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For: Williams A, Chiles EN, Conetta D, Pathmanathan JS, Cleves PA, Putnam HM, Su X, Bhattacharya D. Metabolomic shifts associated with heat stress in coral holobionts. Sci Adv 2021;7:eabd4210. [PMID: 33523848 PMCID: PMC7775768 DOI: 10.1126/sciadv.abd4210] [Citation(s) in RCA: 34] [Impact Index Per Article: 8.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 06/19/2020] [Accepted: 11/06/2020] [Indexed: 05/26/2023]
Number Cited by Other Article(s)
1
Keneally C, Chilton D, Dornan TN, Kidd SP, Gaget V, Toomes A, Lassaline C, Petrovski R, Wood L, Brookes JD. Multi-omics reveal microbial succession and metabolomic adaptations to flood in a hypersaline coastal lagoon. WATER RESEARCH 2025;280:123511. [PMID: 40147302 DOI: 10.1016/j.watres.2025.123511] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/03/2024] [Revised: 03/02/2025] [Accepted: 03/15/2025] [Indexed: 03/29/2025]
2
Chille EE, Stephens TG, Nandi S, Jiang H, Gerdes MJ, Williamson OM, Neufeld A, Montoya‐Maya P, Bhattacharya D. Coral Restoration in the Omics Era: Development of Point-of-Care Tools for Monitoring Disease, Reproduction, and Thermal Stress. Bioessays 2025;47:e70007. [PMID: 40285547 PMCID: PMC12101048 DOI: 10.1002/bies.70007] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/13/2024] [Revised: 03/31/2025] [Accepted: 04/01/2025] [Indexed: 04/29/2025]
3
Chan WY, Sakamoto R, Doering T, Narayana VK, De Souza DP, McConville MJ, van Oppen MJH. Heat-Evolved Microalgae (Symbiodiniaceae) Are Stable Symbionts and Influence Thermal Tolerance of the Sea Anemone Exaiptasia diaphana. Environ Microbiol 2025;27:e70011. [PMID: 39838803 PMCID: PMC11751664 DOI: 10.1111/1462-2920.70011] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/24/2024] [Revised: 11/04/2024] [Accepted: 11/27/2024] [Indexed: 01/23/2025]
4
Yang Y, Lu Z, Ye H, Li J, Zhou Y, Zhang L, Deng G, Li Z. Proteomic and metabolomic insights into the mechanisms of calcium-mediated salt stress tolerance in hemp. PLANT MOLECULAR BIOLOGY 2024;114:126. [PMID: 39557670 DOI: 10.1007/s11103-024-01525-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/13/2024] [Accepted: 10/17/2024] [Indexed: 11/20/2024]
5
Huffmyer AS, Ashey J, Strand E, Chiles EN, Su X, Putnam HM. Coral larvae increase nitrogen assimilation to stabilize algal symbiosis and combat bleaching under increased temperature. PLoS Biol 2024;22:e3002875. [PMID: 39531470 PMCID: PMC11556732 DOI: 10.1371/journal.pbio.3002875] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/10/2024] [Accepted: 10/01/2024] [Indexed: 11/16/2024]  Open
6
Farag MA, Saied DB, Afifi SM, Kunzmann A, Wessjohann LA, Westphal H, Kühnhold H, Stuhr M. Metabolic responses of sea anemone and jellyfish to temperature and UV bleaching: Insights into stress adaptation using LCMS-based metabolomics, molecular networking and chemometrics. J Adv Res 2024:S2090-1232(24)00461-2. [PMID: 39414229 DOI: 10.1016/j.jare.2024.10.007] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/07/2024] [Revised: 08/29/2024] [Accepted: 10/10/2024] [Indexed: 10/18/2024]  Open
7
Liu F, Deroy C, Herr AE. Microfluidics for macrofluidics: addressing marine-ecosystem challenges in an era of climate change. LAB ON A CHIP 2024;24:4007-4027. [PMID: 39093009 DOI: 10.1039/d4lc00468j] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 08/04/2024]
8
