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For: Morelli LG, Uriu K, Ares S, Oates AC. Computational approaches to developmental patterning. Science 2012;336:187-91. [PMID: 22499940 DOI: 10.1126/science.1215478] [Citation(s) in RCA: 68] [Impact Index Per Article: 5.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/10/2023]
Number Cited by Other Article(s)
1
Caliaro V, Peurichard D, Chara O. How a reaction-diffusion signal can control spinal cord regeneration in axolotls: A modeling study. iScience 2024;27:110197. [PMID: 39021793 PMCID: PMC11253152 DOI: 10.1016/j.isci.2024.110197] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/14/2023] [Revised: 02/07/2024] [Accepted: 06/03/2024] [Indexed: 07/20/2024]  Open
2
Zhang L, Xue G, Zhou X, Huang J, Li Z. A mathematical framework for understanding the spontaneous emergence of complexity applicable to growing multicellular systems. PLoS Comput Biol 2024;20:e1011882. [PMID: 38838038 PMCID: PMC11182560 DOI: 10.1371/journal.pcbi.1011882] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/02/2024] [Revised: 06/17/2024] [Accepted: 05/20/2024] [Indexed: 06/07/2024]  Open
3
Iwasa Y. Mathematical modeling for developmental processes. Dev Growth Differ 2023;65:272-281. [PMID: 37190873 PMCID: PMC11520983 DOI: 10.1111/dgd.12856] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/21/2023] [Revised: 04/27/2023] [Accepted: 05/07/2023] [Indexed: 05/17/2023]
4
Fields C, Levin M. Regulative development as a model for origin of life and artificial life studies. Biosystems 2023;229:104927. [PMID: 37211257 DOI: 10.1016/j.biosystems.2023.104927] [Citation(s) in RCA: 12] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/10/2022] [Revised: 05/03/2023] [Accepted: 05/08/2023] [Indexed: 05/23/2023]
5
Roth G, Misailidis G, Pappa M, Ferralli J, Tsiairis CD. Unidirectional and phase-gated signaling synchronizes murine presomitic mesoderm cells. Dev Cell 2023:S1534-5807(23)00155-7. [PMID: 37098349 DOI: 10.1016/j.devcel.2023.04.002] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/17/2022] [Revised: 01/06/2023] [Accepted: 04/01/2023] [Indexed: 04/27/2023]
6
Miroshnikova YA, Shahbazi MN, Negrete J, Chalut KJ, Smith A. Cell state transitions: catch them if you can. Development 2023;150:dev201139. [PMID: 36930528 PMCID: PMC10655867 DOI: 10.1242/dev.201139] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/18/2023]
7
Uriu K, Morelli LG. Orchestration of tissue shape changes and gene expression patterns in development. Semin Cell Dev Biol 2023;147:24-33. [PMID: 36631335 DOI: 10.1016/j.semcdb.2022.12.009] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/28/2022] [Revised: 12/27/2022] [Accepted: 12/27/2022] [Indexed: 01/11/2023]
8
Manicka S, Levin M. Minimal Developmental Computation: A Causal Network Approach to Understand Morphogenetic Pattern Formation. ENTROPY (BASEL, SWITZERLAND) 2022;24:107. [PMID: 35052133 PMCID: PMC8774453 DOI: 10.3390/e24010107] [Citation(s) in RCA: 10] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 09/07/2021] [Revised: 01/05/2022] [Accepted: 01/07/2022] [Indexed: 12/22/2022]
9
Ceccarelli AS, Borges A, Chara O. Size matters: tissue size as a marker for a transition between reaction-diffusion regimes in spatio-temporal distribution of morphogens. ROYAL SOCIETY OPEN SCIENCE 2022;9:211112. [PMID: 35116146 PMCID: PMC8790355 DOI: 10.1098/rsos.211112] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 06/30/2021] [Accepted: 12/22/2021] [Indexed: 06/14/2023]
10
Veerman F, Mercker M, Marciniak-Czochra A. Beyond Turing: far-from-equilibrium patterns and mechano-chemical feedback. PHILOSOPHICAL TRANSACTIONS. SERIES A, MATHEMATICAL, PHYSICAL, AND ENGINEERING SCIENCES 2021;379:20200278. [PMID: 34743599 DOI: 10.1098/rsta.2020.0278] [Citation(s) in RCA: 13] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/03/2023]
11
Taga G. Global entrainment in the brain-body-environment: retrospective and prospective views. BIOLOGICAL CYBERNETICS 2021;115:431-438. [PMID: 34633537 DOI: 10.1007/s00422-021-00898-2] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/15/2021] [Accepted: 09/25/2021] [Indexed: 05/21/2023]
12
