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For: Wallace RJ, Sasson G, Garnsworthy PC, Tapio I, Gregson E, Bani P, Huhtanen P, Bayat AR, Strozzi F, Biscarini F, Snelling TJ, Saunders N, Potterton SL, Craigon J, Minuti A, Trevisi E, Callegari ML, Cappelli FP, Cabezas-Garcia EH, Vilkki J, Pinares-Patino C, Fliegerová KO, Mrázek J, Sechovcová H, Kopečný J, Bonin A, Boyer F, Taberlet P, Kokou F, Halperin E, Williams JL, Shingfield KJ, Mizrahi I. A heritable subset of the core rumen microbiome dictates dairy cow productivity and emissions. Sci Adv 2019;5:eaav8391. [PMID: 31281883 PMCID: PMC6609165 DOI: 10.1126/sciadv.aav8391] [Citation(s) in RCA: 217] [Impact Index Per Article: 36.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/24/2018] [Accepted: 05/30/2019] [Indexed: 05/19/2023]
Number Cited by Other Article(s)
1
Wu Z, Famous M, Stoikidou T, Bowden FES, Dominic G, Huws SA, Godoy-Santos F, Oyama LB. Unravelling AMR dynamics in the rumenofaecobiome: Insights, challenges and implications for One Health. Int J Antimicrob Agents 2025;66:107494. [PMID: 40120959 DOI: 10.1016/j.ijantimicag.2025.107494] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/10/2024] [Revised: 03/01/2025] [Accepted: 03/13/2025] [Indexed: 03/25/2025]
2
Badhan A, Wang Y, Terry S, Gruninger R, Guan LL, McAllister TA. Invited review: Interplay of rumen microbiome and the cattle host in modulating feed efficiency and methane emissions. J Dairy Sci 2025;108:5489-5501. [PMID: 40221043 DOI: 10.3168/jds.2024-26063] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/23/2024] [Accepted: 03/04/2025] [Indexed: 04/14/2025]
3
Xie X, Yang H, Zhao X, Teng L, Yang Y, Luo H. Potential role of key rumen microbes in regulating host health and growth performance in Hu sheep. Anim Microbiome 2025;7:51. [PMID: 40414888 PMCID: PMC12103811 DOI: 10.1186/s42523-025-00412-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/03/2024] [Accepted: 04/16/2025] [Indexed: 05/27/2025]  Open
4
Shan X, Li K, Stadler P, Borbor M, Reyes G, Solórzano R, Chamorro E, Bayot B, Cordero OX. Microbiome determinants of productivity in aquaculture of whiteleg shrimp. Appl Environ Microbiol 2025;91:e0242024. [PMID: 40231846 DOI: 10.1128/aem.02420-24] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/11/2024] [Accepted: 03/13/2025] [Indexed: 04/16/2025]  Open
5
Brulin L, Sanchez MP, Cai Z, Ducrocq S, Even G, Martel S, Merlin S, Audebert C, Estellé J, Sahana G, Croiseau P. Sequence-based genome-wide association study reveals host genomic regions and candidate genes influencing the fecal microbiota of Holstein cows. J Dairy Sci 2025:S0022-0302(25)00361-3. [PMID: 40383381 DOI: 10.3168/jds.2024-26203] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/20/2024] [Accepted: 04/29/2025] [Indexed: 05/20/2025]
6
Fu R, Han L, Li Q, Li Z, Dai Y, Leng J. Studies on the concerted interaction of microbes in the gastrointestinal tract of ruminants on lignocellulose and its degradation mechanism. Front Microbiol 2025;16:1554271. [PMID: 40415943 PMCID: PMC12098361 DOI: 10.3389/fmicb.2025.1554271] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/01/2025] [Accepted: 04/04/2025] [Indexed: 05/27/2025]  Open
7
