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Bohrmann G, Streuff K, Römer M, Knutsen SM, Smrzka D, Kleint J, Röhler A, Pape T, Sandstå NR, Kleint C, Hansen C, Dos Santos Ferreira C, Walter M, de Paula Santos GM, Bach W. Discovery of the first hydrothermal field along the 500-km-long Knipovich Ridge offshore Svalbard (the Jøtul field). Sci Rep 2024; 14:10168. [PMID: 38702385 PMCID: PMC11068752 DOI: 10.1038/s41598-024-60802-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/01/2024] [Accepted: 04/26/2024] [Indexed: 05/06/2024] Open
Abstract
Oceanic spreading centers north of Iceland are characterized by ultraslow spreading rates, and related hydrothermal activity has been detected in the water column and at the seafloor along nearly all ridge segments. An exception is the 500-km-long Knipovich Ridge, from where, until now, no hydrothermal vents were known. Here we report the investigation of the first hydrothermal vent field of the Knipovich Ridge, which was discovered in July 2022 during expedition MSM109. The newly discovered hydrothermal field, named Jøtul hydrothermal field, is associated with the eastern bounding fault of the rift valley rather than with an axial volcanic ridge. Guided by physico-chemical anomalies in the water column, ROV investigations on the seafloor showed a wide variety of fluid escape sites, inactive and active mounds with abundant hydrothermal precipitates, and chemosynthetic organisms. Fluids with temperatures between 8 and 316 °C as well as precipitates were sampled at four vent sites. High methane, carbon dioxide, and ammonium concentrations, as well as high 87Sr/86Sr isotope ratios of the vent fluids indicate strong interaction between magma and sediments from the Svalbard continental margin. Such interactions are important for carbon mobilization at the seafloor and the carbon cycle in the ocean.
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Affiliation(s)
- Gerhard Bohrmann
- MARUM - Center for Marine Environmental Sciences, University of Bremen, Leobener Straße 8, 28359, Bremen, Germany.
- Faculty of Geosciences, University of Bremen, Klagenfurter Straße 2-4, 28359, Bremen, Germany.
| | - Katharina Streuff
- Faculty of Geosciences, University of Bremen, Klagenfurter Straße 2-4, 28359, Bremen, Germany
| | - Miriam Römer
- MARUM - Center for Marine Environmental Sciences, University of Bremen, Leobener Straße 8, 28359, Bremen, Germany
- Faculty of Geosciences, University of Bremen, Klagenfurter Straße 2-4, 28359, Bremen, Germany
| | - Stig-Morten Knutsen
- Norwegian Offshore Directorate (NOD), Professor Olav Hanssens vei 10, 4021, Stavanger, Norway
| | - Daniel Smrzka
- Faculty of Geosciences, University of Bremen, Klagenfurter Straße 2-4, 28359, Bremen, Germany
| | - Jan Kleint
- MARUM - Center for Marine Environmental Sciences, University of Bremen, Leobener Straße 8, 28359, Bremen, Germany
| | - Aaron Röhler
- MARUM - Center for Marine Environmental Sciences, University of Bremen, Leobener Straße 8, 28359, Bremen, Germany
- Faculty of Geosciences, University of Bremen, Klagenfurter Straße 2-4, 28359, Bremen, Germany
| | - Thomas Pape
- MARUM - Center for Marine Environmental Sciences, University of Bremen, Leobener Straße 8, 28359, Bremen, Germany
- Faculty of Geosciences, University of Bremen, Klagenfurter Straße 2-4, 28359, Bremen, Germany
| | - Nils Rune Sandstå
- Norwegian Offshore Directorate (NOD), Professor Olav Hanssens vei 10, 4021, Stavanger, Norway
| | - Charlotte Kleint
- MARUM - Center for Marine Environmental Sciences, University of Bremen, Leobener Straße 8, 28359, Bremen, Germany
- Faculty of Geosciences, University of Bremen, Klagenfurter Straße 2-4, 28359, Bremen, Germany
| | - Christian Hansen
- Faculty of Geosciences, University of Bremen, Klagenfurter Straße 2-4, 28359, Bremen, Germany
| | - Christian Dos Santos Ferreira
- MARUM - Center for Marine Environmental Sciences, University of Bremen, Leobener Straße 8, 28359, Bremen, Germany
- Faculty of Geosciences, University of Bremen, Klagenfurter Straße 2-4, 28359, Bremen, Germany
| | - Maren Walter
- MARUM - Center for Marine Environmental Sciences, University of Bremen, Leobener Straße 8, 28359, Bremen, Germany
- Institute of Environmental Physics, University of Bremen, Otto-Hahn-Allee 1, 28359, Bremen, Germany
| | - Gustavo Macedo de Paula Santos
- MARUM - Center for Marine Environmental Sciences, University of Bremen, Leobener Straße 8, 28359, Bremen, Germany
- Faculty of Geosciences, University of Bremen, Klagenfurter Straße 2-4, 28359, Bremen, Germany
| | - Wolfgang Bach
- MARUM - Center for Marine Environmental Sciences, University of Bremen, Leobener Straße 8, 28359, Bremen, Germany
- Faculty of Geosciences, University of Bremen, Klagenfurter Straße 2-4, 28359, Bremen, Germany