Chille EE, Stephens TG, Misri D, Strand EL, Putnam HM, Bhattacharya D. Gene expression response under thermal stress in two Hawaiian corals is dominated by ploidy and genotype. Ecol Evol 2024;14:e70037. [PMID: 39050655 PMCID: PMC11268936 DOI: 10.1002/ece3.70037] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/14/2024] [Revised: 06/03/2024] [Accepted: 07/09/2024] [Indexed: 07/27/2024]  Open
9
Huang S, Luo L, Wen B, Liu X, Yu K, Zhang M. Metabolic signatures of two scleractinian corals from the northern South China sea in response to extreme high temperature events. MARINE ENVIRONMENTAL RESEARCH 2024;198:106490. [PMID: 38636276 DOI: 10.1016/j.marenvres.2024.106490] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/28/2023] [Revised: 03/27/2024] [Accepted: 04/04/2024] [Indexed: 04/20/2024]
10
Williams A. Multiomics data integration, limitations, and prospects to reveal the metabolic activity of the coral holobiont. FEMS Microbiol Ecol 2024;100:fiae058. [PMID: 38653719 PMCID: PMC11067971 DOI: 10.1093/femsec/fiae058] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/26/2023] [Revised: 03/25/2024] [Accepted: 04/22/2024] [Indexed: 04/25/2024]  Open
11
Yang X, Wang J, Chang CY, Zhou F, Liu J, Xu H, Ibrahim M, Gomez M, Guo GL, Liu H, Zong WX, Wondisford FE, Su X, White E, Feng Z, Hu W. Leukemia inhibitory factor suppresses hepatic de novo lipogenesis and induces cachexia in mice. Nat Commun 2024;15:627. [PMID: 38245529 PMCID: PMC10799847 DOI: 10.1038/s41467-024-44924-w] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/24/2023] [Accepted: 01/08/2024] [Indexed: 01/22/2024]  Open
12
Ishida H, John U, Murray SA, Bhattacharya D, Chan CX. Developing model systems for dinoflagellates in the post-genomic era. JOURNAL OF PHYCOLOGY 2023;59:799-808. [PMID: 37657822 DOI: 10.1111/jpy.13386] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/14/2023] [Accepted: 08/16/2023] [Indexed: 09/03/2023]
13
Minen RI, Thirumalaikumar VP, Skirycz A. Proteinogenic dipeptides, an emerging class of small-molecule regulators. CURRENT OPINION IN PLANT BIOLOGY 2023;75:102395. [PMID: 37311365 DOI: 10.1016/j.pbi.2023.102395] [Citation(s) in RCA: 7] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/10/2023] [Revised: 05/07/2023] [Accepted: 05/10/2023] [Indexed: 06/15/2023]
14
Wang C, Zheng X, Kvitt H, Sheng H, Sun D, Niu G, Tchernov D, Shi T. Lineage-specific symbionts mediate differential coral responses to thermal stress. MICROBIOME 2023;11:211. [PMID: 37752514 PMCID: PMC10521517 DOI: 10.1186/s40168-023-01653-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/29/2022] [Accepted: 08/23/2023] [Indexed: 09/28/2023]
15
Williams A, Stephens TG, Shumaker A, Bhattacharya D. Peeling back the layers of coral holobiont multi-omics data. iScience 2023;26:107623. [PMID: 37694134 PMCID: PMC10482995 DOI: 10.1016/j.isci.2023.107623] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/20/2023] [Revised: 06/09/2023] [Accepted: 08/10/2023] [Indexed: 09/12/2023]  Open
16
Chan WY, Rudd D, van Oppen MJ. Spatial metabolomics for symbiotic marine invertebrates. Life Sci Alliance 2023;6:e202301900. [PMID: 37202120 PMCID: PMC10200813 DOI: 10.26508/lsa.202301900] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/04/2023] [Revised: 05/10/2023] [Accepted: 05/10/2023] [Indexed: 05/20/2023]  Open
17
Apprill A, Girdhar Y, Mooney TA, Hansel CM, Long MH, Liu Y, Zhang WG, Kapit J, Hughen K, Coogan J, Greene A. Toward a New Era of Coral Reef Monitoring. ENVIRONMENTAL SCIENCE & TECHNOLOGY 2023;57:5117-5124. [PMID: 36930700 PMCID: PMC10077584 DOI: 10.1021/acs.est.2c05369] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 08/02/2022] [Indexed: 06/18/2023]
18
