Dynamics changes of coastal aquaculture ponds based on the Google Earth Engine in Jiangsu Province, China

Monitoring the spatiotemporal variation in coastal aquaculture zones is essential to providing a scientific basis for formulating scientifically reasonable land management policies. This study uses the Google Earth Engine (GEE) remote sensing cloud platform to extract aquaculture information based on Landsat series and Sentinel-2 images for the six years of 1984 to 2021 (1984, 1990, 2000, 2010, 2016 and 2021), so as to analyze the changes in the coastal aquaculture pond area, along with its spatiotemporal characteristics, of Jiangsu Province. The overall area of coastal aquaculture ponds in Jiangsu shows an increasing trend in the early period and a decreasing trend in the later period. Over the past 37 years, the area of coastal aquaculture ponds has increased by a total of 54,639.73 ha. This study can provide basic data for the sustainable development of coastal aquaculture in Jiangsu, and a reference for related studies in other regions.

Comprehensive impacts of different integrated rice-animal co-culture systems on rice yield, nitrogen fertilizer partial factor productivity and nitrogen losses: A global meta-analysis

Integrated rice-animal co-culture (IRAC) is an ecological agricultural system combining rice cultivation with animal farming, which holds significant implications for food security and agriculture sustainable development. However, the comprehensive impacts of the co-culture on rice yield, nitrogen (N) losses, and N fertilizer partial factor productivity (NPFP) remain elusive and may vary under different environmental conditions and N management. Here, we conducted a meta-analysis of data from various IRAC systems on a global scale, including 371, 298, and 115 sets of data for rice yield, NPFP, and N losses, respectively. The results showed that IRAC could significantly increase rice yield (by 3.47 %) and NPFP (by 4.26 %), and reduce N2O emissions (by 16.69 %), NH3 volatilization (by 11.03 %), N runoff (by 17.72 %), and N leaching (by 19.10 %). Furthermore, there were significant differences in rice yield, NPFP, and N loss among different IRAC systems, which may be ascribed to variations in regional climate, soil variables, and N fertilizer management practices. The effect sizes of rice yield and NPFP were notably correlated with the rate and frequency of N application and the soil clay content. Moreover, a higher amount of precipitation corresponded to a larger effect size on rice NPFP. N2O emissions were closely associated with mean annual air temperature, annual precipitation, N application frequency, soil pH level, soil organic matter content, soil clay content, and soil bulk density. However, NH3 volatilization, N runoff, and N leaching exhibited no correlation with either the environmental conditions or the N management. Multivariate regression analysis further demonstrated that the soil clay content and N application rate are pivotal in predicting the effect sizes of rice yield, NPFP, and N2O emissions under IRAC. Specifically, IRAC with a low N application rate in soils with a high clay content could augment the effect size to increase rice NPFP and yield and reduce N2O emissions. In conclusion, IRAC offers a potent strategy to optimize rice yield and NPFP as well as mitigate N losses.

Occurrence, distribution, sources, and risk assessment of organophosphate esters in typical coastal aquaculture waters of China

This study monitored 20 organophosphate esters (OPEs) in water and sediment from three typical mariculture bases (Yunxi Marine Ranching (YX), Hangzhou Bay (HZB), and Zhelin Bay (ZLB)) and Meiliang Bay (MLB) of Taihu Lake in China, focusing on the spatial distribution and sources of OPEs. Moreover, the occurrence and risk of OPEs in fishes from ZLB were evaluated. The ∑OPE concentrations in waters followed the order MLB (591 ng/L) > YX (102 ng/L) > HZB (70.0 ng/L) > ZLB (37.4 ng/L), with tri(1-chloro-2-propyl) phosphate (TCIPP), triethyl phosphate (TEP), and tri(2-chloroethyl) phosphate (TCEP) being the dominant OPEs. Significantly higher ∑OPE concentrations were found in sediment in MLB compared to the other three areas with similar levels. The decreasing concentrations of OPEs from nearshore to offshore areas in HZB and MLB indicated that terrigenous input is the main source of OPEs. The even distribution of OPEs in YX and ZLB combined with PCA analysis suggested ship traffic or aquaculture activities are also potential sources. The ∑OPE concentrations in fishes ranged from 0.551-2.45 ng/g wet weight, with TCIPP, tri-phenyl phosphate (TPHP), and TCEP being the main OPEs. Hydrophobicity was a key factor affecting the sediment-water distribution coefficients and the bioaccumulation factors of OPEs. The human exposure to OPEs through consumption of fishes from ZLB had a low health risk.

Fish-mussel-algae-bacteria model remedied eutrophication pollution: Application in Dongxiang district reservoir

Eutrophication pollution has become an important ecological problem in China. Biological treatment is a common means to repair eutrophication pollution. Therefore, based on the biological manipulation technology, we put forward a fishing scheme for the Xiaoxiangshan and Shizishan reservoirs in Dongxiang District, which have been in a serious eutrophication pollution level for a long time, that is, to improve the quality and control water by operating fish, mussel, algae, and bacteria. The monitoring results in the middle stage of treatment showed that the structure of phytoplankton changed, and the degree of eutrophication pollution improved. In the later stage of treatment, the plankton diversity and richness of the two reservoirs increased significantly, the density and biomass of Cyanobacteria decreased significantly, and the degree of eutrophication pollution decreased to mesotrophic type. Overall, our research puts forward new ideas for the prevention and control of water eutrophication pollution and provides a reference for other kinds of water body treatment.

Social-ecological vulnerability and risk of China's marine capture fisheries to climate change

Climate change is a new disrupter to global fisheries systems and their governance frameworks. It poses a pressing management challenge, particularly in China, which is renowned as the world's largest fishing country and seafood producer. As climate change continues to intensify in the region and climate awareness grows within the country's national policy, the need to understand China's fisheries' resilience to the escalating climate crisis becomes paramount. In this study, we conduct an interdisciplinary analysis to assess the vulnerability and risk of China's marine capture fisheries in response to climate change. This study employs a spatially explicit, indicator-based approach with a coupled social-ecological framework, focusing on 67 species and 11 coastal regions. By integrating diverse sets of climatic, ecological, economic, societal, and governance indicators and information, we elucidate the factors that could hinder climate adaptation, including a limited understanding of fish early life stages, uncertainty in seafood production, unequal allocation and accessibility of resources, and inadequate consideration of inclusive governance and adaptive management. Our results show that species, which have managed to survive the stress of overfishing, demonstrate a remarkable ability to adapt to climate change. However, collapsing stocks such as large yellow croaker face a high risk due to the synergistic effects of inherent biological traits and external management interventions. We emphasize the imperative to build institutional, scientific, and social capacity to support fisheries adaptation. The scientific insights provided by this study can inform fisheries management decisions and promote the operationalization of climate-resilient fisheries in China and other regions.

Development, validation, and implementation of an ultratrace analysis method for the determination of moenomycin A, in aquatic animal products

Moenomycin A, an antimicrobial growth promoter widely used as an additive in aquaculture feedstuffs, has been restricted for use in the European Union and China due to its potential risk of promoting resistant strains of pathogenic bacteria and causing residues in aquatic animal products. Although methods for analyzing moenomycin A in feedstuffs have been developed, no established method exists for aquatic matrices. In this study, we present, for the first time, a sensitive and validated high-performance liquid chromatography-tandem mass spectrometry (HPLC-MS/MS) method for the determination of moenomycin A in aquatic animal products. Samples were extracted using methanol and purified with the QuEChERS method employing C18 sorbent. The aliquot was dried under a nitrogen stream, reconstituted with methanol-water solvent, and analyzed by HPLC-MS/MS. The developed method exhibited good linearity (r2 > 0.995) over a wide concentration range (1-100 μg/L) and a low limit of detection (1 µg/kg). Average recoveries ranged between 70 and 110% at spiked concentrations of 1, 50, and 100 μg/kg, with associated intra- and inter-day relative standard deviations of 1.25 to 7.32% (n = 6) and 2.91 to 10.08% (n = 3), for different representative aquatic animal production, respectively. To the best of our knowledge, this is the first reported HPLC-MS/MS method for the quantification of moenomycin A in aquatic animal products. The new approach was effectively employed in the analysis of moenomycin A across various aquatic samples.