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2
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Robayo-Amortegui H, Quintero-Altare A, Florez-Navas C, Serna-Palacios I, Súarez-Saavedra A, Buitrago-Bernal R, Casallas-Barrera JO. Fluid dynamics of life: exploring the physiology and importance of water in the critical illness. Front Med (Lausanne) 2024; 11:1368502. [PMID: 38745736 PMCID: PMC11092983 DOI: 10.3389/fmed.2024.1368502] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/12/2024] [Accepted: 04/12/2024] [Indexed: 05/16/2024] Open
Abstract
Water acknowledged as a vital component for life and the universal solvent, is crucial for diverse physiological processes in the human body. While essential for survival, the human body lacks the capacity to produce water, emphasizing the need for regular ingestion to maintain a homeostatic environment. The human body, predominantly composed of water, exhibits remarkable biochemical properties, playing a pivotal role in processes such as protein transport, thermoregulation, the cell cycle, and acid–base balance. This review delves into comprehending the molecular characteristics of water and its interactions within the human body. The article offers valuable insights into the intricate relationship between water and critical illness. Through a comprehensive exploration, it seeks to enhance our understanding of water’s pivotal role in sustaining overall human health.
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Affiliation(s)
- Henry Robayo-Amortegui
- Department of Critical Care Medicine, Fundación Clínica Shaio, Bogotá, DC, Colombia
- Department of Medicine, Critical Care Resident, Universidad de La Sabana, Chía Cundinamarca, Colombia
| | - Alejandro Quintero-Altare
- Department of Critical Care Medicine, Fundación Clínica Shaio, Bogotá, DC, Colombia
- Department of Medicine, Critical Care Resident, Universidad de La Sabana, Chía Cundinamarca, Colombia
| | - Catalina Florez-Navas
- Department of Critical Care Medicine, Fundación Clínica Shaio, Bogotá, DC, Colombia
- Department of Medicine, Critical Care Resident, Universidad de La Sabana, Chía Cundinamarca, Colombia
| | - Isacio Serna-Palacios
- Department of Medicine, Critical Care Resident, Universidad de La Sabana, Chía Cundinamarca, Colombia
| | | | - Ricardo Buitrago-Bernal
- Department of Critical Care Medicine, Fundación Clínica Shaio, Bogotá, DC, Colombia
- Exploratorium group, Fundación Clínica Shaio, Bogotá, DC, Colombia
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3
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Martín-Díaz JP, González-Vega A, Barreyre T, Cornide B, Arrieta JM, Vázquez JT, Palomino D, Lozano Rodríguez JA, Escánez-Pérez J, Presas-Navarro C, Fraile-Nuez E. Unveiling the inherent physical-chemical dynamics: Direct measurements of hydrothermal fluid flow, heat, and nutrient outflow at the Tagoro submarine volcano (Canary Islands, Spain). THE SCIENCE OF THE TOTAL ENVIRONMENT 2024; 918:170565. [PMID: 38331280 DOI: 10.1016/j.scitotenv.2024.170565] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/21/2023] [Revised: 01/12/2024] [Accepted: 01/28/2024] [Indexed: 02/10/2024]
Abstract
Tagoro is one of the few submarine volcanoes in the world that has been monitored since its early eruptive stage in 2011 to present day. After six multidisciplinary oceanographic cruises conducted between 2014 and 2023 to gather a comprehensive dataset of georeferenced video-imagery and in situ measurements of hydrothermal flow velocities and hydrothermal fluid samples, we provide a robust characterization of the ongoing hydrothermal fluid velocity, heat flux, and nutrient release, along with an accurate delimitation of the hydrothermal field area. Our results reveal that Tagoro hydrothermal system extends from the main hydrothermal crater up to the summit, covering an area of 7600 m2. This hydrothermal field comprises thousands of small individual vents, displaying diverse morphologies such as crevices and delicate chimney-like structures, irregularly scattered across the dominant diffuse venting surface. Hydrothermal fluid temperatures and velocities at the substratum level reveal a clustered spatial distribution, ranging from 21.0 to 33.3 °C and 1.6-26.8 cm min-1, respectively. Furthermore, our findings indicate a discernible correlation between hydrothermal fluid temperature and vent density, while significant differences were observed between velocities from diffuse and focused areas. Additionally, heat fluxes exceed 200 MW across the entire active region, with heat flux values ranging from 6.06 to 146.87 kW m-2 and dissolve inorganic nutrient concentrations exhibit significant enrichments, comparable to the magnitude of important nutrient sources in the area as upwelling systems or mesoscale structures.
