An ecological acoustic recorder (EAR) for long-term monitoring of biological and anthropogenic sounds on coral reefs and other marine habitats

Moonlight-driven biological choruses in Hawaiian coral reefs

Sounds from fish and invertebrates in coral reefs can create persistent cacophonies that can be recorded for ecosystem monitoring, including during nighttime hours where visual surveys are typically not feasible. Here we use soundscape measurements in Hawaii to demonstrate that multiple coral reef communities are rapidly responsive to shifts in nighttime ambient light, with sustained changes in biological sound between moonrise and moonset. High frequency pulse train sounds from fish (0.5-1.5 kHz) are found to increase during moonlight hours, while low frequency fish vocalizations (0.1-0.3 kHz) and invertebrate sounds (2-20 kHz) are found to decrease during moonlight hours. These discoveries suggest that the rising and setting of the moon triggers regular shifts in coral reef ecosystem interactions. Future acoustic monitoring of reef health may be improved by comparing soundscapes during moonlight and non-moonlight hours, which may provide early indicators of shifts in the relative abundance of separate reef communities.

Fin whale song evolution in the North Atlantic

Animal songs can change within and between populations as the result of different evolutionary processes. When these processes include cultural transmission, the social learning of information or behaviours from conspecifics, songs can undergo rapid evolutions because cultural novelties can emerge more frequently than genetic mutations. Understanding these song variations over large temporal and spatial scales can provide insights into the patterns, drivers and limits of song evolution that can ultimately inform on the species' capacity to adapt to rapidly changing acoustic environments. Here, we analysed changes in fin whale (Balaenoptera physalus) songs recorded over two decades across the central and eastern North Atlantic Ocean. We document a rapid replacement of song INIs (inter-note intervals) over just four singing seasons, that co-occurred with hybrid songs (with both INIs), and a clear geographic gradient in the occurrence of different song INIs during the transition period. We also found gradual changes in INIs and note frequencies over more than a decade with fin whales adopting song changes. These results provide evidence of vocal learning in fin whales and reveal patterns of song evolution that raise questions on the limits of song variation in this species.

Diel spatio-temporal patterns of humpback whale singing on a high-density breeding ground

Humpback whale song chorusing dominates the marine soundscape in Hawai'i during winter months, yet little is known about spatio-temporal habitat use patterns of singers. We analysed passive acoustic monitoring data from five sites off Maui and found that ambient noise levels associated with song chorusing decreased during daytime hours nearshore but increased offshore. To resolve whether these changes reflect a diel offshore-onshore movement or a temporal difference in singing activity, data from 71 concurrently conducted land-based theodolite surveys were analysed. Non-calf pods (n = 3082), presumably including the majority of singers, were found further offshore with increasing time of the day. Separately, we acoustically localized 217 nearshore singers using vector-sensors. During the day, distances to shore and minimum distances among singers increased, and singers switched more between being stationary and singing while travelling. Together, these findings suggest that the observed diel trends in humpback whale chorusing off Maui represent a pattern of active onshore-offshore movement of singers. We hypothesize that this may result from singers attempting to reduce intraspecific acoustic masking when densities are high nearshore and avoidance of a loud, non-humpback, biological evening chorus offshore, creating a dynamic of movement of singers aimed at increasing the efficiency of their acoustic display.

Biodiversity assessment using passive acoustic recordings from off-reef location-Unsupervised learning to classify fish vocalization

We present the quantitative characterization of Grande Island's off-reef acoustic environment within the Zuari estuary during the pre-monsoon period. Passive acoustic recordings reveal prominent fish choruses. Detailed characteristics of the call employing oscillograms and individual fish call parameters of the segmented data include vocal groups such as Sciaenidae, Terapon theraps, and planktivorous as well as invertebrate sounds, e.g., snapping shrimp. We calculated biodiversity parameters (i) Acoustic Evenness Index (AEI), (ii) Acoustic Complexity Index (ACI), and mean sound pressure level (SPLrms) for three frequency bands such as full band (50-22 050 Hz), the low-frequency fish band (100-2000 Hz), and the high-frequency shrimp band (2000-20 000 Hz). Here, ACI and AEI metrics characterize the location's soundscape data effectively indicating increased biodiversity of fish species for both the low-frequency and high-frequency bands. Whereas variations for SPLrms are prominent for three frequency bands. Moreover, we employ unsupervised classification through a hybrid technique comprising principal component analysis (PCA) and K-means clustering for data features of four fish sound types. Employed PCA for dimensionality reduction and related K-means clustering successfully provides 96.20%, 76.81%, 100.00%, and 86.36% classification during the dominant fish chorus. Overall, classification performance (89.84%) is helpful in the real-time monitoring of the fish stocks in the ecosystem.

'Habitat-associated soundscape' hypothesis tested on several coral reefs within a lagoon (Bora-Bora Island, French Polynesia)

Coral reefs encompass different habitats that have their own living communities. The present study aimed to test the hypothesis that these different kinds of habitats were characterized by specific soundscapes. Within the lagoon of Bora-Bora, acoustic recordings and visual surveys of substrate type and fish communities were conducted on four reef sites belonging to the three main geomorphological habitats (fringing reef, channel reef, barrier reef) from February to April 2021. Two acoustic parameters were measured for each site and month, during the day and at night: the peak frequency (F_peak, in Hz) and the corresponding power spectral density (PSD_peak, in dB re 1 µPa² Hz^-1). Our results showed that each geomorphological unit could be characterized by these two parameters and therefore had a specific acoustic signature. Moreover, our study showed that a higher living coral cover was significantly positively correlated with F_peak in the low-frequency band (50-2000 Hz) during day-time. Although biodiversity indices based on visual surveys did not differ significantly, fish communities and soundscapes were significantly different between sites. Overall, our study underlines the importance of passive acoustics in coral reef monitoring as soundscapes are habitat specific.

Supplementary Information

The online version contains supplementary material available at 10.1007/s00227-023-04206-3.

