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Wang Y, Jia X, An S, Yin W, Huang J, Jiang X. Nanozyme-Based Regulation of Cellular Metabolism and Their Applications. ADVANCED MATERIALS (DEERFIELD BEACH, FLA.) 2024; 36:e2301810. [PMID: 37017586 DOI: 10.1002/adma.202301810] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/25/2023] [Revised: 03/29/2023] [Indexed: 06/19/2023]
Abstract
Metabolism is the sum of the enzyme-dependent chemical reactions, which produces energy in catabolic process and synthesizes biomass in anabolic process, exhibiting high similarity in mammalian cell, microbial cell, and plant cell. Consequently, the loss or gain of metabolic enzyme activity greatly affects cellular metabolism. Nanozymes, as emerging enzyme mimics with diverse functions and adjustable catalytic activities, have shown attractive potential for metabolic regulation. Although the basic metabolic tasks are highly similar for the cells from different species, the concrete metabolic pathway varies with the intracellular structure of different species. Here, the basic metabolism in living organisms is described and the similarities and differences in the metabolic pathways among mammalian, microbial, and plant cells and the regulation mechanism are discussed. The recent progress on regulation of cellular metabolism mainly including nutrient uptake and utilization, energy production, and the accompanied redox reactions by different kinds of oxidoreductases and their applications in the field of disease therapy, antimicrobial therapy, and sustainable agriculture is systematically reviewed. Furthermore, the prospects and challenges of nanozymes in regulating cell metabolism are also discussed, which broaden their application scenarios.
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Affiliation(s)
- Yue Wang
- State Key Laboratory of Electroanalytical Chemistry, Changchun Institute of Applied Chemistry, Chinese Academy of Sciences, Changchun, Jilin, 130022, China
- Research Center for Analytical Sciences, College of Chemistry, Nankai University, Tianjin, 300071, China
| | - Xiaodan Jia
- State Key Laboratory of Electroanalytical Chemistry, Changchun Institute of Applied Chemistry, Chinese Academy of Sciences, Changchun, Jilin, 130022, China
- Research Center for Analytical Sciences, College of Chemistry, Nankai University, Tianjin, 300071, China
| | - Shangjie An
- State Key Laboratory of Electroanalytical Chemistry, Changchun Institute of Applied Chemistry, Chinese Academy of Sciences, Changchun, Jilin, 130022, China
- School of Applied Chemistry and Engineering, University of Science and Technology of China (USTC), Hefei, Anhui, 230026, China
| | - Wenbo Yin
- State Key Laboratory of Electroanalytical Chemistry, Changchun Institute of Applied Chemistry, Chinese Academy of Sciences, Changchun, Jilin, 130022, China
- School of Applied Chemistry and Engineering, University of Science and Technology of China (USTC), Hefei, Anhui, 230026, China
| | - Jiahao Huang
- State Key Laboratory of Electroanalytical Chemistry, Changchun Institute of Applied Chemistry, Chinese Academy of Sciences, Changchun, Jilin, 130022, China
- School of Applied Chemistry and Engineering, University of Science and Technology of China (USTC), Hefei, Anhui, 230026, China
| | - Xiue Jiang
- State Key Laboratory of Electroanalytical Chemistry, Changchun Institute of Applied Chemistry, Chinese Academy of Sciences, Changchun, Jilin, 130022, China
- School of Applied Chemistry and Engineering, University of Science and Technology of China (USTC), Hefei, Anhui, 230026, China
- Research Center for Analytical Sciences, College of Chemistry, Nankai University, Tianjin, 300071, China
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2
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Ferreira MJ, Rodrigues TA, Pedrosa AG, Silva AR, Vilarinho BG, Francisco T, Azevedo JE. Glutathione and peroxisome redox homeostasis. Redox Biol 2023; 67:102917. [PMID: 37804696 PMCID: PMC10565873 DOI: 10.1016/j.redox.2023.102917] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/28/2023] [Revised: 09/28/2023] [Accepted: 10/02/2023] [Indexed: 10/09/2023] Open
Abstract
Despite intensive research on peroxisome biochemistry, the role of glutathione in peroxisomal redox homeostasis has remained a matter of speculation for many years, and only recently has this issue started to be experimentally addressed. Here, we summarize and compare data from several organisms on the peroxisome-glutathione topic. It is clear from this comparison that the repertoire of glutathione-utilizing enzymes in peroxisomes of different organisms varies widely. In addition, the available data suggest that the kinetic connectivity between the cytosolic and peroxisomal pools of glutathione may also be different in different organisms, with some possessing a peroxisomal membrane that is promptly permeable to glutathione whereas in others this may not be the case. However, regardless of the differences, the picture that emerges from all these data is that glutathione is a crucial component of the antioxidative system that operates inside peroxisomes in all organisms.
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Affiliation(s)
- Maria J Ferreira
- Instituto de Investigação e Inovação em Saúde (I3S), Universidade do Porto, Rua Alfredo Allen, 208, 4200-135, Porto, Portugal; Instituto de Biologia Molecular e Celular (IBMC), Universidade do Porto, Rua Alfredo Allen, 208, 4200-135, Porto, Portugal; Instituto de Ciências Biomédicas de Abel Salazar (ICBAS), Universidade do Porto, Rua de Jorge Viterbo Ferreira, 228, 4050-313, Porto, Portugal
| | - Tony A Rodrigues
- Instituto de Investigação e Inovação em Saúde (I3S), Universidade do Porto, Rua Alfredo Allen, 208, 4200-135, Porto, Portugal; Instituto de Biologia Molecular e Celular (IBMC), Universidade do Porto, Rua Alfredo Allen, 208, 4200-135, Porto, Portugal; Instituto de Ciências Biomédicas de Abel Salazar (ICBAS), Universidade do Porto, Rua de Jorge Viterbo Ferreira, 228, 4050-313, Porto, Portugal
| | - Ana G Pedrosa
- Instituto de Investigação e Inovação em Saúde (I3S), Universidade do Porto, Rua Alfredo Allen, 208, 4200-135, Porto, Portugal; Instituto de Biologia Molecular e Celular (IBMC), Universidade do Porto, Rua Alfredo Allen, 208, 4200-135, Porto, Portugal; Instituto de Ciências Biomédicas de Abel Salazar (ICBAS), Universidade do Porto, Rua de Jorge Viterbo Ferreira, 228, 4050-313, Porto, Portugal
| | - Ana R Silva
- Instituto de Investigação e Inovação em Saúde (I3S), Universidade do Porto, Rua Alfredo Allen, 208, 4200-135, Porto, Portugal
| | - Beatriz G Vilarinho
- Instituto de Investigação e Inovação em Saúde (I3S), Universidade do Porto, Rua Alfredo Allen, 208, 4200-135, Porto, Portugal
| | - Tânia Francisco
- Instituto de Investigação e Inovação em Saúde (I3S), Universidade do Porto, Rua Alfredo Allen, 208, 4200-135, Porto, Portugal; Instituto de Biologia Molecular e Celular (IBMC), Universidade do Porto, Rua Alfredo Allen, 208, 4200-135, Porto, Portugal; Instituto de Ciências Biomédicas de Abel Salazar (ICBAS), Universidade do Porto, Rua de Jorge Viterbo Ferreira, 228, 4050-313, Porto, Portugal.
| | - Jorge E Azevedo
- Instituto de Investigação e Inovação em Saúde (I3S), Universidade do Porto, Rua Alfredo Allen, 208, 4200-135, Porto, Portugal; Instituto de Biologia Molecular e Celular (IBMC), Universidade do Porto, Rua Alfredo Allen, 208, 4200-135, Porto, Portugal; Instituto de Ciências Biomédicas de Abel Salazar (ICBAS), Universidade do Porto, Rua de Jorge Viterbo Ferreira, 228, 4050-313, Porto, Portugal.
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3
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Molinari PE, Krapp AR, Zurbriggen MD, Carrillo N. Lighting the light reactions of photosynthesis by means of redox-responsive genetically encoded biosensors for photosynthetic intermediates. Photochem Photobiol Sci 2023; 22:2005-2018. [PMID: 37195389 DOI: 10.1007/s43630-023-00425-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/05/2022] [Accepted: 04/17/2023] [Indexed: 05/18/2023]
Abstract
Oxygenic photosynthesis involves light and dark phases. In the light phase, photosynthetic electron transport provides reducing power and energy to support the carbon assimilation process. It also contributes signals to defensive, repair, and metabolic pathways critical for plant growth and survival. The redox state of components of the photosynthetic machinery and associated routes determines the extent and direction of plant responses to environmental and developmental stimuli, and therefore, their space- and time-resolved detection in planta becomes critical to understand and engineer plant metabolism. Until recently, studies in living systems have been hampered by the inadequacy of disruptive analytical methods. Genetically encoded indicators based on fluorescent proteins provide new opportunities to illuminate these important issues. We summarize here information about available biosensors designed to monitor the levels and redox state of various components of the light reactions, including NADP(H), glutathione, thioredoxin, and reactive oxygen species. Comparatively few probes have been used in plants, and their application to chloroplasts poses still additional challenges. We discuss advantages and limitations of biosensors based on different principles and propose rationales for the design of novel probes to estimate the NADP(H) and ferredoxin/flavodoxin redox poise, as examples of the exciting questions that could be addressed by further development of these tools. Genetically encoded fluorescent biosensors are remarkable tools to monitor the levels and/or redox state of components of the photosynthetic light reactions and accessory pathways. Reducing equivalents generated at the photosynthetic electron transport chain in the form of NADPH and reduced ferredoxin (FD) are used in central metabolism, regulation, and detoxification of reactive oxygen species (ROS). Redox components of these pathways whose levels and/or redox status have been imaged in plants using biosensors are highlighted in green (NADPH, glutathione, H2O2, thioredoxins). Analytes with available biosensors not tried in plants are shown in pink (NADP+). Finally, redox shuttles with no existing biosensors are circled in light blue. APX, ASC peroxidase; ASC, ascorbate; DHA, dehydroascorbate; DHAR, DHA reductase; FNR, FD-NADP+ reductase; FTR, FD-TRX reductase; GPX, glutathione peroxidase; GR, glutathione reductase; GSH, reduced glutathione; GSSG, oxidized glutathione; MDA, monodehydroascorbate; MDAR, MDA reductase; NTRC, NADPH-TRX reductase C; OAA, oxaloacetate; PRX, peroxiredoxin; PSI, photosystem I; PSII: photosystem II; SOD, superoxide dismutase; TRX, thioredoxin.
