PMID: 36534120 DOI: 10.1111/tpj.16070] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/26/2022] [Revised: 12/12/2022] [Accepted: 12/13/2022] [Indexed: 06/17/2023]
35
Voelker WG, Krishnan K, Chougule K, Alexander LC, Lu Z, Olson A, Ware D, Songsomboon K, Ponce C, Brenton ZW, Boatwright JL, Cooper EA. Ten new high-quality genome assemblies for diverse bioenergy sorghum genotypes. FRONTIERS IN PLANT SCIENCE 2023;13:1040909. [PMID: 36684744 PMCID: PMC9846640 DOI: 10.3389/fpls.2022.1040909] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 09/09/2022] [Accepted: 12/09/2022] [Indexed: 06/17/2023]
36
Liu C, Wang Y, Peng J, Fan B, Xu D, Wu J, Cao Z, Gao Y, Wang X, Li S, Su Q, Zhang Z, Wang S, Wu X, Shang Q, Shi H, Shen Y, Wang B, Tian J. High-quality genome assembly and pan-genome studies facilitate genetic discovery in mung bean and its improvement. PLANT COMMUNICATIONS 2022;3:100352. [PMID: 35752938 PMCID: PMC9700124 DOI: 10.1016/j.xplc.2022.100352] [Citation(s) in RCA: 30] [Impact Index Per Article: 10.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/14/2022] [Revised: 05/31/2022] [Accepted: 06/22/2022] [Indexed: 05/29/2023]
37
Hameed A, Poznanski P, Nadolska-Orczyk A, Orczyk W. Graph Pangenomes Track Genetic Variants for Crop Improvement. Int J Mol Sci 2022;23:13420. [PMID: 36362207 PMCID: PMC9659059 DOI: 10.3390/ijms232113420] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/06/2022] [Revised: 10/28/2022] [Accepted: 10/29/2022] [Indexed: 09/08/2024]  Open
38
Zandberg JD, Fernandez CT, Danilevicz MF, Thomas WJW, Edwards D, Batley J. The Global Assessment of Oilseed Brassica Crop Species Yield, Yield Stability and the Underlying Genetics. PLANTS (BASEL, SWITZERLAND) 2022;11:2740. [PMID: 36297764 PMCID: PMC9610009 DOI: 10.3390/plants11202740] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 09/05/2022] [Revised: 10/08/2022] [Accepted: 10/09/2022] [Indexed: 06/16/2023]
39
Zia K, Rao MJ, Sadaqat M, Azeem F, Fatima K, Tahir ul Qamar M, Alshammari A, Alharbi M. Pangenome-wide analysis of cyclic nucleotide-gated channel (CNGC) gene family in citrus Spp. Revealed their intraspecies diversity and potential roles in abiotic stress tolerance. Front Genet 2022;13:1034921. [PMID: 36303546 PMCID: PMC9593079 DOI: 10.3389/fgene.2022.1034921] [Citation(s) in RCA: 19] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/02/2022] [Accepted: 09/27/2022] [Indexed: 11/27/2022]  Open
40
Naranjo-Ortiz MA, Molina M, Fuentes D, Mixão V, Gabaldón T. Karyon: a computational framework for the diagnosis of hybrids, aneuploids, and other nonstandard architectures in genome assemblies. Gigascience 2022;11:giac088. [PMID: 36205401 PMCID: PMC9540331 DOI: 10.1093/gigascience/giac088] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/22/2021] [Revised: 11/23/2021] [Accepted: 08/24/2022] [Indexed: 12/22/2022]  Open
41
Yang T, Liu R, Luo Y, Hu S, Wang D, Wang C, Pandey MK, Ge S, Xu Q, Li N, Li G, Huang Y, Saxena RK, Ji Y, Li M, Yan X, He Y, Liu Y, Wang X, Xiang C, Varshney RK, Ding H, Gao S, Zong X. Improved pea reference genome and pan-genome highlight genomic features and evolutionary characteristics. Nat Genet 2022;54:1553-1563. [PMID: 36138232 PMCID: PMC9534762 DOI: 10.1038/s41588-022-01172-2] [Citation(s) in RCA: 66] [Impact Index Per Article: 22.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/22/2021] [Accepted: 07/26/2022] [Indexed: 12/21/2022]
42
Evolutionary divergence of duplicated genomes in newly described allotetraploid cottons. Proc Natl Acad Sci U S A 2022;119:e2208496119. [PMID: 36122204 PMCID: PMC9522333 DOI: 10.1073/pnas.2208496119] [Citation(s) in RCA: 31] [Impact Index Per Article: 10.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]  Open
