1
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Guo B, Chen F, Liu G, Li W, Li W, Zhuang J, Zhang X, Wang L, Lei B, Hu C, Liu Y. Effects and mechanisms of proanthocyanidins-derived carbon dots on alleviating salt stress in rice by muti-omics analysis. Food Chem X 2024; 22:101422. [PMID: 38756474 PMCID: PMC11096822 DOI: 10.1016/j.fochx.2024.101422] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/16/2024] [Revised: 04/17/2024] [Accepted: 04/25/2024] [Indexed: 05/18/2024] Open
Abstract
Carbon dots (CDs) with different structures were prepared by electrolysis (PE-CDs) and hydrothermal (PH-CDs) methods using proanthocyanidins as precursors. The smaller size and lower zeta potential enabled the PE-CDs treated rice seedlings to exhibit greater resistance to salt stress. The fresh weight of rice seedlings under salt stress was significantly increased by spraying CDs every other day for two weeks. PE-CDs treated group exhibited a faster electron transport rate, and the SOD activity and flavonoid content were 2.5-fold and 0.23-fold higher than those of the salt stress-treated group. Furthermore, the metabolomics and transcriptomics analysis revealed that the PsaC gene of photosystem I was significantly up-regulated under PE-CDs treatment, which accelerated electron transfer in photosystem I. The up-regulation of BX1 and IGL genes encoding indole synthesis allowed rice to enhance stress tolerance through tryptophan and benzoxazine biosynthesis pathways. These findings offer help in purposefully synthesizing CDs and boosting food production.
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Affiliation(s)
- Baoyan Guo
- Key Laboratory for Biobased Materials and Energy of Ministry of Education/Guangdong Provincial Engineering Technology Research Center for Optical Agriculture, College of Materials and Energy, South China Agricultural University, Guangzhou 510642, China
| | - Fengqiong Chen
- Key Laboratory for Biobased Materials and Energy of Ministry of Education/Guangdong Provincial Engineering Technology Research Center for Optical Agriculture, College of Materials and Energy, South China Agricultural University, Guangzhou 510642, China
| | - Guo Liu
- College of Horticulture, South China Agricultural University, Guangzhou 510642, China
| | - Wentao Li
- Key Laboratory for Biobased Materials and Energy of Ministry of Education/Guangdong Provincial Engineering Technology Research Center for Optical Agriculture, College of Materials and Energy, South China Agricultural University, Guangzhou 510642, China
| | - Wei Li
- Key Laboratory for Biobased Materials and Energy of Ministry of Education/Guangdong Provincial Engineering Technology Research Center for Optical Agriculture, College of Materials and Energy, South China Agricultural University, Guangzhou 510642, China
| | - Jianle Zhuang
- Key Laboratory for Biobased Materials and Energy of Ministry of Education/Guangdong Provincial Engineering Technology Research Center for Optical Agriculture, College of Materials and Energy, South China Agricultural University, Guangzhou 510642, China
| | - Xuejie Zhang
- Key Laboratory for Biobased Materials and Energy of Ministry of Education/Guangdong Provincial Engineering Technology Research Center for Optical Agriculture, College of Materials and Energy, South China Agricultural University, Guangzhou 510642, China
| | - Lashuang Wang
- Guangdong Tianzi Natural Inc, Guangzhou 510642, China
| | - Bingfu Lei
- Key Laboratory for Biobased Materials and Energy of Ministry of Education/Guangdong Provincial Engineering Technology Research Center for Optical Agriculture, College of Materials and Energy, South China Agricultural University, Guangzhou 510642, China
| | - Chaofan Hu
- Key Laboratory for Biobased Materials and Energy of Ministry of Education/Guangdong Provincial Engineering Technology Research Center for Optical Agriculture, College of Materials and Energy, South China Agricultural University, Guangzhou 510642, China
| | - Yingliang Liu
- Key Laboratory for Biobased Materials and Energy of Ministry of Education/Guangdong Provincial Engineering Technology Research Center for Optical Agriculture, College of Materials and Energy, South China Agricultural University, Guangzhou 510642, China
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Zhang F, Rosental L, Ji B, Brotman Y, Dai M. Metabolite-mediated adaptation of crops to drought and the acquisition of tolerance. THE PLANT JOURNAL : FOR CELL AND MOLECULAR BIOLOGY 2024; 118:626-644. [PMID: 38241088 DOI: 10.1111/tpj.16634] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/09/2023] [Revised: 12/22/2023] [Accepted: 01/03/2024] [Indexed: 01/21/2024]
Abstract
Drought is one of the major and growing threats to agriculture productivity and food security. Metabolites are involved in the regulation of plant responses to various environmental stresses, including drought stress. The complex drought tolerance can be ascribed to several simple metabolic traits. These traits could then be used for detecting the genetic architecture of drought tolerance. Plant metabolomes show dynamic differences when drought occurs during different developmental stages or upon different levels of drought stress. Here, we reviewed the major and most recent findings regarding the metabolite-mediated plant drought response. Recent progress in the development of drought-tolerant agents is also discussed. We provide an updated schematic overview of metabolome-driven solutions for increasing crop drought tolerance and thereby addressing an impending agricultural challenge.
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Affiliation(s)
- Fei Zhang
- National Key Laboratory of Crop Improvement, Huazhong Agricultural University, Wuhan, 430070, China
- Hubei Hongshan Laboratory, Wuhan, 430070, China
| | - Leah Rosental
- Department of Life Sciences, Ben-Gurion University of the Negev, Beersheba, 8410501, Israel
| | - Boming Ji
- National Key Laboratory of Crop Improvement, Huazhong Agricultural University, Wuhan, 430070, China
- Hubei Hongshan Laboratory, Wuhan, 430070, China
| | - Yariv Brotman
- Department of Life Sciences, Ben-Gurion University of the Negev, Beersheba, 8410501, Israel
| | - Mingqiu Dai
- National Key Laboratory of Crop Improvement, Huazhong Agricultural University, Wuhan, 430070, China
- Hubei Hongshan Laboratory, Wuhan, 430070, China
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3
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Kong CH, Li Z, Li FL, Xia XX, Wang P. Chemically Mediated Plant-Plant Interactions: Allelopathy and Allelobiosis. PLANTS (BASEL, SWITZERLAND) 2024; 13:626. [PMID: 38475470 DOI: 10.3390/plants13050626] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/01/2024] [Revised: 02/20/2024] [Accepted: 02/22/2024] [Indexed: 03/14/2024]
Abstract
Plant-plant interactions are a central driver for plant coexistence and community assembly. Chemically mediated plant-plant interactions are represented by allelopathy and allelobiosis. Both allelopathy and allelobiosis are achieved through specialized metabolites (allelochemicals or signaling chemicals) produced and released from neighboring plants. Allelopathy exerts mostly negative effects on the establishment and growth of neighboring plants by allelochemicals, while allelobiosis provides plant neighbor detection and identity recognition mediated by signaling chemicals. Therefore, plants can chemically affect the performance of neighboring plants through the allelopathy and allelobiosis that frequently occur in plant-plant intra-specific and inter-specific interactions. Allelopathy and allelobiosis are two probably inseparable processes that occur together in plant-plant chemical interactions. Here, we comprehensively review allelopathy and allelobiosis in plant-plant interactions, including allelopathy and allelochemicals and their application for sustainable agriculture and forestry, allelobiosis and plant identity recognition, chemically mediated root-soil interactions and plant-soil feedback, and biosynthesis and the molecular mechanisms of allelochemicals and signaling chemicals. Altogether, these efforts provide the recent advancements in the wide field of allelopathy and allelobiosis, and new insights into the chemically mediated plant-plant interactions.