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Affiliation(s)
- Pamela E Molinari
- Instituto de Biología Molecular y Celular de Rosario (UNR/CONICET), Facultad de Ciencias Bioquímicas y Farmacéuticas, Universidad Nacional de Rosario, Rosario, Argentina
| | - Adriana R Krapp
- Instituto de Biología Molecular y Celular de Rosario (UNR/CONICET), Facultad de Ciencias Bioquímicas y Farmacéuticas, Universidad Nacional de Rosario, Rosario, Argentina
| | - Matias D Zurbriggen
- Institute of Synthetic Biology and CEPLAS, University of Düsseldorf, Düsseldorf, Germany
| | - Néstor Carrillo
- Instituto de Biología Molecular y Celular de Rosario (UNR/CONICET), Facultad de Ciencias Bioquímicas y Farmacéuticas, Universidad Nacional de Rosario, Rosario, Argentina.
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4
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Sandalio LM, Collado-Arenal AM, Romero-Puertas MC. Deciphering peroxisomal reactive species interactome and redox signalling networks. Free Radic Biol Med 2023; 197:58-70. [PMID: 36642282 DOI: 10.1016/j.freeradbiomed.2023.01.014] [Citation(s) in RCA: 8] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 10/14/2022] [Revised: 12/19/2022] [Accepted: 01/12/2023] [Indexed: 01/15/2023]
Abstract
Plant peroxisomes are highly dynamic organelles with regard to metabolic pathways, number and morphology and participate in different metabolic processes and cell responses to their environment. Peroxisomes from animal and plant cells house a complex system of reactive oxygen species (ROS) production associated to different metabolic pathways which are under control of an important set of enzymatic and non enzymatic antioxidative defenses. Nitric oxide (NO) and its derivate reactive nitrogen species (RNS) are also produced in these organelles. Peroxisomes can regulate ROS and NO/RNS levels to allow their role as signalling molecules. The metabolism of other reactive species such as carbonyl reactive species (CRS) and sulfur reactive species (SRS) in peroxisomes and their relationship with ROS and NO have not been explored in depth. In this review, we define a peroxisomal reactive species interactome (PRSI), including all reactive species ROS, RNS, CRS and SRS, their interaction and effect on target molecules contributing to the dynamic redox/ROS homeostasis and plasticity of peroxisomes, enabling fine-tuned regulation of signalling networks associated with peroxisome-dependent H2O2. Particular attention will be paid to update the information available on H2O2-dependent peroxisomal retrograde signalling and to discuss a specific peroxisomal footprint.
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Affiliation(s)
- Luisa M Sandalio
- Department of Biochemistry, Cell and Molecular Biology of Plants, Estación Experimental del Zaidín (EEZ), Consejo Superior de Investigaciones Científicas (CSIC), C/ Profesor Albareda 1, 18008, Granada, Spain.
| | - Aurelio M Collado-Arenal
- Department of Biochemistry, Cell and Molecular Biology of Plants, Estación Experimental del Zaidín (EEZ), Consejo Superior de Investigaciones Científicas (CSIC), C/ Profesor Albareda 1, 18008, Granada, Spain
| | - María C Romero-Puertas
- Department of Biochemistry, Cell and Molecular Biology of Plants, Estación Experimental del Zaidín (EEZ), Consejo Superior de Investigaciones Científicas (CSIC), C/ Profesor Albareda 1, 18008, Granada, Spain
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5
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Hipsch M, Michael Y, Lampl N, Sapir O, Cohen Y, Helman D, Rosenwasser S. Early detection of late blight in potato by whole-plant redox imaging. THE PLANT JOURNAL : FOR CELL AND MOLECULAR BIOLOGY 2023; 113:649-664. [PMID: 36534114 DOI: 10.1111/tpj.16071] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/25/2022] [Revised: 12/06/2022] [Accepted: 12/12/2022] [Indexed: 06/17/2023]
Abstract
Late blight caused by the oomycete Phytophthora infestans is a most devastating disease of potatoes (Solanum tuberosum). Its early detection is crucial for suppressing disease spread. Necrotic lesions are normally seen in leaves at 4 days post-inoculation (dpi) when colonized cells are dead, but early detection of the initial biotrophic growth stage, when the pathogen feeds on living cells, is challenging. Here, the biotrophic growth phase of P. infestans was detected by whole-plant redox imaging of potato plants expressing chloroplast-targeted reduction-oxidation sensitive green fluorescent protein (chl-roGFP2). Clear spots on potato leaves with a lower chl-roGFP2 oxidation state were detected as early as 2 dpi, before any visual symptoms were recorded. These spots were particularly evident during light-to-dark transitions, and reflected the mislocalization of chl-roGFP2 outside the chloroplasts. Image analysis based on machine learning enabled systematic identification and quantification of spots, and unbiased classification of infected and uninfected leaves in inoculated plants. Comparing redox with chlorophyll fluorescence imaging showed that infected leaf areas that exhibit mislocalized chl-roGFP2 also showed reduced non-photochemical quenching and enhanced quantum PSII yield (ΦPSII) compared with the surrounding leaf areas. The data suggest that mislocalization of chloroplast-targeted proteins is an efficient marker of late blight infection, and demonstrate how it can be utilized for non-destructive monitoring of the disease biotrophic stage using whole-plant redox imaging.
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Affiliation(s)
- Matanel Hipsch
- The Robert H. Smith Institute of Plant Sciences and Genetics in Agriculture, The Hebrew University of Jerusalem, Rehovot, 7610000, Israel
| | - Yaron Michael
- Department of Soil & Water Sciences, Institute of Environmental Sciences, The Robert H. Smith Faculty of Agriculture, Food and Environment, The Hebrew University of Jerusalem, Rehovot, 7610001, Israel
| | - Nardy Lampl
- The Robert H. Smith Institute of Plant Sciences and Genetics in Agriculture, The Hebrew University of Jerusalem, Rehovot, 7610000, Israel
| | - Omer Sapir
- The Robert H. Smith Institute of Plant Sciences and Genetics in Agriculture, The Hebrew University of Jerusalem, Rehovot, 7610000, Israel
| | - Yigal Cohen
- Faculty of Life Sciences, Bar-Ilan University, Ramat Gan, 5290000, Israel
| | - David Helman
- Department of Soil & Water Sciences, Institute of Environmental Sciences, The Robert H. Smith Faculty of Agriculture, Food and Environment, The Hebrew University of Jerusalem, Rehovot, 7610001, Israel
- The Advanced School for Environmental Studies, The Hebrew University of Jerusalem, Jerusalem, Israel
| | - Shilo Rosenwasser
- The Robert H. Smith Institute of Plant Sciences and Genetics in Agriculture, The Hebrew University of Jerusalem, Rehovot, 7610000, Israel
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6
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Koh E, Brandis A, Fluhr R. Plastid and cytoplasmic origins of 1O 2-mediated transcriptomic responses. FRONTIERS IN PLANT SCIENCE 2022; 13:982610. [PMID: 36420020 PMCID: PMC9676463 DOI: 10.3389/fpls.2022.982610] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 06/30/2022] [Accepted: 10/21/2022] [Indexed: 06/16/2023]
Abstract
The reactive oxygen species singlet oxygen, 1O2, has an extremely short half-life, yet is intimately involved with stress signalling in the cell. We previously showed that the effects of 1O2 on the transcriptome are highly correlated with 80S ribosomal arrest due to oxidation of guanosine residues in mRNA. Here, we show that dysregulation of chlorophyll biosynthesis in the flu mutant or through feeding by δ-aminolevulinic acid can lead to accumulation of photoactive chlorophyll intermediates in the cytoplasm, which generates 1O2 upon exposure to light and causes the oxidation of RNA, eliciting 1O2-responsive genes. In contrast, transcriptomes derived from DCMU treatment, or the Ch1 mutant under moderate light conditions display commonalties with each other but do not induce 1O2 gene signatures. Comparing 1O2 related transcriptomes to an index transcriptome induced by cycloheximide inhibition enables distinction between 1O2 of cytosolic or of plastid origin. These comparisons provide biological insight to cases of mutants or environmental conditions that produce 1O2.
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Affiliation(s)
- Eugene Koh
- Plant and Environmental Sciences, Weizmann Institute of Science, Rehovot, Israel
| | - Alexander Brandis
- Life Sciences Core Facility, Weizmann Institute of Science, Rehovot, Israel
| | - Robert Fluhr
- Plant and Environmental Sciences, Weizmann Institute of Science, Rehovot, Israel
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7
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Gasperl A, Zellnig G, Kocsy G, Müller M. Organelle-specific localization of glutathione in plants grown under different light intensities and spectra. Histochem Cell Biol 2022; 158:213-227. [PMID: 35486180 PMCID: PMC9399215 DOI: 10.1007/s00418-022-02103-2] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 03/24/2022] [Indexed: 12/24/2022]
Abstract
Plant ascorbate and glutathione metabolism counteracts oxidative stress mediated, for example, by excess light. In this review, we discuss the properties of immunocytochemistry and transmission electron microscopy, redox-sensitive dyes or probes and bright-field microscopy, confocal microscopy or fluorescence microscopy for the visualization and quantification of glutathione at the cellular or subcellular level in plants and the quantification of glutathione from isolated organelles. In previous studies, we showed that subcellular ascorbate and glutathione levels in Arabidopsis are affected by high light stress. The use of light-emitting diodes (LEDs) is gaining increasing importance in growing indoor crops and ornamental plants. A combination of different LED types allows custom-made combinations of wavelengths and prevents damage related to high photon flux rates. In this review we provide an overview on how different light spectra and light intensities affect glutathione metabolism at the cellular and subcellular levels in plants. Findings obtained in our most recent study demonstrate that both light intensity and spectrum significantly affected glutathione metabolism in wheat at the transcriptional level and caused genotype-specific reactions in the investigated Arabidopsis lines.
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Affiliation(s)
- Anna Gasperl
- Institute of Biology, Plant Sciences, NAWI Graz, University of Graz, 8010 Graz, Austria
| | - Günther Zellnig
- Institute of Biology, Plant Sciences, NAWI Graz, University of Graz, 8010 Graz, Austria
| | - Gábor Kocsy
- Agricultural Institute, Centre for Agricultural Research, Eötvös Loránd Research Network, 2462 Martonvásár, Hungary
| | - Maria Müller
- Institute of Biology, Plant Sciences, NAWI Graz, University of Graz, 8010 Graz, Austria
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8
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Reactive oxygen species signalling in plant stress responses. Nat Rev Mol Cell Biol 2022; 23:663-679. [PMID: 35760900 DOI: 10.1038/s41580-022-00499-2] [Citation(s) in RCA: 399] [Impact Index Per Article: 199.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 05/18/2022] [Indexed: 11/08/2022]
Abstract
Reactive oxygen species (ROS) are key signalling molecules that enable cells to rapidly respond to different stimuli. In plants, ROS play a crucial role in abiotic and biotic stress sensing, integration of different environmental signals and activation of stress-response networks, thus contributing to the establishment of defence mechanisms and plant resilience. Recent advances in the study of ROS signalling in plants include the identification of ROS receptors and key regulatory hubs that connect ROS signalling with other important stress-response signal transduction pathways and hormones, as well as new roles for ROS in organelle-to-organelle and cell-to-cell signalling. Our understanding of how ROS are regulated in cells by balancing production, scavenging and transport has also increased. In this Review, we discuss these promising developments and how they might be used to increase plant resilience to environmental stress.