Aquaculture activities influencing the generation of geosmin and 2-methylisoborneol: a case study in the aquaculture regions of Hongze Lake, China

Contamination by odor substances such as geosmin (GSM) and 2-methylisoborneol (2-MIB) was examined in the cultured water from aquaculture farming in the region of the Hongze Lake in 2022, and some factors influencing residual levels of them in the water were analyzed. Geographically, high concentrations of GSM were located mainly in the north and northeast culture areas of the lake, while those of 2-MIB were found in the northeast and southwest. Analysis of the water in the enclosure culture revealed significant differences in the concentrations of GSM and 2-MIB among the cultured species. The mean concentrations of GSM in culture water were ranked in the order: crab > the four major Chinese carps > silver and bighead carp, and silver and bighead carp > crab > the four major Chinese carps for 2-MIB. The concentration of GSM was significantly higher at 38.99 ± 18.93 ng/L in crab culture water compared to other fish culture water. Significant differences were observed in GSM concentrations between crab enclosure culture and pond culture, while 2-MIB levels were comparable. These findings suggest that cultural management practices significantly affect the generation of odor substances. The taste and odor (T&O) assessment revealed that the residual levels of GSM and 2-MIB in most samples were below the odor threshold concentrations (OTCs), although high levels of GSM and 2-MIB in all water bodies were at 30.9% and 27.5%, respectively. Compared with the corresponding data from other places and the regulation guidelines of Japan, USA, and China, the region in the Hongze Lake is generally classified as a slightly T&O area, capable of supporting the aquaculture production scale.

Spent shell as a calcium source for constructing calcium vanadate for high-performance Zn-ion batteries

In this article, waste shell is directly used as a raw material to synthesize CaV3O7 as a cathode for aqueous zinc ion batteries. The obtained cathode material exhibits better performance than that of CaV3O7 prepared from pure calcium carbonate as a raw material. At 0.1 A g-1, the CaV3O7 prepared by spent shell as a calcium source displays a highly reversible discharge capacity of 373 mA h g-1. A high initial discharge capacity of 177.7 mA h g-1 can be gained at 5.0 A g-1, and the specific capacity remains at 133.3 mA h g-1 with a capacity retention of 75% after 3000 cycles. This work may spark inspiration for energy storage and generate more effective routes for recycling solid waste.

Comparative assessment of Chinese mitten crab aquaculture in China: Spatiotemporal changes and trade-offs

The increasing human demand for high-quality animal protein has provided impetus for the development of aquaculture. Chinese mitten crab (Eriocheir sinensis) is a catadromous species rapidly being cultured in China but scientific literature documenting its life cycle environmental and economic consequences remains scarce. This study aims to address this gap by examining the spatio-temporal evolution of crab aquaculture in China since the 2000s and evaluating the environmental and economic characteristics along its life-cycle stages: megalopa, juvenile crab, and adult crab cultivation. The geostatistical analysis shows a more dispersed pattern of crab aquaculture nationally as crab grows, with coastal provinces that have brackish water for megalopa cultivation but wider spatial coverage for juvenile and adult crab cultivation. Our findings reveal that the production of 1 ton of live-weight crab results in 7.65 ton of CO2 equivalent of greenhouse gas emissions, surpassing previous estimates for finfish fish production by approximately 50%. Most environmental pressures occur during the adult crab cultivation stage, with significant contributions from upstream processes such as electricity and feed production. By comparing between different production systems, our study shows that crab aquaculture in lake systems performs better than pond systems in terms of most global environmental impact categories and economic considerations. This work contributes to the existing literature by elucidating the spatio-temporal changes of crab aquaculture boom in China and constructing a representative life cycle data pool that broadens the benchmark knowledge on its environmental and economic characteristics. We highlight the trade-offs between environmental and economic performance as well as the balance between global and local environmental impacts to promote sustainable growth in the aquaculture industry.

Challenges facing sustainable protein production: Opportunities for cereals

Rising demands for protein worldwide are likely to drive increases in livestock production, as meat provides ∼40% of dietary protein. This will come at a significant environmental cost, and a shift toward plant-based protein sources would therefore provide major benefits. While legumes provide substantial amounts of plant-based protein, cereals are the major constituents of global foods, with wheat alone accounting for 15-20% of the required dietary protein intake. Improvement of protein content in wheat is limited by phenotyping challenges, lack of genetic potential of modern germplasms, negative yield trade-offs, and environmental costs of nitrogen fertilizers. Presenting wheat as a case study, we discuss how increasing protein content in cereals through a revised breeding strategy combined with robust phenotyping could ensure a sustainable protein supply while minimizing the environmental impact of nitrogen fertilizer.

Capturing the influence of submarine groundwater discharge on nutrient speciation dynamics within an estuarine aquaculture ecosystem

Submarine groundwater discharge (SGD) plays a crucial role in nutrient dynamics and eutrophication status of the typical estuarine ecosystems, which are hotspots for groundwater-borne nutrient and are sensitive to aquaculture activities. To evaluate the significant role of SGD in regulating nutrient dynamics in an aquaculture estuary, a radium mass balance model combined biological feeding experiment was carried out in the present study. The results demonstrated that SGD fluxes were estimated to be 15.9 ± 9.41 cm d-1, 18.1 ± 8.51 cm d-1, and 23.0 ± 13.7 cm d-1 during July 2019, October 2019 and April 2021, and the SGD-driven dissolved inorganic/organic nutrient fluxes were 0.6-3.1-fold, 0.2-0.9-fold and 0.4-29-fold higher than those of riverine input, respectively. Seasonal variabilities of SGD rates indicated that saline SGD is dominated and is primarily modified by the oceanic forcing stimulated by tidal and wave dynamics. The contrasting conditions between bottom-up (groundwater- and river-derived nutrient fluxes) and top-down (nutrient responses in estuarine waters), showed the significance of seasonal differences in the biochemical mechanisms and aquaculture effects of modifying nitrogen dynamics. Dissimilatory nitrate reduction to ammonium and nitrification were responsible for the contrasting NOx- (NO2- and NO3-) and NH4+ conditions in July and October, respectively, and these factors jointly regulated NOx- and NH4+ in April. Dissolved organic nitrogen (DON) was the predominant component among the three seasons, except for DON degeneration in October, and it increased due to NH4+ assimilation by the phytoplankton community. These findings indicated that biochemical transformation has potential ramifications for the dynamics of SGD-driven nutrients and the management in marine aquaculture ecosystems.

Anthropogenic activities and environmental filtering have reshaped freshwater fish biodiversity patterns in China over the past 120 years

Over the past centuries, freshwater fish introductions and extinctions have been the major environmental and ecological crises in various water bodies in China. However, consequences of such crises on freshwater fish biodiversity in China remain only partially or locally studied. Furthermore, identifications of relatively sensitive areas along with stressors (i.e., environmental and anthropogenic drivers) influencing freshwater fish biodiversity patterns are still pending. Taxonomic, functional, and phylogenetic facets of biodiversity can well describe and evaluate the underlying processes affecting freshwater fish biodiversity patterns under different dimensionalities. Here we thus evaluated temporal changes in these facets of freshwater fish biodiversity as well as a new developed biodiversity index, multifaceted changes in fish biodiversity, for over a century at the basin level throughout China using both alpha and beta diversity approaches. We also identified the drivers influencing the changes in fish biodiversity patterns using random forest models. The results showed that fish assemblages in Northwest and Southwest China (e.g., Ili River basin, Tarim basin, and Erhai Lake basin) experienced extreme temporal and multifaceted changes in the facets of biodiversity compared with other regions, and environmental factors (e.g., net primary productivity, average annual precipitation, and unit area) largely drove these changes. Since fish faunas in over 80% of China's water bodies covering more than 80% of China's surface were currently undergoing taxonomic, functional, and phylogenetic homogenization, targeted conservation and management strategies should be proposed and implemented, especially for the areas with relatively high changes in biodiversity.