Acoustic properties and shallow water propagation distances of Caribbean spiny lobster sounds (Panulirus argus)

Marine crustaceans produce broadband sounds that are useful for passive acoustic monitoring to support conservation and management efforts. However, the propagation characteristics and detection ranges of their signals are poorly known, limiting our leveraging of these sounds. Here, we used a four-hydrophone linear array to measure source levels (SLs) and sound propagation from Caribbean spiny lobsters (Panulirus argus) of a wide range of sizes within a natural, shallow water habitat (3.3 m depth). Source level in peak-peak (SLpp) varied with body size; larger individuals produced SLpp up to 166 dB re 1 μPa. However, transmission losses (TL) were similar across all sizes, with a global fitted TL of 12.1 dB. Correspondingly, calculated detection ranges varied with body size, ranging between 14 and 364 m for small and large individuals (respectively). This increased up to 1612 m for large spiny lobsters when considering lower ambient noise levels. Despite the potential ease of tank studies, our results highlight the importance of empirical in situ sound propagation studies for marine crustaceans. Given the important ecological and economic role of spiny lobsters, these data are a key step to supporting remote monitoring of this species for fisheries management and efforts to acoustically quantify coral reefs' health.

Temporal evolution of the Mediterranean fin whale song

We present an analysis of fin whale (Balaenoptera physalus) songs on passive acoustic recordings from the Pelagos Sanctuary (Western Mediterranean Basin). The recordings were gathered between 2008 and 2018 using 2 different hydrophone stations. We show how 20 Hz fin whale pulses can be automatically detected using a low complexity convolutional neural network (CNN) despite data variability (different recording devices exposed to diverse noises). The pulses were further classified into the two categories described in past studies and inter pulse intervals (IPI) were measured. The results confirm previous observations on the local relationship between pulse type and IPI with substantially more data. Furthermore we show inter-annual shifts in IPI and an intra-annual trend in pulse center frequency. This study provides new elements of comparison for the understanding of long term fin whale song trends worldwide.

Fin Whale (Balaenoptera physalus) in the Ligurian Sea: Preliminary Study on Acoustics Demonstrates Their Regular Occurrence in Autumn

The patterns of movement of the fin whale (Balaenoptera physalus (Linnaeus, 1758)) in the Mediterranean Sea are still a matter of debate. Feeding aggregations are well known in the Corso-Liguro-Provençal Basin from July to September, but little is known for the autumn and winter seasons. Passive acoustic monitoring (PAM) was implemented in the Ligurian Sea to overcome this gap and to investigate the temporal and spatial variation of fin whale acoustic presence. From July to December 2011, five autonomous recorders were deployed at between 700 and 900 m depths. Fin whale calls were automatically detected almost every day, with higher vocalization rates in October, November, and December. Furthermore, daily vocalization rates were higher during light hours, and closer to the coast. These outcomes suggest that not all the individuals migrate, staying in the area also during autumn for feeding or breeding purposes. The dial cycle of vocalization might be related to feeding activities and zooplankton vertical migration, whereas the proximity to the coast can be explained by the morphology of the area that promotes the upwelling system. Although this work only represents a six-month period, certainly it suggests the need for a larger spatial and temporal PAM effort, crucial for species management and for mitigating possible impact of anthropogenic activities at the basin level.

Food talk: 40-Hz fin whale calls are associated with prey biomass

Animals use varied acoustic signals that play critical roles in their lives. Understanding the function of these signals may inform about key life-history processes relevant for conservation. In the case of fin whales (Balaenoptera physalus), that produce different call types associated with different behaviours, several hypotheses have emerged regarding call function, but the topic still remains in its infancy. Here, we investigate the potential function of two fin whale vocalizations, the song-forming 20-Hz call and the 40-Hz call, by examining their production in relation to season, year and prey biomass. Our results showed that the production of 20-Hz calls was strongly influenced by season, with a clear peak during the breeding months, and secondarily by year, likely due to changes in whale abundance. These results support the reproductive function of the 20-Hz song used as an acoustic display. Conversely, season and year had no effect on variation in 40-Hz calling rates, but prey biomass did. This is the first study linking 40-Hz call activity to prey biomass, supporting the previously suggested food-associated function of this call. Understanding the functions of animal signals can help identifying functional habitats and predict the negative effects of human activities with important implications for conservation.

Noise pollution on coral reefs? - A yet underestimated threat to coral reef communities

Noise pollution is an anthropogenic stressor that is increasingly recognized for its negative impact on the physiology, behavior and fitness of marine organisms. Driven by the recent expansion of maritime shipping, artisanal fishing and tourism (e.g., motorboats used for recreational purpose), underwater noise increased greatly on coral reefs. In this review, we first provide an overview on how reef organisms sense and use sound. Thereafter we review the current knowledge on how underwater noise affects different reef organisms. Although the majority of available examples are limited to few fish species, we emphasize how the impact of noise differs based on an organisms' acoustic sensitivity, mobility and developmental stage, as well as between noise type, source and duration. Finally, we highlight measures available to governments, the shipping industry and individual users and provide directions for polices and research aimed to manage this global issue of noise emission on coral reefs.

Passive acoustic monitoring reveals spatiotemporal segregation of two fish-eating killer whale Orcinus orca populations in proposed critical habitat

Competition for prey resources among ecologically similar populations that occur in sympatry can be reduced by spatiotemporal resource partitioning. Understanding patterns of habitat use of cetaceans can be difficult since they are highly mobile and can have large home ranges. We used passive acoustic monitoring at 15 sites along the coast of Washington State, USA, to assess habitat use patterns of 2 sympatric populations of fish-eating killer whales Orcinus orca: northern residents (NRKW) and southern residents (SRKW). This area is part of the ocean distributions of a number of important runs of Chinook salmon Oncorhyncus tshawytscha, the preferred prey of both populations, and is proposed critical habitat for SRKW. We compared monthly occurrence of both populations at recorder locations grouped by their proximity to the Strait of Juan de Fuca to the north and the Columbia River to the south in one analysis and by their distance from shore in a second analysis. NRKW and SRKW were detected throughout the year with spring and fall peaks in occurrence. The northernmost sites accounted for 93% of NRKW detections, while less than half of SRKW detections were at these sites. SRKW were most frequently detected at nearshore sites (83% of detections), while the majority of NRKW detections were at mid-shelf and deep sites (94% of detections). This study provides further information about the habitat use of these resident killer whale populations with implications for their management and conservation.