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9
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Doron S, Lampl N, Savidor A, Katina C, Gabashvili A, Levin Y, Rosenwasser S. SPEAR: A proteomics approach for simultaneous protein expression and redox analysis. Free Radic Biol Med 2021; 176:366-377. [PMID: 34619326 DOI: 10.1016/j.freeradbiomed.2021.10.001] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 07/21/2021] [Revised: 09/30/2021] [Accepted: 10/01/2021] [Indexed: 01/02/2023]
Abstract
Oxidation and reduction of protein cysteinyl thiols serve as molecular switches, which is considered the most central mechanism for redox regulation of biological processes, altering protein structure, biochemical activity, subcellular localization, and binding affinity. Redox proteomics allows global identification of redox-modified cysteine (Cys) sites and quantification of their reversible oxidation/reduction responses, serving as a hypothesis-generating platform to stimulate redox biology mechanistic research. Here, we developed Simultaneous Protein Expression and Redox (SPEAR) analysis, a new redox-proteomics approach based on differential labeling of reversibly oxidized and reduced cysteines with light and heavy isotopic forms of commercially available isotopically-labeled N-ethylmaleimide (NEM). The presented method does not require enrichment for labeled peptides, thus enabling simultaneous quantification of Cys reversible oxidation state and protein abundance. Using SPEAR, we were able to quantify the in-vivo reversible oxidation state of thousands of cysteines across the Arabidopsis proteome under steady-state and oxidative stress conditions. Functional assignment of the identified redox-sensitive proteins demonstrated the widespread effect of oxidative conditions on various cellular functions and highlighted the enrichment of chloroplastic proteins. SPEAR provides a simple, straightforward, and cost-effective means of studying redox proteome dynamics. The presented data provide a global quantitative view of the reversible oxidation of well-known redox-regulated active sites and many novel redox-sensitive sites whose role in plant acclimation to stress conditions remains to be further explored.
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Affiliation(s)
- Shani Doron
- The Robert H. Smith Institute of Plant Sciences and Genetics in Agriculture, The Hebrew University of Jerusalem, Rehovot 7610000, Israel
| | - Nardy Lampl
- The Robert H. Smith Institute of Plant Sciences and Genetics in Agriculture, The Hebrew University of Jerusalem, Rehovot 7610000, Israel
| | - Alon Savidor
- de Botton Institute for Protein Profiling, The Nancy and Stephen Grand Israel National Center for Personalized Medicine, Weizmann Institute of Science, Rehovot, Israel
| | - Corine Katina
- de Botton Institute for Protein Profiling, The Nancy and Stephen Grand Israel National Center for Personalized Medicine, Weizmann Institute of Science, Rehovot, Israel
| | - Alexandra Gabashvili
- de Botton Institute for Protein Profiling, The Nancy and Stephen Grand Israel National Center for Personalized Medicine, Weizmann Institute of Science, Rehovot, Israel
| | - Yishai Levin
- de Botton Institute for Protein Profiling, The Nancy and Stephen Grand Israel National Center for Personalized Medicine, Weizmann Institute of Science, Rehovot, Israel.
| | - Shilo Rosenwasser
- The Robert H. Smith Institute of Plant Sciences and Genetics in Agriculture, The Hebrew University of Jerusalem, Rehovot 7610000, Israel.
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10
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Hipsch M, Lampl N, Zelinger E, Barda O, Waiger D, Rosenwasser S. Sensing stress responses in potato with whole-plant redox imaging. PLANT PHYSIOLOGY 2021; 187:618-631. [PMID: 33823032 PMCID: PMC8491016 DOI: 10.1093/plphys/kiab159] [Citation(s) in RCA: 19] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/01/2021] [Accepted: 03/22/2021] [Indexed: 05/03/2023]
Abstract
Environmental stresses are among the major factors that limit crop productivity and plant growth. Various nondestructive approaches for monitoring plant stress states have been developed. However, early sensing of the initial biochemical events during stress responses remains a significant challenge. In this work, we established whole-plant redox imaging using potato (Solanum tuberosum) plants expressing a chloroplast-targeted redox-sensitive green fluorescence protein 2 (roGFP2), which reports the glutathione redox potential (EGSH). Ratiometric imaging analysis demonstrated the probe response to redox perturbations induced by H2O2, DTT, or a GSH biosynthesis inhibitor. We mapped alterations in the chloroplast EGSH under several stress conditions including, high-light (HL), cold, and drought. An extremely high increase in chloroplast EGSH was observed under the combination of HL and low temperatures, conditions that specifically induce PSI photoinhibition. Intriguingly, we noted a higher reduced state in newly developed compared with mature leaves under steady-state and stress conditions, suggesting a graded stress sensitivity as part of the plant strategies for coping with stress. The presented observations suggest that whole-plant redox imaging can serve as a powerful tool for the basic understanding of plant stress responses and applied agricultural research, such as toward improving phenotyping capabilities in breeding programs and early detection of stress responses in the field.
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Affiliation(s)
- Matanel Hipsch
- The Robert H. Smith Institute of Plant Sciences and Genetics in Agriculture, The Hebrew University of Jerusalem, Rehovot 7610000, Israel
| | - Nardy Lampl
- The Robert H. Smith Institute of Plant Sciences and Genetics in Agriculture, The Hebrew University of Jerusalem, Rehovot 7610000, Israel
| | - Einat Zelinger
- Center for Scientific Imaging Core Facility, The Robert H. Smith Faculty of Agriculture, Food & Environment, The Hebrew University of Jerusalem, Rehovot 7610001, Israel
| | - Orel Barda
- The Robert H. Smith Institute of Plant Sciences and Genetics in Agriculture, The Hebrew University of Jerusalem, Rehovot 7610000, Israel
| | - Daniel Waiger
- Center for Scientific Imaging Core Facility, The Robert H. Smith Faculty of Agriculture, Food & Environment, The Hebrew University of Jerusalem, Rehovot 7610001, Israel
| | - Shilo Rosenwasser
- The Robert H. Smith Institute of Plant Sciences and Genetics in Agriculture, The Hebrew University of Jerusalem, Rehovot 7610000, Israel
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11
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Malangisha GK, Li C, Yang H, Mahmoud A, Ali A, Wang C, Yang Y, Yang J, Hu Z, Zhang M. Permissive action of H 2O 2 mediated ClUGT75 expression for auxin glycosylation and Al 3+- tolerance in watermelon. PLANT PHYSIOLOGY AND BIOCHEMISTRY : PPB 2021; 167:77-90. [PMID: 34340025 DOI: 10.1016/j.plaphy.2021.07.022] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/23/2021] [Revised: 07/04/2021] [Accepted: 07/20/2021] [Indexed: 06/13/2023]
Abstract
Although Al3+-toxicity is one of the limiting factors for crop production in acidic soils, little is known about the Al3+-tolerance mechanism in watermelon, a fairly acid-tolerant crop. This work aimed to identify the interaction between the H2O2 scavenging pathway and auxin glycosylation relevant to watermelon Al3+-tolerance. By analyzing expressions of hormone-related ClUGTs and antioxidant enzyme genes in Al3+-tolerant (ZJ) and Al3+-sensitive (NBT) cultivars, we identified ClUGT75s (B1, B2, and D1) and ClSOD1-2-ClCAT as crucial components associated with Al3+-tolerance. Al3+-stress significantly increased H2O2 content by 92.7% in NBT and 42.3% in ZJ, accompanied by less Al3+-, auxin (IAA and IBA), and MDA contents in ZJ than NBT. These findings coincided with significant ClSOD1-2 expression and stable dismutation activity in NBT than ZJ. Hence, higher H2O2 content in the root apex of NBT than ZJ correlated with a significant increase in auxin content and ClSOD1-2 up-regulation. Moreover, Al3+-activated ClUGT75D1 and ClUGT75B2 in ZJ coincided with no considerable change in IBA content, suggesting that glycosylation-mediated changes in IBA content might be relevant to Al3+-tolerance in watermelon. Furthermore, exogenous H2O2 and IBA indicated ClUGT75D1 modulating IBA is likely dependent on H2O2 background. We hypothesize that a higher H2O2 level in NBT represses ClUGT75, resulting in increased auxin than those in ZJ roots. Thus, excess in both H2O2 and auxin aggravated the inhibition of root elongation under Al3+-stress. Our findings provide insights on the permissive action of H2O2 in the mediation of auxin glycosylation by ClUGT75 in root apex for Al3+-tolerance in watermelon.
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Affiliation(s)
- Guy Kateta Malangisha
- Laboratory of Germplasm Innovation and Molecular Breeding, College of Agriculture and Biotechnology, Zhejiang University, Hangzhou, 310058, PR China; Hainan Institute of Zhejiang University, Yazhou District, Sanya, 572025, PR China; Key Laboratory of Horticultural Plant Growth, Development and Quality Improvement, Ministry of Agriculture, Hangzhou, 310058, PR China; Faculté des Sciences Agronomiques, Université de Lubumbashi, /UNILU, Lubumbashi, République Démocratique Du Congo/PO Box 1825, PR China
| | - Cheng Li
- Laboratory of Germplasm Innovation and Molecular Breeding, College of Agriculture and Biotechnology, Zhejiang University, Hangzhou, 310058, PR China
| | - Haiyang Yang
- Laboratory of Germplasm Innovation and Molecular Breeding, College of Agriculture and Biotechnology, Zhejiang University, Hangzhou, 310058, PR China
| | - Ahmed Mahmoud
- Laboratory of Germplasm Innovation and Molecular Breeding, College of Agriculture and Biotechnology, Zhejiang University, Hangzhou, 310058, PR China
| | - Abid Ali
- Laboratory of Germplasm Innovation and Molecular Breeding, College of Agriculture and Biotechnology, Zhejiang University, Hangzhou, 310058, PR China
| | - Chi Wang
- Agriculture, Rural Development and Water Conservancy Bureau of Wenling, Wenling, 317500, PR China
| | - Yubin Yang
- Agriculture, Rural Development and Water Conservancy Bureau of Wenling, Wenling, 317500, PR China
| | - Jinghua Yang
- Laboratory of Germplasm Innovation and Molecular Breeding, College of Agriculture and Biotechnology, Zhejiang University, Hangzhou, 310058, PR China; Hainan Institute of Zhejiang University, Yazhou District, Sanya, 572025, PR China; Key Laboratory of Horticultural Plant Growth, Development and Quality Improvement, Ministry of Agriculture, Hangzhou, 310058, PR China
| | - Zhongyuan Hu
- Laboratory of Germplasm Innovation and Molecular Breeding, College of Agriculture and Biotechnology, Zhejiang University, Hangzhou, 310058, PR China; Hainan Institute of Zhejiang University, Yazhou District, Sanya, 572025, PR China; Key Laboratory of Horticultural Plant Growth, Development and Quality Improvement, Ministry of Agriculture, Hangzhou, 310058, PR China.