Common carp intelectin 3 (cITLN3) plays a role in the innate immune response

Intelectin is a lectin with the capacity to recognize and bind to carbohydrates. In this study, we successfully cloned cITLN3 from common carp, which consists of a signal peptide domain, a FReD domain, and an intelectin domain. The expression levels of cITLN3 were detected in various organs of common carp, including the liver, head kidney, spleen, foregut, midgut, and hindgut, with the highest expression observed in the liver. Following infection with Staphylococcus aureus (S. aureus) or Aeromonas hydrophila (A. hydrophila), the expression level of cITLN3 was significantly upregulated in all organs of common carp. Subsequently, we expressed and purified the recombinant cITLN3 protein using an E. coli expression system. The cITLN3 could aggregate both gram-positive and gram-negative bacteria in the presence of Ca2+, with a stronger affinity for gram-positive bacteria. Moreover, our study demonstrated that cITLN3 displayed a higher binding affinity towards PGN compared to LPS. Furthermore, we observed that cITLN3 had the potential to inhibit bacterial proliferation in common carp and safeguard intestinal integrity during bacterial stimulation. And the results also indicated that cITLN3 might played a role in the Toll-like receptors (TLRs) signaling pathway activation.

Effects of dietary plant protein sources intake on growth, digestive enzyme activity, edible tissue nutritional status and intestinal health of the omnivorous Redclaw crayfish, Cherax quadricarinatus

For the omnivorous Cherax quadricarinatus crayfish, plant raw materials can be good alternatives to dietary fish meal (FM). A 56-d feeding trial was conducted in C. quadricarinatus (11·70 (se 0·13) g). Diet with 100 % FM as the protein source was the control. Seven experimental diets were formulated by replacing 75 or 100 % of FM with soyabean meal (SM75, SM100) or cottonseed meal (CM75 and CM100), and a mixture of SM and CM (protein content is 1:1) replacing 50, 75 or 100 % of FM (SC50, SC75 and SC100). Crayfish fed the CM100 and SC100 showed significantly lower weight gain (WG), specific growth rate, trypsin and pepsin activities compared with the control diet. Crayfish in CM100 group showed significantly higher GPx, alanine aminotransferase, aspartate aminotransferase activities and malondialdehyde content than the control. SM100 and CM100 diets can cause slight separation of the peritrophic membrane from the intestinal folds. The pepsin activity of crayfish in SC50 was significantly higher than those in other experimental diets. The highest WG and muscle arginine content were also found in crayfish fed SC50. The relative abundance of Proteobacteria, Unclassified Enterobacteriaceae and Candidatus Bacilloplasma was significantly higher, but Actinobacteriota was significantly lower in SM100, CM100 and SC100 than in control. Microbiota functional prediction indicated that the relative abundance of 'cell motility' pathway in crayfish fed CM100 was significantly decreased compared with the control. In conclusion, only half of the FM can be effectively substituted with a mixture of SM and CM (protein content is 1:1) for C. quadricarinatus.

Effects of short-term water velocity stimulation on the biochemical and transcriptional responses of grass carp (Ctenopharyngodon idellus)

Since 2011, ecological operation trials of the Three Gorges Reservoir (TGR) have been continuously conducted to improve the spawning quantity of the four major Chinese carp species below the Gezhouba Dam. In particular, exploring the effects of short-term water velocity stimulation on ovarian development in grass carp (Ctenopharyngodon idellus) is essential to understand the response of natural reproduction to ecological flows. We performed ovary histology analysis and biochemical assays among individuals with or without stimulation by running water. Although there were no obvious effects on the ovarian development characteristics of grass carp under short-term water velocity stimulation, estradiol, progesterone, follicle-stimulating hormone (FSH), and triiodothyronine (T3) concentrations were elevated. Then, we further explored the ovarian development of grass carp under short-term water velocity stimulation by RNA sequencing of ovarian tissues. In total, 221 and 741 genes were up- or downregulated under short-term water velocity stimulation, respectively, compared to the control group. The majority of differentially expressed genes (DEGs) were enriched in pathways including ABC transporters, cytokine-cytokine receptor interaction, ECM-receptor interaction, and steroid hormone biosynthesis. Important genes including gpr4, vtg1, C-type lectin, hsd17b1, cyp19a1a, cyp17a1, and rdh12 that are involved in ovarian development were regulated. Our results provide new insights and reveal potential regulatory genes and pathways involved in the ovarian development of grass carp under short-term water velocity stimulation, which may be beneficial when devising further ecological regulation strategies.

Assessment of the benefits of essential fatty acids and risks associated with antimicrobial residues in aquatic products: A case study of Chinese mitten crab (Eriocheir sinensis)

Much attention has been given to the safety and quality of aquatic products, including consuming Chinese mitten crab (Eriocheir sinensis), which offers both nutritional benefits and toxicological risks. Eighteen sulfonamides, 9 quinolones and 37 fatty acids were analyzed in 92 crab samples from primary aquaculture provinces in China. Enrofloxacin and ciprofloxacin have been mentioned as typical antimicrobials occurring at the greatest concentrations (>100 μg/kg, wm). By use of an in vitro method, the proportions of enrofloxacin, ciprofloxacin and essential fatty acids (EFAs, DHA and EPA) in ingested nutrients were determined to be 12 %, none and 95 %, respectively. The risk-benefit quotient (HQ) between the adverse effects of antimicrobials and nutritional benefits of EFAs in crabs found that HQs based on data after digestion were significantly less (HQ = 0.0086) than that of the control group where no digestion occurred (HQ = 0.055). This result suggested that (1) there was less risk posed by antimicrobials due to the consumption of crab, and (2) ignoring the bioaccessible fraction of antimicrobials in crabs might overestimate risks to the health of humans due to dietary exposure. Meaning bioaccessibility can improve the accuracy of the risk assessment process. Realistic risk evaluation should be recommended to achieve a quantified assessment of the dietary risks and benefits of aquatic products.

A Review of Antibiotics, Antibiotic Resistant Bacteria, and Resistance Genes in Aquaculture: Occurrence, Contamination, and Transmission

Antibiotics are commonly used to prevent and control diseases in aquaculture. However, long-term/overuse of antibiotics not only leaves residues but results in the development of antibiotic resistant bacteria (ARB) and antibiotic resistance genes (ARGs). Antibiotics, ARB, and ARGs are widespread in aquaculture ecosystems. However, their impacts and interaction mechanisms in biotic and abiotic media remain to be clarified. In this paper, we summarized the detection methods, present status, and transfer mechanisms of antibiotics, ARB, and ARGs in water, sediment, and aquaculture organisms. Currently, the dominant methods of detecting antibiotics, ARB, and ARGs are UPLC-MS/MS, 16S rRNA sequencing, and metagenomics, respectively. Tetracyclines, macrolides, fluoroquinolones, and sulfonamides are most frequently detected in aquaculture. Generally, antibiotic concentrations and ARG abundance in sediment are much higher than those in water. Yet, no obvious patterns in the category of antibiotics or ARB are present in organisms or the environment. The key mechanisms of resistance to antibiotics in bacteria include reducing the cell membrane permeability, enhancing antibiotic efflux, and structural changes in antibiotic target proteins. Moreover, horizontal transfer is a major pathway for ARGs transfer, including conjugation, transformation, transduction, and vesiculation. Identifying, quantifying, and summarizing the interactions and transmission mechanisms of antibiotics, ARGs, and ARB would provide useful information for future disease diagnosis and scientific management in aquaculture.

Development of a surface plasmon resonance (SPR) assay for rapid detection of Aeromonas hydrophila

Aquaculture plays an increasingly important if not critical role in the current and future world food supply. Aeromonas hydrophila, a heterotrophic, Gram-negative, bacterium found in fresh or brackish water in warm climates poses a serious threat to the aquaculture industry in many areas, causing significant economic losses. Rapid, portable detection methods of A. hydrophila are needed for its effective control and mitigation. We have developed a surface plasmon resonance (SPR) technique to detect PCR (polymerase chain reaction) products that can replace agarose gel electrophoresis, or otherwise provide an alternative to costlier and more complicated real-time, fluorescence-based detection. The SPR method provides sensitivity comparable to gel electrophoresis, while reducing labor, cross-contamination, and test time, and employs simpler instrumentation with lower cost than real-time PCR.