Marine health of the Arabian Gulf: Drivers of pollution and assessment approaches focusing on desalination activities

The Arabian Gulf is one of the most adversely affected marine environments worldwide, which results from combined pollution drivers including climate change, oil and gas activities, and coastal anthropogenic disturbances. Desalination activities are one of the major marine pollution drivers regionally and internationally. Arabian Gulf countries represent a hotspot of desalination activities as they are responsible for nearly 50% of the global desalination capacity. Building desalination plants, up-taking seawater, and discharging untreated brine back into the sea adversely affects the biodiversity of the marine ecosystems. The present review attempted to reveal the potential negative effects of desalination plants on the Gulf's marine environments. We emphasised different conventional and innovative assessment tools used to assess the health of marine environments and evaluate the damage exerted by desalination activity in the Gulf. Finally, we suggested effective management approaches to tackle the issue including the significance of national regulations and regional cooperation.

Fluctuations in Hawaii’s humpback whale Megaptera novaeangliae population inferred from male song chorusing off Maui

Approximately half of the North Pacific humpback whale Megaptera novaeangliae stock visits the shallow waters of the main Hawaiian Islands seasonally. Within this breeding area, mature males produce an elaborate acoustic display known as song, which becomes the dominant source of ambient underwater sound between December and April. Following reports of unusually low whale numbers that began in 2015/16, we examined song chorusing recorded through long-term passive acoustic monitoring at 6 sites off Maui as a proxy for relative whale abundance between 2014 and 2019. Daily root-mean-square sound pressure levels (RMS SPLs) were calculated to compare variations in low-frequency acoustic energy (0-1.5 kHz). After 2014/15, the overall RMS SPLs decreased between 5.6 and 9.7 dB re 1 µPa2 during the peak of whale season (February and March), reducing ambient acoustic energy from chorusing by over 50%. This change in song levels co-occurred with a broad-scale oceanic heat wave in the northeast Pacific termed the ‘Blob,’ a major El Niño event in the North Pacific, and a warming period in the Pacific Decadal Oscillation cycle. Although it remains unclear whether our observations reflect a decrease in population size, a change in migration patterns, a shift in distribution to other areas, a change in the behavior of males, or some combination of these, our results indicate that continued monitoring and further studies of humpback whales throughout the North Pacific are warranted to better understand the fluctuations occurring in this recently recovered population and other populations that continue to be endangered or threatened.

Ambulatory Assessment for Physical Activity Research: State of the Science, Best Practices and Future Directions

Technological and digital progress benefits physical activity (PA) research. Here we compiled expert knowledge on how Ambulatory Assessment (AA) is utilized to advance PA research, i.e., we present results of the 2nd International CAPA Workshop 2019 "Physical Activity Assessment - State of the Science, Best Practices, Future Directions" where invited researchers with experience in PA assessment, evaluation, technology and application participated. First, we provide readers with the state of the AA science, then we give best practice recommendations on how to measure PA via AA and shed light on methodological frontiers, and we furthermore discuss future directions. AA encompasses a class of methods that allows the study of PA and its behavioral, biological and physiological correlates as they unfold in everyday life. AA includes monitoring of movement (e.g., via accelerometry), physiological function (e.g., via mobile electrocardiogram), contextual information (e.g., via geolocation-tracking), and ecological momentary assessment (EMA; e.g., electronic diaries) to capture self-reported information. The strengths of AA are data assessment that near realtime, which minimizes retrospective biases in real-world settings, consequentially enabling ecological valid findings. Importantly, AA enables multiple assessments across time within subjects resulting in intensive longitudinal data (ILD), which allows unraveling within-person determinants of PA in everyday life. In this paper, we show how AA methods such as triggered e-diaries and geolocation-tracking can be used to measure PA and its correlates, and furthermore how these findings may translate into real-life interventions. In sum, AA provides numerous possibilities for PA research, especially the opportunity to tackle within- subject antecedents, concomitants, and consequences of PA as they unfold in everyday life. In-depth insights on determinants of PA could help us design and deliver impactful interventions in real-world contexts, thus enabling us to solve critical health issues in the 21st century such as insufficient PA and high levels of sedentary behavior.

Listening forward: approaching marine biodiversity assessments using acoustic methods

Ecosystems and the communities they support are changing at alarmingly rapid rates. Tracking species diversity is vital to managing these stressed habitats. Yet, quantifying and monitoring biodiversity is often challenging, especially in ocean habitats. Given that many animals make sounds, these cues travel efficiently under water, and emerging technologies are increasingly cost-effective, passive acoustics (a long-standing ocean observation method) is now a potential means of quantifying and monitoring marine biodiversity. Properly applying acoustics for biodiversity assessments is vital. Our goal here is to provide a timely consideration of emerging methods using passive acoustics to measure marine biodiversity. We provide a summary of the brief history of using passive acoustics to assess marine biodiversity and community structure, a critical assessment of the challenges faced, and outline recommended practices and considerations for acoustic biodiversity measurements. We focused on temperate and tropical seas, where much of the acoustic biodiversity work has been conducted. Overall, we suggest a cautious approach to applying current acoustic indices to assess marine biodiversity. Key needs are preliminary data and sampling sufficiently to capture the patterns and variability of a habitat. Yet with new analytical tools including source separation and supervised machine learning, there is substantial promise in marine acoustic diversity assessment methods.