| | - Mingfang Zhang
- Laboratory of Germplasm Innovation and Molecular Breeding, College of Agriculture and Biotechnology, Zhejiang University, Hangzhou, 310058, PR China; Hainan Institute of Zhejiang University, Yazhou District, Sanya, 572025, PR China; Key Laboratory of Horticultural Plant Growth, Development and Quality Improvement, Ministry of Agriculture, Hangzhou, 310058, PR China
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12
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Hydrogen Sulfide Enhances Plant Tolerance to Waterlogging Stress. PLANTS 2021; 10:plants10091928. [PMID: 34579462 PMCID: PMC8468677 DOI: 10.3390/plants10091928] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 08/24/2021] [Revised: 09/13/2021] [Accepted: 09/13/2021] [Indexed: 12/26/2022]
Abstract
Hydrogen sulfide (H2S) is considered the third gas signal molecule in recent years. A large number of studies have shown that H2S not only played an important role in animals but also participated in the regulation of plant growth and development and responses to various environmental stresses. Waterlogging, as a kind of abiotic stress, poses a serious threat to land-based waterlogging-sensitive plants, and which H2S plays an indispensable role in response to. In this review, we summarized that H2S improves resistance to waterlogging stress by affecting lateral root development, photosynthetic efficiency, and cell fates. Here, we reviewed the roles of H2S in plant resistance to waterlogging stress, focusing on the mechanism of its promotion to gained hypoxia tolerance. Finally, we raised relevant issues that needed to be addressed.
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13
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Haber Z, Lampl N, Meyer AJ, Zelinger E, Hipsch M, Rosenwasser S. Resolving diurnal dynamics of the chloroplastic glutathione redox state in Arabidopsis reveals its photosynthetically derived oxidation. THE PLANT CELL 2021; 33:1828-1844. [PMID: 33624811 PMCID: PMC8254480 DOI: 10.1093/plcell/koab068] [Citation(s) in RCA: 15] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/15/2020] [Accepted: 02/23/2021] [Indexed: 05/05/2023]
Abstract
Plants are subjected to fluctuations in light intensity, and this might cause unbalanced photosynthetic electron fluxes and overproduction of reactive oxygen species (ROS). Electrons needed for ROS detoxification are drawn, at least partially, from the cellular glutathione (GSH) pool via the ascorbate-glutathione cycle. Here, we explore the dynamics of the chloroplastic glutathione redox potential (chl-EGSH) using high-temporal-resolution monitoring of Arabidopsis (Arabidopsis thaliana) lines expressing the reduction-oxidation sensitive green fluorescent protein 2 (roGFP2) in chloroplasts. This was carried out over several days under dynamic environmental conditions and in correlation with PSII operating efficiency. Peaks in chl-EGSH oxidation during dark-to-light and light-to-dark transitions were observed. Increasing light intensities triggered a binary oxidation response, with a threshold around the light saturating point, suggesting two regulated oxidative states of the chl-EGSH. These patterns were not affected in npq1 plants, which are impaired in non-photochemical quenching. Oscillations between the two oxidation states were observed under fluctuating light in WT and npq1 plants, but not in pgr5 plants, suggesting a role for PSI photoinhibition in regulating the chl-EGSH dynamics. Remarkably, pgr5 plants showed an increase in chl-EGSH oxidation during the nights following light stresses, linking daytime photoinhibition and nighttime GSH metabolism. This work provides a systematic view of the dynamics of the in vivo chloroplastic glutathione redox state during varying light conditions.
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Affiliation(s)
- Zechariah Haber
- The Robert H. Smith Institute of Plant Sciences and Genetics in Agriculture,
The Hebrew University of Jerusalem, Rehovot 7610000, Israel
| | - Nardy Lampl
- The Robert H. Smith Institute of Plant Sciences and Genetics in Agriculture,
The Hebrew University of Jerusalem, Rehovot 7610000, Israel
| | - Andreas J Meyer
- Institute of Crop Science and Resource Conservation (INRES), Rheinische
Friedrich–Wilhelms Universität Bonn, Friedrich-Ebert-Allee 144, D-53113
Bonn, Germany
| | - Einat Zelinger
- The Interdepartmental Equipment Unit, The Robert H. Smith Faculty of
Agriculture, Food and Environment, The Hebrew University of Jerusalem,
Rehovot 7610001, Israel
| | - Matanel Hipsch
- The Robert H. Smith Institute of Plant Sciences and Genetics in Agriculture,
The Hebrew University of Jerusalem, Rehovot 7610000, Israel
| | - Shilo Rosenwasser
- The Robert H. Smith Institute of Plant Sciences and Genetics in Agriculture,
The Hebrew University of Jerusalem, Rehovot 7610000, Israel
- Author for correspondence:
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14
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Lhee D, Lee J, Ettahi K, Cho CH, Ha JS, Chan YF, Zelzion U, Stephens TG, Price DC, Gabr A, Nowack ECM, Bhattacharya D, Yoon HS. Amoeba Genome Reveals Dominant Host Contribution to Plastid Endosymbiosis. Mol Biol Evol 2021; 38:344-357. [PMID: 32790833 PMCID: PMC7826189 DOI: 10.1093/molbev/msaa206] [Citation(s) in RCA: 16] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Key Words] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022] Open
Abstract
Eukaryotic photosynthetic organelles, plastids, are the powerhouses of many aquatic and terrestrial ecosystems. The canonical plastid in algae and plants originated >1 Ga and therefore offers limited insights into the initial stages of organelle evolution. To address this issue, we focus here on the photosynthetic amoeba Paulinella micropora strain KR01 (hereafter, KR01) that underwent a more recent (∼124 Ma) primary endosymbiosis, resulting in a photosynthetic organelle termed the chromatophore. Analysis of genomic and transcriptomic data resulted in a high-quality draft assembly of size 707 Mb and 32,361 predicted gene models. A total of 291 chromatophore-targeted proteins were predicted in silico, 208 of which comprise the ancestral organelle proteome in photosynthetic Paulinella species with functions, among others, in nucleotide metabolism and oxidative stress response. Gene coexpression analysis identified networks containing known high light stress response genes as well as a variety of genes of unknown function (“dark” genes). We characterized diurnally rhythmic genes in this species and found that over 49% are dark. It was recently hypothesized that large double-stranded DNA viruses may have driven gene transfer to the nucleus in Paulinella and facilitated endosymbiosis. Our analyses do not support this idea, but rather suggest that these viruses in the KR01 and closely related P. micropora MYN1 genomes resulted from a more recent invasion.
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Affiliation(s)
- Duckhyun Lhee
- Department of Biological Sciences, Sungkyunkwan University, Suwon, Korea
| | - JunMo Lee
- Department of Oceanography, Kyungpook National University, Daegu, Korea
| | - Khaoula Ettahi
- Department of Biological Sciences, Sungkyunkwan University, Suwon, Korea
| | - Chung Hyun Cho
- Department of Biological Sciences, Sungkyunkwan University, Suwon, Korea
| | - Ji-San Ha
- Department of Biological Sciences, Sungkyunkwan University, Suwon, Korea
| | - Ya-Fan Chan
- Department of Biochemistry and Microbiology, Rutgers University, New Brunswick, NJ
| | - Udi Zelzion
- Department of Biochemistry and Microbiology, Rutgers University, New Brunswick, NJ
| | - Timothy G Stephens
- Department of Biochemistry and Microbiology, Rutgers University, New Brunswick, NJ
| | - Dana C Price
- Department of Entomology, Center for Vector Biology, Rutgers University, New Brunswick, NJ
| | - Arwa Gabr
- Microbiology and Molecular Genetics Graduate Program, Rutgers University, New Brunswick, NJ
| | - Eva C M Nowack
- Institut für Mikrobielle Zellbiologie, Heinrich-Heine-Universität, Düsseldorf, Germany
| | | | - Hwan Su Yoon
- Department of Biological Sciences, Sungkyunkwan University, Suwon, Korea
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15
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Ma L, Li G. Arabidopsis FAR-RED ELONGATED HYPOCOTYL3 negatively regulates carbon starvation responses. PLANT, CELL & ENVIRONMENT 2021; 44:1816-1829. [PMID: 33715163 DOI: 10.1111/pce.14044] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/25/2020] [Revised: 03/01/2021] [Accepted: 03/06/2021] [Indexed: 06/12/2023]
Abstract
Light is one of the most important environmental factors that affects various cellular processes in plant growth and development; it is also crucial for the metabolism of carbohydrates as it provides the energy source for photosynthesis. Under extended darkness conditions, carbon starvation responses are triggered by depletion of stored energy. Although light rapidly inhibits starvation responses, the molecular mechanisms by which light signalling affects this process remain largely unknown. In this study, we showed that the Arabidopsis thaliana light signalling protein FAR-RED ELONGATED HYPOCOTYL3 (FHY3) and its homolog FAR-RED IMPAIRED RESPONSE1 (FAR1) are essential for plant survival after extended darkness treatment at both seedling and adult stages. Transmission electron microscopy analyses revealed that disruption of both FHY3 and FAR1 resulted in destruction of chloroplast envelopes and thylakoid membranes under extended darkness conditions. Furthermore, treatment with sucrose, but not glucose, completely rescued carbon starvation-induced cell death in the rosette leaves and arrested early seedling establishment in the fhy3 far1 plants. We thus concluded that the light signalling proteins FHY3 and FAR1 negatively regulate carbon starvation responses in Arabidopsis.
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Affiliation(s)
- Lin Ma
- School of Biological Science and Technology, University of Jinan, Jinan, China
- State Key Laboratory of Crop Biology, College of Life Sciences, Shandong Agricultural University, Tai'an, China
| | - Gang Li
- State Key Laboratory of Crop Biology, College of Life Sciences, Shandong Agricultural University, Tai'an, China
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16
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Sandalio LM, Peláez-Vico MA, Molina-Moya E, Romero-Puertas MC. Peroxisomes as redox-signaling nodes in intracellular communication and stress responses. PLANT PHYSIOLOGY 2021; 186:22-35. [PMID: 33587125 PMCID: PMC8154099 DOI: 10.1093/plphys/kiab060] [Citation(s) in RCA: 22] [Impact Index Per Article: 7.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/20/2020] [Accepted: 01/22/2021] [Indexed: 05/05/2023]
Abstract
Peroxisomes are redox nodes playing a diverse range of roles in cell functionality and in the perception of and responses to changes in their environment.