Environmental footprints of farmed chicken and salmon bridge the land and sea

Food production, particularly of fed animals, is a leading cause of environmental degradation globally.^1,2 Understanding where and how much environmental pressure different fed animal products exert is critical to designing effective food policies that promote sustainability.³ Here, we assess and compare the environmental footprint of farming industrial broiler chickens and farmed salmonids (salmon, marine trout, and Arctic char) to identify opportunities to reduce environmental pressures. We map cumulative environmental pressures (greenhouse gas emissions, nutrient pollution, freshwater use, and spatial disturbance), with particular focus on dynamics across the land and sea. We found that farming broiler chickens disturbs 9 times more area than farming salmon (∼924,000 vs. ∼103,500 km²) but yields 55 times greater production. The footprints of both sectors are extensive, but 95% of cumulative pressures are concentrated into <5% of total area. Surprisingly, the location of these pressures is similar (85.5% spatial overlap between chicken and salmon pressures), primarily due to shared feed ingredients. Environmental pressures from feed ingredients account for >78% and >69% of cumulative pressures of broiler chicken and farmed salmon production, respectively, and could represent a key leverage point to reduce environmental footprints. The environmental efficiency (cumulative pressures per tonne of production) also differs geographically, with areas of high efficiency revealing further potential to promote sustainability. The propagation of environmental pressures across the land and sea underscores the importance of integrating food policies across realms and sectors to advance food system sustainability.

Investigating quorum-quenching marine bacilli as potential biocontrol agents for protection of shrimps against Early Mortality Syndrome (EMS)

Early Mortality Syndrome (EMS) has been a major problem for shrimp aquaculture in Southeast Asia due to its epizootic prevalence within the region since the first reported case in 2009. This study explores the application of halophilic marine bacilli isolated from coral mucus and their quorum-quenching abilities as potential biocontrol agents in aquaculture systems to combat the causative agent of EMS, Vibrio parahaemolyticus. N-acylhomoserine lactone (AHL)-degrading (AiiA) activity was first screened by PCR then confirmed by bio-reporter assay, and a combination of 16S rDNA sequence analysis and quantitative phenotype assays including biofilm-formation and temperature-growth responses were used to demonstrate diversity amongst these quorum-quenching isolates. Three phenotypically distinct strains showing notable potential were chosen to undergo co-cultivation as a method for strain improvement via long term exposure to the pathogenic V. parahaemolyticus. The novel approach taken led to significant improvements in antagonism and quorum quenching activities as compared to the ancestral wild-type strains and offers a potential solution as well as pathway to improve existing beneficial microbes for one of the most pressing issues in shrimp aquacultures worldwide.

Metal Biological Enrichment Capacities, Distribution Patterns, and Health Risk Implications in Sea Bass (Lateolabrax japonicus)

Seabass (Lateolabrax japonicus) is a major aquacultured fish species worldwide. The bioconcentration, bioaccumulation, and biomagnification of metals in water, sediments, and commercial feed were investigated in L. japonicus from an aquaculture pond in the Pearl River Delta of South China. Aluminum (Al), chromium (Cr), manganese (Mn), iron (Fe), nickel (Ni), copper (Cu), zinc (Zn), arsenic (As), cadmium (Cd), and lead (Pb) were determined in the dorsal muscle, viscera, backbone, gill, and stomach contents of L. japonicus. The gill and stomach contents had higher levels of bioconcentration of most metals than other parts of fish. Based on the bioaccumulation factor, the gill and backbone exhibited the highest accumulation of Zn, while the viscera had the highest capacity to accumulate Cu. The mean biomagnification factor values exceeded for As in dorsal muscle, for Cu in the viscera, for Cr and Pb in the gill, and for Al, Cr, Fe, Cu, and Pb in the stomach contents, indicating efficient bioaccumulation from commercial feed and their habitat. Non-metric multidimensional scaling analysis revealed two groups that resulted from the accumulation of metals in various parts of L. japonicus. Moreover, health risk assessment indicated that no notable adverse health effects occurred from the ingestion of L. japonicus.

Common carp Peptidoglycan Recognition Protein 2 (CcPGRP2) plays a role in innate immunity for defense against bacterial infections

PGRP is a family of pattern recognition molecules of the innate immune system. PGRPs are conserved from insects to mammals and have diverse functions in antimicrobial defense. Here we cloned a common carp PGRP ortholog, CcPGRP2 containing a conserved C-terminal PGRP domain. We tested the expression levels of CcPGRP2 in the liver, spleen, kidney, foregut, midgut, and hindgut of the highest level in the liver. The expression of CcPGRP2 upregulated in common carp infected with Aeromonas hydrophila (A. hydrophila) or Staphylococcus aureus (S. aureus). Recombinant CcPGRP2 protein expressed in Escherichia coli (E. coli) system and the purified CcPGRP2 could maintain the integrity of intestinal mucosa of common carp infected with A. hydrophila. In addition, CcPGRP2 could agglutinate or bind both gram-positive and gram-negative bacteria in a Zn²⁺-dependent manner. CcPGRP2 has a stronger agglutination and bacterial binding ability in gram-positive bacteria than in gram-negative bacteria. It is perhaps because CcPGRP2 could bind peptidoglycan (PGN) with a higher degree to lipopolysaccharide (LPS). And CcPGRP2 shows antimicrobial activities in the presence of Zn²⁺. Our results of CcPGRP2 provided new insight into the function of PGRP in the innate immunity of the common carp.

Metagenomic insights into feasibility of agricultural wastes on optimizing water quality and natural bait by regulating microbial loop

Effective screening feed substitutes for improving water quality in aquaculture systems has become a trending research topic now. In this study, three typical organic agricultural wastes, including sugar cane bagasse (SC), coconut shell powder (CS), and corn cob powder (CC), were selected to evaluate their potential roles on the optimization of water quality and natural bait compared to aquafeeds. Fish feed resulted in the highest growth rate of fish but the worst water quality. Organic detritus addition markedly improved the water quality, especially soluble reactive phosphorus (SRP, decrease of 56-61%) and ammonium (decrease of 16% in SC, 47% in CC). Specially, SC induced core microbes to mediate nutrients transformation and recycling (N₂-fixation, ammonification, nitrification, dissimilatory nitrate reduction to ammonia and organic nutrients decomposition), which facilitated the primary productivity based on their positive relationships. This further reduced the available nutrients (especially SRP) in the water and built a mutually beneficial microbial loop. In addition, SC addition increased the abundance of genes involved in amino acids biosynthesis pathways, photosynthesis, and carbon fixation. These results led to energy transfer to higher trophic levels. The addition of CC had a better effect than SC in terms of lower nitrogen levels and a higher fish growth rate (19% in CC, 5% in SC). However, low temperatures and carbon accumulation jointly drive the anaerobic decomposition, resulting in unhealthy microbial loops and low fish growth rates. In contrast to the direct consumption of fish feed, organic detritus can induce more natural bait to provide food for fish by regulating the microbial loop, as showed by the microbial community composition in the water and fish gut. To comprehensively assess water quality, natural bait, and fish growth and quality, certain organic detritus should be considered as an auxiliary material to partially replace feed for healthy and sustainable aquaculture systems.

Infertility control of transgenic fluorescent zebrafish with targeted mutagenesis of the dnd1 gene by CRISPR/Cas9 genome editing

Transgenic technology and selective breeding have great potential for the genetic breeding in both edible fish and ornamental fish. The development of infertility control technologies in transgenic fish and farmed fish is the critical issue to prevent the gene flow with wild relatives. In this study, we report the genome editing of the dead end (dnd1) gene in the zebrafish model, using the CRISPR/Cas9 technology to achieve a loss-of-function mutation in both wild-type zebrafish and transgenic fluorescent zebrafish to develop complete infertility control technology of farmed fish and transgenic fish. We effectively performed targeted mutagenesis in the dnd1 gene of zebrafish with a single gRNA, which resulted in a small deletion (-7 bp) or insertion (+41 bp) in exon 2, leading to a null mutation. Heterozygotes and homozygotes of dnd1-knockout zebrafish were both selected by genotyping in the F 1 and F 2 generations. Based on a comparison of histological sections of the gonads between wild-type, heterozygous, and homozygous dnd1 zebrafish mutants, the dnd1 homozygous mutation (aa) resulted in the loss of germ cells. Still, there was no difference between the wild-type (AA) and dnd1 heterozygous (Aa) zebrafish. The homozygous dnd1 mutants of adult zebrafish and transgenic fluorescent zebrafish became all male, which had normal courtship behavior to induce wild-type female zebrafish spawning. However, they both had no sperm to fertilize the spawned eggs from wild-type females. Thus, all the unfertilized eggs died within 10 h. The targeted mutagenesis of the dnd1 gene using the CRISPR/Cas9 technology is stably heritable by crossing of fertile heterozygous mutants to obtain sterile homozygous mutants. It can be applied in the infertility control of transgenic fluorescent fish and genetically improved farmed fish by selective breeding to promote ecologically responsible aquaculture.