Mohamed AR, Ochsenkühn MA, Kazlak AM, Moustafa A, Amin SA. The coral microbiome: towards an understanding of the molecular mechanisms of coral-microbiota interactions. FEMS Microbiol Rev 2023;47:fuad005. [PMID: 36882224 PMCID: PMC10045912 DOI: 10.1093/femsre/fuad005] [Citation(s) in RCA: 26] [Impact Index Per Article: 13.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/07/2022] [Revised: 02/10/2023] [Accepted: 02/15/2023] [Indexed: 03/09/2023]  Open
19
Tan LT. Impact of Marine Chemical Ecology Research on the Discovery and Development of New Pharmaceuticals. Mar Drugs 2023;21:174. [PMID: 36976223 PMCID: PMC10055925 DOI: 10.3390/md21030174] [Citation(s) in RCA: 10] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/02/2023] [Revised: 03/04/2023] [Accepted: 03/08/2023] [Indexed: 03/12/2023]  Open
20
Travesso M, Missionário M, Cruz S, Calado R, Madeira D. Combined effect of marine heatwaves and light intensity on the cellular stress response and photophysiology of the leather coral Sarcophyton cf. glaucum. THE SCIENCE OF THE TOTAL ENVIRONMENT 2023;861:160460. [PMID: 36435249 DOI: 10.1016/j.scitotenv.2022.160460] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/29/2022] [Revised: 10/19/2022] [Accepted: 11/20/2022] [Indexed: 06/16/2023]
21
Haydon TD, Matthews JL, Seymour JR, Raina JB, Seymour JE, Chartrand K, Camp EF, Suggett DJ. Metabolomic signatures of corals thriving across extreme reef habitats reveal strategies of heat stress tolerance. Proc Biol Sci 2023;290:20221877. [PMID: 36750192 PMCID: PMC9904954 DOI: 10.1098/rspb.2022.1877] [Citation(s) in RCA: 9] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/19/2022] [Accepted: 01/11/2023] [Indexed: 02/09/2023]  Open
22
Walker NS, Nestor V, Golbuu Y, Palumbi SR. Coral bleaching resistance variation is linked to differential mortality and skeletal growth during recovery. Evol Appl 2023;16:504-517. [PMID: 36793702 PMCID: PMC9923480 DOI: 10.1111/eva.13500] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/11/2022] [Revised: 09/19/2022] [Accepted: 10/12/2022] [Indexed: 11/09/2022]  Open
23
Bove CB, Ingersoll MV, Davies SW. Help Me, Symbionts, You're My Only Hope: Approaches to Accelerate our Understanding of Coral Holobiont Interactions. Integr Comp Biol 2022;62:1756-1769. [PMID: 36099871 DOI: 10.1093/icb/icac141] [Citation(s) in RCA: 11] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/15/2022] [Revised: 08/24/2022] [Accepted: 09/05/2022] [Indexed: 01/05/2023]  Open
24
Shaffer JP, Nothias LF, Thompson LR, Sanders JG, Salido RA, Couvillion SP, Brejnrod AD, Lejzerowicz F, Haiminen N, Huang S, Lutz HL, Zhu Q, Martino C, Morton JT, Karthikeyan S, Nothias-Esposito M, Dührkop K, Böcker S, Kim HW, Aksenov AA, Bittremieux W, Minich JJ, Marotz C, Bryant MM, Sanders K, Schwartz T, Humphrey G, Vásquez-Baeza Y, Tripathi A, Parida L, Carrieri AP, Beck KL, Das P, González A, McDonald D, Ladau J, Karst SM, Albertsen M, Ackermann G, DeReus J, Thomas T, Petras D, Shade A, Stegen J, Song SJ, Metz TO, Swafford AD, Dorrestein PC, Jansson JK, Gilbert JA, Knight R. Standardized multi-omics of Earth's microbiomes reveals microbial and metabolite diversity. Nat Microbiol 2022;7:2128-2150. [PMID: 36443458 PMCID: PMC9712116 DOI: 10.1038/s41564-022-01266-x] [Citation(s) in RCA: 68] [Impact Index Per Article: 22.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/03/2021] [Accepted: 10/10/2022] [Indexed: 11/30/2022]
25