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Affiliation(s)
- Luisa M Sandalio
- Department of Biochemistry, Cellular and Molecular Biology of Plants, Estación Experimental del Zaidín-CSIC, Profesor Albareda 1, 18008 Granada, Spain
- Author for communication:
| | - Maria Angeles Peláez-Vico
- Department of Biochemistry, Cellular and Molecular Biology of Plants, Estación Experimental del Zaidín-CSIC, Profesor Albareda 1, 18008 Granada, Spain
| | - Eliana Molina-Moya
- Department of Biochemistry, Cellular and Molecular Biology of Plants, Estación Experimental del Zaidín-CSIC, Profesor Albareda 1, 18008 Granada, Spain
| | - Maria C Romero-Puertas
- Department of Biochemistry, Cellular and Molecular Biology of Plants, Estación Experimental del Zaidín-CSIC, Profesor Albareda 1, 18008 Granada, Spain
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17
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Ugalde JM, Fuchs P, Nietzel T, Cutolo EA, Homagk M, Vothknecht UC, Holuigue L, Schwarzländer M, Müller-Schüssele SJ, Meyer AJ. Chloroplast-derived photo-oxidative stress causes changes in H2O2 and EGSH in other subcellular compartments. PLANT PHYSIOLOGY 2021; 186:125-141. [PMID: 33793922 PMCID: PMC8154069 DOI: 10.1093/plphys/kiaa095] [Citation(s) in RCA: 40] [Impact Index Per Article: 13.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/20/2020] [Accepted: 12/03/2020] [Indexed: 05/19/2023]
Abstract
Metabolic fluctuations in chloroplasts and mitochondria can trigger retrograde signals to modify nuclear gene expression. Mobile signals likely to be involved are reactive oxygen species (ROS), which can operate protein redox switches by oxidation of specific cysteine residues. Redox buffers, such as the highly reduced glutathione pool, serve as reservoirs of reducing power for several ROS-scavenging and ROS-induced damage repair pathways. Formation of glutathione disulfide and a shift of the glutathione redox potential (EGSH) toward less negative values is considered as hallmark of several stress conditions. Here we used the herbicide methyl viologen (MV) to generate ROS locally in chloroplasts of intact Arabidopsis (Arabidopsis thaliana) seedlings and recorded dynamic changes in EGSH and H2O2 levels with the genetically encoded biosensors Grx1-roGFP2 (for EGSH) and roGFP2-Orp1 (for H2O2) targeted to chloroplasts, the cytosol, or mitochondria. Treatment of seedlings with MV caused rapid oxidation in chloroplasts and, subsequently, in the cytosol and mitochondria. MV-induced oxidation was significantly boosted by illumination with actinic light, and largely abolished by inhibitors of photosynthetic electron transport. MV also induced autonomous oxidation in the mitochondrial matrix in an electron transport chain activity-dependent manner that was milder than the oxidation triggered in chloroplasts by the combination of MV and light. In vivo redox biosensing resolves the spatiotemporal dynamics of compartmental responses to local ROS generation and provides a basis for understanding how compartment-specific redox dynamics might operate in retrograde signaling and stress acclimation in plants.
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Affiliation(s)
- José Manuel Ugalde
- Institute of Crop Science and Resource Conservation (INRES), University of Bonn, D-53113 Bonn, Germany
| | - Philippe Fuchs
- Institute of Crop Science and Resource Conservation (INRES), University of Bonn, D-53113 Bonn, Germany
- Institute of Plant Biology and Biotechnology, University of Münster, D-48143 Münster, Germany
| | - Thomas Nietzel
- Institute of Plant Biology and Biotechnology, University of Münster, D-48143 Münster, Germany
| | - Edoardo A Cutolo
- Institute of Cellular and Molecular Botany (IZMB), University of Bonn, D-53115 Bonn, Germany
| | - Maria Homagk
- Institute of Crop Science and Resource Conservation (INRES), University of Bonn, D-53113 Bonn, Germany
| | - Ute C Vothknecht
- Institute of Cellular and Molecular Botany (IZMB), University of Bonn, D-53115 Bonn, Germany
| | - Loreto Holuigue
- Departamento de Genética Molecular y Microbiología, Facultad de Ciencias Biológicas, Pontificia Universidad Católica de Chile, Santiago 8331150, Chile
| | - Markus Schwarzländer
- Institute of Plant Biology and Biotechnology, University of Münster, D-48143 Münster, Germany
| | | | - Andreas J Meyer
- Institute of Crop Science and Resource Conservation (INRES), University of Bonn, D-53113 Bonn, Germany
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18
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Kumar A, Friedman H, Tsechansky L, Graber ER. Distinctive in-planta acclimation responses to basal growth and acute heat stress were induced in Arabidopsis by cattle manure biochar. Sci Rep 2021; 11:9875. [PMID: 33972570 PMCID: PMC8110981 DOI: 10.1038/s41598-021-88856-7] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/14/2020] [Accepted: 04/19/2021] [Indexed: 11/09/2022] Open
Abstract
In-planta mechanisms of biochar (BC)-mediated improved growth were evaluated by examining oxidative stress, metabolic, and hormonal changes of Arabidopsis wild-type plants under basal or acute heat stress (-HS/ + HS) conditions with or without BC (+ BC/-BC). The oxidative stress was evaluated by using Arabidopsis expressing redox-sensitive green fluorescent protein in the plastids (pla-roGFP2). Fresh biomass and inflorescence height were greater in + BC(‒HS) plants than in the -BC(‒HS) plants, despite similar leaf nutrient levels, photosystem II (PSII) maximal efficiencies and similar oxidative poise. Endogenous levels of jasmonic and abscisic acids were higher in the + BC(‒HS) treatment, suggesting their role in growth improvement. HS in ‒BC plants caused reductions in inflorescence height and PSII maximum quantum yield, as well as significant oxidative stress symptoms manifested by increased lipid peroxidation, greater chloroplast redox poise (oxidized form of roGFP), increased expression of DNAJ heat shock proteins and Zn-finger genes, and reduced expression of glutathione-S-transferase gene in addition to higher abscisic acid and salicylic acid levels. Oxidative stress symptoms were significantly reduced by BC. Results suggest that growth improvements by BC occurring under basal and HS conditions are induced by acclimation mechanisms to 'microstresses' associated with basal growth and to oxidative stress of HS, respectively.
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Affiliation(s)
- Abhay Kumar
- Department of Soil Chemistry, Plant Nutrition and Microbiology, Institute of Soil, Water and Environmental Sciences, Agricultural Research Organization, Volcani Center, Rishon LeZion, 7505101, Israel
| | - Haya Friedman
- Department of Postharvest Science, Agricultural Research Organization, Volcani Center, Rishon LeZion, 7505101, Israel
| | - Ludmila Tsechansky
- Department of Soil Chemistry, Plant Nutrition and Microbiology, Institute of Soil, Water and Environmental Sciences, Agricultural Research Organization, Volcani Center, Rishon LeZion, 7505101, Israel
| | - Ellen R Graber
- Department of Soil Chemistry, Plant Nutrition and Microbiology, Institute of Soil, Water and Environmental Sciences, Agricultural Research Organization, Volcani Center, Rishon LeZion, 7505101, Israel.
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19
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Chen T, Cohen D, Itkin M, Malitsky S, Fluhr R. Lipoxygenase functions in 1O2 production during root responses to osmotic stress. PLANT PHYSIOLOGY 2021; 185:1638-1651. [PMID: 33793947 PMCID: PMC8133667 DOI: 10.1093/plphys/kiab025] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/15/2020] [Accepted: 01/07/2021] [Indexed: 05/27/2023]
Abstract
Drought induces osmotic stress in roots, a condition simulated by the application of high-molecular-weight polyethylene glycol. Osmotic stress results in the reduction of Arabidopsis thaliana root growth and production of 1O2 from an unknown non-photosynthetic source. Reduced root growth can be alleviated by application of the 1O2 scavenger histidine (HIS). Here, we examined the possibility that 1O2 production involves Russell reactions occurring among the enzymatic products of lipoxygenases (LOXs), the fatty acid hydroperoxides. LOX activity was measured for purified soybean (Glycine max) LOX1 and in crude Arabidopsis root extracts using linoleic acid as substrate. Formation of the 13(S)-Hydroperoxy-9(Z),11(E)-octadecadienoic acid product was inhibited by salicylhdroxamic acid, which is a LOX inhibitor, but not by HIS, whereas 1O2 production was inhibited by both. D2O, which specifically extends the half-life of 1O2, augmented the LOX-dependent generation of 1O2, as expected from a Russell-type reaction. The addition of linoleic acid to roots stimulated 1O2 production and inhibited growth, suggesting that the availability of LOX substrate is a rate-limiting step. Indeed, water stress rapidly increased linoleic and linolenic acids by 2.5-fold in roots. Mutants with root-specific microRNA repression of LOXs showed downregulation of LOX protein and activity. The lines with downregulated LOX displayed significantly less 1O2 formation, improved root growth in osmotic stress, and an altered transcriptome response compared with wild type. The results show that LOXs can serve as an enzymatic source of "dark" 1O2 during osmotic stress and demonstrate a role for 1O2 in defining the physiological response.
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Affiliation(s)
- Tomer Chen
- Department of Plant and Environmental Sciences, Weizmann Institute, Rehovot 76100, Israel
| | - Dekel Cohen
- Department of Plant and Environmental Sciences, Weizmann Institute, Rehovot 76100, Israel
| | - Maxim Itkin
- Department of Life Sciences Core Facilities, Weizmann Institute of Science, Rehovot 76100, Israel
| | - Sergey Malitsky
- Department of Plant and Environmental Sciences, Weizmann Institute, Rehovot 76100, Israel
| | - Robert Fluhr
- Department of Plant and Environmental Sciences, Weizmann Institute, Rehovot 76100, Israel
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20
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Eljebbawi A, Guerrero YDCR, Dunand C, Estevez JM. Highlighting reactive oxygen species as multitaskers in root development. iScience 2021; 24:101978. [PMID: 33490891 PMCID: PMC7808913 DOI: 10.1016/j.isci.2020.101978] [Citation(s) in RCA: 40] [Impact Index Per Article: 13.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/04/2022] Open
Abstract
Reactive oxygen species (ROS) are naturally produced by several redox reactions during plant regular metabolism such as photosynthesis and respiration. Due to their chemical properties and high reactivity, ROS were initially described as detrimental for cells during oxidative stress. However, they have been further recognized as key players in numerous developmental and physiological processes throughout the plant life cycle. Recent studies report the important role of ROS as growth regulators during plant root developmental processes such as in meristem maintenance, in root elongation, and in lateral root, root hair, endodermis, and vascular tissue differentiation. All involve multifaceted interplays between steady-state levels of ROS with transcriptional regulators, phytohormones, and nutrients. In this review, we attempt to summarize recent findings about how ROS are involved in multiple stages of plant root development during cell proliferation, elongation, and differentiation.