Improved LC/MS/MS Quantification Using Dual Deuterated Isomers as the Surrogates: A Case Analysis of Enrofloxacin Residue in Aquatic Products

Extensive and high residue variations in enrofloxacin (ENR) exist in different aquatic products. A novel quantitative method for measuring ENR using high-performance liquid chromatography-tandem mass spectrometry was developed employing enrofloxacin-d₅ (ENR-d₅) and enrofloxacin-d₃ (ENR-d₃) as isotope surrogates. This reduced the deviation of detected values, which results from the overpass of the linear range and/or the large difference in the residue between the isotope standard and ENR, from the actual content. Furthermore, high residue levels of ENR can be directly diluted and re-calibrated by the corresponding curve with the addition of high levels of another internal surrogate without repeated sample preparation, avoiding the overflow of the instrument response. The validation results demonstrated that the method can simultaneously determine ENR residues from MQL (2 µg/kg) to 5000 × MQL (method quantification limit) with recoveries between 97.1 and 106%, and intra-precision of no more than 2.14%. This method realized a wide linear calibration range with dual deuterated isomers, which has not been previously reported in the literature. The developed method was successfully applied to the analysis of ENR in different aquatic products, with ENR residue levels varying from 108 to 4340 μg/kg and an interval of precision in the range of 0.175~6.72%. These results demonstrate that batch samples with a high variation in ENR residues (over the linear range with a single isotope standard) can be detected by the dual isotope surrogates method in a single sample preparation process.

Species traits determined different responses to "zero-growth" policy in China's marine fisheries

China remains the largest nation of marine capture fisheries in the world in the last few decades, at the cost of offshore fisheries degradation by overfishing. Although fisheries regulations have become gradually tightened, the recovering evidences are weak and the catch species compositions are far from satisfactory. To explore better and reasonable countermeasures, besides the "zero growth" policy (i.e. the national total fisheries production limitation), five targets with different ecological traits were selected for stock assessment and rebuilding by Monte Carlo Catch-Maximum Sustainable Yield method. The results showed the control of total rather than species catch could not lead to the recovery of fisheries and maintain community function. Individual species showed different responses to overfishing according to their biological characteristics. High trophic level species can be sensitive to overfishing, and difficult to rebuild stocks after collapse. Pelagic small fish resources increased first but eventually decreased under high fishing pressure. Scientific-based restocking can enhance resource recovery. Besides "zero growth" policy, fisheries management should be further refined, in particular for main economic species based on their biological traits, as well as the support of reliable fisheries statistics and regulation implementation in place. To relieve the conflict between rising fishery products demand and falling catches, aquaculture and seeking resources from the high seas and EEZs are supposed to be successful ways, on the premise of taking full account of ecological health, maritime safety, and food security.

Tea Tree Oil Mediates Antioxidant Factors Relish and Nrf2-Autophagy Axis Regulating the Lipid Metabolism of Macrobrachium rosenbergii

Both oxidative stress and autophagy refer to regulating fat metabolism, and the former affects autophagy, but the role and mechanism of the antioxidant-autophagy axis in regulating lipid metabolism remains unclear. As an antioxidant, tea tree oil (TTO) has little research on the regulatory mechanism of lipid metabolism in crustaceans. This study investigated whether TTO could alter hepatopancreatic lipid metabolism by affecting the antioxidant-autophagy axis. Feed Macrobrachium rosenbergii with three different levels of TTO diets for 8 weeks: CT (0 mg/kg TTO), 100TTO (100 mg/kg TTO), and 1000TTO (1000 mg/kg TTO). The results showed that 100TTO treatment reduced the hemolymph lipids level and hepatopancreatic lipid deposition compared to CT. In contrast, 1000TTO treatment increased hepatopancreatic lipid deposition, damaging both morphology and function in the hepatopancreas. The 100TTO treatment promoted lipolysis and reduced liposynthesis at the transcriptional level compared to the CT group. Meanwhile, it improved the hepatopancreas antioxidant capacity and maintained mitochondrial structural and ROS homeostasis. In addition, it simultaneously activated the expression of transcription factors Keap1-Nrf2 and Imd-Relish. By contrast, the 1000TTO group significantly enhanced the ROS level, which considerably activated the Keap1-Nrf2 signaling expression but had no significant effects on the expression of Imd-Relish. The 100TTO group supplementation significantly enhanced lipid droplet breakdown and autophagy-related genes and protein expression. On the contrary, the 1000TTO group significantly inhibited the expression of genes and proteins related to autophagy. Pearson analysis revealed that Nrf2 has a positive correlation to lipid anabolism-related genes (Fasn, Srebp1, Pparγ) and autophagy regulators (mtor, akt, p62), and were negatively correlated with lipolysis-related genes (Cpt1, Hsl, Ampkα) and autophagy markers (Ulk1, Lc3). Relish was positively correlated with Atgl, Cpt1, Ampkα, Ulk1, and Lc3, and negatively correlated with Pparγ and p62. Moreover, Keap1 and Imd were negatively correlated with p62 and mtor, respectively. In sum, 100 mg/kg TTO enhanced antioxidant activity and increased autophagy intensity through the Relish-Imd pathway to enhance lipid droplet breakdown, while 1000 mg/kg TTO overexpressed Nrf2, thus inhibiting autophagy and ultimately causing excessive lipid deposition and peroxidation. Our study gives a fresh perspective for deciphering the bidirectional regulation mechanism of lipid metabolism by different doses of TTO based on the antioxidant-autophagy axis.

Nile Tilapia (Oreochromis niloticus Linnaeus, 1758) Invasion Caused Trophic Structure Disruptions of Fish Communities in the South China River—Pearl River

Widespread introductions of non-native species, including aquaculture and ornamental species, threaten biodiversity and ecosystem functioning by modifying the trophic structure of communities. In this study, we quantified the multiple facets of trophic disruption in freshwater communities invaded by Nile tilapia, by comparing uninvaded and invaded rivers downstream of the Pearl River, China. Nile tilapia invasion reduced the trophic status of native fish species by forcing native herbivores and planktivores to seek new food sources. The food chain was also shortened by decreasing the trophic levels of native invertivores, omnivores, and piscivores, while the total isotopic niche area (TA) of native invertivores, omnivores, piscivores, and planktivores species also decreased. Simultaneously, Nile tilapia invasion affected the isotopic diversity of the fish community. Decreasing isotopic richness (IRic), isotopic evenness (IEve), and increasing isotopic uniqueness (IUni) indicated that Nile tilapia had a high trophic niche overlap with native species and competed with native species for food resources, and even caused the compression of the trophic niche of native species. Understanding the process described in this study is essential to conserve the stability of freshwater ecosystems, and improve the control strategy of alien aquatic organisms in south China.

Carp Breeding in the Carpathian Basin with a Sustainable Utilization of Renewable Natural Resources

In the Central European region, there is a long tradition of breeding fish in artificially constructed ponds. As the area belongs to the temperate zone, farmed fish need to survive cold winter periods. Common carp (Cyprinus carpio L.), which is an omnivorous, bioturbating species, is well adapted to warm and cold periods and the alluvial water environment. Since the Middle Ages, a large scale, efficient carp farming methodology has been developed in the region, where production is based on natural resources (protein and fatty acid sources) of renewable water ecosystems. This summary aims to present this well-developed breedi:ng method through discussing aspects of hydrobiology and energy transfer through the food chain as well. Capabilities and effects of agro-technical treatments such as liming and organic manuring, zooplankton management and possible supplementary feedings are also reviewed. Analysing chemical processes of waters uncovers that biological production has no carbon footprint; no carbon dioxide is released into the atmosphere. In contrast, gaseous carbon dioxide diffuses into pond water containing calcium and/or magnesium, then it accumulates in algae production and, through energy migration to upper trophic levels, increases carp production. Thus, it can be declared that pond-farmed carp provides an environmentally friendly, delicious meat among products of animal origin.