Litichevskiy L, Considine M, Gill J, Shandar V, Cox TO, Descamps HC, Wright KM, Amses KR, Dohnalová L, Liou MJ, Tetlak M, Galindo-Fiallos MR, Wong AC, Lundgren P, Kim J, Uhr GT, Rahman RJ, Mason S, Merenstein C, Bushman FD, Raj A, Harding F, Chen Z, Prateek GV, Mullis M, Deighan AG, Robinson L, Tanes C, Bittinger K, Chakraborty M, Bhatt AS, Li H, Barnett I, Davenport ER, Broman KW, Levy M, Cohen RL, Botstein D, Freund A, Di Francesco A, Churchill GA, Li M, Thaiss CA. Gut metagenomes reveal interactions between dietary restriction, ageing and the microbiome in genetically diverse mice. Nat Microbiol 2025;10:1240-1257. [PMID: 40164832 DOI: 10.1038/s41564-025-01963-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/04/2024] [Accepted: 02/19/2025] [Indexed: 04/02/2025]
8
Ur Rahman Shah SA, Hao Y, Tang B, Ahmad M, He D, Nabi G, Zheng J, Wan X, Wang C, Wang K. The association of seasonal dietary shift with fecal metabolome and microbiota in the captive Yangtze finless porpoise (Neophocaena asiaeorientalis asiaeorientalis). ENVIRONMENTAL RESEARCH 2025;271:121082. [PMID: 39929417 DOI: 10.1016/j.envres.2025.121082] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/17/2024] [Revised: 02/06/2025] [Accepted: 02/07/2025] [Indexed: 02/18/2025]
9
Feng X, Liu Y, Xu S, Ma J, Yuan H, Wang H, Hu J, Jin S, Liu S, Zhong J, Ma T, Tu Y. Functional analysis of Parabacteroides distasonis F4: a novel probiotic strain linked to calf growth and rumen fermentation. J Anim Sci Biotechnol 2025;16:50. [PMID: 40181465 PMCID: PMC11969818 DOI: 10.1186/s40104-025-01182-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/14/2024] [Accepted: 02/19/2025] [Indexed: 04/05/2025]  Open
10
Tardiolo G, La Fauci D, Riggio V, Daghio M, Di Salvo E, Zumbo A, Sutera AM. Gut Microbiota of Ruminants and Monogastric Livestock: An Overview. Animals (Basel) 2025;15:758. [PMID: 40076043 PMCID: PMC11899476 DOI: 10.3390/ani15050758] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/30/2025] [Revised: 03/02/2025] [Accepted: 03/04/2025] [Indexed: 03/14/2025]  Open
11
Xu J, Li X, Fan Q, Zhao S, Jiao T. Effects of Yeast Culture on Lamb Growth Performance, Rumen Microbiota, and Metabolites. Animals (Basel) 2025;15:738. [PMID: 40076021 PMCID: PMC11899153 DOI: 10.3390/ani15050738] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/01/2025] [Revised: 02/24/2025] [Accepted: 02/28/2025] [Indexed: 03/14/2025]  Open
12
Zhang Q, Guo T, Wang X, Wei L, Wang Y, Li S, Liu H, Zhao N, Xu S. Response of rumen methane production and microbial community to different abatement strategies in yaks. BMC Microbiol 2025;25:111. [PMID: 40025454 PMCID: PMC11874123 DOI: 10.1186/s12866-025-03817-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/03/2024] [Accepted: 02/10/2025] [Indexed: 03/04/2025]  Open
13
Hai C, Wang L, Wu D, Pei D, Yang Y, Liu X, Zhao Y, Bai C, Su G, Bao Z, Yang L, Li G. Loss of Myostatin leads to low production of CH4 by altering rumen microbiota and metabolome in cattle. Int J Biol Macromol 2025;294:139533. [PMID: 39761884 DOI: 10.1016/j.ijbiomac.2025.139533] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/19/2024] [Revised: 01/01/2025] [Accepted: 01/03/2025] [Indexed: 02/20/2025]
14
Wang C, Zhao J, Zhao W, Xue L, Chen Y, Tian J, Wang H, Ji X, Tian X, Zhang J, Gu Y. A comparative study of the composition of microorganisms and metabolites in different β-casein genetic types of dairy cows based on metagenomics and non-targeted metabolomics. Food Res Int 2025;204:115859. [PMID: 39986751 DOI: 10.1016/j.foodres.2025.115859] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/06/2024] [Revised: 01/24/2025] [Accepted: 01/24/2025] [Indexed: 02/24/2025]
15
Liu J, Zhou M, Zhou L, Dang R, Xiao L, Tan Y, Li M, Yu J, Zhang P, Hernández M, Lichtfouse E. Methane production related to microbiota in dairy cattle feces. ENVIRONMENTAL RESEARCH 2025;267:120642. [PMID: 39701354 DOI: 10.1016/j.envres.2024.120642] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/05/2024] [Revised: 12/12/2024] [Accepted: 12/13/2024] [Indexed: 12/21/2024]