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Affiliation(s)
- Chui-Hua Kong
- College of Resources and Environmental Sciences, China Agricultural University, Beijing 100193, China
| | - Zheng Li
- College of Resources and Environmental Sciences, China Agricultural University, Beijing 100193, China
| | - Feng-Li Li
- College of Resources and Environmental Sciences, China Agricultural University, Beijing 100193, China
| | - Xin-Xin Xia
- College of Resources and Environmental Sciences, China Agricultural University, Beijing 100193, China
| | - Peng Wang
- Institute of Applied Ecology, Chinese Academy of Sciences, Shenyang 110016, China
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4
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Sun L, Li SD, Li Y, Wang L, Pu XM, Ge YP, Na Q, Li WH, Cheng XH. Population genetics provides insights into the important agronomic traits of Ganoderma cultivation varieties in China. Gene 2024; 893:147938. [PMID: 38381508 DOI: 10.1016/j.gene.2023.147938] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/03/2023] [Revised: 10/17/2023] [Accepted: 10/26/2023] [Indexed: 02/22/2024]
Abstract
This study aimed to investigate the species diversity and genetic differentiation of the genome of the main cultivated strains of Ganoderma in China. Population genomics analysis was conducted based on 150 cultivated strains of Ganoderma collected nationwide. The results indicated that the main species currently cultivated in China were Ganoderma sichuanense and Ganoderma lucidum, with a minor proportion of Ganoderma sessile, Ganoderma weberianum, Ganoderma sinense, Ganoderma gibbosum and Ganoderma australe. A total of 336,506 high-quality single nucleotide polymorphism (SNP) loci were obtained through population evolution analysis. The Fst values were calculated using a 5-kb sliding window, which ranged from 0.11 to 0.74. This suggests varying degrees of genetic differentiation between populations and genetic exchange among varieties. On this basis, the genes related to the stipe length, cap color and branch phenotypes of Ganoderma were excavated, and the region with the top 1% ZFst value region was used as a candidate region. A total of 137, 270 and 222 candidate genes were identified in the aforementioned 3 phenotypes, respectively. Gene annotation revealed that genes associated with stipe length were mainly related to cell division and differentiation, including proteins such as Nse4 protein and DIM1 protein. The genes related to Ganoderma red color were mainly related to the metabolism of tryptophan and flavonoids. The genes related to the branch were mainly related to cytokinin synthesis, ABC transporter and cytochrome P450. This study provided 150 valuable genome resequencing data in assessing the diversity and genetic differentiation of Ganoderma and laid a foundation for agronomic trait analysis and the development of new varieties of Ganoderma.
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Affiliation(s)
- Lei Sun
- Shandong Key Laboratory of Edible Mushroom Technology, School of Agriculture, Ludong University, Yantai 264025, China
| | - Shi-da Li
- Shandong Key Laboratory of Edible Mushroom Technology, School of Agriculture, Ludong University, Yantai 264025, China
| | - Yin Li
- Yantai Hospital of Traditional Chinese Medicine, Yantai 264013, China
| | - Lei Wang
- Shandong Key Laboratory of Edible Mushroom Technology, School of Agriculture, Ludong University, Yantai 264025, China
| | - Xiu-Min Pu
- Shandong Key Laboratory of Edible Mushroom Technology, School of Agriculture, Ludong University, Yantai 264025, China
| | - Yu-Peng Ge
- Shandong Key Laboratory of Edible Mushroom Technology, School of Agriculture, Ludong University, Yantai 264025, China
| | - Qin Na
- Shandong Key Laboratory of Edible Mushroom Technology, School of Agriculture, Ludong University, Yantai 264025, China
| | - Wei-Huan Li
- Shandong Key Laboratory of Edible Mushroom Technology, School of Agriculture, Ludong University, Yantai 264025, China.
| | - Xian-Hao Cheng
- Shandong Key Laboratory of Edible Mushroom Technology, School of Agriculture, Ludong University, Yantai 264025, China.
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Liu J, Li L, Xiong Z, Robert CAM, Li B, He S, Chen W, Bi J, Zhai G, Guo S, Zhang H, Li J, Zhou S, Zhang X, Song CP. Trade-offs between the accumulation of cuticular wax and jasmonic acid-mediated herbivory resistance in maize. JOURNAL OF INTEGRATIVE PLANT BIOLOGY 2024; 66:143-159. [PMID: 37975264 DOI: 10.1111/jipb.13586] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/19/2023] [Accepted: 11/14/2023] [Indexed: 11/19/2023]
Abstract
Plants have evolved complex physical and chemical defense systems that allow them to withstand herbivory infestation. Composed of a complex mixture of very-long-chain fatty acids (VLCFAs) and their derivatives, cuticular wax constitutes the first physical line of defense against herbivores. Here, we report the function of Glossy 8 (ZmGL8), which encodes a 3-ketoacyl reductase belonging to the fatty acid elongase complex, in orchestrating wax production and jasmonic acid (JA)-mediated defenses against herbivores in maize (Zea mays). The mutation of GL8 enhanced chemical defenses by activating the JA-dependent pathway. We observed a trade-off between wax accumulation and JA levels across maize glossy mutants and 24 globally collected maize inbred lines. In addition, we demonstrated that mutants defective in cuticular wax biosynthesis in Arabidopsis thaliana and maize exhibit enhanced chemical defenses. Comprehensive transcriptomic and lipidomic analyses indicated that the gl8 mutant confers chemical resistance to herbivores by remodeling VLCFA-related lipid metabolism and subsequent JA biosynthesis and signaling. These results suggest that VLCFA-related lipid metabolism has a critical role in regulating the trade-offs between cuticular wax and JA-mediated chemical defenses.
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Affiliation(s)
- Jiong Liu
- School of Life Sciences, Henan University, Kaifeng, 475004, China
- State Key Laboratory of Crop Stress Adaptation and Improvement, Henan University, Kaifeng, 475004, China
| | - Lu Li
- School of Life Sciences, Henan University, Kaifeng, 475004, China
- State Key Laboratory of Cotton Bio-Breeding and Integrated Utilization, Henan University, Kaifeng, 475004, China
| | - Zhilong Xiong
- School of Life Sciences, Henan University, Kaifeng, 475004, China
- State Key Laboratory of Cotton Bio-Breeding and Integrated Utilization, Henan University, Kaifeng, 475004, China
- Sanya Institute of Henan University, Sanya, 572025, China
| | | | - Baozhu Li
- School of Life Sciences, Henan University, Kaifeng, 475004, China
- State Key Laboratory of Crop Stress Adaptation and Improvement, Henan University, Kaifeng, 475004, China
- Sanya Institute of Henan University, Sanya, 572025, China
| | - Shan He
- School of Life Sciences, Henan University, Kaifeng, 475004, China
- State Key Laboratory of Cotton Bio-Breeding and Integrated Utilization, Henan University, Kaifeng, 475004, China
| | - Wenjie Chen
- School of Life Sciences, Henan University, Kaifeng, 475004, China
- State Key Laboratory of Cotton Bio-Breeding and Integrated Utilization, Henan University, Kaifeng, 475004, China
| | - Jiasheng Bi
- School of Life Sciences, Henan University, Kaifeng, 475004, China
- State Key Laboratory of Cotton Bio-Breeding and Integrated Utilization, Henan University, Kaifeng, 475004, China
| | - Guanqing Zhai
- School of Life Sciences, Henan University, Kaifeng, 475004, China
- State Key Laboratory of Cotton Bio-Breeding and Integrated Utilization, Henan University, Kaifeng, 475004, China
- Sanya Institute of Henan University, Sanya, 572025, China
| | - Siyi Guo
- School of Life Sciences, Henan University, Kaifeng, 475004, China
- State Key Laboratory of Crop Stress Adaptation and Improvement, Henan University, Kaifeng, 475004, China
- Sanya Institute of Henan University, Sanya, 572025, China
| | - Hui Zhang
- School of Life Sciences, Henan University, Kaifeng, 475004, China
- State Key Laboratory of Crop Stress Adaptation and Improvement, Henan University, Kaifeng, 475004, China
| | - Jieping Li
- School of Life Sciences, Henan University, Kaifeng, 475004, China
- State Key Laboratory of Crop Stress Adaptation and Improvement, Henan University, Kaifeng, 475004, China
| | - Shutang Zhou
- School of Life Sciences, Henan University, Kaifeng, 475004, China
- State Key Laboratory of Cotton Bio-Breeding and Integrated Utilization, Henan University, Kaifeng, 475004, China
- Sanya Institute of Henan University, Sanya, 572025, China
| | - Xi Zhang
- School of Life Sciences, Henan University, Kaifeng, 475004, China
- State Key Laboratory of Cotton Bio-Breeding and Integrated Utilization, Henan University, Kaifeng, 475004, China
- Sanya Institute of Henan University, Sanya, 572025, China
| | - Chun-Peng Song
- School of Life Sciences, Henan University, Kaifeng, 475004, China
- State Key Laboratory of Crop Stress Adaptation and Improvement, Henan University, Kaifeng, 475004, China
- Sanya Institute of Henan University, Sanya, 572025, China
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6
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Huang J, Li J, Chen H, Shen C, Wen Y. Phytotoxicity alleviation of imazethapyr to non-target plant wheat: active regulation between auxin and DIMBOA. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2023; 30:116004-116017. [PMID: 37897577 DOI: 10.1007/s11356-023-30608-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/25/2023] [Accepted: 10/18/2023] [Indexed: 10/30/2023]
Abstract
Effectively controlling target organisms while reducing the adverse effects of pesticides on non-target organisms is a crucial scientific inquiry and challenge in pesticide ecotoxicology research. Here, we studied the alleviation of herbicide (R)-imazethapyr [(R)-IM] to non-target plant wheat by active regulation between auxin and secondary metabolite 2,4-dihydroxy-7-methoxy-2H-1,4-benzoxazine-3(4H)-one (DIMBOA). We found (R)-IM reduced 32.4% auxin content in wheat leaves and induced 40.7% DIMBOA accumulation compared to the control group, which effortlessly disrupted the balance between wheat growth and defense. Transcriptomic results indicated that restoration of the auxin level in plants promoted the up-regulation of growth-related genes and the accumulation of DIMBOA up-regulated the expression of defense-related genes. Auxin and DIMBOA alleviated herbicide stress primarily through effects in the two directions of wheat growth and defense, respectively. Additionally, as a common precursor of auxin and DIMBOA, indole adopted a combined growth and defense strategy in response to (R)-IM toxicity, i.e., restoring growth development and enhancing the defense system. Future regulation of auxin and DIMBOA levels in plants may be possible through appropriate methods, thus regulating the plant growth-defense balance under herbicide stress. Our insight into the interference mechanism of herbicides to the plant growth-defense system will facilitate the design of improved strategies for herbicide detoxification.