Multi-kingdom microbiota and functions changes associated with culture mode in genetically improved farmed tilapia (Oreochromis niloticus)

Genetically improved farmed tilapia (GIFT, Oreochromis niloticus) are intensively farmed in China, where most of the yield derives from the pond culture system (PCS). The in-pond raceway system (IPRS) is a new type of highly efficient aquaculture mode, and has been recommended as a novel system for GIFT farming. To determine the effects of these culture modes on the gut microbiome of GIFT, we conducted a 90-days experiment in IPRS and PCS units. A 16S rRNA gene profile analysis showed that the composition of gut microbiota in GIFT under IPRS and PCS conditions gradually separated as rearing progressed, with divergent responses by the midgut and hindgut bacteria. The α-diversity in hindgut decreased significantly by day 90, as compared with on day 7 (p < 0.05), with a significantly greater decrease in PCS-reared fish than in IPRS fish (p < 0.05). The α-diversity of microbiota in midgut remained stable (p > 0.05). The overall dominant gut bacteria were Bacteroidetes, Proteobacteria, and Firmicutes. Rearing mode affected the taxonomic profile of the gut bacteria; in midgut, IPRS samples had more Firmicutes and Fusobacteria compared with PCS samples, but less Proteobacteria, Verrucomicrobia, and Actinobacteria. Firmicutes was enriched in IPRS hindgut, and Fusobacteria was enriched in PCS hindgut. Using random-forest models and LEfSe, we also screened core taxa that could discriminate between the gut microbial communities under IPRS and PCS conditions. The genus Cetobacterium (of family Fusobacteriaceae) was significantly enriched in midgut in IPRS fish, and enriched in hindgut in PCS fish. The genus Clostridium sensu stricto (of family Clostridiaceae 1) was significantly enriched in both IPRS midgut and hindgut. Analysis with PICRUSt2 software revealed that the culture modes were similar in their effects on the gut microbial metabolic functions. The predicted pathways were significantly enriched in the metabolism class (level 1). Further, the relative abundance of functions related to amino acid metabolic, carbohydrate metabolic, energy metabolic, and metabolic of cofactors and vitamins were high at hierarchy level 2, as the metabolic activity of intestinal bacteria is especially active. Overall, this study enhances our understanding of the characteristics of gut microbiota in GIFT under IPRS and PCS culture modes. Moreover, our findings provide insights into the microecological balance in IPRS units, and a theoretical reference for further development of this culture system.

Food system by-products upcycled in livestock and aquaculture feeds can increase global food supply

Many livestock and aquaculture feeds compete for resources with food production. Increasing the use of food system by-products and residues as feed could reduce this competition. We gathered data on global food system material flows for crop, livestock and aquaculture production, focusing on feed use and the availability of by-products and residues. We then analysed the potential of replacing food-competing feedstuff-here cereals, whole fish, vegetable oils and pulses that account for 15% of total feed use-with food system by-products and residues. Considering the nutritional requirements of food-producing animals, including farmed aquatic species, this replacement could increase the current global food supply by up to 13% (10-16%) in terms of kcal and 15% (12-19%) in terms of protein content. Increasing the use of food system by-products as feed has considerable potential, particularly when combined with other measures, in the much-needed transition towards circular food systems.

Effects of coastal aquaculture on sediment organic matter: Assessed with multiple spectral and isotopic indices

Sediment organic matter (SOM) is important in the biogeochemical cycling of carbon, nutrients, and pollutants in the coastal environment, which is increasingly disturbed by aquaculture that is particularly intense in China. However, the identification of aquaculture signals in SOM is rather challenging in the complex coastal environment that receives materials from a variety of sources. This was studied in a typical culture area of shellfish and algae in SE China from July 2019 to October 2020, using a combination of elemental (OC, TN, N/C), isotopic (δ¹³C and δ¹⁵N), spectral (absorption spectroscopy and fluorescence EEMs-PARAFAC), and statistical analysis (principal component analysis, PCA). All indices of SOM quantity and several spectral indices for the SOM composition correlated significantly with grain size, with lower SOM quantity and higher autochthonous contribution in coarse sediments. The strong correlations between elemental and spectral indices suggested that optical analysis could provide valuable indices for assessing the quantity of bulk organic matter. The comparison of SOM indices between different zones and between different months showed an overall limited influence of shellfish and laver culture. This indicated the sustainability of these types of aquaculture that require no manual addition of feeds and thus are generally clean. The further applications of end-member mixing analysis using the IsoSource program and PCA were more sensitive, which identified the removal of SOM by shellfish in the growing season and the contribution from shellfish residuals after the harvest and the cultured laver at some locations. Overall, our results have implications for a better understanding of the biogeochemical processes and ecosystem sustainability in the coastal environment under intense aquaculture activities.

Occurrence and human health risk assessment of antibiotics in cultured fish from 19 provinces in China

The occurrence of antibiotics and potential health risk of 300 cultured fish samples from 19 provinces in China were investigated. The levels of 28 antibiotics (15 fluoroquinolones, 4 tetracyclines, 8 macrolides and rifampin) in 8 fish species were measured through liquid chromatography electrospray tandem mass spectrometry. As a result, 10 antibiotics were detected with an overall detection frequency of 24.3%, and the individual detection frequency of antibiotics ranged from 0.33 to 16.7%. The extremely high concentrations (above 100 µg/kg) of doxycycline and erythromycin were found in the samples. Antibiotics with high detection frequency was noticed in largemouth bass (41.2%), followed by snakehead (34.4%) and bream (31.2%). Specifically, Heilongjiang, Xinjiang, Qinghai and Gansu presented high detection frequency values of more than 60%. Moreover, the highest mean concentration was observed in Shandong, and the concentration covered from 34.8 µg/kg to 410 µg/kg. Despite the high detection frequency and levels of antibiotics were found in samples, ingestion of cultured fish was not significantly related to human health risks in China, according to the calculated estimated daily intakes and hazard quotients. These results provided us the actual levels of antibiotics in cultured fish and human health risk assessment of consuming fishery products.

The judicious use of finite marine resources can sustain Atlantic salmon (salmo salar) aquaculture to 2100 and beyond

The production of farmed Atlantic salmon (Salmo salar) is currently linked to finite marine resources, particularly fish oil (FO) and fish meal (FM). Understanding this relationship in a quantitative manner is imperative if this critical balance is to be maintained within sustainable limits as the industry grows. Here we project the potential production and associated growth of the Atlantic salmon aquaculture industry on the basis of a variety of FO and FM utilization scenarios in aquafeed. Reducing FO and FM dietary inclusion to 3% each could permit production growth of 2% per year until the turn of the century (2097 and beyond 2100, respectively), independent of a host of alternatives now being utilized-with three portions of salmon per week providing almost all the recommended weekly long-chain omega-3 fatty acids for human intake. The Atlantic salmon industry's positive annual growth can continue in an era of finite marine resource availability-without the need for additional finite marine resource inputs.

Spatio-temporal variations of litter on Qingdao tourist beaches in China

Beaches are an integral part of coastal tourism, but they are deteriorated by the beachgoers and recreational activities due to lack of adequate beach environmental awareness and management. Litter is widely distributed in marine and coastal environment and has been considered a severe concern. In China investigations to determine the beach litter abundance and pollution level are limited. The aim of this study is to estimate spatio-temporal distribution and composition of litter on 10 well-known Qingdao tourist beaches, involving pollution level by beach quality indexes. Beach litter was collected within an area of 25 × 25 m² in both summer (May, June and July) and winter (Nov, Dec and Jan) seasons, and was classified into eight categories. The abundance of beach litter was found higher in summer (0.13 ± 0.04 items/m²) than in winter (0.04 ± 0.01 items/m²). Overall, the percentage of plastics were higher in both summer (23.48%) and winter (24.04%) than that of other litter categories. Based on Clean Coast Index, 70% of beaches were very clean, 25% clean, and 5% moderately clean. Beach Grade Index showed that 15% beaches were very good, 5% good, 55% fair, and 25% poor. 85% beaches constituted some quantity of hazardous litter and 15% had no hazardous litter for Hazardous Items index. The findings suggest that the sources of beach litter along Qingdao beaches mainly come from the recreational and tourist activities. The substantial quantity of litter is also being transported by ocean (tides or current), which are finally deposited along beachfront. Despite regular cleaning operation along most of Qingdao beaches, suggested management practices involve mitigation measures, source reduction, change in littering behavior to improve further quality of beaches.