43
Anilkumar C, Sunitha NC, Devate NB, Ramesh S. Advances in integrated genomic selection for rapid genetic gain in crop improvement: a review. PLANTA 2022;256:87. [PMID: 36149531 DOI: 10.1007/s00425-022-03996-y] [Citation(s) in RCA: 9] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/20/2021] [Accepted: 09/11/2022] [Indexed: 06/16/2023]
44
Lee JH, Venkatesh J, Jo J, Jang S, Kim GW, Kim JM, Han K, Ro N, Lee HY, Kwon JK, Kim YM, Lee TH, Choi D, Van Deynze A, Hill T, Kfir N, Freiman A, Davila Olivas NH, Elkind Y, Paran I, Kang BC. High-quality chromosome-scale genomes facilitate effective identification of large structural variations in hot and sweet peppers. HORTICULTURE RESEARCH 2022;9:uhac210. [PMID: 36467270 PMCID: PMC9715575 DOI: 10.1093/hr/uhac210] [Citation(s) in RCA: 22] [Impact Index Per Article: 7.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/15/2022] [Accepted: 09/13/2022] [Indexed: 06/16/2023]
45
Naqvi RZ, Siddiqui HA, Mahmood MA, Najeebullah S, Ehsan A, Azhar M, Farooq M, Amin I, Asad S, Mukhtar Z, Mansoor S, Asif M. Smart breeding approaches in post-genomics era for developing climate-resilient food crops. FRONTIERS IN PLANT SCIENCE 2022;13:972164. [PMID: 36186056 PMCID: PMC9523482 DOI: 10.3389/fpls.2022.972164] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 06/17/2022] [Accepted: 08/15/2022] [Indexed: 06/16/2023]
46
Yan M, Nie H, Wang Y, Wang X, Jarret R, Zhao J, Wang H, Yang J. Exploring and exploiting genetics and genomics for sweetpotato improvement: Status and perspectives. PLANT COMMUNICATIONS 2022;3:100332. [PMID: 35643086 PMCID: PMC9482988 DOI: 10.1016/j.xplc.2022.100332] [Citation(s) in RCA: 35] [Impact Index Per Article: 11.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/26/2021] [Revised: 04/17/2022] [Accepted: 05/02/2022] [Indexed: 05/14/2023]
47
Lu W, Sui M, Zhao X, Jia H, Han D, Yan X, Han Y. Genome-Wide Identification of Candidate Genes Underlying Soluble Sugar Content in Vegetable Soybean (Glycine max L.) via Association and Expression Analysis. FRONTIERS IN PLANT SCIENCE 2022;13:930639. [PMID: 35991392 PMCID: PMC9387354 DOI: 10.3389/fpls.2022.930639] [Citation(s) in RCA: 10] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/28/2022] [Accepted: 05/18/2022] [Indexed: 05/11/2023]
48
Hu G, Cheng L, Cheng Y, Mao W, Qiao Y, Lan Y. Pan-genome analysis of three main Chinese chestnut varieties. FRONTIERS IN PLANT SCIENCE 2022;13:916550. [PMID: 35958219 PMCID: PMC9358723 DOI: 10.3389/fpls.2022.916550] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/09/2022] [Accepted: 07/05/2022] [Indexed: 05/02/2023]
49
Li W, Liu J, Zhang H, Liu Z, Wang Y, Xing L, He Q, Du H. Plant pan-genomics: recent advances, new challenges, and roads ahead. J Genet Genomics 2022;49:833-846. [PMID: 35750315 DOI: 10.1016/j.jgg.2022.06.004] [Citation(s) in RCA: 41] [Impact Index Per Article: 13.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/21/2022] [Revised: 06/09/2022] [Accepted: 06/10/2022] [Indexed: 10/18/2022]
50
Yadav R, Kalia S, Rangan P, Pradheep K, Rao GP, Kaur V, Pandey R, Rai V, Vasimalla CC, Langyan S, Sharma S, Thangavel B, Rana VS, Vishwakarma H, Shah A, Saxena A, Kumar A, Singh K, Siddique KHM. Current Research Trends and Prospects for Yield and Quality Improvement in Sesame, an Important Oilseed Crop. FRONTIERS IN PLANT SCIENCE 2022;13:863521. [PMID: 35599863 PMCID: PMC9120847 DOI: 10.3389/fpls.2022.863521] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/27/2022] [Accepted: 03/16/2022] [Indexed: 06/04/2023]
PrevPage 1 of 3 123Next
© 2004-2025 Baishideng Publishing Group Inc. All rights reserved. 7041 Koll Center Parkway, Suite 160, Pleasanton, CA 94566, USA