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Affiliation(s)
- Ali Eljebbawi
- Laboratoire de Recherche en Sciences Végétales, CNRS, UPS, Université de Toulouse, 31326 Castanet Tolosan, France
| | | | - Christophe Dunand
- Laboratoire de Recherche en Sciences Végétales, CNRS, UPS, Université de Toulouse, 31326 Castanet Tolosan, France
| | - José Manuel Estevez
- Fundación Instituto Leloir and IIBBA-CONICET, Av. Patricias Argentinas 435, Buenos Aires, CP C1405BWE, Argentina
- Centro de Biotecnología Vegetal (CBV), Facultad de Ciencias de la Vida (FCsV), Universidad Andres Bello and Millennium Institute for Integrative Biology (iBio), Santiago, Chile
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21
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Gasperl A, Balogh E, Boldizsár Á, Kemeter N, Pirklbauer R, Möstl S, Kalapos B, Szalai G, Müller M, Zellnig G, Kocsy G. Comparison of Light Condition-Dependent Differences in the Accumulation and Subcellular Localization of Glutathione in Arabidopsis and Wheat. Int J Mol Sci 2021; 22:E607. [PMID: 33435361 PMCID: PMC7827723 DOI: 10.3390/ijms22020607] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/23/2020] [Revised: 01/05/2021] [Accepted: 01/07/2021] [Indexed: 12/21/2022] Open
Abstract
This study aimed to clarify whether the light condition-dependent changes in the redox state and subcellular distribution of glutathione were similar in the dicotyledonous model plant Arabidopsis (wild-type, ascorbate- and glutathione-deficient mutants) and the monocotyledonous crop species wheat (Chinese Spring variety). With increasing light intensity, the amount of its reduced (GSH) and oxidized (GSSG) form and the GSSG/GSH ratio increased in the leaf extracts of both species including all genotypes, while far-red light increased these parameters only in wheat except for GSH in the GSH-deficient Arabidopsis mutant. Based on the expression changes of the glutathione metabolism-related genes, light intensity influences the size and redox state of the glutathione pool at the transcriptional level in wheat but not in Arabidopsis. In line with the results in leaf extracts, a similar inducing effect of both light intensity and far-red light was found on the total glutathione content at the subcellular level in wheat. In contrast to the leaf extracts, the inducing influence of light intensity on glutathione level was only found in the cell compartments of the GSH-deficient Arabidopsis mutant, and far-red light increased it in both mutants. The observed general and genotype-specific, light-dependent changes in the accumulation and subcellular distribution of glutathione participate in adjusting the redox-dependent metabolism to the actual environmental conditions.
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Affiliation(s)
- Anna Gasperl
- Institute of Biology, Plant Sciences, University of Graz, NAWI Graz, 8010 Graz, Austria; (A.G.); (N.K.); (R.P.); (S.M.); (M.M.); (G.Z.)
| | - Eszter Balogh
- Agricultural Institute, ELKH Centre for Agricultural Research, 2462 Martonvásár, Hungary; (E.B.); (Á.B.); (B.K.); (G.S.)
| | - Ákos Boldizsár
- Agricultural Institute, ELKH Centre for Agricultural Research, 2462 Martonvásár, Hungary; (E.B.); (Á.B.); (B.K.); (G.S.)
| | - Nadine Kemeter
- Institute of Biology, Plant Sciences, University of Graz, NAWI Graz, 8010 Graz, Austria; (A.G.); (N.K.); (R.P.); (S.M.); (M.M.); (G.Z.)
| | - Richard Pirklbauer
- Institute of Biology, Plant Sciences, University of Graz, NAWI Graz, 8010 Graz, Austria; (A.G.); (N.K.); (R.P.); (S.M.); (M.M.); (G.Z.)
| | - Stefan Möstl
- Institute of Biology, Plant Sciences, University of Graz, NAWI Graz, 8010 Graz, Austria; (A.G.); (N.K.); (R.P.); (S.M.); (M.M.); (G.Z.)
| | - Balázs Kalapos
- Agricultural Institute, ELKH Centre for Agricultural Research, 2462 Martonvásár, Hungary; (E.B.); (Á.B.); (B.K.); (G.S.)
| | - Gabriella Szalai
- Agricultural Institute, ELKH Centre for Agricultural Research, 2462 Martonvásár, Hungary; (E.B.); (Á.B.); (B.K.); (G.S.)
| | - Maria Müller
- Institute of Biology, Plant Sciences, University of Graz, NAWI Graz, 8010 Graz, Austria; (A.G.); (N.K.); (R.P.); (S.M.); (M.M.); (G.Z.)
| | - Günther Zellnig
- Institute of Biology, Plant Sciences, University of Graz, NAWI Graz, 8010 Graz, Austria; (A.G.); (N.K.); (R.P.); (S.M.); (M.M.); (G.Z.)
| | - Gábor Kocsy
- Agricultural Institute, ELKH Centre for Agricultural Research, 2462 Martonvásár, Hungary; (E.B.); (Á.B.); (B.K.); (G.S.)
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Yoshinari A, Moe-Lange J, Kleist TJ, Cartwright HN, Quint DA, Ehrhardt DW, Frommer WB, Nakamura M. Using Genetically Encoded Fluorescent Biosensors for Quantitative In Vivo Imaging. Methods Mol Biol 2020; 2200:303-322. [PMID: 33175384 DOI: 10.1007/978-1-0716-0880-7_14] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/23/2023]
Abstract
Fluorescent biosensors are powerful tools for tracking analytes or cellular processes in live organisms and allowing visualization of the spatial and temporal dynamics of cellular regulators. Fluorescent protein (FP)-based biosensors are extensively employed due to their high selectivity and low invasiveness. A variety of FP-based biosensors have been engineered and applied in plant research to visualize dynamic changes in pH, redox state, concentration of molecules (ions, sugars, peptides, ATP, reactive oxygen species, and phytohormones), and activity of transporters. In this chapter, we briefly summarize reported uses of FP-based biosensors in planta and show simple methods to monitor the dynamics of intracellular Ca2+ in Arabidopsis thaliana using a ratiometric genetically encoded Ca2+ indicator, MatryoshCaMP6s.
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Affiliation(s)
- Akira Yoshinari
- Institute of Transformative Bio-Molecules (WPI-ITbM), Nagoya University, Nagoya, Japan
| | - Jacob Moe-Lange
- Department of Biology, Stanford University, Stanford, CA, USA
| | - Thomas J Kleist
- Institute for Molecular Physiology, Heinrich-Heine-Universität Düsseldorf, Düsseldorf, Germany
| | - Heather N Cartwright
- Department of Plant Biology, Carnegie Institution for Science, Stanford, CA, USA
| | - David A Quint
- Center for Cellular and Biomolecular Machines (NSF-Crest), University of California, Merced, CA, USA
| | - David W Ehrhardt
- Department of Biology, Stanford University, Stanford, CA, USA
- Department of Plant Biology, Carnegie Institution for Science, Stanford, CA, USA
| | - Wolf B Frommer
- Institute of Transformative Bio-Molecules (WPI-ITbM), Nagoya University, Nagoya, Japan
- Institute for Molecular Physiology, Heinrich-Heine-Universität Düsseldorf, Düsseldorf, Germany
| | - Masayoshi Nakamura
- Institute of Transformative Bio-Molecules (WPI-ITbM), Nagoya University, Nagoya, Japan.
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Kostyuk AI, Panova AS, Kokova AD, Kotova DA, Maltsev DI, Podgorny OV, Belousov VV, Bilan DS. In Vivo Imaging with Genetically Encoded Redox Biosensors. Int J Mol Sci 2020; 21:E8164. [PMID: 33142884 PMCID: PMC7662651 DOI: 10.3390/ijms21218164] [Citation(s) in RCA: 27] [Impact Index Per Article: 6.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/09/2020] [Revised: 10/28/2020] [Accepted: 10/29/2020] [Indexed: 12/13/2022] Open
Abstract
Redox reactions are of high fundamental and practical interest since they are involved in both normal physiology and the pathogenesis of various diseases. However, this area of research has always been a relatively problematic field in the context of analytical approaches, mostly because of the unstable nature of the compounds that are measured. Genetically encoded sensors allow for the registration of highly reactive molecules in real-time mode and, therefore, they began a new era in redox biology. Their strongest points manifest most brightly in in vivo experiments and pave the way for the non-invasive investigation of biochemical pathways that proceed in organisms from different systematic groups. In the first part of the review, we briefly describe the redox sensors that were used in vivo as well as summarize the model systems to which they were applied. Next, we thoroughly discuss the biological results obtained in these studies in regard to animals, plants, as well as unicellular eukaryotes and prokaryotes. We hope that this work reflects the amazing power of this technology and can serve as a useful guide for biologists and chemists who work in the field of redox processes.
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Affiliation(s)
- Alexander I. Kostyuk
- Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry, 117997 Moscow, Russia; (A.I.K.); (A.S.P.); (A.D.K.); (D.A.K.); (D.I.M.); (O.V.P.); (V.V.B.)
- Center for Precision Genome Editing and Genetic Technologies for Biomedicine, Pirogov Russian National Research Medical University, 117997 Moscow, Russia
| | - Anastasiya S. Panova
- Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry, 117997 Moscow, Russia; (A.I.K.); (A.S.P.); (A.D.K.); (D.A.K.); (D.I.M.); (O.V.P.); (V.V.B.)
- Center for Precision Genome Editing and Genetic Technologies for Biomedicine, Pirogov Russian National Research Medical University, 117997 Moscow, Russia
| | - Aleksandra D. Kokova
- Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry, 117997 Moscow, Russia; (A.I.K.); (A.S.P.); (A.D.K.); (D.A.K.); (D.I.M.); (O.V.P.); (V.V.B.)
- Center for Precision Genome Editing and Genetic Technologies for Biomedicine, Pirogov Russian National Research Medical University, 117997 Moscow, Russia
| | - Daria A. Kotova
- Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry, 117997 Moscow, Russia; (A.I.K.); (A.S.P.); (A.D.K.); (D.A.K.); (D.I.M.); (O.V.P.); (V.V.B.)
- Center for Precision Genome Editing and Genetic Technologies for Biomedicine, Pirogov Russian National Research Medical University, 117997 Moscow, Russia
| | - Dmitry I. Maltsev
- Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry, 117997 Moscow, Russia; (A.I.K.); (A.S.P.); (A.D.K.); (D.A.K.); (D.I.M.); (O.V.P.); (V.V.B.)
- Federal Center for Cerebrovascular Pathology and Stroke, 117997 Moscow, Russia
| | - Oleg V. Podgorny
- Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry, 117997 Moscow, Russia; (A.I.K.); (A.S.P.); (A.D.K.); (D.A.K.); (D.I.M.); (O.V.P.); (V.V.B.)