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Affiliation(s)
- Jinye Huang
- MOE Key Laboratory of Environmental Remediation & Ecosystem Health, College of Environmental and Resource Sciences, Zhejiang University, Hangzhou, 310058, China
| | - Jun Li
- MOE Key Laboratory of Environmental Remediation & Ecosystem Health, College of Environmental and Resource Sciences, Zhejiang University, Hangzhou, 310058, China
| | - Hui Chen
- Ningbo Key Laboratory of Agricultural Germplasm Resources Mining and Environmental Regulation, College of Science and Technology, Ningbo University, Cixi, 315300, China
| | - Chensi Shen
- College of Environmental Science and Engineering, Donghua University, Shanghai, 201620, China
| | - Yuezhong Wen
- MOE Key Laboratory of Environmental Remediation & Ecosystem Health, College of Environmental and Resource Sciences, Zhejiang University, Hangzhou, 310058, China.
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7
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Thoenen L, Giroud C, Kreuzer M, Waelchli J, Gfeller V, Deslandes-Hérold G, Mateo P, Robert CAM, Ahrens CH, Rubio-Somoza I, Bruggmann R, Erb M, Schlaeppi K. Bacterial tolerance to host-exuded specialized metabolites structures the maize root microbiome. Proc Natl Acad Sci U S A 2023; 120:e2310134120. [PMID: 37878725 PMCID: PMC10622871 DOI: 10.1073/pnas.2310134120] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/15/2023] [Accepted: 09/21/2023] [Indexed: 10/27/2023] Open
Abstract
Plants exude specialized metabolites from their roots, and these compounds are known to structure the root microbiome. However, the underlying mechanisms are poorly understood. We established a representative collection of maize root bacteria and tested their tolerance against benzoxazinoids (BXs), the dominant specialized and bioactive metabolites in the root exudates of maize plants. In vitro experiments revealed that BXs inhibited bacterial growth in a strain- and compound-dependent manner. Tolerance against these selective antimicrobial compounds depended on bacterial cell wall structure. Further, we found that native root bacteria isolated from maize tolerated the BXs better compared to nonhost Arabidopsis bacteria. This finding suggests the adaptation of the root bacteria to the specialized metabolites of their host plant. Bacterial tolerance to 6-methoxy-benzoxazolin-2-one (MBOA), the most abundant and selective antimicrobial metabolite in the maize rhizosphere, correlated significantly with the abundance of these bacteria on BX-exuding maize roots. Thus, strain-dependent tolerance to BXs largely explained the abundance pattern of bacteria on maize roots. Abundant bacteria generally tolerated MBOA, while low abundant root microbiome members were sensitive to this compound. Our findings reveal that tolerance to plant specialized metabolites is an important competence determinant for root colonization. We propose that bacterial tolerance to root-derived antimicrobial compounds is an underlying mechanism determining the structure of host-specific microbial communities.
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Affiliation(s)
- Lisa Thoenen
- Institute of Plant Sciences, University of Bern, Bern3013, Switzerland
- Department of Environmental Sciences, University of Basel, Basel4056, Switzerland
| | - Caitlin Giroud
- Department of Environmental Sciences, University of Basel, Basel4056, Switzerland
| | - Marco Kreuzer
- Interfaculty Bioinformatics Unit, University of Bern, Bern3012, Switzerland
| | - Jan Waelchli
- Department of Environmental Sciences, University of Basel, Basel4056, Switzerland
| | - Valentin Gfeller
- Institute of Plant Sciences, University of Bern, Bern3013, Switzerland
| | | | - Pierre Mateo
- Institute of Plant Sciences, University of Bern, Bern3013, Switzerland
| | | | - Christian H. Ahrens
- Method Development and Analytics, Group Molecular Ecology, Agroscope, Zürich8046, Switzerland
| | - Ignacio Rubio-Somoza
- Molecular Reprogramming and Evolution Lab, Centre for Research in Agricultural Genomics, Barcelona08193, Spain
| | - Rémy Bruggmann
- Interfaculty Bioinformatics Unit, University of Bern, Bern3012, Switzerland
| | - Matthias Erb
- Institute of Plant Sciences, University of Bern, Bern3013, Switzerland
| | - Klaus Schlaeppi
- Institute of Plant Sciences, University of Bern, Bern3013, Switzerland
- Department of Environmental Sciences, University of Basel, Basel4056, Switzerland
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8
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Li M, Tadfie H, Darnell CG, Holland CK. Biochemical investigation of the tryptophan biosynthetic enzyme anthranilate phosphoribosyltransferase in plants. J Biol Chem 2023; 299:105197. [PMID: 37659723 PMCID: PMC10520873 DOI: 10.1016/j.jbc.2023.105197] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/08/2023] [Revised: 08/24/2023] [Accepted: 08/29/2023] [Indexed: 09/04/2023] Open
Abstract
While mammals require the essential amino acid tryptophan (Trp) in their diet, plants and microorganisms synthesize Trp de novo. The five-step Trp pathway starts with the shikimate pathway product, chorismate. Chorismate is converted to the aromatic compound anthranilate, which is then conjugated to a phosphoribosyl sugar in the second step by anthranilate phosphoribosyltransferase (PAT1). As a single-copy gene in plants, all fixed carbon flux to indole and Trp for protein synthesis, specialized metabolism, and auxin hormone biosynthesis proceeds through PAT1. While bacterial PAT1s have been studied extensively, plant PAT1s have escaped biochemical characterization. Using a structure model, we identified putative active site residues that were variable across plants and kinetically characterized six PAT1s (Arabidopsis thaliana (thale cress), Citrus sinensis (sweet orange), Pistacia vera (pistachio), Juglans regia (English walnut), Selaginella moellendorffii (spike moss), and Physcomitrium patens (spreading earth-moss)). We probed the catalytic efficiency, substrate promiscuity, and regulation of these six enzymes and found that the C. sinensis PAT1 is highly specific for its cognate substrate, anthranilate. Investigations of site-directed mutants of the A. thaliana PAT1 uncovered an active site residue that contributes to promiscuity. While Trp inhibits bacterial PAT1 enzymes, the six plant PAT1s that we tested were not modulated by Trp. Instead, the P. patens PAT1 was inhibited by tyrosine, and the S. moellendorffii PAT1 was inhibited by phenylalanine. This structure-informed biochemical examination identified variations in activity, efficiency, specificity, and enzyme-level regulation across PAT1s from evolutionarily diverse plants.
