• Reference Citation Analysis
  • v
  • v
  • Find an Article
Find an Article PDF (5067629)   Today's Articles (22)
For: Wiser MJ, Ribeck N, Lenski RE. Long-term dynamics of adaptation in asexual populations. Science 2013;342:1364-7. [PMID: 24231808 DOI: 10.1126/science.1243357] [Citation(s) in RCA: 331] [Impact Index Per Article: 27.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/03/2023]
Number Cited by Other Article(s)
1
Molinet J, Stelkens R. The evolution of thermal performance curves in response to rising temperatures across the model genus yeast. Proc Natl Acad Sci U S A 2025;122:e2423262122. [PMID: 40392856 DOI: 10.1073/pnas.2423262122] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/11/2024] [Accepted: 04/21/2025] [Indexed: 05/22/2025]  Open
2
Liu Q, Wang Z, Cui J, Li J, Jiang C, Tan G, Qi H. Bacterial Cells Engineered with Synthetic Genetic Materials for Blind Testing of Random Mutagenesis. ACS Synth Biol 2025. [PMID: 40354669 DOI: 10.1021/acssynbio.5c00054] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/14/2025]
3
Schiraldi A. Short- and Long-Term Evolution of Microbial Cultures: A Thermodynamic Perspective. Int J Mol Sci 2025;26:4187. [PMID: 40362424 PMCID: PMC12071856 DOI: 10.3390/ijms26094187] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/23/2025] [Revised: 04/21/2025] [Accepted: 04/25/2025] [Indexed: 05/15/2025]  Open
4
Chihoub D, Pintard C, Lenski RE, Tenaillon O, Couce A. The evolution of robustness and fragility during long-term bacterial adaptation. Proc Natl Acad Sci U S A 2025;122:e2501901122. [PMID: 40232797 PMCID: PMC12037012 DOI: 10.1073/pnas.2501901122] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/28/2025] [Accepted: 03/17/2025] [Indexed: 04/16/2025]  Open
5
Martyushev LM. The Significance of the Entropic Measure of Time in Natural Sciences. ENTROPY (BASEL, SWITZERLAND) 2025;27:425. [PMID: 40282659 PMCID: PMC12025688 DOI: 10.3390/e27040425] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/20/2025] [Revised: 04/07/2025] [Accepted: 04/11/2025] [Indexed: 04/29/2025]
6
Srienc F, Barrett J. Predicting the Rate Structure of an Evolved Metabolic Network. Metabolites 2025;15:200. [PMID: 40137164 PMCID: PMC11944149 DOI: 10.3390/metabo15030200] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/10/2025] [Revised: 02/24/2025] [Accepted: 03/07/2025] [Indexed: 03/27/2025]  Open
7
Shibai A, Izutsu M, Kotani H, Furusawa C. Quantitative analysis of relationship between mutation rate and speed of adaptation under antibiotic exposure in Escherichia coli. PLoS Genet 2025;21:e1011627. [PMID: 40153704 PMCID: PMC11975134 DOI: 10.1371/journal.pgen.1011627] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/18/2024] [Revised: 04/07/2025] [Accepted: 02/17/2025] [Indexed: 03/30/2025]  Open
8
Stroud JT, Ratcliff WC. Long-term studies provide unique insights into evolution. Nature 2025;639:589-601. [PMID: 40108318 DOI: 10.1038/s41586-025-08597-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/09/2024] [Accepted: 01/06/2025] [Indexed: 03/22/2025]
9
Isaksson H, Lind P, Libby E. Adaptive evolutionary trajectories in complexity: Transitions between unicellularity and facultative differentiated multicellularity. Proc Natl Acad Sci U S A 2025;122:e2411692122. [PMID: 39841150 PMCID: PMC11789074 DOI: 10.1073/pnas.2411692122] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/12/2024] [Accepted: 12/12/2024] [Indexed: 01/23/2025]  Open
10