The Use of Soundscapes to Monitor Fish Communities: Meaningful Graphical Representations Differ with Acoustic Environment

Many marine animals produce sounds in several phases of their life cycles, either actively or as a byproduct of their activities, such as during mate attraction or when moving. Recent studies of underwater soundscapes have proved passive acoustic monitoring to be a cost-effective, non-invasive tool to understand ecological processes, especially when sampling in adverse conditions or at great depth. Four days of sound recordings at three seamounts from the Azorean archipelago were examined to assess the suitability of different sound graphical representations to characterize different acoustic environments that contrast in the contribution of vocal fish communities. Long-term spectrograms, sound pressure level, spectral probability densities and the Acoustic Complexity Index (ACI) were computed for two shallow seamounts (Formigas and Princesa Alice, c. 35 m) and one deep seamount (Condor, 190 m) using graphics with different time spans. Only in Formigas, which presented the highest occurrence of fish sounds, was it possible to observe temporal patterns of fish vocal activity in the graphical representations. We highlight that habitats with a higher diversity and abundance of sounds are the most suitable targets for these methods, while in locations with a low prevalence of fish sounds a combination of several methods would be recommended.

Baleen whale acoustic presence and behaviour at a Mid-Atlantic migratory habitat, the Azores Archipelago

The identification of important areas during the annual life cycle of migratory animals, such as baleen whales, is vital for their conservation. In boreal springtime, fin and blue whales feed in the Azores on their way to northern latitudes while sei whales migrate through the archipelago with only occasional feeding. Little is known about their autumn or winter presence or their acoustic behaviour in temperate migratory habitats. This study used a 5-year acoustic data set collected by autonomous recorders in the Azores that were processed and analysed using an automated call detection and classification system. Fin and blue whales were acoustically present in the archipelago from autumn to spring with marked seasonal differences in the use of different call types. Diel patterns of calling activity were only found for fin whales with more calls during the day than night. Sei whales showed a bimodal distribution of acoustic presence in spring and autumn, corresponding to their expected migration patterns. Diel differences in sei whale calling varied with season and location. This work highlights the importance of the Azores as a migratory and wintering habitat for three species of baleen whales and provides novel information on their acoustic behaviour in a mid-Atlantic region.

Temporal patterns in acoustic presence and foraging activity of oceanic dolphins at seamounts in the Azores

Several seamounts have been identified as hotspots of marine life in the Azores, acting as feeding stations for top predators, including cetaceans. Passive acoustic monitoring is an efficient tool to study temporal variations in the occurrence and behaviour of vocalizing cetacean species. We deployed bottom-moored Ecological Acoustic Recorders (EARs) to investigate the temporal patterns in acoustic presence and foraging activity of oceanic dolphins at two seamounts (Condor and Gigante) in the Azores. Data were collected in March-May 2008 and April 2010-February 2011. Dolphins were present year round and nearly every day at both seamounts. Foraging signals (buzzes and bray calls) were recorded in >87% of the days dolphin were present. There was a strong diel pattern in dolphin acoustic occurrence and behaviour, with higher detections of foraging and echolocation vocalizations during the night and of social signals during daylight hours. Acoustic data demonstrate that small dolphins consistently use Condor and Gigante seamounts to forage at night. These results suggest that these seamounts likely are important feeding areas for dolphins. This study contributes to a better understanding of the feeding ecology of oceanic dolphins and provides new insights into the role of seamount habitats for top predators.

Comparison of fin whale 20 Hz call detections by deep-water mobile autonomous and stationary recorders

Acoustically equipped deep-water mobile autonomous platforms can be used to survey for marine mammals over intermediate spatiotemporal scales. Direct comparisons to fixed recorders are necessary to evaluate these tools as passive acoustic monitoring platforms. One glider and two drifting deep-water floats were simultaneously deployed within a deep-water cabled hydrophone array to quantitatively assess their survey capabilities. The glider was able to follow a pre-defined track while float movement was somewhat unpredictable. Fin whale (Balaenoptera physalus) 20 Hz pulses were recorded by all hydrophones throughout the two-week deployment. Calls were identified using a template detector, which performed similarly across recorder types. The glider data contained up to 78% fewer detections per hour due to increased low-frequency flow noise present during glider descents. The glider performed comparably to the floats and fixed recorders at coarser temporal scales; hourly and daily presence of detections did not vary by recorder type. Flow noise was related to glider speed through water and dive state. Glider speeds through water of 25 cm/s or less are suggested to minimize flow noise and the importance of glider ballasting, detector characterization, and normalization by effort when interpreting glider-collected data and applying it to marine mammal density estimation are discussed.

Characterization of the acoustic community of vocal fishes in the Azores

Sounds produced by teleost fishes are an important component of marine soundscapes, making passive acoustic monitoring (PAM) an effective way to map the presence of vocal fishes with a minimal impact on ecosystems. Based on a literature review, we list the known soniferous fish species occurring in Azorean waters and compile their sounds. We also describe new fish sounds recorded in Azores seamounts. From the literature, we identified 20 vocal fish species present in Azores. We analysed long-term acoustic recordings carried out since 2008 in Condor and Princesa Alice seamounts and describe 20 new putative fish sound sequences. Although we propose candidates as the source of some vocalizations, this study puts into evidence the myriad of fish sounds lacking species identification. In addition to identifying new sound sequences, we provide the first marine fish sound library for Azores. Our acoustic library will allow to monitor soniferous fish species for conservation and management purposes.

Song production by the North Pacific right whale, Eubalaena japonica

This paper describes song production by the eastern North Pacific right whale (NPRW, Eubalaena japonica) in the southeastern Bering Sea. Songs were localized in real-time to individuals using sonobuoys. Singers whose sex could be determined were all males. Autonomous recorder data from 17 year-long deployments were analyzed to document and characterize song types. Four distinct song types were documented over eight years (2009-2017) at five distinct locations. Each song type consists of a hierarchical structure of 1-3 different repeating phrases comprised predominantly of gunshot sounds; three of the four songs contained additional sound types (downsweep, moan, and low-frequency pulsive call). Songs were detected annually (July-January); all song types remained consistent over eight years. Two different songs often occurred simultaneously, produced by different individuals; the same song was never detected simultaneously at the same location. The same song type was detected on the same day and time at two distant locations, indicating multiple individuals can produce the same song. These findings provide support that males produce song; it remains unknown if females also sing. NPRW is the first right whale species documented to produce song. Based on current knowledge about song in mysticetes, it is hypothesized that these songs are reproductive displays.