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Affiliation(s)
- Juan Pablo Martín-Díaz
- Centro Oceanográfico de Canarias, Instituto Español de Oceanografía, Consejo Superior de Investigaciones Científicas (IEO-CSIC), 38180 Santa Cruz de Tenerife, Spain; Universidad de La Laguna (ULL), 38200 San Cristóbal de La Laguna, Spain
| | - Alba González-Vega
- Centro Oceanográfico de Canarias, Instituto Español de Oceanografía, Consejo Superior de Investigaciones Científicas (IEO-CSIC), 38180 Santa Cruz de Tenerife, Spain
| | | | | | - Jesús M Arrieta
- Centro Oceanográfico de Canarias, Instituto Español de Oceanografía, Consejo Superior de Investigaciones Científicas (IEO-CSIC), 38180 Santa Cruz de Tenerife, Spain
| | - Juan-Tomás Vázquez
- Centro Oceanográfico de Málaga, Instituto Español de Oceanografía, Consejo Superior de Investigaciones Científicas (IEO-CSIC), 29002 Málaga, Spain
| | - Desirée Palomino
- Centro Oceanográfico de Málaga, Instituto Español de Oceanografía, Consejo Superior de Investigaciones Científicas (IEO-CSIC), 29002 Málaga, Spain
| | - José A Lozano Rodríguez
- Centro Oceanográfico de Canarias, Instituto Español de Oceanografía, Consejo Superior de Investigaciones Científicas (IEO-CSIC), 38180 Santa Cruz de Tenerife, Spain
| | - José Escánez-Pérez
- Centro Oceanográfico de Canarias, Instituto Español de Oceanografía, Consejo Superior de Investigaciones Científicas (IEO-CSIC), 38180 Santa Cruz de Tenerife, Spain
| | - Carmen Presas-Navarro
- Centro Oceanográfico de Canarias, Instituto Español de Oceanografía, Consejo Superior de Investigaciones Científicas (IEO-CSIC), 38180 Santa Cruz de Tenerife, Spain
| | - Eugenio Fraile-Nuez
- Centro Oceanográfico de Canarias, Instituto Español de Oceanografía, Consejo Superior de Investigaciones Científicas (IEO-CSIC), 38180 Santa Cruz de Tenerife, Spain.