Sumanarathne AS, Gerstein AC. Quantifying Competitive Fitness in Yeast with High-Throughput Fluorescence Microscopy Imaging. Curr Protoc 2025;5:e70093. [PMID: 39869052 PMCID: PMC11771579 DOI: 10.1002/cpz1.70093] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/28/2025]
11
Lemée P, Charron R, Bridier A. Genomic Pipeline for Analysis of Mutational Events in Bacteria. Methods Mol Biol 2025;2852:211-222. [PMID: 39235747 DOI: 10.1007/978-1-0716-4100-2_15] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 09/06/2024]
12
Banse P, Luiselli J, Parsons DP, Grohens T, Foley M, Trujillo L, Rouzaud‐Cornabas J, Knibbe C, Beslon G. Forward-in-time simulation of chromosomal rearrangements: The invisible backbone that sustains long-term adaptation. Mol Ecol 2024;33:e17234. [PMID: 38078552 PMCID: PMC11628651 DOI: 10.1111/mec.17234] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/13/2023] [Revised: 11/20/2023] [Accepted: 11/24/2023] [Indexed: 12/11/2024]
13
Kinsler G, Li Y, Sherlock G, Petrov DA. A high-resolution two-step evolution experiment in yeast reveals a shift from pleiotropic to modular adaptation. PLoS Biol 2024;22:e3002848. [PMID: 39636818 PMCID: PMC11620474 DOI: 10.1371/journal.pbio.3002848] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/19/2024] [Accepted: 09/17/2024] [Indexed: 12/07/2024]  Open
14
Ingelman H, Heffernan JK, Harris A, Brown SD, Shaikh KM, Saqib AY, Pinheiro MJ, de Lima LA, Martinez KR, Gonzalez-Garcia RA, Hawkins G, Daleiden J, Tran L, Zeleznik H, Jensen RO, Reynoso V, Schindel H, Jänes J, Simpson SD, Köpke M, Marcellin E, Valgepea K. Autotrophic adaptive laboratory evolution of the acetogen Clostridium autoethanogenum delivers the gas-fermenting strain LAbrini with superior growth, products, and robustness. N Biotechnol 2024;83:1-15. [PMID: 38871051 DOI: 10.1016/j.nbt.2024.06.002] [Citation(s) in RCA: 8] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/12/2024] [Revised: 06/05/2024] [Accepted: 06/10/2024] [Indexed: 06/15/2024]
15
Ferrare JT, Good BH. Evolution of evolvability in rapidly adapting populations. Nat Ecol Evol 2024;8:2085-2096. [PMID: 39261599 PMCID: PMC12049861 DOI: 10.1038/s41559-024-02527-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/15/2023] [Accepted: 07/29/2024] [Indexed: 09/13/2024]
16
Natalino M, Fumasoni M. Compensatory Evolution to DNA Replication Stress is Robust to Nutrient Availability. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2024:2024.10.29.620637. [PMID: 39553989 PMCID: PMC11565888 DOI: 10.1101/2024.10.29.620637] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/19/2024]
17
Gusev AO, Martyushev LM. The Relationship Between Astronomical and Developmental Times Emerging in Modeling the Evolution of Agents. ENTROPY (BASEL, SWITZERLAND) 2024;26:887. [PMID: 39451963 PMCID: PMC11506980 DOI: 10.3390/e26100887] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/01/2024] [Revised: 10/17/2024] [Accepted: 10/20/2024] [Indexed: 10/26/2024]
18
Ardell S, Martsul A, Johnson MS, Kryazhimskiy S. Environment-independent distribution of mutational effects emerges from microscopic epistasis. Science 2024;386:87-92. [PMID: 39361740 PMCID: PMC11580693 DOI: 10.1126/science.adn0753] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/21/2023] [Accepted: 08/22/2024] [Indexed: 10/05/2024]
19
Banse P, Elena SF, Beslon G. Innovation in viruses: fitness valley crossing, neutral landscapes, or just duplications? Virus Evol 2024;10:veae078. [PMID: 39386076 PMCID: PMC11463231 DOI: 10.1093/ve/veae078] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/13/2023] [Revised: 07/19/2024] [Accepted: 09/18/2024] [Indexed: 10/12/2024]  Open