Subarctic singers: Humpback whale (Megaptera novaeangliae) song structure and progression from an Icelandic feeding ground during winter

Humpback whale songs associated with breeding behaviors are increasingly reported outside of traditional low latitude breeding grounds. Songs from a subarctic feeding ground during the winter were quantitatively characterized to investigate the structure and temporal changes of the songs at such an atypical location. Recordings were collected from 26. January to 12. March, 2011, using bottom mounted recorders. Humpback songs were detected on 91% of the recording days with peak singing activities during 9.–26. February. The majority of the recordings included multiple chorusing singers. The songs were characterized by a) common static themes which transitioned consistently to predictable themes, b) shifting themes which occurred less predictably and c) rare themes. A set median sequence was found for four different periods (sets) of recordings (approximately 1 week each). The set medians were highly similar and formed a single cluster indicating that the sequences of themes sung in this area belonged to a single cluster of songs despite of the variation caused by the shifting themes. These subarctic winter songs could, thus, represent a characteristic song type for this area which is comparable to extensively studied songs from traditional low latitude breeding grounds. An increase in the number of themes per sequence was observed throughout the recording period including minor changes in the application of themes in the songs; indicating a gradual song progression. The results confirm that continual singing of sophisticated songs occur during the breeding season in the subarctic. In addition to being a well-established summer feeding ground the study area appears to be an important overwintering site for humpback whales delaying or canceling their migration where males engage in active sexual displays, i.e. singing. Importantly, such singing activity on a shared feeding ground likely aids the cultural transmission of songs in the North Atlantic.

Multiscale spatio-temporal patterns of boat noise on U.S. Virgin Island coral reefs

Sound-sensitive organisms are abundant on coral reefs. Accordingly, experiments suggest that boat noise could elicit adverse effects on coral reef organisms. Yet, there are few data quantifying boat noise prevalence on coral reefs. We use long-term passive acoustic recordings at nine coral reefs and one sandy comparison site in a marine protected area to quantify spatio-temporal variation in boat noise and its effect on the soundscape. Boat noise was most common at reefs with high coral cover and fish density, and temporal patterns reflected patterns of human activity. Boat noise significantly increased low-frequency sound levels at the monitored sites. With boat noise present, the peak frequencies of the natural soundscape shifted from higher frequencies to the lower frequencies frequently used in fish communication. Taken together, the spectral overlap between boat noise and fish communication and the elevated boat detections on reefs with biological densities raises concern for coral reef organisms.

Automatic detection of fish sounds based on multi-stage classification including logistic regression via adaptive feature weighting

This paper presents a method for automatic detection of fish sounds in an underwater environment. There exist two difficulties: (i) features and classifiers that provide good detection results differ depending on the underwater environment and (ii) there are cases where a large amount of training data that is necessary for supervised machine learning cannot be prepared. A method presented in this paper (the proposed hybrid method) overcomes these difficulties as follows. First, novel logistic regression (NLR) is derived via adaptive feature weighting by focusing on the accuracy of classification results by multiple classifiers, support vector machine (SVM), and k-nearest neighbors (k-NN). Although there are cases where SVM or k-NN cannot work well due to divergence of useful features, NLR can produce complementary results. Second, the proposed hybrid method performs multi-stage classification with consideration of the accuracy of SVM, k-NN, and NLR. The multi-stage acquisition of reliable results works adaptively according to the underwater environment to reduce performance degradation due to diversity of useful classifiers even if abundant training data cannot be prepared. Experiments on underwater recordings including sounds of Sciaenidae such as silver croakers (Pennahia argentata) and blue drums (Nibea mitsukurii) show the effectiveness of the proposed hybrid method.

Investigating the utility of ecoacoustic metrics in marine soundscapes

Soundscape analysis is a potentially powerful tool in ecosystem monitoring. Ecoacoustic metrics, including the Acoustic Complexity Index (ACI) and Acoustic Entropy (H), were originally developed for terrestrial ecosystems and are now increasingly being applied to investigate the biodiversity, habitat complexity and health of marine systems, with mixed results. To elucidate the efficacy of applying these metrics to marine soundscapes, their sensitivity to variations in call rate and call type were evaluated using a combination of field data and synthetic recordings. In soundscapes dominated by impulsive broadband snapping shrimp sounds, ACI increased non-linearly with increased snapping rate (∼100–3500 snaps/min), with a percent range of variation (∼40–50%) that exceeds that reported in most studies. H, however, decreased only slightly (∼0.04 units) in response to these same snap rate changes. The response of these metrics to changes in the rate of broadband snapping was not strongly influenced by the spectral resolution of the analysis. For soundscapes dominated by harmonic fish calls, increased rates of calling (∼5–120 calls/min) led to decreased ACI (∼20–40% range of variation) when coarse spectral resolutions (Δf = 94 or 47 Hz) were used in the analysis, but ACI increased (∼20% range of variation) when a finer resolution (Δf = 23 Hz) was employed. Regardless of spectral resolution used in the analysis, H decreased (∼0.20 units) in response to increased rates of harmonic calling. These results show that ACI and H can be modulated strongly by variations in the activity of a single sound-producing species, with additional sensitivity to call type and the resolution of the analysis. Variations in ACI and H, therefore, cannot be assumed to track call diversity, and the utility of these metrics as ecological indicators in marine environments may be limited.

Underwater Soundscape Monitoring and Fish Bioacoustics: A Review

Soundscape ecology is a rapidly growing field with approximately 93% of all scientific articles on this topic having been published since 2010 (total about 610 publications since 1985). Current acoustic technology is also advancing rapidly, enabling new devices with voluminous data storage and automatic signal detection to define sounds. Future uses of passive acoustic monitoring (PAM) include biodiversity assessments, monitoring habitat health, and locating spawning fishes. This paper provides a review of ambient sound and soundscape ecology, fish acoustic monitoring, current recording and sampling methods used in long-term PAM, and parameters/metrics used in acoustic data analysis.