Detection and Statistics of Offshore Aquaculture Rafts in Coastal Waters

Offshore aquaculture is critical for a marine fishery economy. The spatial distribution of aquaculture that characterizes it plays a vital role in the sustainable development of marine resources and the protection of the marine environment. In recent years, China’s aquaculture has developed rapidly; specifically, the scale of aquaculture has dramatically expanded, and large-scale aquaculture has gradually grown in popularity. Although high-resolution satellite data can accurately extract aquaculture areas, the extraction of a large area of the sea area requires a copious amount of data. In contrast, medium-resolution satellite images allow for the extraction of aquaculture areas from large sea areas with a smaller amount of data, offering significant advantages. Therefore, we used Landsat8 satellite data to extract and count the number of aquaculture rafts based on the Hough transform and Canny edge detection methods. We tested the accuracy of this method by selecting Haizhou Bay as the study area for the experiment and accuracy verification and found that the automatic extraction accuracy for the number of aquaculture rafts was more than 90%. Additionally, we calculated statistics on the number of aquaculture rafts in Haizhou Bay over the past seven years. The findings presented in this paper offer a significant reference value for local marine utilization, marine environment protection, and marine disaster prevention and mitigation.

Rapid and nondestructive detection of marine fishmeal adulteration by hyperspectral imaging and machine learning

Pure fishmeal (PFM) from whole marine-origin fish is an expensive and indispensable protein ingredient in most aquaculture feeds. In China, the supply shortage of domestically produced PFM has caused frequent PFM adulteration with low-cost protein sources such as feather meal (FTM) and fishmeal from by-products (FBP). The aim of this study was to develop a rapid and nondestructive detection method using near-infrared hyperspectral imaging (NIR-HSI) combined with machine learning algorithms for the identification of PFM adulterated with FTM, FBP, and the binary adulterant (composed of FTM and FBP). A hierarchical modelling strategy was adopted to acquire a better classification accuracy. Partial least squares discriminant analysis (PLS-DA) and support vector machine (SVM) coupled with four spectral preprocessing methods were employed to construct classification models. The SVM with baseline offset (BO-SVM) model using 20 effective wavelengths selected by successive projections algorithm (SPA) and competitive adaptive reweighted sampling (CARS) achieved classification accuracy of 100% and 99.43% for discriminating PFM from the adulterants (FTM, FBP) and adulterated fishmeal (AFM), respectively. This study confirmed that NIR-HSI offered a promising technique for feed mills to identify AFM containing FTM, FBP, or binary adulterants.

Balancing the health effect between risks of methylmercury and benefits of nutrients in consumption of Chinese mitten crab (Eriocheir sinensis) in China

Aquatic products contain both beneficial substances such as polyunsaturated fatty acids and harmful compounds such as methylmercury, and their combined health effects should be assessed at a common end point for a rational analysis. We used a risk-benefit model to assess net IQ point gain from consumption of Chinese mitten crabs (Eriocheir sinensis) from Jiangsu Province. Levels of methylmercury in the edible parts of the crabs ranged from 0.79 to 69.47 μg/kg (mean: 26.88 ± 15.09 μg/kg). Levels of methylmercury did not differ by sampling location. In aquaculture experiments, we simulated artificial pond farming using either iced trash fish or formulated feed. Crabs fed iced trash fish contained 28.72 ± 2.30 mg/g of eicosapentaenoic acid and docosahexaenoic acid and crabs fed formulated feed contained 19.64 ± 3.62 mg/g of eicosapentaenoic acid and docosahexaenoic acid. Model calculations estimated a gain of 7.52 IQ points from consumption of crabs fed formulated feed and 11.00 IQ points from consumption of crabs fed iced trash fish. They are all above the maximum theoretical IQ point gain value. Chinese mitten crab is a kind of high-quality food which is beneficial to the neural development of infants. Our findings may assist in improving crab farming methods and consumption patterns, accelerating the sustainable development of the Chinese mitten crab industry.

Core Gut Microbiota of Shrimp Function as a Regulator to Maintain Immune Homeostasis in Response to WSSV Infection

The gut microbiota is an integral part of the host and has a functional potential in host physiology. Numerous scientific efforts have opened new horizons in gut microbiota research and enhanced the understanding of host-microbe interactions in vertebrates. However, evidence on the association between the gut microbiota and immunity in invertebrates, especially in shrimp, which is an important aquatic animal, is limited. Herein, we conducted a comprehensive analysis based on 16S rRNA gene sequencing and liquid chromatography-coupled mass spectrometry (LC-MS) to investigate the correlation between them. Comparing the gut microbiota among the four different species of shrimp, we found huge variations and determined a core gut microbiota composed of 55 microbes. The environmental challenge of white spot syndrome virus (WSSV) infection led to changes in core microbial structures, but the alteration of core microbiota among different shrimp followed the same trend and showed immune-related function in the prediction of its metabolic potential. In metabolomic analysis, nine significantly upregulated metabolites found after viral infection indicated that they have antiviral potential. Moreover, we found a tight correlation between them and almost half of the core microbiota. These data demonstrate that these metabolites are responsible for maintaining the immune homeostasis of the host and prove the function of the gut microbiota and the related metabolome in antiviral immunity of shrimp.

IMPORTANCE Abundant gut microorganisms constitute a complex microecosystem with the intestinal environment of the host, which plays a critical role in the adjustment of various physiological states of the organism. Sequencing and mass spectrometry data collected from intestinal samples of shrimp after virus infection helped to investigate the special function of the microecosystem and suggested that the gut microbiota has a functional potential in maintaining immune homeostasis of the host under environmental challenge.

In situ application of the diffusive gradients in thin film technique in aquaculture ponds for monitoring antibiotics, hormones, and herbicides

In recent years, as the abuse of antibiotics, hormones, and herbicides has worsened in aquaculture industry, it is important to monitor the concentrations of those trace contaminants in aquaculture water more effortlessly. The aim of this study was to develop a reliable sampling method for chemical monitoring in aquaculture ponds based on the technique of diffusive gradients in thin films (DGT). A binding material (XDA-1 resin) with high adsorption capacity for antibiotics, hormones, and herbicides was selected. In laboratory, the diffusion coefficients of 11 antibiotics, 3 hormones, and 3 herbicides of the XDA-1-DGT devices were tested and ranged from 1.0×10^-6 to 8.7×10^-5 cm²/s. During the in situ application of XDA-1-DGT devices in different aquaculture ponds, concentrations of 11 antibiotics, 3 hormones, and 3 herbicides in aquaculture water (C_SOLN) via grab sampling were also analyzed and found ranging from 0.03 to 6.3 ng/L, lower than the results based on DGT (C_DGT) (1.2-1.3×10² ng/L). The values of C_DGT/C_SOLN were larger than one unit, suggesting that the rates of resupply of target chemicals (antibiotics, hormones, and herbicides) by the desorption and diffusion of pond water were higher than the rates of uptake by XDA-1-DGT, and pond water was proved a sufficient reservoir of antibiotics for DGT application. The value of Log (C_DGT/C_SOLN) of 1.1 derived from the application in the aquaculture ponds of 14 regions in Eastern China can be a reference value for future chemical monitoring based on DGT technique. And the accuracy of this value was found hardly affected by the physical and chemical properties of chemicals with pKa ranging from -1 to 12, Log K_ow ranging from 0 to 4.5, and Log solubility ranging from 0.0 to 4.0.