Pei J, Chen S, Yu K, Hu J, Wang Y, Zhang J, Qin Z, Zhang R, Kuo TH, Chung HH, Hsu CC. Metabolomics Characterization of Scleractinia Corals with Different Life-History Strategies: A Case Study about Pocillopora meandrina and Seriatopora hystrix in the South China Sea. Metabolites 2022;12:metabo12111079. [PMID: 36355162 PMCID: PMC9693324 DOI: 10.3390/metabo12111079] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/01/2022] [Revised: 11/05/2022] [Accepted: 11/06/2022] [Indexed: 11/09/2022]  Open
26
Pei JY, Yu WF, Zhang JJ, Kuo TH, Chung HH, Hu JJ, Hsu CC, Yu KF. Mass spectrometry-based metabolomic signatures of coral bleaching under thermal stress. Anal Bioanal Chem 2022;414:7635-7646. [PMID: 36059041 DOI: 10.1007/s00216-022-04294-y] [Citation(s) in RCA: 12] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/04/2022] [Revised: 07/19/2022] [Accepted: 08/17/2022] [Indexed: 11/29/2022]
27
Adaptive Responses of the Sea Anemone Heteractis crispa to the Interaction of Acidification and Global Warming. Animals (Basel) 2022;12:ani12172259. [PMID: 36077978 PMCID: PMC9454579 DOI: 10.3390/ani12172259] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/09/2022] [Revised: 08/26/2022] [Accepted: 08/27/2022] [Indexed: 11/16/2022]  Open
28
Meng Z, Williams A, Liau P, Stephens TG, Drury C, Chiles EN, Su X, Javanmard M, Bhattacharya D. Development of a portable toolkit to diagnose coral thermal stress. Sci Rep 2022;12:14398. [PMID: 36002502 PMCID: PMC9402530 DOI: 10.1038/s41598-022-18653-3] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/25/2022] [Accepted: 08/17/2022] [Indexed: 11/21/2022]  Open
29
Cowen LJ, Putnam HM. Bioinformatics of Corals: Investigating Heterogeneous Omics Data from Coral Holobionts for Insight into Reef Health and Resilience. Annu Rev Biomed Data Sci 2022;5:205-231. [PMID: 35537462 DOI: 10.1146/annurev-biodatasci-122120-030732] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
30
Shoguchi E. Gene clusters for biosynthesis of mycosporine-like amino acids in dinoflagellate nuclear genomes: Possible recent horizontal gene transfer between species of Symbiodiniaceae (Dinophyceae). JOURNAL OF PHYCOLOGY 2022;58:1-11. [PMID: 34699617 PMCID: PMC9298759 DOI: 10.1111/jpy.13219] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/07/2021] [Revised: 10/01/2021] [Accepted: 10/12/2021] [Indexed: 05/12/2023]
31
Williams A, Pathmanathan JS, Stephens TG, Su X, Chiles EN, Conetta D, Putnam HM, Bhattacharya D. Multi-omic characterization of the thermal stress phenome in the stony coral Montipora capitata. PeerJ 2021;9:e12335. [PMID: 34824906 PMCID: PMC8590396 DOI: 10.7717/peerj.12335] [Citation(s) in RCA: 13] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/31/2021] [Accepted: 09/28/2021] [Indexed: 11/22/2022]  Open
32
Identification of Effector Metabolites Using Exometabolite Profiling of Diverse Microalgae. mSystems 2021;6:e0083521. [PMID: 34726483 PMCID: PMC8562479 DOI: 10.1128/msystems.00835-21] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/01/2022]  Open
33
Metabolomic signatures of coral bleaching history. Nat Ecol Evol 2021;5:495-503. [PMID: 33558733 DOI: 10.1038/s41559-020-01388-7] [Citation(s) in RCA: 47] [Impact Index Per Article: 11.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/18/2020] [Accepted: 12/18/2020] [Indexed: 12/13/2022]
34
Putnam HM. Avenues of reef-building coral acclimatization in response to rapid environmental change. J Exp Biol 2021;224:224/Suppl_1/jeb239319. [DOI: 10.1242/jeb.239319] [Citation(s) in RCA: 32] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]
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