Calibration of vertical array tilt using snapping shrimp sound

Snapping shrimp are the dominant biological source of high-frequency (>2 kHz) ambient noise in warm coastal waters. In a recent experiment, the highly impulsive signals produced by shrimp snaps were recorded continually by a large-aperture vertical array (56 m) that was bottom-moored in 100-m deep shallow water. Assuming the array vertical, initial localization of individual snaps based on wavefront curvature along the array indicated that all snaps came from either above or beneath the flat seabed. By constraining all snaps to originate from the seabed, several hundred snaps within a radius of 500 m from the array over a 20-s window were detected successfully and localized in the three-dimensional space of time-of-arrival, range, and array tilt. Since the estimated array tilt for each snap is a projection of the absolute array tilt onto the nominal array-snap plane, the maximal tilt in the range and tilt domain corresponds to the absolute array tilt. Both simulations and data demonstrate that snapping shrimp can be exploited as a source of opportunity for calibration of vertical array tilt.

Acoustic monitoring of coastal dolphins and their response to naval mine neutralization exercises

To investigate the potential impacts of naval mine neutralization exercises (MINEX) on odontocete cetaceans, a long-term passive acoustic monitoring study was conducted at a US Navy training range near Virginia Beach, USA. Bottom-moored acoustic recorders were deployed in 2012-2016 near the epicentre of MINEX training activity and were refurbished every 2-4 months. Recordings were analysed for the daily presence/absence of dolphins, and dolphin acoustic activity was quantified in detail for the hours and days before and after 31 MINEX training events. Dolphins occurred in the area year-round, but there was clear seasonal variability, with lower presence during winter months. Dolphins exhibited a behavioural response to underwater detonations. Dolphin acoustic activity near the training location was lower during the hours and days following detonations, suggesting that animals left the area and/or reduced their signalling. Concurrent acoustic monitoring farther away from the training area suggested that the radius of response was between 3 and 6 km. A generalized additive model indicated that the predictors that explained the greatest amount of deviance in the data were the day relative to the training event, the hour of the day and circumstances specific to each training event.

Natural and anthropogenic events influence the soundscapes of four bays on Hawaii Island

The soundscapes of four bays along the Kona Coast of Hawaii Island were monitored between January 2011 and March 2013. Equivalent, unweighted sound pressure levels within standard 1/3rd-octave bands (dB re: 1μPa) were calculated for each recording. Sound levels increased at night and were lowest during the daytime when spinner dolphins use the bays to rest. A tsunami provided an opportunity to monitor the soundscape with little anthropogenic component. We detected a decrease in sound levels and variability in one of the busiest bays. During the daytime in the 3.15kHz 1/3rd octave band, we detected 92 loud outliers from vessels, aquaculture, and military mid-frequency active sonar. During one military mid-frequency active sonar event sound levels reached 45.8dB above median ambient noise levels. The differences found in the bays illustrate the importance of understanding soundscapes to effectively manage noise pollution in marine ecosystems.

Sound production patterns of big-clawed snapping shrimp (Alpheus spp.) are influenced by time-of-day and social context

Snapping shrimp are perhaps the most pervasive sources of biological sound in the ocean. The snapping sounds of cryptic shrimp colonies in shallow coastal habitats worldwide create a near-continuous crackling with high spatiotemporal variability, yet the underlying acoustic ecology is not well understood. This study investigated sound production rates and acoustic behavior of snapping shrimp species common in the Western Atlantic Ocean and Gulf of Mexico (Alpheus heterochaelis and Alpheus angulosus). Snap rates were measured in a controlled laboratory setting under natural light, temperature, and substrate conditions for shrimp held individually, in pairs, and in a ten-shrimp mesocosm, to test hypotheses that acoustic activity varies with time-of-day and social context. Spontaneous snapping was observed for 81 out of 84 solitary shrimp monitored. Time-of-day influenced snap output for individuals and same-sex pairs-higher rates occurred during dusk and night, compared to daylight hours, but this pattern was inconsistent for opposite-sex pairs and a mixed-sex group. These laboratory results provide insight into behavioral rhythms that may influence snapping patterns in natural populations, and underscore the limited understanding of a major sound source in marine environments.

Combining passive acoustics and imaging sonar techniques to study sperm whales' foraging strategies

Sperm whales forage in the deep ocean, hunting for squid. An innovative approach for the study of sperm whale foraging behavior and habitat selection is reported in this letter. A DIDSON imaging sonar mounted on a profiler with a conductivity, temperature, and depth sensor was used to count and measure potential prey in the deep ocean during sperm whales' acoustical foraging encounters in Hawaii. Preliminary results show how this technique can be applied to the study of deep diving whale foraging and habitat selection. Sperm whales foraged where the density of prey decreased with depth and where the size of prey increased with depth.

Connecting Earth observation to high-throughput biodiversity data

Understandably, given the fast pace of biodiversity loss, there is much interest in using Earth observation technology to track biodiversity, ecosystem functions and ecosystem services. However, because most biodiversity is invisible to Earth observation, indicators based on Earth observation could be misleading and reduce the effectiveness of nature conservation and even unintentionally decrease conservation effort. We describe an approach that combines automated recording devices, high-throughput DNA sequencing and modern ecological modelling to extract much more of the information available in Earth observation data. This approach is achievable now, offering efficient and near-real-time monitoring of management impacts on biodiversity and its functions and services.

Icelandic herring-eating killer whales feed at night

Herring-eating killer whales debilitate herring with underwater tail slaps and likely herd herring into tighter schools using a feeding-specific low-frequency pulsed call ('herding' call). Feeding on herring may be dependent upon daylight, as the whales use their white underside to help herd herring; however, feeding at night has not been investigated. The production of feeding-specific sounds provides an opportunity to use passive acoustic monitoring to investigate feeding behaviour at different times of day. We compared the acoustic behaviour of killer whales between day and night, using an autonomous recorder deployed in Iceland during winter. Based upon acoustic detection of underwater tail slaps used to feed upon herring we found that killer whales fed both at night and day: they spent 50% of their time at night and 73% of daytime feeding. Interestingly, there was a significant diel variation in acoustic behaviour. Herding calls were significantly associated with underwater tail slap rate and were recorded significantly more often at night, suggesting that in low-light conditions killer whales rely more on acoustics to herd herring. Communicative sounds were also related to underwater tail slap rate and produced at different rates during day and night. The capability to adapt feeding behaviour to different light conditions may be particularly relevant for predator species occurring in high latitudes during winter, when light availability is limited.