16
Plata G, Srinivasan K, Krishnamurthy M, Herron L, Dixit P. Designing host-associated microbiomes using the consumer/resource model. mSystems 2025;10:e0106824. [PMID: 39651880 PMCID: PMC11748559 DOI: 10.1128/msystems.01068-24] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/22/2024] [Accepted: 11/06/2024] [Indexed: 12/18/2024]  Open
17
Dijkstra J, Bannink A, Congio GFS, Ellis JL, Eugène M, Garcia F, Niu M, Vibart RE, Yáñez-Ruiz DR, Kebreab E. Feed additives for methane mitigation: Modeling the impact of feed additives on enteric methane emission of ruminants-Approaches and recommendations. J Dairy Sci 2025;108:356-374. [PMID: 39725502 DOI: 10.3168/jds.2024-25049] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/15/2024] [Accepted: 09/02/2024] [Indexed: 12/28/2024]
18
Callaway T, Perez HG, Corcionivoschi N, Bu D, Fluharty FL. The Holobiont concept in ruminant physiology - more of the same, or something new and meaningful to food quality, food security, and animal health? J Dairy Sci 2024:S0022-0302(24)01427-9. [PMID: 39710259 DOI: 10.3168/jds.2024-25847] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/09/2024] [Accepted: 12/01/2024] [Indexed: 12/24/2024]
19
Mavrides DE, Liapi M, Ierodiakonou D, Pipis C, Malas S, Gentekaki E, Tsaousis AD. The cow GUTBIOME CY study: investigating the composition of the cattle gut microbiome in health and infectious disease transmission in cyprus. BMC Vet Res 2024;20:566. [PMID: 39696220 DOI: 10.1186/s12917-024-04419-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/16/2024] [Accepted: 11/29/2024] [Indexed: 12/20/2024]  Open
20
Jiang X, Geng H, Zhang C, Zhu Y, Zhu M, Feng D, Wang D, Yao J, Deng L. Circadian Rhythm Enhances mTORC1/AMPK Pathway-Mediated Milk Fat Synthesis in Dairy Cows via the Microbial Metabolite Acetic Acid. JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY 2024;72:28178-28193. [PMID: 39630106 DOI: 10.1021/acs.jafc.4c07488] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/19/2024]
21
Frazier AN, Beck MR, Waldrip H, Koziel JA. Connecting the ruminant microbiome to climate change: insights from current ecological and evolutionary concepts. Front Microbiol 2024;15:1503315. [PMID: 39687868 PMCID: PMC11646987 DOI: 10.3389/fmicb.2024.1503315] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/28/2024] [Accepted: 11/11/2024] [Indexed: 12/18/2024]  Open
22
Morris AH, Bohannan BJM. Estimates of microbiome heritability across hosts. Nat Microbiol 2024;9:3110-3119. [PMID: 39548346 DOI: 10.1038/s41564-024-01865-w] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/07/2023] [Accepted: 10/15/2024] [Indexed: 11/17/2024]
23
Quilcate C, Estrada R, Romero Y, Rojas D, Mamani R, Hañari-Quispe RD, Aliaga M, Galindo W, Vásquez HV, Maicelo JL, Arbizu CI. Changes in Gut Microbiota in Peruvian Cattle Genetic Nucleus by Breed and Correlations with Beef Quality. Vet Sci 2024;11:608. [PMID: 39728948 DOI: 10.3390/vetsci11120608] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/12/2024] [Revised: 11/26/2024] [Accepted: 11/27/2024] [Indexed: 12/28/2024]  Open
24
Zhao Y, Tan J, Fang L, Jiang L. Harnessing meta-omics to unveil and mitigate methane emissions in ruminants: Integrative approaches and future directions. THE SCIENCE OF THE TOTAL ENVIRONMENT 2024;951:175732. [PMID: 39182764 DOI: 10.1016/j.scitotenv.2024.175732] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/06/2024] [Revised: 08/17/2024] [Accepted: 08/21/2024] [Indexed: 08/27/2024]
25