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4
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Xu J, Zhao R, Liu A, Li L, Li S, Li Y, Qu M, Di Y. To live or die: "Fine-tuning" adaptation revealed by systemic analyses in symbiotic bathymodiolin mussels from diverse deep-sea extreme ecosystems. THE SCIENCE OF THE TOTAL ENVIRONMENT 2024; 917:170434. [PMID: 38278266 DOI: 10.1016/j.scitotenv.2024.170434] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/16/2023] [Revised: 01/21/2024] [Accepted: 01/23/2024] [Indexed: 01/28/2024]
Abstract
Hydrothermal vents (HVs) and cold seeps (CSs) are typical deep-sea extreme ecosystems with their own geochemical characteristics to supply the unique living conditions for local communities. Once HVs or CSs stop emission, the dramatic environmental change would pose survival risks to deep-sea organisms. Up to now, limited knowledge has been available to understand the biological responses and adaptive strategy to the extreme environments and their transition from active to extinct stage, mainly due to the technical difficulties and lack of representative organisms. In this study, bathymodiolin mussels, the dominant and successful species surviving in diverse deep-sea extreme ecosystems, were collected from active and extinct HVs (Southwest Indian Ocean) or CSs (South China Sea) via two individual cruises. The transcriptomic analysis and determination of multiple biological indexes in stress defense and metabolic systems were conducted in both gills and digestive glands of mussels, together with the metagenomic analysis of symbionts in mussels. The results revealed the ecosystem- and tissue-specific transcriptional regulation in mussels, addressing the autologous adaptations in antioxidant defense, energy utilization and key compounds (i.e. sulfur) metabolism. In detail, the successful antioxidant defense contributed to conquering the oxidative stress induced during the unavoidable metabolism of xenobiotics commonly existing in the extreme ecosystems; changes in metabolic rate functioned to handle toxic matters in different surroundings; upregulated gene expression of sulfide:quinone oxidoreductase indicated an active sulfide detoxification in mussels from HVs and active stage of HVs & CSs. Coordinately, a heterologous adaptation, characterized by the functional compensation between symbionts and mussels in energy utilization, sulfur and carbon metabolism, was also evidenced by the bacterial metagenomic analysis. Taken together, a new insight was proposed that symbiotic bathymodiolin mussels would develop a "finetuning" strategy combining the autologous and heterologous regulations to fulfill the efficient and effective adaptations for successful survival.
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Affiliation(s)
- Jianzhou Xu
- Ocean College, Zhejiang University, Zhoushan 316000, China; Hainan Institute of Zhejiang University, Sanya 572024, China
| | - Ruoxuan Zhao
- Ocean College, Zhejiang University, Zhoushan 316000, China
| | - Ao Liu
- Ocean College, Zhejiang University, Zhoushan 316000, China
| | - Liya Li
- Ocean College, Zhejiang University, Zhoushan 316000, China; Hainan Institute of Zhejiang University, Sanya 572024, China
| | - Shuimei Li
- Ocean College, Zhejiang University, Zhoushan 316000, China
| | - Yichen Li
- Ocean College, Zhejiang University, Zhoushan 316000, China
| | - Mengjie Qu
- Ocean College, Zhejiang University, Zhoushan 316000, China; Hainan Institute of Zhejiang University, Sanya 572024, China
| | - Yanan Di
- Ocean College, Zhejiang University, Zhoushan 316000, China; Hainan Institute of Zhejiang University, Sanya 572024, China.
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5
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McNichol J. Mineral-eating microorganisms at extinct hydrothermal vents. Nat Microbiol 2024; 9:589-590. [PMID: 38429423 DOI: 10.1038/s41564-024-01622-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/03/2024]
Affiliation(s)
- Jesse McNichol
- Department of Biology, St Francis Xavier University, Antigonish, Nova Scotia, Canada.
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6
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Achberger AM, Jones R, Jamieson J, Holmes CP, Schubotz F, Meyer NR, Dekas AE, Moriarty S, Reeves EP, Manthey A, Brünjes J, Fornari DJ, Tivey MK, Toner BM, Sylvan JB. Inactive hydrothermal vent microbial communities are important contributors to deep ocean primary productivity. Nat Microbiol 2024; 9:657-668. [PMID: 38287146 DOI: 10.1038/s41564-024-01599-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/19/2023] [Accepted: 12/20/2023] [Indexed: 01/31/2024]
Abstract
Active hydrothermal vents are oases for productivity in the deep ocean, but the flow of dissolved substrates that fuel such abundant life ultimately ceases, leaving behind inactive mineral deposits. The rates of microbial activity on these deposits are largely unconstrained. Here we show primary production occurs on inactive hydrothermal deposits and quantify its contribution to new organic carbon production in the deep ocean. Measured incorporation of 14C-bicarbonate shows that microbial communities on inactive deposits fix inorganic carbon at rates comparable to those on actively venting deposits. Single-cell uptake experiments and nanoscale secondary ion mass spectrometry showed chemoautotrophs comprise a large fraction (>30%) of the active microbial cells. Metagenomic and lipidomic surveys of inactive deposits further revealed that the microbial communities are dominated by Alphaproteobacteria and Gammaproteobacteria using the Calvin-Benson-Bassham pathway for carbon fixation. These findings establish inactive vent deposits as important sites for microbial activity and organic carbon production on the seafloor.