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Affiliation(s)
- Miriam Li
- Department of Biology, Williams College, Williamstown, Massachusetts, USA
| | - Hisham Tadfie
- Department of Biology, Williams College, Williamstown, Massachusetts, USA
| | - Cameron G Darnell
- Department of Biology, Williams College, Williamstown, Massachusetts, USA
| | - Cynthia K Holland
- Department of Biology, Williams College, Williamstown, Massachusetts, USA.
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9
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Escobar-Bravo R, Lin PA, Waterman JM, Erb M. Dynamic environmental interactions shaped by vegetative plant volatiles. Nat Prod Rep 2023; 40:840-865. [PMID: 36727645 PMCID: PMC10132087 DOI: 10.1039/d2np00061j] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/06/2022] [Indexed: 02/03/2023]
Abstract
Covering: up to November 2022Plants shape terrestrial ecosystems through physical and chemical interactions. Plant-derived volatile organic compounds in particular influence the behavior and performance of other organisms. In this review, we discuss how vegetative plant volatiles derived from leaves, stems and roots are produced and released into the environment, how their production and release is modified by abiotic and biotic factors, and how they influence other organisms. Vegetative plant volatiles are derived from different biosynthesis and degradation pathways and are released via distinct routes. Both biosynthesis and release are regulated by other organisms as well as abiotic factors. In turn, vegetative plant volatiles modify the physiology and the behavior of a wide range of organisms, from microbes to mammals. Several concepts and frameworks can help to explain and predict the evolution and ecology of vegetative plant volatile emission patterns of specific pathways: multifunctionality of specialized metabolites, chemical communication displays and the information arms race, and volatile physiochemistry. We discuss how these frameworks can be leveraged to understand the evolution and expression patterns of vegetative plant volatiles. The multifaceted roles of vegetative plant volatiles provide fertile grounds to understand ecosystem dynamics and harness their power for sustainable agriculture.
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Affiliation(s)
| | - Po-An Lin
- Department of Entomology, National Taiwan University, Taipei, Taiwan
| | - Jamie M Waterman
- Institute of Plant Sciences, University of Bern, Bern, Switzerland.
| | - Matthias Erb
- Institute of Plant Sciences, University of Bern, Bern, Switzerland.
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10
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Abu-Zaitoon YM, Al-Ramamneh EADM, Al Tawaha AR, Alnaimat SM, Almomani FA. Comparative Coexpression Analysis of Indole Synthase and Tryptophan Synthase A Reveals the Independent Production of Auxin via the Cytosolic Free Indole. PLANTS (BASEL, SWITZERLAND) 2023; 12:1687. [PMID: 37111910 PMCID: PMC10142997 DOI: 10.3390/plants12081687] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 03/01/2023] [Revised: 03/22/2023] [Accepted: 04/10/2023] [Indexed: 06/19/2023]
Abstract
Indole synthase (INS), a homologous cytosolic enzyme of the plastidal tryptophan synthase A (TSA), has been reported as the first enzyme in the tryptophan-independent pathway of auxin synthesis. This suggestion was challenged as INS or its free indole product may interact with tryptophan synthase B (TSB) and, therefore, with the tryptophan-dependent pathway. Thus, the main aim of this research was to find out whether INS is involved in the tryptophan-dependent or independent pathway. The gene coexpression approach is widely recognized as an efficient tool to uncover functionally related genes. Coexpression data presented here were supported by both RNAseq and microarray platforms and, hence, considered reliable. Coexpression meta-analyses of Arabidopsis genome was implemented to compare between the coexpression of TSA and INS with all genes involved in the production of tryptophan via the chorismate pathway. Tryptophan synthase A was found to be coexpressed strongly with TSB1/2, anthranilate synthase A1/B1, phosphoribosyl anthranilate transferase1, as well as indole-3-glycerol phosphate synthase1. However, INS was not found to be coexpressed with any target genes suggesting that it may exclusively and independently be involved in the tryptophan-independent pathway. Additionally, annotation of examined genes as ubiquitous or differentially expressed were described and subunits-encoded genes available for the assembly of tryptophan and anthranilate synthase complex were suggested. The most probable TSB subunits expected to interact with TSA is TSB1 then TSB2. Whereas TSB3 is only used under limited hormone conditions to assemble tryptophan synthase complex, putative TSB4 is not expected to be involved in the plastidial synthesis of tryptophan in Arabidopsis.
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Affiliation(s)
- Yousef M. Abu-Zaitoon
- Department of Biology, Faculty of science, Al-Hussein Bin Talal University, Maan 71111, Jordan; (A.R.A.T.)
| | | | - Abdel Rahman Al Tawaha
- Department of Biology, Faculty of science, Al-Hussein Bin Talal University, Maan 71111, Jordan; (A.R.A.T.)
| | - Sulaiman M. Alnaimat
- Department of Biology, Faculty of science, Al-Hussein Bin Talal University, Maan 71111, Jordan; (A.R.A.T.)
| | - Fouad A. Almomani
- Department of Applied Biology, Jordan University of Science and Technology, Irbid 22110, Jordan
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11
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Ma C, Li R, Sun Y, Zhang M, Li S, Xu Y, Song J, Li J, Qi J, Wang L, Wu J. ZmMYC2s play important roles in maize responses to simulated herbivory and jasmonate. JOURNAL OF INTEGRATIVE PLANT BIOLOGY 2023; 65:1041-1058. [PMID: 36349965 DOI: 10.1111/jipb.13404] [Citation(s) in RCA: 4] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/24/2022] [Accepted: 11/07/2022] [Indexed: 06/16/2023]
Abstract
Both herbivory and jasmonic acid (JA) activate the biosynthesis of defensive metabolites in maize, but the mechanism underlying this remains unclear. We generated maize mutants in which ZmMYC2a and ZmMYC2b, two transcription factor genes important in JA signaling, were individually or both knocked out. Genetic and biochemical analyses were used to elucidate the functions of ZmMYC2 proteins in the maize response to simulated herbivory and JA. Compared with the wild-type (WT) maize, the double mutant myc2ab was highly susceptible to insects, and the levels of benzoxazinoids and volatile terpenes, and the levels of their biosynthesis gene transcripts, were much lower in the mutants than in the WT maize after simulated insect feeding or JA treatment. Moreover, ZmMYC2a and ZmMYC2b played a redundant role in maize resistance to insects and JA signaling. Transcriptome and Cleavage Under Targets and Tagmentation-Sequencing (CUT&Tag-Seq) analysis indicated that ZmMYC2s physically targeted 60% of the JA-responsive genes, even though only 33% of these genes were transcriptionally ZmMYC2-dependent. Importantly, CUT&Tag-Seq and dual luciferase assays revealed that ZmMYC2s transactivate the benzoxazinoid and volatile terpene biosynthesis genes IGPS1/3, BX10/11/12/14, and TPS10/2/3/4/5/8 by directly binding to their promoters. Furthermore, several transcription factors physically targeted by ZmMYC2s were identified, and these are likely to function in the regulation of benzoxazinoid biosynthesis. This work reveals the transcriptional regulatory landscapes of both JA signaling and ZmMYC2s in maize and provides comprehensive mechanistic insight into how JA signaling modulates defenses in maize responses to herbivory through ZmMYC2s.