- Center for Precision Genome Editing and Genetic Technologies for Biomedicine, Pirogov Russian National Research Medical University, 117997 Moscow, Russia
| | - Vsevolod V. Belousov
- Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry, 117997 Moscow, Russia; (A.I.K.); (A.S.P.); (A.D.K.); (D.A.K.); (D.I.M.); (O.V.P.); (V.V.B.)
- Center for Precision Genome Editing and Genetic Technologies for Biomedicine, Pirogov Russian National Research Medical University, 117997 Moscow, Russia
- Federal Center for Cerebrovascular Pathology and Stroke, 117997 Moscow, Russia
- Institute for Cardiovascular Physiology, Georg August University Göttingen, D-37073 Göttingen, Germany
| | - Dmitry S. Bilan
- Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry, 117997 Moscow, Russia; (A.I.K.); (A.S.P.); (A.D.K.); (D.A.K.); (D.I.M.); (O.V.P.); (V.V.B.)
- Center for Precision Genome Editing and Genetic Technologies for Biomedicine, Pirogov Russian National Research Medical University, 117997 Moscow, Russia
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Telman W, Dietz KJ. Thiol redox-regulation for efficient adjustment of sulfur metabolism in acclimation to abiotic stress. JOURNAL OF EXPERIMENTAL BOTANY 2019; 70:4223-4236. [PMID: 30868161 DOI: 10.1093/jxb/erz118] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/15/2018] [Accepted: 03/07/2019] [Indexed: 06/09/2023]
Abstract
Sulfur assimilation and sulfur metabolism are tightly controlled at the transcriptional, post-transcriptional, and post-translational levels in order to meet the demand for reduced sulfur in growth and metabolism. These regulatory mechanisms coordinate the cellular sulfhydryl supply with carbon and nitrogen assimilation in particular. Redox homeostasis is an important cellular parameter intimately connected to sulfur by means of multiple thiol modifications. Post-translational thiol modifications such as disulfide formation, sulfenylation, S-nitrosylation, persulfidation, and S-glutathionylation allow for versatile switching and adjustment of protein functions. This review focuses on redox-regulation of enzymes involved in the sulfur assimilation pathway, namely adenosine 5´-phosphosulfate reductase (APR), adenosine 5´-phosphosulfate kinase (APSK), and γ-glutamylcysteine ligase (GCL). The activity of these enzymes is adjusted at the transcriptional and post-translational level depending on physiological requirements and the state of the redox and reactive oxygen species network, which are tightly linked to abiotic stress conditions. Hormone-dependent fine-tuning contributes to regulation of sulfur assimilation. Thus, the link between oxylipin signalling and sulfur assimilation has been substantiated by identification of the so-called COPS module in the chloroplast with its components cyclophilin 20-3, O-acetylserine thiol lyase, 2-cysteine peroxiredoxin, and serine acetyl transferase. We now have a detailed understanding of how regulation enables the fine-tuning of sulfur assimilation under both normal and abiotic stress conditions.
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Affiliation(s)
- Wilena Telman
- Department of Biochemistry and Physiology of Plants, Faculty of Biology, Bielefeld University, Universitätsstr. 25, Bielefeld, Germany
| | - Karl-Josef Dietz
- Department of Biochemistry and Physiology of Plants, Faculty of Biology, Bielefeld University, Universitätsstr. 25, Bielefeld, Germany
- Center for Biotechnology-CeBiTec, Bielefeld University, Universitätsstr. 27, Bielefeld, Germany
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25
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Tuzet A, Rahantaniaina MS, Noctor G. Analyzing the Function of Catalase and the Ascorbate-Glutathione Pathway in H 2O 2 Processing: Insights from an Experimentally Constrained Kinetic Model. Antioxid Redox Signal 2019; 30:1238-1268. [PMID: 30044135 DOI: 10.1089/ars.2018.7601] [Citation(s) in RCA: 25] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 12/11/2022]
Abstract
SIGNIFICANCE Plant stress involves redox signaling linked to reactive oxygen species such as hydrogen peroxide (H2O2), which can be generated at high rates in photosynthetic cells. The systems that process H2O2 include catalase (CAT) and the ascorbate-glutathione pathway, but interactions between them remain unclear. Modeling can aid interpretation and pinpoint areas for investigation. Recent Advances: Based on emerging data and concepts, we introduce a new experimentally constrained kinetic model to analyze interactions between H2O2, CAT, ascorbate, glutathione, and NADPH. The sensitivity points required for accurate simulation of experimental observations are analyzed, and the implications for H2O2-linked redox signaling are discussed. CRITICAL ISSUES We discuss several implications of the modeled results, in particular the following. (i) CAT and ascorbate peroxidase can share the load in H2O2 processing even in optimal conditions. (ii) Intracellular H2O2 concentrations more than the low μM range may rarely occur. (iii) Ascorbate redox turnover is largely independent of glutathione until ascorbate peroxidation exceeds a certain value. (iv) NADPH availability may determine glutathione redox status through its influence on monodehydroascorbate reduction. (v) The sensitivity of glutathione status to oxidative stress emphasizes its potential suitability as a sensor of increased H2O2. FUTURE DIRECTIONS Important future questions include the roles of other antioxidative systems in interacting with CAT and the ascorbate-glutathione pathway as well as the nature and significance of processes that achieve redox exchange between different subcellular compartments. Progress in these areas is likely to be favored by integrating kinetic modeling analyses into experimentally based programs, allowing each approach to inform the other.
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Affiliation(s)
- Andrée Tuzet
- 1 Unité Mixte de Recherche ECOSYS/Pôle BIOCLIMATOLOGIE, INRA-AgroParisTech, Thiverval-Grignon, France
| | - Marie-Sylviane Rahantaniaina
- 1 Unité Mixte de Recherche ECOSYS/Pôle BIOCLIMATOLOGIE, INRA-AgroParisTech, Thiverval-Grignon, France.,2 Institute of Plant Sciences Paris-Saclay (IPS2), UMR 9213/UMR1403, Université Paris-Sud, CNRS, INRA, Université d'Evry, Université Paris-Diderot, Sorbonne Paris-Cité, Orsay, France
| | - Graham Noctor
- 2 Institute of Plant Sciences Paris-Saclay (IPS2), UMR 9213/UMR1403, Université Paris-Sud, CNRS, INRA, Université d'Evry, Université Paris-Diderot, Sorbonne Paris-Cité, Orsay, France
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26
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Smirnoff N, Arnaud D. Hydrogen peroxide metabolism and functions in plants. THE NEW PHYTOLOGIST 2019; 221:1197-1214. [PMID: 30222198 DOI: 10.1111/nph.15488] [Citation(s) in RCA: 379] [Impact Index Per Article: 75.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/10/2018] [Accepted: 08/28/2018] [Indexed: 05/18/2023]
Abstract
Contents Summary 1197 I. Introduction 1198 II. Measurement and imaging of H2 O2 1198 III. H2 O2 and O2·- toxicity 1199 IV. Production of H2 O2 : enzymes and subcellular locations 1200 V. H2 O2 transport 1205 VI. Control of H2 O2 concentration: how and where? 1205 VII. Metabolic functions of H2 O2 1207 VIII. H2 O2 signalling 1207 IX. Where next? 1209 Acknowledgements 1209 References 1209 SUMMARY: Hydrogen peroxide (H2 O2 ) is produced, via superoxide and superoxide dismutase, by electron transport in chloroplasts and mitochondria, plasma membrane NADPH oxidases, peroxisomal oxidases, type III peroxidases and other apoplastic oxidases. Intracellular transport is facilitated by aquaporins and H2 O2 is removed by catalase, peroxiredoxin, glutathione peroxidase-like enzymes and ascorbate peroxidase, all of which have cell compartment-specific isoforms. Apoplastic H2 O2 influences cell expansion, development and defence by its involvement in type III peroxidase-mediated polymer cross-linking, lignification and, possibly, cell expansion via H2 O2 -derived hydroxyl radicals. Excess H2 O2 triggers chloroplast and peroxisome autophagy and programmed cell death. The role of H2 O2 in signalling, for example during acclimation to stress and pathogen defence, has received much attention, but the signal transduction mechanisms are poorly defined. H2 O2 oxidizes specific cysteine residues of target proteins to the sulfenic acid form and, similar to other organisms, this modification could initiate thiol-based redox relays and modify target enzymes, receptor kinases and transcription factors. Quantification of the sources and sinks of H2 O2 is being improved by the spatial and temporal resolution of genetically encoded H2 O2 sensors, such as HyPer and roGFP2-Orp1. These H2 O2 sensors, combined with the detection of specific proteins modified by H2 O2 , will allow a deeper understanding of its signalling roles.
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Affiliation(s)
- Nicholas Smirnoff
- Biosciences, College of Life and Environmental Sciences, University of Exeter, Exeter, EX4 4QD, UK
| | - Dominique Arnaud
- Biosciences, College of Life and Environmental Sciences, University of Exeter, Exeter, EX4 4QD, UK
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27
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Fransen M, Lismont C. Redox Signaling from and to Peroxisomes: Progress, Challenges, and Prospects. Antioxid Redox Signal 2019; 30:95-112. [PMID: 29433327 DOI: 10.1089/ars.2018.7515] [Citation(s) in RCA: 41] [Impact Index Per Article: 8.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
Abstract
SIGNIFICANCE Peroxisomes are organelles that are best known for their role in cellular lipid and hydrogen peroxide (H2O2) metabolism. Emerging evidence suggests that these organelles serve as guardians and modulators of cellular redox balance, and that alterations in their redox metabolism may contribute to aging and the development of chronic diseases such as neurodegeneration, diabetes, and cancer. Recent Advances: H2O2 is an important signaling messenger that controls many cellular processes by modulating protein activity through cysteine oxidation. Somewhat surprisingly, the potential involvement of peroxisomes in H2O2-mediated signaling processes has been overlooked for a long time. However, recent advances in the development of live-cell approaches to monitor and modulate spatiotemporal fluxes in redox species at the subcellular level have opened up new avenues for research in redox biology and boosted interest in the concept of peroxisomes as redox signaling platforms. CRITICAL ISSUES This review first introduces the reader to what is known about the role of peroxisomes in cellular H2O2 production and clearance, with a focus on mammalian cells. Next, it briefly describes the benefits and drawbacks of current strategies used to investigate the complex interplay between peroxisome metabolism and cellular redox state. Furthermore, it integrates and critically evaluates literature dealing with the interrelationship between peroxisomal redox metabolism, cell signaling, and human disease. FUTURE DIRECTIONS As the precise molecular mechanisms underlying many of these associations are still poorly understood, a key focus for future research should be the identification of primary targets for peroxisome-derived H2O2.