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Affiliation(s)
- Amanda M Achberger
- Department of Oceanography, Texas A&M University, College Station, Texas, USA.
| | - Rose Jones
- Department of Soil, Water and Climate, University of Minnesota-Twin Cities, St Paul, MN, USA
| | - John Jamieson
- Department of Earth Sciences, Memorial University of Newfoundland, St John's, Newfoundland and Labrador, Canada
| | - Charles P Holmes
- Department of Oceanography, Texas A&M University, College Station, Texas, USA
| | - Florence Schubotz
- MARUM Center for Marine Environmental Sciences, University of Bremen, Bremen, Germany
| | - Nicolette R Meyer
- Department of Earth System Science, Stanford University, Stanford, CA, USA
| | - Anne E Dekas
- Department of Earth System Science, Stanford University, Stanford, CA, USA
| | - Sarah Moriarty
- Department of Earth Sciences, Memorial University of Newfoundland, St John's, Newfoundland and Labrador, Canada
| | - Eoghan P Reeves
- Department of Earth Science, Centre for Deep Sea Research, University of Bergen, Bergen, Norway
| | - Alex Manthey
- MARUM Center for Marine Environmental Sciences, University of Bremen, Bremen, Germany
| | - Jonas Brünjes
- MARUM Center for Marine Environmental Sciences, University of Bremen, Bremen, Germany
- Department of Earth Sciences, University of Toronto, Toronto, Ontario, Canada
| | - Daniel J Fornari
- Department of Geology and Geophysics, Woods Hole Oceanographic Institution, Woods Hole, MA, USA
| | - Margaret K Tivey
- Department of Marine Chemistry and Geochemistry, Woods Hole Oceanographic Institution, Woods Hole, MA, USA
| | - Brandy M Toner
- Department of Soil, Water and Climate, University of Minnesota-Twin Cities, St Paul, MN, USA
| | - Jason B Sylvan
- Department of Oceanography, Texas A&M University, College Station, Texas, USA.
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7
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Chen C, Jamieson JW, Tunnicliffe V. Hydrothermal vent fauna of the Galápagos Rift: updated species list with new records. MARINE BIODIVERSITY : A JOURNAL OF THE SENCKENBERG RESEARCH INSTITUTE 2024; 54:16. [PMID: 38371229 PMCID: PMC10869388 DOI: 10.1007/s12526-024-01408-w] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 11/29/2023] [Revised: 01/09/2024] [Accepted: 01/18/2024] [Indexed: 02/20/2024]
Abstract
The sighting of giant bivalves and tubeworms at the Rose Garden vent field on the Galápagos Rift in 1977 marked the discovery of hydrothermal vents, a turning point for modern biology. The following decade saw a flurry of taxonomic descriptions of vent endemic species from the first vents. With the finding of high-temperature "black smokers" on the East Pacific Rise, exploration shifted away from Galápagos. A faunal list of Galápagos vents with 65 species was published in 1991, then updated to 74 species in 2006. Since then, few expeditions returned to the Galápagos Rift. Here, we revisited several Galápagos vents including recently confirmed high-temperature sites and inactive sulfide mounds. From our collecting efforts and observations, as well as revisions from the literature, we update the faunal list to 92 species including 15 new records, restricted to obvious vent associates. Accurate regional faunal lists are important for understanding the biogeography of vent fauna, and our list will also be valuable for setting management strategies.