Mechano-chemical feedback mediated competition for BMP signalling leads to pattern formation. Dev Biol 2021;481:43-51. [PMID: 34555363 DOI: 10.1016/j.ydbio.2021.09.006] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/22/2021] [Revised: 09/01/2021] [Accepted: 09/15/2021] [Indexed: 11/22/2022]
13
Verma A, Jena SG, Isakov DR, Aoki K, Toettcher JE, Engelhardt BE. A self-exciting point process to study multicellular spatial signaling patterns. Proc Natl Acad Sci U S A 2021;118:e2026123118. [PMID: 34362843 PMCID: PMC8364135 DOI: 10.1073/pnas.2026123118] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/09/2023]  Open
14
Cura Costa E, Otsuki L, Rodrigo Albors A, Tanaka EM, Chara O. Spatiotemporal control of cell cycle acceleration during axolotl spinal cord regeneration. eLife 2021;10:e55665. [PMID: 33988504 PMCID: PMC8205487 DOI: 10.7554/elife.55665] [Citation(s) in RCA: 17] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/10/2020] [Accepted: 05/13/2021] [Indexed: 01/05/2023]  Open
15
Sun D, Lu L, Liu F, Duan L, Wang D, Xiong J. Analysis of an improved fractional-order model of boundary formation in the Drosophila large intestine dependent on Delta-Notch pathway. ADVANCES IN DIFFERENCE EQUATIONS 2020;2020:377. [PMID: 32834816 PMCID: PMC7376541 DOI: 10.1186/s13662-020-02836-1] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 01/15/2020] [Accepted: 07/13/2020] [Indexed: 06/11/2023]
16
Lei J. A general mathematical framework for understanding the behavior of heterogeneous stem cell regeneration. J Theor Biol 2020;492:110196. [PMID: 32067937 DOI: 10.1016/j.jtbi.2020.110196] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/23/2019] [Revised: 12/28/2019] [Accepted: 02/11/2020] [Indexed: 11/21/2022]
17
Perkins ML, Benzinger D, Arcak M, Khammash M. Cell-in-the-loop pattern formation with optogenetically emulated cell-to-cell signaling. Nat Commun 2020;11:1355. [PMID: 32170129 PMCID: PMC7069979 DOI: 10.1038/s41467-020-15166-3] [Citation(s) in RCA: 26] [Impact Index Per Article: 5.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/19/2019] [Accepted: 02/11/2020] [Indexed: 12/22/2022]  Open
18
Stochastic pulsing of gene expression enables the generation of spatial patterns in Bacillus subtilis biofilms. Nat Commun 2020;11:950. [PMID: 32075967 PMCID: PMC7031267 DOI: 10.1038/s41467-020-14431-9] [Citation(s) in RCA: 21] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/10/2018] [Accepted: 12/17/2019] [Indexed: 12/27/2022]  Open
19
Silva-Dias L, Lopez-Castillo A. Turing patterns modulation by chemical gradient in isothermal and non-isothermal conditions. Phys Chem Chem Phys 2020;22:7507-7515. [DOI: 10.1039/d0cp00650e] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
20
Cervera J, Pai VP, Levin M, Mafe S. From non-excitable single-cell to multicellular bioelectrical states supported by ion channels and gap junction proteins: Electrical potentials as distributed controllers. PROGRESS IN BIOPHYSICS AND MOLECULAR BIOLOGY 2019;149:39-53. [PMID: 31255702 DOI: 10.1016/j.pbiomolbio.2019.06.004] [Citation(s) in RCA: 26] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/24/2019] [Accepted: 06/26/2019] [Indexed: 12/18/2022]
21
Tissue Patterning: The Winner Takes It All, the Losers Standing Small. Curr Biol 2019;29:R334-R337. [DOI: 10.1016/j.cub.2019.03.026] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
22
Cervera J, Manzanares JA, Mafe S, Levin M. Synchronization of Bioelectric Oscillations in Networks of Nonexcitable Cells: From Single-Cell to Multicellular States. J Phys Chem B 2019;123:3924-3934. [PMID: 31003574 DOI: 10.1021/acs.jpcb.9b01717] [Citation(s) in RCA: 20] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
23
Xavier da Silveira Dos Santos A, Liberali P. From single cells to tissue self-organization. FEBS J 2018;286:1495-1513. [PMID: 30390414 PMCID: PMC6519261 DOI: 10.1111/febs.14694] [Citation(s) in RCA: 45] [Impact Index Per Article: 6.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/27/2018] [Revised: 10/10/2018] [Accepted: 11/02/2018] [Indexed: 12/16/2022]
24