Bai H, Lai Z, Zhang J, Zheng X, Zhang J, Jin W, Lin L, Mao S. Host genetic regulation of specific functional groups in the rumen microbiome of dairy cows: Implications for lactation trait. J Adv Res 2024:S2090-1232(24)00531-9. [PMID: 39537026 DOI: 10.1016/j.jare.2024.11.012] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/16/2024] [Revised: 10/29/2024] [Accepted: 11/10/2024] [Indexed: 11/16/2024]  Open
26
Zhang C, Liu H, Jiang X, Zhang Z, Hou X, Wang Y, Wang D, Li Z, Cao Y, Wu S, Huws SA, Yao J. An integrated microbiome- and metabolome-genome-wide association study reveals the role of heritable ruminal microbial carbohydrate metabolism in lactation performance in Holstein dairy cows. MICROBIOME 2024;12:232. [PMID: 39529146 PMCID: PMC11555892 DOI: 10.1186/s40168-024-01937-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 03/08/2024] [Accepted: 09/20/2024] [Indexed: 11/16/2024]
27
Worku D. Unraveling the genetic basis of methane emission in dairy cattle: a comprehensive exploration and breeding approach to lower methane emissions. Anim Biotechnol 2024;35:2362677. [PMID: 38860914 DOI: 10.1080/10495398.2024.2362677] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/12/2024]
28
Lu ML, Yuan GH, Rehemujiang H, Li CC, Hu LH, Duan PP, Zhang LD, Diao QY, Deng KD, Xu GS. Effects of spent substrate of oyster mushroom (Pleurotus ostreatus) on ruminal fermentation, microbial community and growth performance in Hu sheep. Front Microbiol 2024;15:1425218. [PMID: 39507332 PMCID: PMC11538048 DOI: 10.3389/fmicb.2024.1425218] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/30/2024] [Accepted: 10/11/2024] [Indexed: 11/08/2024]  Open
29
Zhuang Y, Liu S, Gao D, Xu Y, Jiang W, Hou G, Li S, Zhao X, Chen T, Li S, Zhang S, Huang Y, Wang J, Xiao J, Li M, Wang W, Li S, Cao Z. Maternal gastrointestinal microbiome shapes gut microbial function and resistome of newborns in a cow-to-calf model. MICROBIOME 2024;12:216. [PMID: 39438998 PMCID: PMC11495063 DOI: 10.1186/s40168-024-01943-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/22/2024] [Accepted: 10/02/2024] [Indexed: 10/25/2024]
30
Tian X, Zhou J, Qin Y, Zhang K, Sun W, Lai SJ, Jia X, Chen SY. Parameter Estimation of Host Genomic and Gut Microbiota Contribution to Growth and Feed Efficiency Traits in Meat Rabbits. Microorganisms 2024;12:2091. [PMID: 39458400 PMCID: PMC11510101 DOI: 10.3390/microorganisms12102091] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/02/2024] [Revised: 10/10/2024] [Accepted: 10/17/2024] [Indexed: 10/28/2024]  Open
31
Wang W, Wei Z, Li Z, Ren J, Song Y, Xu J, Liu A, Li X, Li M, Fan H, Jin L, Niyazbekova Z, Wang W, Gao Y, Jiang Y, Yao J, Li F, Wu S, Wang Y. Integrating genome- and transcriptome-wide association studies to uncover the host-microbiome interactions in bovine rumen methanogenesis. IMETA 2024;3:e234. [PMID: 39429883 PMCID: PMC11487568 DOI: 10.1002/imt2.234] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 07/25/2024] [Revised: 08/12/2024] [Accepted: 08/14/2024] [Indexed: 10/22/2024]
32
Brulin L, Ducrocq S, Estellé J, Even G, Martel S, Merlin S, Audebert C, Croiseau P, Sanchez MP. The fecal microbiota of Holstein cows is heritable and genetically correlated to dairy performances. J Dairy Sci 2024:S0022-0302(24)01113-5. [PMID: 39245169 DOI: 10.3168/jds.2024-25003] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/03/2024] [Accepted: 08/08/2024] [Indexed: 09/10/2024]
33