20
Izutsu M, Lake DM, Matson ZWD, Dodson JP, Lenski RE. Effects of periodic bottlenecks on the dynamics of adaptive evolution in microbial populations. MICROBIOLOGY (READING, ENGLAND) 2024;170:001494. [PMID: 39292609 PMCID: PMC11410044 DOI: 10.1099/mic.0.001494] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/06/2024] [Accepted: 08/14/2024] [Indexed: 09/20/2024]
21
Ardell S, Martsul A, Johnson MS, Kryazhimskiy S. Environment-independent distribution of mutational effects emerges from microscopic epistasis. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2024:2023.11.18.567655. [PMID: 38014325 PMCID: PMC10680819 DOI: 10.1101/2023.11.18.567655] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/29/2023]
22
Chen P, Zhang J. The loci of environmental adaptation in a model eukaryote. Nat Commun 2024;15:5672. [PMID: 38971805 PMCID: PMC11227561 DOI: 10.1038/s41467-024-50002-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/19/2023] [Accepted: 06/25/2024] [Indexed: 07/08/2024]  Open
23
Tarkington J, Zufall RA. Correlated responses to selection across diverse environments during experimental evolution of Tetrahymena thermophila. Ecol Evol 2024;14:e11395. [PMID: 39045496 PMCID: PMC11264346 DOI: 10.1002/ece3.11395] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/07/2023] [Revised: 04/19/2024] [Accepted: 04/26/2024] [Indexed: 07/25/2024]  Open
24
Bramwell G, DeGregori J, Thomas F, Ujvari B. Transmissible cancers, the genomes that do not melt down. Evolution 2024;78:1205-1211. [PMID: 38656785 DOI: 10.1093/evolut/qpae063] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/05/2023] [Revised: 04/08/2024] [Accepted: 04/19/2024] [Indexed: 04/26/2024]
25
Zion S, Katz S, Hershberg R. Escherichia coli adaptation under prolonged resource exhaustion is characterized by extreme parallelism and frequent historical contingency. PLoS Genet 2024;20:e1011333. [PMID: 38885285 PMCID: PMC11213340 DOI: 10.1371/journal.pgen.1011333] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/10/2024] [Revised: 06/28/2024] [Accepted: 06/05/2024] [Indexed: 06/20/2024]  Open
26
Root-Bernstein RS, Bernstein MI. 'Evolutionary poker': an agent-based model of interactome emergence and epistasis tested against Lenski's long-term E. coli experiments. J Physiol 2024;602:2511-2535. [PMID: 37707489 DOI: 10.1113/jp284421] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/29/2023] [Accepted: 08/23/2023] [Indexed: 09/15/2023]  Open
27
Baverstock K. Responses to commentaries on "The gene: An appraisal". PROGRESS IN BIOPHYSICS AND MOLECULAR BIOLOGY 2024;188:31-42. [PMID: 38360273 DOI: 10.1016/j.pbiomolbio.2024.02.002] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/23/2023] [Accepted: 02/02/2024] [Indexed: 02/17/2024]
28
Orsi E, Schada von Borzyskowski L, Noack S, Nikel PI, Lindner SN. Automated in vivo enzyme engineering accelerates biocatalyst optimization. Nat Commun 2024;15:3447. [PMID: 38658554 PMCID: PMC11043082 DOI: 10.1038/s41467-024-46574-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/21/2023] [Accepted: 03/04/2024] [Indexed: 04/26/2024]  Open
29
Venkataraman P, Nagendra P, Ahlawat N, Brajesh RG, Saini S. Convergent genetic adaptation of Escherichia coli in minimal media leads to pleiotropic divergence. Front Mol Biosci 2024;11:1286824. [PMID: 38660375 PMCID: PMC11039892 DOI: 10.3389/fmolb.2024.1286824] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/31/2023] [Accepted: 02/15/2024] [Indexed: 04/26/2024]  Open
30