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Affiliation(s)
- Canrong Ma
- Department of Economic Plants and Biotechnology, Yunnan Key Laboratory for Wild Plant Resources, Kunming Institute of Botany, the Chinese Academy of Sciences, Kunming, 650201, China
- Chinese Academy of Science Center for Excellence in Biotic Interactions, University of Chinese Academy of Sciences, Beijing, 100049, China
| | - Ruoyue Li
- Department of Economic Plants and Biotechnology, Yunnan Key Laboratory for Wild Plant Resources, Kunming Institute of Botany, the Chinese Academy of Sciences, Kunming, 650201, China
| | - Yan Sun
- Department of Economic Plants and Biotechnology, Yunnan Key Laboratory for Wild Plant Resources, Kunming Institute of Botany, the Chinese Academy of Sciences, Kunming, 650201, China
| | - Mou Zhang
- Department of Economic Plants and Biotechnology, Yunnan Key Laboratory for Wild Plant Resources, Kunming Institute of Botany, the Chinese Academy of Sciences, Kunming, 650201, China
| | - Sen Li
- Department of Economic Plants and Biotechnology, Yunnan Key Laboratory for Wild Plant Resources, Kunming Institute of Botany, the Chinese Academy of Sciences, Kunming, 650201, China
| | - Yuxing Xu
- Department of Economic Plants and Biotechnology, Yunnan Key Laboratory for Wild Plant Resources, Kunming Institute of Botany, the Chinese Academy of Sciences, Kunming, 650201, China
- Chinese Academy of Science Center for Excellence in Biotic Interactions, University of Chinese Academy of Sciences, Beijing, 100049, China
| | - Juan Song
- Department of Economic Plants and Biotechnology, Yunnan Key Laboratory for Wild Plant Resources, Kunming Institute of Botany, the Chinese Academy of Sciences, Kunming, 650201, China
- Chinese Academy of Science Center for Excellence in Biotic Interactions, University of Chinese Academy of Sciences, Beijing, 100049, China
| | - Jing Li
- Department of Economic Plants and Biotechnology, Yunnan Key Laboratory for Wild Plant Resources, Kunming Institute of Botany, the Chinese Academy of Sciences, Kunming, 650201, China
- Chinese Academy of Science Center for Excellence in Biotic Interactions, University of Chinese Academy of Sciences, Beijing, 100049, China
| | - Jinfeng Qi
- Department of Economic Plants and Biotechnology, Yunnan Key Laboratory for Wild Plant Resources, Kunming Institute of Botany, the Chinese Academy of Sciences, Kunming, 650201, China
- Chinese Academy of Science Center for Excellence in Biotic Interactions, University of Chinese Academy of Sciences, Beijing, 100049, China
| | - Lei Wang
- Department of Economic Plants and Biotechnology, Yunnan Key Laboratory for Wild Plant Resources, Kunming Institute of Botany, the Chinese Academy of Sciences, Kunming, 650201, China
- Chinese Academy of Science Center for Excellence in Biotic Interactions, University of Chinese Academy of Sciences, Beijing, 100049, China
| | - Jianqiang Wu
- Department of Economic Plants and Biotechnology, Yunnan Key Laboratory for Wild Plant Resources, Kunming Institute of Botany, the Chinese Academy of Sciences, Kunming, 650201, China
- Chinese Academy of Science Center for Excellence in Biotic Interactions, University of Chinese Academy of Sciences, Beijing, 100049, China
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12
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P V, T N, S S, R S, S J, Christopher JG. Streptomyces sp. VITGV100: An endophyte from Lycopersicon esculentum as new source of indole type compounds. BIOCHEM SYST ECOL 2022. [DOI: 10.1016/j.bse.2022.104523] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
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13
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Kumar A, Kanak KR, Arunachalam A, Dass RS, Lakshmi PTV. Comparative transcriptome profiling and weighted gene co-expression network analysis to identify core genes in maize ( Zea mays L.) silks infected by multiple fungi. FRONTIERS IN PLANT SCIENCE 2022; 13:985396. [PMID: 36388593 PMCID: PMC9647128 DOI: 10.3389/fpls.2022.985396] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 07/18/2022] [Accepted: 09/23/2022] [Indexed: 06/16/2023]
Abstract
Maize (Zea mays L.) is the third most popular Poaceae crop after wheat and rice and used in feed and pharmaceutical sectors. The maize silk contains bioactive components explored by traditional Chinese herbal medicine for various pharmacological activities. However, Fusarium graminearum, Fusarium verticillioides, Trichoderma atroviride, and Ustilago maydis can infect the maize, produce mycotoxins, hamper the quantity and quality of silk production, and further harm the primary consumer's health. However, the defense mechanism is not fully understood in multiple fungal infections in the silk of Z. mays. In this study, we applied bioinformatics approaches to use the publicly available transcriptome data of Z. mays silk affected by multiple fungal flora to identify core genes involved in combatting disease response. Differentially expressed genes (DEGs) were identified among intra- and inter-transcriptome data sets of control versus infected Z. mays silks. Upon further comparison between up- and downregulated genes within the control of datasets, 4,519 upregulated and 5,125 downregulated genes were found. The DEGs have been compared with genes in the modules of weighted gene co-expression network analysis to relevant specific traits towards identifying core genes. The expression pattern of transcription factors, carbohydrate-active enzymes (CAZyme), and resistance genes was analyzed. The present investigation is supportive of our findings that the gene ontology, immunity stimulus, and resistance genes are upregulated, but physical and metabolic processes such as cell wall organizations and pectin synthesis were downregulated respectively. Our results are indicative that terpene synthase TPS6 and TPS11 are involved in the defense mechanism against fungal infections in maize silk.
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Affiliation(s)
- Amrendra Kumar
- Phytomatics Lab, Department of Bioinformatics, School of Life Sciences, Pondicherry University, Pondicherry, India
| | - Kanak Raj Kanak
- Fungal Genetics and Mycotoxicology Laboratory, Department of Microbiology, School of Life Sciences, Pondicherry University, Puducherry, India
| | - Annamalai Arunachalam
- Postgraduate and Research Department of Botany, Arignar Anna Government Arts College, Villupuram, Tamil Nadu, India
| | - Regina Sharmila Dass
- Fungal Genetics and Mycotoxicology Laboratory, Department of Microbiology, School of Life Sciences, Pondicherry University, Puducherry, India
| | - P. T. V. Lakshmi
- Phytomatics Lab, Department of Bioinformatics, School of Life Sciences, Pondicherry University, Pondicherry, India
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14
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Stahl E. New insights into the transcriptional regulation of benzoxazinoid biosynthesis in wheat. JOURNAL OF EXPERIMENTAL BOTANY 2022; 73:5358-5360. [PMID: 36095661 PMCID: PMC9467650 DOI: 10.1093/jxb/erac244] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/30/2022] [Accepted: 05/30/2022] [Indexed: 05/31/2023]
Abstract
This article comments on: Batyrshina ZS, Shavit R, Yaakov B, Bocobza S, Tzin V. 2022. The transcription factor gene TaMYB31 regulates the benzoxazinoid biosynthetic pathway in wheat. Journal of Experimental Botany73, 5634-5649. Benzoxazinoids (BXDs) are abundant indole-derived specialized metabolites in several monocot crop species, such as wheat, maize, and rye. They function in plant immunity against herbivorous arthropods and fungal pathogens, but also as iron chelators, in metal tolerance, and as allelochemicals. Although BXD biosynthetic pathways have been studied extensively and are well described, information about the transcriptional regulation of BXD biosynthesis is scarce. In the current issue of JXB, Batyrshina et al. (2022) identified the transcription factor gene TaMYB31 in the tetraploid wheat Triticum turgidum and verified its function as a component of BXD metabolism in the hexaploid wheat Triticum aestivum, where it regulates constitutive and stress-inducible BXD biosynthesis.
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15
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Batyrshina ZS, Shavit R, Yaakov B, Bocobza S, Tzin V. The transcription factor TaMYB31 regulates the benzoxazinoid biosynthetic pathway in wheat. JOURNAL OF EXPERIMENTAL BOTANY 2022; 73:5634-5649. [PMID: 35554544 PMCID: PMC9467655 DOI: 10.1093/jxb/erac204] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/06/2021] [Accepted: 05/10/2022] [Indexed: 05/13/2023]
Abstract
Benzoxazinoids are specialized metabolites that are highly abundant in staple crops, such as maize and wheat. Although their biosynthesis has been studied for several decades, the regulatory mechanisms of the benzoxazinoid pathway remain unknown. Here, we report that the wheat transcription factor MYB31 functions as a regulator of benzoxazinoid biosynthesis genes. A transcriptomic analysis of tetraploid wheat (Triticum turgidum) tissue revealed the up-regulation of two TtMYB31 homoeologous genes upon aphid and caterpillar feeding. TaMYB31 gene silencing in the hexaploid wheat Triticum aestivum significantly reduced benzoxazinoid metabolite levels and led to susceptibility to herbivores. Thus, aphid progeny production, caterpillar body weight gain, and spider mite oviposition significantly increased in TaMYB31-silenced plants. A comprehensive transcriptomic analysis of hexaploid wheat revealed that the TaMYB31 gene is co-expressed with the target benzoxazinoid-encoded Bx genes under several biotic and environmental conditions. Therefore, we analyzed the effect of abiotic stresses on benzoxazinoid levels and discovered a strong accumulation of these compounds in the leaves. The results of a dual fluorescence assay indicated that TaMYB31 binds to the Bx1 and Bx4 gene promoters, thereby activating the transcription of genes involved in the benzoxazinoid pathway. Our finding is the first report of the transcriptional regulation mechanism of the benzoxazinoid pathway in wheat.