Lima J, Martínez-Álvaro M, Mattock J, Auffret MD, Duthie CA, Cleveland MA, Dewhurst RJ, Watson M, Roehe R. Temporal stability of the rumen microbiome and its longitudinal associations with performance traits in beef cattle. Sci Rep 2024;14:20772. [PMID: 39237607 PMCID: PMC11377694 DOI: 10.1038/s41598-024-70770-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/11/2024] [Accepted: 08/21/2024] [Indexed: 09/07/2024]  Open
34
Zhao X, Zhang Y, Rahman A, Chen M, Li N, Wu T, Qi Y, Zheng N, Zhao S, Wang J. Rumen microbiota succession throughout the perinatal period and its association with postpartum production traits in dairy cows: A review. ANIMAL NUTRITION (ZHONGGUO XU MU SHOU YI XUE HUI) 2024;18:17-26. [PMID: 39022774 PMCID: PMC11253274 DOI: 10.1016/j.aninu.2024.04.013] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 07/07/2023] [Revised: 02/18/2024] [Accepted: 04/24/2024] [Indexed: 07/20/2024]
35
Marcos CN, Carro MD, Gutiérrez-Rivas M, Atxaerandio R, Goiri I, García-Rodríguez A, González-Recio O. Ruminal microbiome changes across lactation in primiparous Holstein cows with varying methane intensity: Heritability assessment. J Dairy Sci 2024;107:7064-7078. [PMID: 38788852 DOI: 10.3168/jds.2023-24552] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/15/2023] [Accepted: 04/02/2024] [Indexed: 05/26/2024]
36
Brulin L, Ducrocq S, Even G, Sanchez MP, Martel S, Merlin S, Audebert C, Croiseau P, Estellé J. Characterization of bovine vaginal microbiota using 16S rRNA sequencing: associations with host fertility, longevity, health, and production. Sci Rep 2024;14:19277. [PMID: 39164272 PMCID: PMC11336114 DOI: 10.1038/s41598-024-69715-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/10/2023] [Accepted: 08/07/2024] [Indexed: 08/22/2024]  Open
37
Plata G, Srinivasan K, Krishnamurthy M, Herron L, Dixit P. Designing host-associated microbiomes using the consumer/resource model. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2024:2023.04.28.538625. [PMID: 37162888 PMCID: PMC10168316 DOI: 10.1101/2023.04.28.538625] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/11/2023]
38
Wang H, Zhan J, Jiang H, Jia H, Pan Y, Zhong X, Huo J, Zhao S. Metagenomics-Metabolomics Exploration of Three-Way-Crossbreeding Effects on Rumen to Provide Basis for Crossbreeding Improvement of Sheep Microbiome and Metabolome of Sheep. Animals (Basel) 2024;14:2256. [PMID: 39123781 PMCID: PMC11311065 DOI: 10.3390/ani14152256] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/27/2024] [Revised: 07/30/2024] [Accepted: 07/31/2024] [Indexed: 08/12/2024]  Open
39
Toyber I, Kumar R, Jami E. Rumen protozoa are a hub for diverse hydrogenotrophic functions. ENVIRONMENTAL MICROBIOLOGY REPORTS 2024;16:e13298. [PMID: 38961629 PMCID: PMC11222294 DOI: 10.1111/1758-2229.13298] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/18/2024] [Accepted: 05/08/2024] [Indexed: 07/05/2024]
40
Stapleton TE, Lindsey LM, Sundar H, Dearing MD. Rodents consuming the same toxic diet harbor a unique functional core microbiome. Anim Microbiome 2024;6:43. [PMID: 39080711 PMCID: PMC11289948 DOI: 10.1186/s42523-024-00330-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/30/2024] [Accepted: 07/16/2024] [Indexed: 08/02/2024]  Open
41
Nanetti E, Scicchitano D, Palladino G, Interino N, Corlatti L, Pedrotti L, Zanetti F, Pagani E, Esposito E, Brambilla A, Grignolio S, Marotti I, Turroni S, Fiori J, Rampelli S, Candela M. The Alpine ibex (Capra ibex) gut microbiome, seasonal dynamics, and potential application in lignocellulose bioconversion. iScience 2024;27:110194. [PMID: 38989465 PMCID: PMC11233967 DOI: 10.1016/j.isci.2024.110194] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/01/2024] [Revised: 04/24/2024] [Accepted: 06/03/2024] [Indexed: 07/12/2024]  Open