Temporal and spatial variation of beaked and sperm whales foraging activity in Hawai'i, as determined with passive acoustics

Beaked and sperm whales are top predators living in the waters off the Kona coast of Hawai'i. Temporal and spatial analyses of the foraging activity of these two species were studied with passive acoustics techniques. Three passive acoustics recorders moored to the ocean floor were used to monitor the foraging activity of these whales in three locations along the Kona coast of the island of Hawaii. Data were analyzed using automatic detector/classification systems: M3R (Marine Mammal Monitoring on Navy Ranges), and custom-designed Matlab programs. The temporal variation in foraging activity was species-specific: beaked whales foraged more at night in the north, and more during the day-time off Kailua-Kona. No day-time/night-time preference was found in the southern end of the sampling range. Sperm whales foraged mainly at night in the north, but no day-time/night-time preference was observed off Kailua-Kona and in the south. A Generalized Linear Model was then applied to assess whether location and chlorophyll concentration affected the foraging activity of each species. Chlorophyll concentration and location influenced the foraging activity of both these species of deep-diving odontocetes.

Indo-Pacific humpback dolphin occurrence north of Lantau Island, Hong Kong, based on year-round passive acoustic monitoring

Long-term passive acoustic monitoring (PAM) was conducted to study Indo-Pacific humpback dolphins, Sousa chinensis, as part of environmental impact assessments for several major coastal development projects in Hong Kong waters north of Lantau Island. Ecological acoustic recorders obtained 2711 days of recording at 13 sites from December 2012 to December 2014. Humpback dolphin sounds were manually detected on more than half of days with recordings at 12 sites, 8 of which were within proposed reclamation areas. Dolphin detection rates were greatest at Lung Kwu Chau, with other high-occurrence locations northeast of the Hong Kong International Airport and within the Lung Kwu Tan and Siu Ho Wan regions. Dolphin detection rates were greatest in summer and autumn (June-November) and were significantly reduced in spring (March-May) compared to other times of year. Click detection rates were significantly higher at night than during daylight hours. These findings suggest high use of many of the proposed reclamation/development areas by humpback dolphins, particularly at night, and demonstrate the value of long-term PAM for documenting spatial and temporal patterns in dolphin occurrence to help inform management decisions.

Temporal patterns in the soundscape of the shallow waters of a Mediterranean marine protected area

The study of marine soundscapes is an emerging field of research that contributes important information about biological compositions and environmental conditions. The seasonal and circadian soundscape trends of a marine protected area (MPA) in the Mediterranean Sea have been studied for one year using an autonomous acoustic recorder. Frequencies less than 1 kHz are dominated by noise generated by waves and are louder during the winter; conversely, higher frequencies (4–96 kHz) are dominated by snapping shrimp, which increase their acoustic activity at night during the summer. Fish choruses, below 2 kHz, characterize the soundscape at sunset during the summer. Because there are 13 vessel passages per hour on average, causing acoustic interference with fish choruses 46% of the time, this MPA cannot be considered to be protected from noise. On the basis of the high seasonal variability of the soundscape components, this study proposes a one-year acoustic monitoring protocol using the soundscape methodology approach and discusses the concept of MPA size.

Quantification of Boat Visitation Rates at Artificial and Natural Reefs in the Eastern Gulf of Mexico Using Acoustic Recorders

Artificial reefs are commonly used as a management tool, in part to provide ecosystem services, including opportunities for recreational fishing and diving. Quantifying the use of artificial reefs by recreational boaters is essential for determining their value as ecosystem services. In this study, four artificial–natural reef pairs in the eastern Gulf of Mexico (off western Florida) were investigated for boat visitation rates using autonomous acoustic recorders. Digital SpectroGram (DSG) recorders were used to collect sound files from April 2013 to March 2015. An automatic detection algorithm was used to identify boat noise in individual files using the harmonic peaks generated by boat engines, and by comparing the sound amplitude of each file with surrounding files. In all four pairs, visitation rates were significantly higher at the artificial reef than the natural reef. This increase in boat visitation was likely due to actual or perceived increased quality of fishing and diving at the artificial reefs, or to lack of knowledge of the presence or locations of the natural reefs. Inshore reefs (<15 m depth) had high variability in monthly visitation rates, which were generally highest in warmer months. However the seasonal signal was dampened on offshore reefs (>25 m depth). This study appears to be the first to use acoustic data to measure participant use of boating destinations, and highlights the utility of acoustic monitoring for the valuation of this important ecosystem service provided by artificial reefs.

Dual instrument passive acoustic monitoring of belugas in Cook Inlet, Alaska

As part of a long-term research program, Cook Inlet beluga (Delphinapterus leucas) presence was acoustically monitored with two types of acoustic sensors utilized in tandem in moorings deployed year-round: an ecological acoustic recorder (EAR) and a cetacean and porpoise detector (C-POD). The EAR was used primarily to record the calls, whistles, and buzzes produced by belugas and killer whales (Orcinus orca). The C-POD was used to log and classify echolocation clicks from belugas, killer whales, and porpoises. This paper describes mooring packages that maximized the chances of successful long-term data collection in the particularly challenging Cook Inlet environment, and presents an analytical comparison of odontocete detections obtained by the collocated EAR and C-POD instruments from two mooring locations in the upper inlet. Results from this study illustrate a significant improvement in detecting beluga and killer whale presence when the different acoustic signals detected by EARs and C-PODs are considered together. Further, results from concurrent porpoise detections indicating prey competition and feeding interference with beluga, and porpoise displacement due to ice formation are described.