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Affiliation(s)
- Zhaniya S Batyrshina
- French Associates Institute for Agriculture and Biotechnology of Drylands, Jacob Blaustein Institutes for Desert Research, Ben-Gurion University of the Negev, Midreshet Ben Gurion, 8499000, Israel
| | - Reut Shavit
- French Associates Institute for Agriculture and Biotechnology of Drylands, Jacob Blaustein Institutes for Desert Research, Ben-Gurion University of the Negev, Midreshet Ben Gurion, 8499000, Israel
| | - Beery Yaakov
- French Associates Institute for Agriculture and Biotechnology of Drylands, Jacob Blaustein Institutes for Desert Research, Ben-Gurion University of the Negev, Midreshet Ben Gurion, 8499000, Israel
| | - Samuel Bocobza
- Department of Ornamentals and Biotechnology, Institute of Plant Sciences, Agricultural Research Organization, The Volcani Center, 68 Hamakabim Road, 7528809, Rishon LeZion, Israel
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16
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Evidence from Co-expression Analysis for the Involvement of Amidase and INS in the Tryptophan-Independent Pathway of IAA Synthesis in Arabidopsis. Appl Biochem Biotechnol 2022; 194:4673-4682. [PMID: 35802240 DOI: 10.1007/s12010-022-04047-8] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 06/26/2022] [Indexed: 12/16/2022]
Abstract
The reverse genetic approach has uncovered indole synthase (INS) as the first enzyme in the tryptophan (trp)-independent pathway of IAA synthesis. The importance of INS was reevaluated suggesting it may interact with tryptophan synthase B (TSB) and therefore involved in the trp-dependent pathway. Thus, the main aim of this study was to clarify the route of INS through the analysis of Arabidopsis genome. Analysis of the top 2000 co-expression gene lists in general and specific conditions shows that TSA is strongly positively co-expressed with TSB in general, hormone, and abiotic conditions with mutual ranks of 89, 38, and 180 respectively. Moreover, TSA is positively correlated with TSB (0.291). However, INS was not found in any of these coexpressed gene lists and negatively correlated with TSB (- 0.046) suggesting unambiguously that these two routes are separately and independently operated. So far, the remaining steps in the INS pathway have remained elusive. Among all enzymes reported to have a role in IAA synthesis, amidase was found to strongly positively co-expressed with INS in general and light conditions with mutual ranks of 116 and 141 respectively. Additionally, amidase1 was found to positively correlate with INS (0.297) and negatively coexpressed with TSB concluding that amidase may exclusively involve in the trp-independent pathway.
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17
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Vergata C, Yousefi S, Buti M, Vestrucci F, Gholami M, Sarikhani H, Salami SA, Martinelli F. Meta-analysis of transcriptomic responses to cold stress in plants. FUNCTIONAL PLANT BIOLOGY : FPB 2022; 49:704-724. [PMID: 35379384 DOI: 10.1071/fp21230] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/06/2021] [Accepted: 03/10/2022] [Indexed: 06/14/2023]
Abstract
Transcriptomic analyses are needful tools to gain insight into the molecular mechanisms underlying plant responses to abiotic stresses. The aim of this study was to identify key genes differentially regulated in response to chilling stress in various plant species with different levels of tolerance to low temperatures. A meta-analysis was performed using the RNA-Seq data of published studies whose experimental conditions were comparable. The results confirmed the importance of ethylene in the hormonal cross-talk modulating the defensive responses against chilling stress, especially in sensitive species. The transcriptomic activity of five Ethylene Response Factors genes and a REDOX Responsive Transcription Factor 1 involved in hormone-related pathways belonging to ethylene metabolism and signal transduction were induced. Transcription activity of two genes encoding for heat shock factors was enhanced, together with various genes associated with developmental processes. Several transcription factor families showed to be commonly induced between different plant species. Protein-protein interaction networks highlighted the role of the photosystems I and II, as well as genes encoding for HSF and WRKY transcription factors. A model of gene regulatory network underlying plant responses to chilling stress was developed, allowing the delivery of new candidate genes for genetic improvement of crops towards low temperatures tolerance.
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Affiliation(s)
- Chiara Vergata
- Department of Biology, University of Florence, Firenze, Italy
| | - Sanaz Yousefi
- Department of Horticultural Science, Bu-Ali Sina University, Hamedan, Iran
| | - Matteo Buti
- Department of Agriculture, Food, Environment and Forestry (DAGRI), University of Florence, Firenze, Italy
| | | | - Mansour Gholami
- Department of Horticultural Science, Bu-Ali Sina University, Hamedan, Iran
| | - Hassan Sarikhani
- Department of Horticultural Science, Bu-Ali Sina University, Hamedan, Iran
| | - Seyed Alireza Salami
- Department of Horticultural Sciences, Faculty of Agriculture and Natural Resources, University of Tehran, Tehran, Iran
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18
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Ji M, Bui H, Ramirez RA, Clark RM. Concerted cis and trans effects underpin heightened defense gene expression in multi-herbivore-resistant maize lines. THE PLANT JOURNAL : FOR CELL AND MOLECULAR BIOLOGY 2022; 111:508-528. [PMID: 35575017 DOI: 10.1111/tpj.15812] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/19/2021] [Revised: 04/04/2022] [Accepted: 05/09/2022] [Indexed: 06/15/2023]
Abstract
In maize (Zea mays ssp. mays), agriculturally damaging herbivores include lepidopteran insects, such as the European corn borer (Ostrinia nubilalis), and distantly related arthropods, like the two-spotted spider mite (Tetranychus urticae). A small number of maize lines, including B96 and B75, are highly resistant to both herbivores, and B96 is also resistant to thrips. Using T. urticae as a representative pest that causes significant leaf tissue damage, we examined the gene expression responses of these lines to herbivory in comparison with each other and with the susceptible line B73. Upon herbivory, the most resistant line, B96, showed the strongest gene expression response, with a dramatic upregulation of genes associated with jasmonic acid biosynthesis and signaling, as well as the biosynthesis of specialized herbivore deterrent compounds, such as death acids and benzoxazinoids. Extending this work with allele-specific expression analyses in F1 hybrids, we inferred that the concerted upregulation of many defense genes, including the majority of benzoxazinoid biosynthetic genes in B96, as compared with B73, for the herbivore treatment, resulted from an assemblage of trans control and multiple cis effects acting with similar directionality on gene expression. Further, at the level of individual and potentially rate limiting genes in several major defense pathways, cis and trans effects acted in a reinforcing manner to result in exceptionally high expression in B96. Our study provides a comprehensive resource of cis elements for maize lines important in breeding efforts for herbivore resistance, and reveals potential genetic underpinnings of the origins of multi-herbivore resistance in plant populations.