42
Hungerford NL, Ouwerkerk D, Gilbert RA, Loh ZH, Gordon RJ, Silva LFP, Fletcher MT. A Feeding Trial to Investigate Strategies to Mitigate the Impacts of Pimelea Poisoning in Australian Cattle. JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY 2024;72:15572-15585. [PMID: 38958707 DOI: 10.1021/acs.jafc.4c02082] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 07/04/2024]
43
Fang X, Liu H, Du Y, Jiang L, Gao F, Wang Z, Chi Z, Shi B, Zhao X. Bacillus siamensis Targeted Screening from Highly Colitis-Resistant Pigs Can Alleviate Ulcerative Colitis in Mice. RESEARCH (WASHINGTON, D.C.) 2024;7:0415. [PMID: 39015206 PMCID: PMC11249912 DOI: 10.34133/research.0415] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 04/15/2024] [Accepted: 05/28/2024] [Indexed: 07/18/2024]
44
Gilbert SF. Inter-kingdom communication and the sympoietic way of life. Front Cell Dev Biol 2024;12:1427798. [PMID: 39071805 PMCID: PMC11275584 DOI: 10.3389/fcell.2024.1427798] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/04/2024] [Accepted: 06/26/2024] [Indexed: 07/30/2024]  Open
45
Raza SHA, Khan M, Ni X, Zhao X, Yang H, Jiang Y, Danzeng B, Ouyang Y, Pant SD, Zhong R, Quan G. Association of litter size with the ruminal microbiome structure and metabolomic profile in goats. Sci Rep 2024;14:15476. [PMID: 38969828 PMCID: PMC11226442 DOI: 10.1038/s41598-024-66200-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/27/2024] [Accepted: 06/28/2024] [Indexed: 07/07/2024]  Open
46
Boyle JA, Frederickson ME, Stinchcombe JR. Genetic architecture of heritable leaf microbes. Microbiol Spectr 2024;12:e0061024. [PMID: 38842309 PMCID: PMC11218475 DOI: 10.1128/spectrum.00610-24] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/06/2024] [Accepted: 05/02/2024] [Indexed: 06/07/2024]  Open
47
Marinho MN, Perdomo MC, Simões BS, Husnain A, Arshad U, Figueiredo CC, Santos JEP. Dietary supplementation of rumen native microbes improves lactation performance and feed efficiency in dairy cows. J Dairy Sci 2024:S0022-0302(24)00920-2. [PMID: 38876222 DOI: 10.3168/jds.2024-24795] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/16/2024] [Accepted: 05/11/2024] [Indexed: 06/16/2024]
48
Qadri QR, Lai X, Zhao W, Zhang Z, Zhao Q, Ma P, Pan Y, Wang Q. Exploring the Interplay between the Hologenome and Complex Traits in Bovine and Porcine Animals Using Genome-Wide Association Analysis. Int J Mol Sci 2024;25:6234. [PMID: 38892420 PMCID: PMC11172659 DOI: 10.3390/ijms25116234] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/15/2024] [Revised: 05/25/2024] [Accepted: 05/29/2024] [Indexed: 06/21/2024]  Open
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Shinkai T, Takizawa S, Enishi O, Higuchi K, Ohmori H, Mitsumori M. Characteristics of rumen microbiota and Prevotella isolates found in high propionate and low methane-producing dairy cows. Front Microbiol 2024;15:1404991. [PMID: 38887715 PMCID: PMC11180796 DOI: 10.3389/fmicb.2024.1404991] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/22/2024] [Accepted: 05/21/2024] [Indexed: 06/20/2024]  Open
50
Peng Z, Fujino M, Anand M, Uyeno Y. Feeding Astragalus membranaceus Root Improves the Rumen Fermentation Rate in Housed Goats through the Alteration of the Rumen Community Composition. Microorganisms 2024;12:1067. [PMID: 38930452 PMCID: PMC11205705 DOI: 10.3390/microorganisms12061067] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/29/2024] [Revised: 05/17/2024] [Accepted: 05/22/2024] [Indexed: 06/28/2024]  Open
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