Li Y, Barton JP. Correlated Allele Frequency Changes Reveal Clonal Structure and Selection in Temporal Genetic Data. Mol Biol Evol 2024;41:msae060. [PMID: 38507665 PMCID: PMC10986812 DOI: 10.1093/molbev/msae060] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/13/2023] [Revised: 02/02/2024] [Accepted: 03/15/2024] [Indexed: 03/22/2024]  Open
31
Boffi NM, Guo Y, Rycroft CH, Amir A. How microscopic epistasis and clonal interference shape the fitness trajectory in a spin glass model of microbial long-term evolution. eLife 2024;12:RP87895. [PMID: 38376390 PMCID: PMC10942580 DOI: 10.7554/elife.87895] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/21/2024]  Open
32
Poret AJ, Schaefers M, Merakou C, Mansour KE, Lagoudas GK, Cross AR, Goldberg JB, Kishony R, Uluer AZ, McAdam AJ, Blainey PC, Vargas SO, Lieberman TD, Priebe GP. De novo mutations mediate phenotypic switching in an opportunistic human lung pathogen. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2024:2024.02.06.579193. [PMID: 38370793 PMCID: PMC10871308 DOI: 10.1101/2024.02.06.579193] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/20/2024]
33
Couce A, Limdi A, Magnan M, Owen SV, Herren CM, Lenski RE, Tenaillon O, Baym M. Changing fitness effects of mutations through long-term bacterial evolution. Science 2024;383:eadd1417. [PMID: 38271521 DOI: 10.1126/science.add1417] [Citation(s) in RCA: 4] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/25/2022] [Accepted: 12/12/2023] [Indexed: 01/27/2024]
34
Melissa MJ, Desai MM. A dynamical limit to evolutionary adaptation. Proc Natl Acad Sci U S A 2024;121:e2312845121. [PMID: 38241432 PMCID: PMC10823227 DOI: 10.1073/pnas.2312845121] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/31/2023] [Accepted: 12/06/2023] [Indexed: 01/21/2024]  Open
35
Baverstock K. The Gene: An appraisal. PROGRESS IN BIOPHYSICS AND MOLECULAR BIOLOGY 2024;186:e73-e88. [PMID: 38044248 DOI: 10.1016/j.pbiomolbio.2023.11.001] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/05/2023]
36
Dapa T, Xavier KB. Effect of diet on the evolution of gut commensal bacteria. Gut Microbes 2024;16:2369337. [PMID: 38904092 PMCID: PMC11195494 DOI: 10.1080/19490976.2024.2369337] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 12/07/2023] [Accepted: 06/12/2024] [Indexed: 06/22/2024]  Open
37
Diaz-Colunga J, Sanchez A, Ogbunugafor CB. Environmental modulation of global epistasis in a drug resistance fitness landscape. Nat Commun 2023;14:8055. [PMID: 38052815 PMCID: PMC10698197 DOI: 10.1038/s41467-023-43806-x] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/22/2022] [Accepted: 11/21/2023] [Indexed: 12/07/2023]  Open
38
Favate JS, Skalenko KS, Chiles E, Su X, Yadavalli SS, Shah P. Linking genotypic and phenotypic changes in the E. coli long-term evolution experiment using metabolomics. eLife 2023;12:RP87039. [PMID: 37991493 PMCID: PMC10665018 DOI: 10.7554/elife.87039] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2023]  Open
39
Westerhoff HV. On paradoxes between optimal growth, metabolic control analysis, and flux balance analysis. Biosystems 2023;233:104998. [PMID: 37591451 DOI: 10.1016/j.biosystems.2023.104998] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/01/2023] [Revised: 08/04/2023] [Accepted: 08/08/2023] [Indexed: 08/19/2023]
40
Zhao R, Lukacsovich T, Gaut R, Emerson JJ. FREQ-Seq2: a method for precise high-throughput combinatorial quantification of allele frequencies. G3 (BETHESDA, MD.) 2023;13:jkad162. [PMID: 37494033 PMCID: PMC10542570 DOI: 10.1093/g3journal/jkad162] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/26/2023] [Revised: 01/26/2023] [Accepted: 07/14/2023] [Indexed: 07/27/2023]