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Affiliation(s)
- Chong Chen
- X-STAR, Japan Agency for Marine-Earth Science and Technology (JAMSTEC), 2-15 Natsushima-cho, Yokosuka, Kanagawa 237-0061 Japan
| | - John W. Jamieson
- Department of Earth Sciences, Memorial University of Newfoundland, St. John’s, Newfoundland A1B 3X5 Canada
| | - Verena Tunnicliffe
- Department of Biology and School of Earth/Ocean Sciences, University of Victoria, Victoria, British Columbia V8P 3E6 Canada
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8
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Brunk CF, Marshall CR. Opinion: The Key Steps in the Origin of Life to the Formation of the Eukaryotic Cell. Life (Basel) 2024; 14:226. [PMID: 38398735 PMCID: PMC10890422 DOI: 10.3390/life14020226] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/02/2023] [Revised: 01/16/2024] [Accepted: 01/29/2024] [Indexed: 02/25/2024] Open
Abstract
The path from life's origin to the emergence of the eukaryotic cell was long and complex, and as such it is rarely treated in one publication. Here, we offer a sketch of this path, recognizing that there are points of disagreement and that many transitions are still shrouded in mystery. We assume life developed within microchambers of an alkaline hydrothermal vent system. Initial simple reactions were built into more sophisticated reflexively autocatalytic food-generated networks (RAFs), laying the foundation for life's anastomosing metabolism, and eventually for the origin of RNA, which functioned as a genetic repository and as a catalyst (ribozymes). Eventually, protein synthesis developed, leading to life's biology becoming dominated by enzymes and not ribozymes. Subsequent enzymatic innovation included ATP synthase, which generates ATP, fueled by the proton gradient between the alkaline vent flux and the acidic sea. This gradient was later internalized via the evolution of the electron transport chain, a preadaptation for the subsequent emergence of the vent creatures from their microchamber cradles. Differences between bacteria and archaea suggests cellularization evolved at least twice. Later, the bacterial development of oxidative phosphorylation and the archaeal development of proteins to stabilize its DNA laid the foundation for the merger that led to the formation of eukaryotic cells.
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Affiliation(s)
- Clifford F. Brunk
- Department of Ecology and Evolutionary Biology, University of California Los Angeles, Los Angeles, CA 90095-1606, USA
| | - Charles R. Marshall
- Department of Integrative Biology and Museum of Paleontology, University of California, Berkeley, CA 94720-4780, USA
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9
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Knoll P, Ouyang B, Steinbock O. Patterns Lead the Way to Far-from-Equilibrium Materials. ACS PHYSICAL CHEMISTRY AU 2024; 4:19-30. [PMID: 38283788 PMCID: PMC10811769 DOI: 10.1021/acsphyschemau.3c00050] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 09/04/2023] [Revised: 10/14/2023] [Accepted: 10/19/2023] [Indexed: 01/30/2024]
Abstract
The universe is a complex fabric of repeating patterns that unfold their beauty in system-specific diversity. The periodic table, crystallography, and the genetic code are classic examples that illustrate how even a small number of rules generate a vast range of shapes and structures. Today, we are on the brink of an AI-driven revolution that will reveal an unprecedented number of novel patterns, many of which will escape human intuition and expertise. We suggest that in the second half of the 21st century, the challenge for Physical Chemistry will be to guide and interpret these advances in the broader context of physical sciences and materials-related engineering. If we succeed in this role, Physical Chemistry will be able to extend to new horizons. In this article, we will discuss examples that strike us as particularly promising, specifically the discovery of high-entropy and far-from-equilibrium materials as well as applications to origins-of-life research and the search for life on other planets.
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Affiliation(s)
- Pamela Knoll
- School
of Physics and Astronomy, Institute for Condensed Matter and Complex
Systems, University of Edinburgh, Edinburgh EH9 3FD, U.K.
| | - Bin Ouyang
- Department
of Chemistry and Biochemistry, Florida State
University, Tallahassee, Florida 32306-4390, United States
| | - Oliver Steinbock
- Department
of Chemistry and Biochemistry, Florida State
University, Tallahassee, Florida 32306-4390, United States
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10
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Alfaro-Lucas JM, Martin D, Michel LN, Laes A, Cathalot C, Fuchs S, Sarrazin J. Fluid chemistry alters faunal trophodynamics but not composition on the deep-sea Capelinhos hydrothermal edifice (Lucky Strike vent field, Mid-Atlantic Ridge). Sci Rep 2024; 14:1940. [PMID: 38253666 PMCID: PMC10803789 DOI: 10.1038/s41598-024-52186-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/17/2023] [Accepted: 01/15/2024] [Indexed: 01/24/2024] Open
Abstract
The recently discovered deep-sea Capelinhos hydrothermal edifice, ~ 1.5 km of the main Lucky Strike (LS) vent field (northern Mid-Atlantic Ridge), contrasts with the other LS edifices in having poorly-altered end-member hydrothermal fluids with low pH and chlorine, and high metal concentrations. Capelinhos unique chemistry and location offer the opportunity to test the effects of local abiotic filters on faunal community structure while avoiding the often-correlated influence of dispersal limitation and depth. In this paper, we characterize for the first time the distribution patterns of the Capelinhos faunal communities, and analyze the benthic invertebrates (> 250 µm) inhabiting diffusive-flow areas and their trophic structures (δ13C, δ15N and δ34S). We hypothesized that faunal communities would differ from those of the nearest LS vent edifices, showing an impoverished species subset due to the potential toxicity of the chemical environment. Conversely, our results show that: (1) community distribution resembles that of other LS edifices, with assemblages visually dominated by shrimps (close to high-temperature focused-fluid areas) and mussels (at low-temperature diffuse flow areas); (2) most species from diffuse flow areas are well-known LS inhabitants, including the bed-forming and chemosymbiotic mussel Bathymodiolus azoricus and (3) communities are as diverse as those of the most diverse LS edifices. On the contrary, stable isotopes suggest different trophodynamics at Capelinhos. The high δ15N and, especially, δ13C and δ34S values suggest an important role of methane oxidation (i.e., methanotrophy), rather than the sulfide oxidation (i.e., thiotrophy) that predominates at most LS edifices. Our results indicate that Capelinhos shows unique environmental conditions, trophic structure and trophodynamics, yet similar fauna, compared to other LS edifices, which suggest a great environmental and trophic plasticity of the vent faunal communities at the LS.