Boas SEM, Carvalho J, van den Broek M, Weijers EM, Goumans MJ, Koolwijk P, Merks RMH. A local uPAR-plasmin-TGFβ1 positive feedback loop in a qualitative computational model of angiogenic sprouting explains the in vitro effect of fibrinogen variants. PLoS Comput Biol 2018;14:e1006239. [PMID: 29979675 PMCID: PMC6072121 DOI: 10.1371/journal.pcbi.1006239] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/15/2017] [Revised: 08/02/2018] [Accepted: 05/28/2018] [Indexed: 11/19/2022]  Open
25
Sloin HE, Ruggiero G, Rubinstein A, Smadja Storz S, Foulkes NS, Gothilf Y. Interactions between the circadian clock and TGF-β signaling pathway in zebrafish. PLoS One 2018;13:e0199777. [PMID: 29940038 PMCID: PMC6016920 DOI: 10.1371/journal.pone.0199777] [Citation(s) in RCA: 18] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/19/2017] [Accepted: 06/13/2018] [Indexed: 12/22/2022]  Open
26
Integrating planar polarity and tissue mechanics in computational models of epithelial morphogenesis. ACTA ACUST UNITED AC 2017. [DOI: 10.1016/j.coisb.2017.07.009] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022]
27
Liu F, Sun D, Murakami R, Matsuno H. Modeling and analysis of the Delta-Notch dependent boundary formation in the Drosophila large intestine. BMC SYSTEMS BIOLOGY 2017;11:80. [PMID: 28950873 PMCID: PMC5615251 DOI: 10.1186/s12918-017-0455-8] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
28
Bellaïche Y. Cell Division in the Light of Modeling. Dev Cell 2017;38:584-6. [PMID: 27676430 DOI: 10.1016/j.devcel.2016.09.008] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/13/2023]
29
Data-driven modeling reveals cell behaviors controlling self-organization during Myxococcus xanthus development. Proc Natl Acad Sci U S A 2017;114:E4592-E4601. [PMID: 28533367 DOI: 10.1073/pnas.1620981114] [Citation(s) in RCA: 21] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/19/2023]  Open
30
Dong P, Liu Z. Shaping development by stochasticity and dynamics in gene regulation. Open Biol 2017;7:170030. [PMID: 28469006 PMCID: PMC5451542 DOI: 10.1098/rsob.170030] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/07/2017] [Accepted: 04/05/2017] [Indexed: 12/12/2022]  Open
31
Leung MCK, Procter AC, Goldstone JV, Foox J, DeSalle R, Mattingly CJ, Siddall ME, Timme-Laragy AR. Applying evolutionary genetics to developmental toxicology and risk assessment. Reprod Toxicol 2017;69:174-186. [PMID: 28267574 PMCID: PMC5829367 DOI: 10.1016/j.reprotox.2017.03.003] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/05/2016] [Revised: 02/27/2017] [Accepted: 03/02/2017] [Indexed: 12/26/2022]
32
From morphogen to morphogenesis and back. Nature 2017;541:311-320. [DOI: 10.1038/nature21348] [Citation(s) in RCA: 206] [Impact Index Per Article: 25.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/29/2016] [Accepted: 11/18/2016] [Indexed: 12/11/2022]
33
Frigola D, Caño-Delgado AI, Ibañes M. Methods for Modeling Brassinosteroid-Mediated Signaling in Plant Development. Methods Mol Biol 2017;1564:103-120. [PMID: 28124249 DOI: 10.1007/978-1-4939-6813-8_9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/06/2023]
34
The interplay between genetic and bioelectrical signaling permits a spatial regionalisation of membrane potentials in model multicellular ensembles. Sci Rep 2016;6:35201. [PMID: 27731412 PMCID: PMC5059667 DOI: 10.1038/srep35201] [Citation(s) in RCA: 40] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/26/2016] [Accepted: 09/26/2016] [Indexed: 12/12/2022]  Open
35
Loganathan R, Rongish BJ, Smith CM, Filla MB, Czirok A, Bénazéraf B, Little CD. Extracellular matrix motion and early morphogenesis. Development 2016;143:2056-65. [PMID: 27302396 PMCID: PMC4920166 DOI: 10.1242/dev.127886] [Citation(s) in RCA: 45] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
36
Epithelial tricellular junctions act as interphase cell shape sensors to orient mitosis. Nature 2016;530:495-8. [PMID: 26886796 PMCID: PMC5450930 DOI: 10.1038/nature16970] [Citation(s) in RCA: 163] [Impact Index Per Article: 18.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/11/2015] [Accepted: 01/05/2016] [Indexed: 12/24/2022]
37
Fusco G. For a new dialogue between theoretical and empirical studies in evo-devo. Front Ecol Evol 2015. [DOI: 10.3389/fevo.2015.00097] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022]  Open