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Affiliation(s)
- Meiyuan Ji
- School of Biological Sciences, University of Utah, 257 South 1400 East Rm 201, Salt Lake City, UT, 84112, USA
| | - Huyen Bui
- School of Biological Sciences, University of Utah, 257 South 1400 East Rm 201, Salt Lake City, UT, 84112, USA
| | - Ricardo A Ramirez
- Department of Biology, Utah State University, 5305 Old Main Hill, Logan, UT, 84332, USA
| | - Richard M Clark
- School of Biological Sciences, University of Utah, 257 South 1400 East Rm 201, Salt Lake City, UT, 84112, USA
- Henry Eyring Center for Cell and Genome Science, University of Utah, 1390 Presidents Circle, Salt Lake City, UT, 84112, USA
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Shavit R, Batyrshina ZS, Yaakov B, Florean M, Köllner TG, Tzin V. The wheat dioxygenase BX6 is involved in the formation of benzoxazinoids in planta and contributes to plant defense against insect herbivores. PLANT SCIENCE : AN INTERNATIONAL JOURNAL OF EXPERIMENTAL PLANT BIOLOGY 2022; 316:111171. [PMID: 35151455 DOI: 10.1016/j.plantsci.2021.111171] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/25/2021] [Revised: 12/22/2021] [Accepted: 12/25/2021] [Indexed: 06/14/2023]
Abstract
Benzoxazinoids are plant specialized metabolites with defense properties, highly abundant in wheat (Triticum), one of the world's most important crops. The goal of our study was to characterize dioxygenase BX6 genes in tetraploid and hexaploid wheat genotypes and to elucidate their effects on defense against herbivores. Phylogenetic analysis revealed four BX6 genes in the hexaploid wheat T. aestivum, but only one ortholog was found in the tetraploid (T. turgidum) wild emmer wheat and the cultivated durum wheat. Transcriptome sequencing of durum wheat plants, damaged by either aphids or caterpillars, revealed that several BX genes, including TtBX6, were upregulated upon caterpillar feeding, relative to the undamaged control plants. A virus-induced gene silencing approach was used to reduce the expression of BX6 in T. aestivum plants, which exhibited both reduced transcript levels and reduced accumulation of different benzoxazinoids. To elucidate the effect of BX6 on plant defense, bioassays with different herbivores feeding on BX6-silenced leaves were conducted. The results showed that plants with silenced BX6 were more susceptible to aphids and the two-spotted spider mite than the control. Overall, our study indicates that wheat BX6 is involved in benzoxazinoid formation in planta and contributes to plant resistance against insect herbivores.
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Affiliation(s)
- Reut Shavit
- French Associates Institute for Agriculture and Biotechnology of Drylands, Jacob Blaustein Institutes for Desert Research, Ben-Gurion University of the Negev, Sede Boqer Campus, 8499000, Israel
| | - Zhaniya S Batyrshina
- French Associates Institute for Agriculture and Biotechnology of Drylands, Jacob Blaustein Institutes for Desert Research, Ben-Gurion University of the Negev, Sede Boqer Campus, 8499000, Israel
| | - Beery Yaakov
- French Associates Institute for Agriculture and Biotechnology of Drylands, Jacob Blaustein Institutes for Desert Research, Ben-Gurion University of the Negev, Sede Boqer Campus, 8499000, Israel
| | - Matilde Florean
- Max Planck Institute for Chemical Ecology, Department of Natural Product Biosynthesis, D-07745, Jena, Germany
| | - Tobias G Köllner
- Max Planck Institute for Chemical Ecology, Department of Natural Product Biosynthesis, D-07745, Jena, Germany
| | - Vered Tzin
- French Associates Institute for Agriculture and Biotechnology of Drylands, Jacob Blaustein Institutes for Desert Research, Ben-Gurion University of the Negev, Sede Boqer Campus, 8499000, Israel.
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20
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Zhou 周绍群 S, Jander G. Molecular ecology of plant volatiles in interactions with insect herbivores. JOURNAL OF EXPERIMENTAL BOTANY 2022; 73:449-462. [PMID: 34581787 DOI: 10.1093/jxb/erab413] [Citation(s) in RCA: 12] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/07/2021] [Accepted: 09/08/2021] [Indexed: 06/13/2023]
Abstract
Plant-derived volatile organic compounds (VOCs) play pivotal roles in interactions with insect herbivores. Individual VOCs can be directly toxic or deterrent, serve as signal molecules to attract natural enemies, and/or be perceived by distal plant tissues as a priming signal to prepare for expected herbivory. Environmental conditions, as well as the specific plant-insect interaction being investigated, strongly influence the observed functions of VOC blends. The complexity of plant-insect chemical communication via VOCs is further enriched by the sophisticated molecular perception mechanisms of insects, which can respond to one or more VOCs and thereby influence insect behavior in a manner that has yet to be fully elucidated. Despite numerous gaps in the current understanding of VOC-mediated plant-insect interactions, successful pest management strategies such as push-pull systems, synthetic odorant traps, and crop cultivars with modified VOC profiles have been developed to supplement chemical pesticide applications and enable more sustainable agricultural practices. Future studies in this field would benefit from examining the responses of both plants and insects in the same experiment to gain a more complete view of these interactive systems. Furthermore, a molecular evolutionary study of key genetic elements of the ecological interaction phenotypes could provide new insights into VOC-mediated plant communication with insect herbivores.
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Affiliation(s)
- Shaoqun Zhou 周绍群
- Shenzhen Branch, Guangdong Laboratory of Lingnan Modern Agriculture, Genome Analysis Laboratory of the Ministry of Agriculture and Rural Affairs, Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences, Shenzhen, China
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21
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Abramov A, Hoffmann T, Stark TD, Zheng L, Lenk S, Hammerl R, Lanzl T, Dawid C, Schön CC, Schwab W, Gierl A, Frey M. Engineering of benzoxazinoid biosynthesis in Arabidopsis thaliana: Metabolic and physiological challenges. PHYTOCHEMISTRY 2021; 192:112947. [PMID: 34534712 DOI: 10.1016/j.phytochem.2021.112947] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/22/2021] [Revised: 08/29/2021] [Accepted: 09/07/2021] [Indexed: 06/13/2023]
Abstract
Plant specialised metabolites constitute a layer of chemical defence. Classes of the defence compounds are often restricted to a certain taxon of plants, e.g. benzoxazinoids (BX) are characteristically detected in grasses. BXs confer wide-range defence by controlling herbivores and microbial pathogens and are allelopathic compounds. In the crops maize, wheat and rye high concentrations of BXs are synthesised at an early developmental stage. By transfer of six Bx-genes (Bx1 to Bx5 and Bx8) it was possible to establish the biosynthesis of 2,4-dihydroxy-1,4-benzoxazin-3-one glucoside (GDIBOA) in a concentration of up to 143 nmol/g dry weight in Arabidopsis thaliana. Our results indicate that inefficient channeling of substrates along the pathway and metabolisation of intermediates in host plants might be a general drawback for transgenic establishment of specialised metabolite biosynthesis pathways. As a consequence, BX levels required for defence are not obtained in Arabidopsis. We could show that indolin-2-one (ION), the first specific intermediate, is phytotoxic and is metabolised by hydroxylation and glycosylation by a wide spectrum of plants. In Arabidopsis, metabolic stress due to the enrichment of ION leads to elevated levels of salicylic acid (SA) and in addition to its intrinsic phytotoxicity, ION affects plant morphology indirectly via SA. We could show that Bx3 has a crucial role in the evolution of the pathway, first based on its impact on flux into the pathway and, second by C3-hydroxylation of the phytotoxic ION. Thereby BX3 interferes with a supposedly generic detoxification system towards the non-specific intermediate.
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Affiliation(s)
- Aleksej Abramov
- Chair of Plant Breeding, Technical University of Munich, Liesel-Beckman Str. 2, 85354, Freising, Germany
| | - Thomas Hoffmann
- Associate Professorship of Biotechnology of Natural Products, Technical University of Munich, Liesel-Beckmann Str. 1, 85354, Freising, Germany
| | - Timo D Stark
- Chair of Food Chemistry and Molecular Sensory Science, Technical University of Munich, Lise-Meitner Str. 34, 85354, Freising, Germany
| | - Linlin Zheng
- Chair of Genetics, Technical University of Munich, Emil-Ramann Str. 8, 85354, Freising, Germany
| | - Stefan Lenk
- Chair of Genetics, Technical University of Munich, Emil-Ramann Str. 8, 85354, Freising, Germany
| | - Richard Hammerl
- Chair of Food Chemistry and Molecular Sensory Science, Technical University of Munich, Lise-Meitner Str. 34, 85354, Freising, Germany
| | - Tobias Lanzl
- Chair of Plant Breeding, Technical University of Munich, Liesel-Beckman Str. 2, 85354, Freising, Germany
| | - Corinna Dawid
- Chair of Food Chemistry and Molecular Sensory Science, Technical University of Munich, Lise-Meitner Str. 34, 85354, Freising, Germany
| | - Chris-Carolin Schön
- Chair of Plant Breeding, Technical University of Munich, Liesel-Beckman Str. 2, 85354, Freising, Germany
| | - Wilfried Schwab
- Associate Professorship of Biotechnology of Natural Products, Technical University of Munich, Liesel-Beckmann Str. 1, 85354, Freising, Germany
| | - Alfons Gierl
- Chair of Genetics, Technical University of Munich, Emil-Ramann Str. 8, 85354, Freising, Germany
| | - Monika Frey
- Chair of Plant Breeding, Technical University of Munich, Liesel-Beckman Str. 2, 85354, Freising, Germany.