41
Melissa MJ, Desai MM. A dynamical limit to evolutionary adaptation. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2023:2023.07.31.551320. [PMID: 37577473 PMCID: PMC10418092 DOI: 10.1101/2023.07.31.551320] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 08/15/2023]
42
Turner CB, Blount ZD, Mitchell DH, Lenski RE. Evolution of a cross-feeding interaction following a key innovation in a long-term evolution experiment with Escherichia coli. MICROBIOLOGY (READING, ENGLAND) 2023;169:001390. [PMID: 37650867 PMCID: PMC10482366 DOI: 10.1099/mic.0.001390] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/31/2023] [Accepted: 08/15/2023] [Indexed: 09/01/2023]
43
Wagner A. Evolvability-enhancing mutations in the fitness landscapes of an RNA and a protein. Nat Commun 2023;14:3624. [PMID: 37336901 PMCID: PMC10279741 DOI: 10.1038/s41467-023-39321-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/26/2022] [Accepted: 06/05/2023] [Indexed: 06/21/2023]  Open
44
Lenski RE. Revisiting the Design of the Long-Term Evolution Experiment with Escherichia coli. J Mol Evol 2023;91:241-253. [PMID: 36790511 DOI: 10.1007/s00239-023-10095-3] [Citation(s) in RCA: 18] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/02/2022] [Accepted: 01/20/2023] [Indexed: 02/16/2023]
45
Martínez AA, Lang GI. Identifying Targets of Selection in Laboratory Evolution Experiments. J Mol Evol 2023;91:345-355. [PMID: 36810618 PMCID: PMC11197053 DOI: 10.1007/s00239-023-10096-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/07/2022] [Accepted: 02/01/2023] [Indexed: 02/24/2023]
46
Johnson MS, Reddy G, Desai MM. Epistasis and evolution: recent advances and an outlook for prediction. BMC Biol 2023;21:120. [PMID: 37226182 PMCID: PMC10206586 DOI: 10.1186/s12915-023-01585-3] [Citation(s) in RCA: 41] [Impact Index Per Article: 20.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/06/2023] [Accepted: 03/30/2023] [Indexed: 05/26/2023]  Open
47
Venkataram S, Kryazhimskiy S. Evolutionary repeatability of emergent properties of ecological communities. Philos Trans R Soc Lond B Biol Sci 2023;378:20220047. [PMID: 37004728 PMCID: PMC10067272 DOI: 10.1098/rstb.2022.0047] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/12/2022] [Accepted: 12/07/2022] [Indexed: 04/04/2023]  Open
48
Favate JS, Skalenko KS, Chiles E, Su X, Yadavalli SS, Shah P. Linking genotypic and phenotypic changes in the E. coli Long-Term Evolution Experiment using metabolomics. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2023:2023.02.15.528756. [PMID: 36874203 PMCID: PMC9985142 DOI: 10.1101/2023.02.15.528756] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/10/2023]
49
Wortel MT. Evolutionary coexistence in a fluctuating environment by specialization on resource level. J Evol Biol 2023;36:622-631. [PMID: 36799532 DOI: 10.1111/jeb.14158] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/28/2022] [Revised: 01/02/2023] [Accepted: 01/18/2023] [Indexed: 02/18/2023]
50
Adaptation to Overflow Metabolism by Mutations That Impair tRNA Modification in Experimentally Evolved Bacteria. mBio 2023;14:e0028723. [PMID: 36853041 PMCID: PMC10128029 DOI: 10.1128/mbio.00287-23] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/01/2023]  Open
PrevPage 1 of 7 1234567Next
© 2004-2025 Baishideng Publishing Group Inc. All rights reserved. 7041 Koll Center Parkway, Suite 160, Pleasanton, CA 94566, USA