38
Torres-Sánchez A, Gómez-Gardeñes J, Falo F. An integrative approach for modeling and simulation of heterocyst pattern formation in cyanobacteria filaments. PLoS Comput Biol 2015;11:e1004129. [PMID: 25816286 PMCID: PMC4376521 DOI: 10.1371/journal.pcbi.1004129] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/21/2014] [Accepted: 01/14/2015] [Indexed: 11/18/2022]  Open
39
Pfeuty B. A computational model for the coordination of neural progenitor self-renewal and differentiation through Hes1 dynamics. Development 2015;142:477-85. [DOI: 10.1242/dev.112649] [Citation(s) in RCA: 26] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022]
40
Coffman VC, Wu JQ. Every laboratory with a fluorescence microscope should consider counting molecules. Mol Biol Cell 2015;25:1545-8. [PMID: 24825827 PMCID: PMC4019486 DOI: 10.1091/mbc.e13-05-0249] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/09/2023]  Open
41
Evolutionary Developmental Biology and the Limits of Philosophical Accounts of Mechanistic Explanation. HISTORY, PHILOSOPHY AND THEORY OF THE LIFE SCIENCES 2015. [DOI: 10.1007/978-94-017-9822-8_7] [Citation(s) in RCA: 22] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/22/2022]
42
Bentley K, Philippides A, Ravasz Regan E. Do endothelial cells dream of eclectic shape? Dev Cell 2014;29:146-58. [PMID: 24780735 DOI: 10.1016/j.devcel.2014.03.019] [Citation(s) in RCA: 23] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
43
Uriu K, Morelli LG, Oates AC. Interplay between intercellular signaling and cell movement in development. Semin Cell Dev Biol 2014;35:66-72. [PMID: 24882723 DOI: 10.1016/j.semcdb.2014.05.011] [Citation(s) in RCA: 27] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/12/2013] [Revised: 05/15/2014] [Accepted: 05/20/2014] [Indexed: 01/30/2023]
44
Bajard L, Morelli LG, Ares S, Pécréaux J, Jülicher F, Oates AC. Wnt-regulated dynamics of positional information in zebrafish somitogenesis. Development 2014;141:1381-91. [PMID: 24595291 PMCID: PMC3943186 DOI: 10.1242/dev.093435] [Citation(s) in RCA: 49] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022]
45
Bozorgmehr JEH. The role of self-organization in developmental evolution. Theory Biosci 2014;133:145-63. [PMID: 24737046 DOI: 10.1007/s12064-014-0200-4] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/20/2013] [Accepted: 03/06/2014] [Indexed: 01/09/2023]
46
Benedetto A, Accetta G, Fujita Y, Charras G. Spatiotemporal control of gene expression using microfluidics. LAB ON A CHIP 2014;14:1336-1347. [PMID: 24531367 DOI: 10.1039/c3lc51281a] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/03/2023]
47
Tompkins N, Li N, Girabawe C, Heymann M, Ermentrout GB, Epstein IR, Fraden S. Testing Turing's theory of morphogenesis in chemical cells. Proc Natl Acad Sci U S A 2014;111:4397-402. [PMID: 24616508 PMCID: PMC3970514 DOI: 10.1073/pnas.1322005111] [Citation(s) in RCA: 118] [Impact Index Per Article: 10.7] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]  Open
48
Meyer HM, Roeder AHK. Stochasticity in plant cellular growth and patterning. FRONTIERS IN PLANT SCIENCE 2014;5:420. [PMID: 25250034 PMCID: PMC4157614 DOI: 10.3389/fpls.2014.00420] [Citation(s) in RCA: 24] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/30/2014] [Accepted: 08/06/2014] [Indexed: 05/05/2023]
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Deng P, de Vargas Roditi L, van Ditmarsch D, Xavier JB. The ecological basis of morphogenesis: branching patterns in swarming colonies of bacteria. NEW JOURNAL OF PHYSICS 2014;16:015006-15006. [PMID: 24587694 PMCID: PMC3935381 DOI: 10.1088/1367-2630/16/1/015006] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/26/2023]
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Brigandt I. Systems biology and the integration of mechanistic explanation and mathematical explanation. STUDIES IN HISTORY AND PHILOSOPHY OF BIOLOGICAL AND BIOMEDICAL SCIENCES 2013;44:477-492. [PMID: 23863399 DOI: 10.1016/j.shpsc.2013.06.002] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/21/2012] [Revised: 06/12/2013] [Accepted: 06/14/2013] [Indexed: 06/02/2023]
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