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Affiliation(s)
- Marc Fransen
- Laboratory of Lipid Biochemistry and Protein Interactions, Department of Cellular and Molecular Medicine, KU Leuven-University of Leuven , Leuven, Belgium
| | - Celien Lismont
- Laboratory of Lipid Biochemistry and Protein Interactions, Department of Cellular and Molecular Medicine, KU Leuven-University of Leuven , Leuven, Belgium
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28
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Hilleary R, Choi WG, Kim SH, Lim SD, Gilroy S. Sense and sensibility: the use of fluorescent protein-based genetically encoded biosensors in plants. CURRENT OPINION IN PLANT BIOLOGY 2018; 46:32-38. [PMID: 30041101 DOI: 10.1016/j.pbi.2018.07.004] [Citation(s) in RCA: 21] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/01/2018] [Revised: 06/27/2018] [Accepted: 07/05/2018] [Indexed: 05/09/2023]
Abstract
Fluorescent protein-based biosensors are providing us with an unprecedented, quantitative view of the dynamic nature of the cellular networks that lie at the heart of plant biology. Such bioreporters can visualize the spatial and temporal kinetics of cellular regulators such as Ca2+ and H+, plant hormones and even allow membrane transport activities to be monitored in real time in living plant cells. The fast pace of their development is making these tools increasingly sensitive and easy to use and the rapidly expanding biosensor toolkit offers great potential for new insights into a wide range of plant regulatory processes. We suggest a checklist of controls that should help avoid some of the more cryptic issues with using these bioreporter technologies.
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Affiliation(s)
- Richard Hilleary
- Department of Botany, University of Wisconsin, Birge Hall, 430 Lincoln Drive, Madison, WI 53706, USA
| | - Won-Gyu Choi
- Department of Biochemistry and Molecular Biology, 1664 N. Virginia Street, University of Nevada, Reno, NV 89557, USA
| | - Su-Hwa Kim
- Department of Biochemistry and Molecular Biology, 1664 N. Virginia Street, University of Nevada, Reno, NV 89557, USA
| | - Sung Don Lim
- Department of Biochemistry and Molecular Biology, 1664 N. Virginia Street, University of Nevada, Reno, NV 89557, USA
| | - Simon Gilroy
- Department of Botany, University of Wisconsin, Birge Hall, 430 Lincoln Drive, Madison, WI 53706, USA.
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29
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Ebeed HT, Stevenson SR, Cuming AC, Baker A. Conserved and differential transcriptional responses of peroxisome associated pathways to drought, dehydration and ABA. JOURNAL OF EXPERIMENTAL BOTANY 2018; 69:4971-4985. [PMID: 30032264 PMCID: PMC6137984 DOI: 10.1093/jxb/ery266] [Citation(s) in RCA: 21] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/22/2018] [Accepted: 07/09/2018] [Indexed: 05/06/2023]
Abstract
Plant peroxisomes are important components of cellular antioxidant networks, dealing with ROS generated by multiple metabolic pathways. Peroxisomes respond to environmental and cellular conditions by changing their size, number, and proteomic content. To investigate the role of peroxisomes in response to drought, dehydration and ABA treatment we took an evolutionary and comparative genomics approach. Colonisation of land required evolution of dehydration tolerance in the absence of subsequent anatomical adaptations. Therefore, the model bryophyte Physcomitrella patens, the model dicot Arabidopsis thaliana and wheat (Tricitcum aestivum), a globally important cereal crop were compared. Three sets of genes namely 'PTS1 genes' (a proxy for genes encoding peroxisome targeted proteins), PEX genes (involved in peroxisome biogenesis) and genes involved in plant antioxidant networks were identified in all 3 species and their expression compared under drought (dehydration) and ABA treatment. Genes encoding enzymes of β-oxidation and gluconeogenesis, antioxidant enzymes including catalase and glutathione reductase and PEX3 and PEX11 isoforms showed conserved up-regulation, and peroxisome proliferation was induced by ABA in moss. Interestingly, expression of some of these genes differed between drought sensitive and resistant genotypes of wheat in line with measured photosynthetic and biochemical differences. These results point to an underappreciated role for peroxisomes in drought response.
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Affiliation(s)
- Heba T Ebeed
- Botany and Microbiology Department, Faculty of Science, Damietta University, Damietta, Egypt
- Centre for Plant Sciences, University of Leeds, Leeds, United Kingdom
| | - Sean R Stevenson
- Centre for Plant Sciences, University of Leeds, Leeds, United Kingdom
| | - Andrew C Cuming
- Centre for Plant Sciences, University of Leeds, Leeds, United Kingdom
| | - Alison Baker
- Centre for Plant Sciences, University of Leeds, Leeds, United Kingdom
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30
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Swain L, Nanadikar MS, Borowik S, Zieseniss A, Katschinski DM. Transgenic Organisms Meet Redox Bioimaging: One Step Closer to Physiology. Antioxid Redox Signal 2018; 29:603-612. [PMID: 29320870 DOI: 10.1089/ars.2017.7469] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
Abstract
SIGNIFICANCE Redox signaling is a common mechanism in the cellular response toward a variety of stimuli. For analyzing redox-dependent specific alterations in a cell, genetically encoded biosensors were highly instrumental in the past. To advance the knowledge about the importance of this signaling mechanism in vivo, models that are as close as possible to physiology are needed. Recent Advances: The development of transgenic (tg) redox biosensor animal models has enhanced the knowledge of redox signaling under patho(physio)logical conditions. So far, commonly used small animal models, that is, Caenorhabditis elegans, Drosophila melanogaster, and Danio rerio, and genetically modified mice were employed for redox biosensor transgenesis. However, especially the available mouse models are still limited. CRITICAL ISSUES The analysis of redox biosensor responses in vivo at the tissue level, especially for internal organs, is hampered by the detection limit of the available redox biosensors and microscopy techniques. Recent technical developments such as redox histology and the analysis of cell-type-specific biosensor responses need to be further refined and followed up in a systematic manner. FUTURE DIRECTIONS The usage of tg animal models in the field of redox signaling has helped to answer open questions. Application of the already established models and consequent development of more defined tg models will enable this research area to define the role of redox signaling in (patho)physiology in further depth. Antioxid. Redox Signal. 29, 603-612.
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Affiliation(s)
- Lija Swain
- 1 Vascular Biology Unit, Boston University School of Medicine, Boston University , Boston, Massachusetts
| | - Maithily S Nanadikar
- 2 Institute of Cardiovascular Physiology, University Medical Center Göttingen, Georg-August University of Göttingen , Göttingen, Germany
| | - Sergej Borowik
- 2 Institute of Cardiovascular Physiology, University Medical Center Göttingen, Georg-August University of Göttingen , Göttingen, Germany
| | - Anke Zieseniss
- 2 Institute of Cardiovascular Physiology, University Medical Center Göttingen, Georg-August University of Göttingen , Göttingen, Germany
| | - Dörthe M Katschinski
- 2 Institute of Cardiovascular Physiology, University Medical Center Göttingen, Georg-August University of Göttingen , Göttingen, Germany
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31
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Walia A, Waadt R, Jones AM. Genetically Encoded Biosensors in Plants: Pathways to Discovery. ANNUAL REVIEW OF PLANT BIOLOGY 2018; 69:497-524. [PMID: 29719164 DOI: 10.1146/annurev-arplant-042817-040104] [Citation(s) in RCA: 71] [Impact Index Per Article: 11.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/21/2023]
Abstract
Genetically encoded biosensors that directly interact with a molecule of interest were first introduced more than 20 years ago with fusion proteins that served as fluorescent indicators for calcium ions. Since then, the technology has matured into a diverse array of biosensors that have been deployed to improve our spatiotemporal understanding of molecules whose dynamics have profound influence on plant physiology and development. In this review, we address several types of biosensors with a focus on genetically encoded calcium indicators, which are now the most diverse and advanced group of biosensors. We then consider the discoveries in plant biology made by using biosensors for calcium, pH, reactive oxygen species, redox conditions, primary metabolites, phytohormones, and nutrients. These discoveries were dependent on the engineering, characterization, and optimization required to develop a successful biosensor; they were also dependent on the methodological developments required to express, detect, and analyze the readout of such biosensors.
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Affiliation(s)
- Ankit Walia
- Sainsbury Laboratory, Cambridge University, Cambridge CB2 1LR, United Kingdom;
| | - Rainer Waadt
- Centre for Organismal Studies, Ruprecht-Karls-Universität Heidelberg, Heidelberg 69120, Germany
| | - Alexander M Jones
- Sainsbury Laboratory, Cambridge University, Cambridge CB2 1LR, United Kingdom;
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32
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Lutterbey MC, von Schaewen A. Analysis of homo- and hetero-dimerization among the three 6-phosphogluconate dehydrogenase isoforms of Arabidopsis. PLANT SIGNALING & BEHAVIOR 2016; 11:e1207034. [PMID: 27366940 PMCID: PMC5117088 DOI: 10.1080/15592324.2016.1207034] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/11/2016] [Revised: 06/21/2016] [Accepted: 06/22/2016] [Indexed: 05/21/2023]
Abstract
We recently described that all three 6-phosphogluconate dehydrogenase (6PGDH) isoforms of Arabidopsis (PGD) with similar length show dual localization: PGD1 and PGD3 in the cytosol and in plastids, and PGD2 in the cytosol and in peroxisomes. We set out to investigate heterodimer formation, however due to only weak homodimerization of all Arabidopsis PGD isoforms in yeast cells, we conducted further protein-protein interaction studies in planta to investigate homomer versus heteromer formation and their sub-cellular localization. Bimolecular fluorescence complementation (BiFC) analyses in co-transfected Arabidopsis protoplasts demonstrated that all PGD isoforms may form homo- and heterodimers. Notably, with free N-terminal ends, PGD1-PGD3 heterodimers were detected both in the cytosol and in the plastid stroma, but heterodimers with PGD2 only in the cytosol. This independently confirmed that PGD2 cannot enter plastids. On the other hand, with free C-terminal ends, PGD1-PGD2 and PGD3-PGD2 heterodimers were confined to the cytosol, indicating that only PGD2 homodimers are imported by peroxisomes. Together these findings suggest functional redundancy of PGD1 and PGD3 inside plastids, and relevance of PGD1-PGD2 or PGD3-PGD2 heterodimer formation in the cytosol: this could retain sufficient 6PGDH activity needed for NADPH provision, especially during stress defense and initiation of developmental responses.
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Affiliation(s)
- Marie-Christin Lutterbey
- Institut für Biologie & Biotechnologie der Pflanzen, Westfälische Wilhelms-Universität Münster, Germany
| | - Antje von Schaewen
- Institut für Biologie & Biotechnologie der Pflanzen, Westfälische Wilhelms-Universität Münster, Germany
- CONTACT Antje von Schaewen
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