Low-frequency signals produced by Northeast Atlantic killer whales (Orcinus orca)

Killer whale acoustic behavior has been extensively investigated; however, most studies have focused on pulsed calls and whistles. This study reports the production of low-frequency signals by killer whales at frequencies below 300 Hz. Recordings were made in Iceland and Norway when killer whales were observed feeding on herring and no other marine mammal species were nearby. Low-frequency sounds were identified in Iceland and ranged in duration between 0.14 and 2.77 s and in frequency between 50 and 270 Hz, well below the previously reported lower limit for killer whale tonal sounds of 500 Hz. Low-frequency sounds appeared to be produced close in time to tail slaps, which are indicative of feeding attempts, suggesting that these sounds may be related to a feeding context. However, their precise function is unknown, and they could be the by-product of a non-vocal behavior rather than a vocal signal deliberately produced by the whales. Although killer whales in Norway exhibit similar feeding behavior, this sound has not been detected in recordings from Norway to date. This study suggests that, like other delphinids, killer whales produce low-frequency sounds, but further studies will be required to understand whether similar sounds exist in other killer whale populations.

The Curious Acoustic Behavior of Estuarine Snapping Shrimp: Temporal Patterns of Snapping Shrimp Sound in Sub-Tidal Oyster Reef Habitat

Ocean soundscapes convey important sensory information to marine life. Like many mid-to-low latitude coastal areas worldwide, the high-frequency (>1.5 kHz) soundscape of oyster reef habitat within the West Bay Marine Reserve (36°N, 76°W) is dominated by the impulsive, short-duration signals generated by snapping shrimp. Between June 2011 and July 2012, a single hydrophone deployed within West Bay was programmed to record 60 or 30 seconds of acoustic data every 15 or 30 minutes. Envelope correlation and amplitude information were then used to count shrimp snaps within these recordings. The observed snap rates vary from 1500-2000 snaps per minute during summer to <100 snaps per minute during winter. Sound pressure levels are positively correlated with snap rate (r = 0.71-0.92) and vary seasonally by ~15 decibels in the 1.5-20 kHz range. Snap rates are positively correlated with water temperatures (r = 0.81-0.93), as well as potentially influenced by climate-driven changes in water quality. Light availability modulates snap rate on diurnal time scales, with most days exhibiting a significant preference for either nighttime or daytime snapping, and many showing additional crepuscular increases. During mid-summer, the number of snaps occurring at night is 5-10% more than predicted by a random model; however, this pattern is reversed between August and April, with an excess of up to 25% more snaps recorded during the day in the mid-winter. Diurnal variability in sound pressure levels is largest in the mid-winter, when the overall rate of snapping is at its lowest, and the percentage difference between daytime and nighttime activity is at its highest. This work highlights our lack of knowledge regarding the ecology and acoustic behavior of one of the most dominant soniforous invertebrate species in coastal systems. It also underscores the necessity of long-duration, high-temporal-resolution sampling in efforts to understand the bioacoustics of animal behaviors and associated changes within the marine soundscape.

Does Primary Productivity Turn Up the Volume? Exploring the Relationship Between Chlorophyll a and the Soundscape of Coral Reefs in the Pacific

Chlorophyll is the basis for ecosystem productivity in most marine environments. We report on an ongoing effort to examine whether ambient sounds are tied to chlorophyll levels. We hypothesized that an increase in food-web available energy will be distributed across trophic levels, eventually reaching sound-producing animals and increasing acoustic levels. To test our hypothesis, we compared reef environments to explore links between soundscapes and chlorophyll a concentrations. The study sites resided in disparate oceanographic regimes that experienced substantially different oceanographic conditions. We anticipated that the results would show differing patterns of primary productivity between sites and therefore would be reflected in the soundscapes.

Acoustic Communication in Butterflyfishes: Anatomical Novelties, Physiology, Evolution, and Behavioral Ecology

Coral reef fishes live in noisy environments that may challenge their capacity for acoustic communication. Butterflyfishes (Family Chaetodontidae) are prominent and ecologically diverse members of coral reef communities worldwide. The discovery of a novel association of anterior swim bladder horns with the lateral line canal system in the genus Chaetodon (the laterophysic connection) revealed a putative adaptation for enhancement of sound reception by the lateral line system and/or the ear. Behavioral studies show that acoustic communication is an important component of butterflyfish social behavior. All bannerfish (Forcipiger, Heniochus, and Hemitaurichthys) and Chaetodon species studied thus far produce several sound types at frequencies of <1 to >1000 Hz. Ancestral character state analyses predict the existence of both shared (head bob) and divergent (tail slap) acoustic behaviors in these two clades. Experimental auditory physiology shows that butterflyfishes are primarily sensitive to stimuli associated with hydrodynamic particle accelerations of ≤500 Hz. In addition, the gas-filled swim bladder horns in Chaetodon are stimulated by sound pressure, which enhances and extends their auditory sensitivity to 1700-2000 Hz. The broadband spectrum of ambient noise present on coral reefs overlaps with the frequency characteristics of their sounds, thus both the close social affiliations common among butterflyfishes and the evolution of the swim bladder horns in Chaetodon facilitate their short-range acoustic communication. Butterflyfishes provide a unique and unexpected opportunity to carry out studies of fish bioacoustics in the lab and the field that integrate the study of sensory anatomy, physiology, evolution, and behavioral ecology.

Humpback whale (Megaptera novaeangliae) song unit and phrase repertoire progression on a subarctic feeding ground

The songs of the male humpback whales have traditionally been associated with breeding activities at low latitude breeding grounds during winter. This study provides the first detailed analysis of humpback whale songs recorded in the subarctic waters of Iceland using passive acoustic recorders. Recordings were collected during three winter seasons: 2008-2009, 2009-2010, and 2011 during which singing was detected in all seasons. Peak song occurrence was during January-February in all years; this coincides with the timing of the peak breeding season of humpback whales in the Northern hemisphere. A total of 2810 song units from all years were measured and statistically divided into 14 groups, which constructed 25 phrases. The song unit repertoires included stable song unit types that occurred frequently in songs during all years while the occurrence of other song unit types varied more between years. Around 60% of the phrases were conserved between the first two study seasons, while the majority of phrases found during the last study season had not been observed before. This study indicates the importance of a subarctic feeding ground for song progression and song exchange and possibly as an opportunistic mating ground for migrating or overwintering humpback whales.