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22
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Zhang F, Wu J, Sade N, Wu S, Egbaria A, Fernie AR, Yan J, Qin F, Chen W, Brotman Y, Dai M. Genomic basis underlying the metabolome-mediated drought adaptation of maize. Genome Biol 2021; 22:260. [PMID: 34488839 PMCID: PMC8420056 DOI: 10.1186/s13059-021-02481-1] [Citation(s) in RCA: 37] [Impact Index Per Article: 12.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/25/2021] [Accepted: 08/25/2021] [Indexed: 11/10/2022] Open
Abstract
Background Drought is a major environmental disaster that causes crop yield loss worldwide. Metabolites are involved in various environmental stress responses of plants. However, the genetic control of metabolomes underlying crop environmental stress adaptation remains elusive. Results Here, we perform non-targeted metabolic profiling of leaves for 385 maize natural inbred lines grown under well-watered as well as drought-stressed conditions. A total of 3890 metabolites are identified and 1035 of these are differentially produced between well-watered and drought-stressed conditions, representing effective indicators of maize drought response and tolerance. Genetic dissections reveal the associations between these metabolites and thousands of single-nucleotide polymorphisms (SNPs), which represented 3415 metabolite quantitative trait loci (mQTLs) and 2589 candidate genes. 78.6% of mQTLs (2684/3415) are novel drought-responsive QTLs. The regulatory variants that control the expression of the candidate genes are revealed by expression QTL (eQTL) analysis of the transcriptomes of leaves from 197 maize natural inbred lines. Integrated metabolic and transcriptomic assays identify dozens of environment-specific hub genes and their gene-metabolite regulatory networks. Comprehensive genetic and molecular studies reveal the roles and mechanisms of two hub genes, Bx12 and ZmGLK44, in regulating maize metabolite biosynthesis and drought tolerance. Conclusion Our studies reveal the first population-level metabolomes in crop drought response and uncover the natural variations and genetic control of these metabolomes underlying crop drought adaptation, demonstrating that multi-omics is a powerful strategy to dissect the genetic mechanisms of crop complex traits. Supplementary Information The online version contains supplementary material available at 10.1186/s13059-021-02481-1.
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Affiliation(s)
- Fei Zhang
- National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan, 430070, China.,Hubei Hongshan laboratory, Wuhan, 430070, China
| | - Jinfeng Wu
- National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan, 430070, China.,Hubei Hongshan laboratory, Wuhan, 430070, China
| | - Nir Sade
- School of Plant Sciences and Food Security, The Institute for Cereal Crops Improvement, Tel-Aviv University, 69978, Tel Aviv, Israel
| | - Si Wu
- Department of Genetics, Stanford University School of Medicine, Stanford, CA, 94305, USA
| | - Aiman Egbaria
- School of Plant Sciences and Food Security, The Institute for Cereal Crops Improvement, Tel-Aviv University, 69978, Tel Aviv, Israel
| | - Alisdair R Fernie
- Max Planck Institute of Molecular Plant Physiology, 14476, Potsdam, Germany
| | - Jianbing Yan
- National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan, 430070, China.,Hubei Hongshan laboratory, Wuhan, 430070, China
| | - Feng Qin
- State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University, Beijing, 100193, China
| | - Wei Chen
- National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan, 430070, China.
| | - Yariv Brotman
- Max Planck Institute of Molecular Plant Physiology, 14476, Potsdam, Germany. .,Department of Life Sciences, Ben-Gurion University of the Negev, 8410501, Beersheba, Israel.
| | - Mingqiu Dai
- National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan, 430070, China. .,Hubei Hongshan laboratory, Wuhan, 430070, China.
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23
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Malook SU, Xu Y, Qi J, Li J, Wang L, Wu J. Mythimna separata herbivory primes maize resistance in systemic leaves. JOURNAL OF EXPERIMENTAL BOTANY 2021; 72:3792-3805. [PMID: 33647931 PMCID: PMC8096606 DOI: 10.1093/jxb/erab083] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 12/06/2020] [Accepted: 02/17/2021] [Indexed: 06/12/2023]
Abstract
Biotic and abiotic cues can trigger priming in plants, which enables plants to respond to subsequent challenge with stronger and/or faster responses. It is well known that herbivory activates defense-related responses in systemic leaves. However, little is known about whether insect feeding activates priming in systemic leaves. To determine whether and how herbivory induces priming in maize systemic leaves, a combination of insect bioassays, phytohormone and defense metabolite quantification, and genetic and transcriptome analyses were performed. Actual and simulated Mythimna separata herbivory in maize local leaves primed the systemic leaves for enhanced accumulation of jasmonic acid and benzoxazinoids and increased resistance to M. separata. Activation of priming in maize systemic leaves depends on both the duration of simulated herbivory and perception of M. separata oral secretions in the local leaves, and genetic analysis indicated that jasmonic acid and benzoxazinoids mediate the primed defenses in systemic leaves. Consistently, in response to simulated herbivory, the primed systemic leaves exhibited a large number of genes that were uniquely regulated or showed further up- or down-regulation compared with the non-primed systemic leaves. This study provides new insight into the regulation and ecological function of priming in maize.
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Affiliation(s)
- Saif ul Malook
- Department of Economic Plants and Biotechnology, Yunnan Key Laboratory for Wild Plant Resources, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming 650201, China
| | - Yuxing Xu
- Department of Economic Plants and Biotechnology, Yunnan Key Laboratory for Wild Plant Resources, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming 650201, China
- CAS Center for Excellence in Biotic Interactions, University of Chinese Academy of Sciences, Beijing 100049, China
| | - Jinfeng Qi
- Department of Economic Plants and Biotechnology, Yunnan Key Laboratory for Wild Plant Resources, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming 650201, China
- CAS Center for Excellence in Biotic Interactions, University of Chinese Academy of Sciences, Beijing 100049, China
| | - Jing Li
- Department of Economic Plants and Biotechnology, Yunnan Key Laboratory for Wild Plant Resources, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming 650201, China
- CAS Center for Excellence in Biotic Interactions, University of Chinese Academy of Sciences, Beijing 100049, China
| | - Lei Wang
- Department of Economic Plants and Biotechnology, Yunnan Key Laboratory for Wild Plant Resources, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming 650201, China
- CAS Center for Excellence in Biotic Interactions, University of Chinese Academy of Sciences, Beijing 100049, China
| | - Jianqiang Wu
- Department of Economic Plants and Biotechnology, Yunnan Key Laboratory for Wild Plant Resources, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming 650201, China
- CAS Center for Excellence in Biotic Interactions, University of Chinese Academy of Sciences, Beijing 100049, China
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24
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Engineering insect resistance using plant specialized metabolites. Curr Opin Biotechnol 2021; 70:115-121. [PMID: 33866214 DOI: 10.1016/j.copbio.2021.03.005] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/31/2021] [Revised: 03/03/2021] [Accepted: 03/17/2021] [Indexed: 11/22/2022]
Abstract
Plants in nature are protected against insect herbivory by a wide variety of specialized metabolites. Although insect herbivores generally tolerate the defensive metabolites of their preferred host plants, the presence of additional chemical defenses in otherwise closely related plant species can nevertheless provide resistance. This chemical resistance to insect herbivory can be enhanced by genetic engineering to increase the production of endogenous defensive metabolites, modify existing biochemical pathways, or move the biosynthesis of entirely new classes of specialized metabolites into recipient plants. However, current plant genetic engineering strategies are limited by insufficient knowledge of the biosynthetic pathways of plant specialized metabolism, unintended side-effects that result from redirecting plant metabolism, inadequate transgene construction and delivery methods, and requirements for tissue-specific production of defensive metabolites to enhance herbivore resistance.
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