Microplastics in fish meals: An exposure route for aquaculture animals

Microplastics (MPs) are widely detected in many marine fishes. Fish meal contaminated by MP may constitute a potential threat to aquaculture animals. This study analyzed the characteristics of MP in fish meals from ten major fish meal-producing countries around the world. Microplastics were isolated from fish meal, examined under a microscope and identified using Fourier transform infrared microspectroscopy (μ-FT-IR). The results showed that MP pollution was widely detected in fish meal samples from ten countries. The average MP abundance of fish meals was 5.5 ± 1.6 items/g, with higher levels in China, Peru and Myanmar, which might be related to the high pollution level in fish and their habitats. In isolated MPs, fibers were the main shape type, and the most common size was 500-1000 μm. A total of 6 polymers were identified, with cellophane (CP), polypropylene (PP) and polyethylene teraphalate (PET) being the most common types. The total amount of MP ingestion from fish meals by different cultured animals was also estimated, with Atlantic salmon Salmon salar ingesting the largest number of MPs (9361 items), and red swamp crayfish Procambarus clarkii ingesting the smallest number of MPs (19 items). Thus, fish meal constitutes an important exposure route of MPs for aquaculture animals. The results of this study will provide a basis to assess the potential health risks of MPs in fish meals around the world.

Effective treatment of aquaculture wastewater with mussel/microalgae/bacteria complex ecosystem: a pilot study

The discharge of aquaculture wastewater increased significantly in China. Especially, high content of nitrogen and phosphorus in wastewater could destroy the receiving water environment. To reduce the pollution of aquaculture wastewater, farmed triangle sail mussel (Hyriopsis cumingii) was proposed to be cultivated in the river. This was the first time that bacteria (Bacillus subtilis and Bacillus licheniformis) and microalgae (Chlorella vulgaris) were also used and complemented ecosystem functions. The pollutants in wastewater were assimilated by Chlorella vulgaris biomass, which was then removed through continuous filter-feeding of Hyriopsis cumingii. While, Bacillus subtilis and Bacillus licheniformis enhanced the digestive enzyme activities of mussel. It demonstrated that approximately 4 mussels/m³ was the optimal breeding density. Under such condition, orthogonal experiment indicated that the dose of Bacillus subtilis, Bacillus licheniformis, and Chlorella vulgaris should be 0.5, 1, and 2 mL respectively. Compared with mussel, mussel/microalgae, mussel/bacteria system, treatment ability of the mussel/microalgae/bacteria system in batch experiment was better, and 94.67% of NH₃-N, 92.89% of TP and 77.78% of COD were reduced after reaction for 6 days. Finally, 90 thousand mussels per hectare of water were cultivated in Kulv river in China, and the field experiment showed that water quality was significantly improved. After about 35 days of operation, NH₃-N, TN, TP and COD concentration were maintained around 0.3, 0.8, 0.3, and 30 mg/L respectively. Therefore, the mussel/microalgae /bacteria system in this study showed a sustainable and efficient characteristic of aquaculture wastewater bioremediation.

Scenario analysis on optimal farmed-fish-species composition in China: A theoretical methodology to benefit wild-fishery stock, water conservation, economic and protein outputs under the context of climate change

Fish production from aquaculture and wild captures suffers from the rising risk of climate change. This impacts the livelihoods of fishers and fish farmers by shrinking wild fishery stocks, inland water scarcity, and consequent declines in economic and protein productions. China, feeding the most fish of the world with water-intensive crops, faces challenges of water scarcity but still be premature in developing strategies to adapt to climate change. Here, focusing on methodology development, we quantified the water footprint of fish-farming and economic and protein productions in the baseline year 2014. Then, 29 scenarios of farmed-fish-species composition (FFSC, i.e., tons of each farmed fish species) were developed for the target year 2020. The baseline 2014 shows that fish farming generates an average of 150 billion m³ of water footprint, 4.70 million tons of protein, and 263 billion RMB of economic output (~39 billion USD). Uncertainty optimizations were conducted to generate the optimal FFSC solutions that show a potential to increase fish production by 22%, economic and protein output by 18% and 29%, respectively and simultaneously lower water footprint by 22% to the maximum extent. Nine scenarios that lower wild fishery captures were further examined, with optimal FFSC solution that encourages aquaculture of Grass carp, Bighead Carp, and Silver Carp, and discourages Black carp, Tilapia, Crucian carp, Sea bass, and Wuchang bream. From a methodology aspect, this study pulls back policymakers from only focusing on the short-term economic interest of fish-farming and persuades them to rethink long-term adaptive strategies to climate change from multiple sustainable dimensions.

Evaluation of Multi-Source High-Resolution Remote Sensing Image Fusion in Aquaculture Areas

Image fusion of satellite sensors can generate a high-resolution multi-spectral image from inputs of a high spatial resolution panchromatic image and a low spatial resolution multi-spectral image for feature extraction and target recognition, such as enclosure seines and floating rafts. However, there is currently no clear and definite method of image fusion for different aquaculture areas distribution extraction from high-resolution satellite images. This study uses three types of high-resolution remote sensing images, GF-1 (Gaofen-1), GF-2 (Gaofen-2), and WV-2 (WorldView-2), covering the raft and enclosure seines aquacultures in the Xiangshan Bay, China, to evaluate panchromatic and multispectral image fusion techniques to determine which is the best. This study applied PCA (principal component analysis), GS (Gram–Schmidt), and NNDiffuse (nearest neighbor diffusion) algorithms to panchromatic and multispectral images fusion of GF-1, GF-2, and WV-2. Two quantitative methods are used to evaluate the fusion effect. The first used seven statistical parameters, including gray mean value, standard deviation, information entropy, average gradient, correlation coefficient, deviation index, and spectral distortion. The second is the CQmax index. Comparing the evaluation results by these seven common statistical indicators with the results of the image fusion evaluation by index CQmax, the results prove that the CQmax index can be applied to the evaluation of image fusion effects in different aquaculture areas. For the floating raft cultured area, the conclusion is consentaneous; NNDiffuse was also optimal for GF-1 and GF-2 data, and PCA was optimal for WV-2 data. For the enclosure seines culture area, the conclusion of quantitative evaluations is not consistent and it shows that there is no definite good method that can be applied to all areas; therefore, careful evaluation and selection of the best applicable image fusion method are required according to the study area and sensor images.

Genomic polymorphisms at the crhr2 locus improve feed conversion efficiency through alleviation of hypothalamus-pituitary-interrenal axis activity in gibel carp (Carassius gibelio)

Improvement in fish feed conversion efficiency (FCE) is beneficial for sustaining global food fish supplies. Here, we show that a set of polymorphisms at locus of the corticotropin releasing hormone receptor 2 (crhr2), which is involved in hypothalamus-pituitary-interrenal (HPI) axis signaling, is associated with improved FCE in farmed allogynogenetic gibel carp strain CAS III compared with that in the wild gibel carp strain Dongting (DT). This set of polymorphisms downregulates the expression levels of crhr2 mRNA in the brain and pituitary tissues in gibel carp strain CAS III compared with those in strain DT. Furthermore, compromised HPI axis signaling is observed in gibel carp strain CAS III, such as decreased α-melanocyte stimulating hormone protein levels, plasma cortisol content, and stress responses. Moreover, enhanced activation of protein kinase B/mammalian target of rapamycin complex 1 signaling observed in the muscle tissue of strain CAS III in comparison to that in strain DT indicated elevated anabolic metabolism in strain CAS III. Thus, these studies demonstrate that the genetic markers associated with compromised HPI axis signaling, such as crhr2, are potentially useful for genetic selection toward improvement in farmed fish growth and FCE, which would reduce fishmeal consumption and thereby indirectly facilitate sustainable fisheries.

China's little-known efforts to protect its marine ecosystems safeguard some habitats but omit others

China’s stature as the world’s major producer and consumer of seafood is legendary, but its long-standing tradition of protecting marine life domestically is virtually unknown. We present the most comprehensive database on area-based marine conservation in China including 326 sites that conserve 12.98% of China’s seas and address 142 conservation objectives. Twenty-two percent of shallow habitats (<10 meters) were fully or highly protected and 20% of waters 10 to 50 meters deep were conserved to some degree. Ecosystems in deeper waters (>50 meters) are critical to protect, yet <5% of these waters in China were conserved, primarily in areas with the highest chlorophyll-α concentrations. Habitats such as underwater canyons and seamounts beyond the continental shelf had no area-based protection. While China has made progress in marine protection within its boundaries, there is more work to be done to ensure that the full suite of marine life is safeguarded.