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Affiliation(s)
- Joan M Alfaro-Lucas
- Univ Brest, Ifremer, CNRS, Unité BEEP, 29280, Plouzané, France.
- Department of Biology, University of Victoria, Victoria, BC, Canada.
| | - Daniel Martin
- Centre d'Estudis Avançats de Blanes (CEAB-CSIC), Blanes, Catalonia, Spain
| | - Loïc N Michel
- Univ Brest, Ifremer, CNRS, Unité BEEP, 29280, Plouzané, France
- Université de Liège, Liège, Belgium
| | - Agathe Laes
- Univ Brest, Ifremer, CNRS, Unité BEEP, 29280, Plouzané, France
| | - Cécile Cathalot
- Univ Brest, Ifremer, CNRS, Unité BEEP, 29280, Plouzané, France
| | - Sandra Fuchs
- Univ Brest, Ifremer, CNRS, Unité BEEP, 29280, Plouzané, France
| | - Jozée Sarrazin
- Univ Brest, Ifremer, CNRS, Unité BEEP, 29280, Plouzané, France
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He Z, Lou Y, Zhang H, Han X, Pähtz T, Jiao P, Hu P, Zhou Y, Wang Y, Qiu Z. The role of hydrodynamics for the spatial distribution of high-temperature hydrothermal vent-endemic fauna in the deep ocean environment. THE SCIENCE OF THE TOTAL ENVIRONMENT 2023; 904:166714. [PMID: 37659550 DOI: 10.1016/j.scitotenv.2023.166714] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/23/2023] [Revised: 08/18/2023] [Accepted: 08/29/2023] [Indexed: 09/04/2023]
Abstract
Active hydrothermal vents provide the surrounding submarine environment with substantial amounts of matter and energy, thus serving as important habitats for diverse megabenthic communities in the deep ocean and constituting a unique, highly productive chemosynthetic ecosystem on Earth. Vent-endemic biological communities gather near the venting site and are usually not found beyond a distance of the order of 100 m from the vent. This is surprising because one would actually expect matter ejected from high-temperature vents, which generate highly turbulent buoyancy plumes, to be suspended and carried far away by the plume flows and deep-sea currents. Here, we study this problem from a fluid dynamics perspective by simulating the vent hydrodynamics using a numerical model that couples the plume flow with induced matter and energy transport. We find that both low- and high-temperature vents deposit most vent matter relatively close to the plume. In particular, the tendency of turbulent buoyancy plumes to carry matter far away is strongly counteracted by generated entrainment flows back into the plume stem. The deposition ranges of organic and inorganic hydrothermal particles obtained from the simulations for various natural high-temperature vents are consistent with the observed maximum spatial extent of biological communities, evidencing that plume hydrodynamics exercises strong control over the spatial distribution of vent-endemic fauna. While other factors affecting the spatial distribution of vent-endemic fauna, such as geology and geochemistry, are site-specific, the main physical features of plume hydrodynamics unraveled in this study are largely site-unspecific and therefore universal across vent sites on Earth.
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Affiliation(s)
- Zhiguo He
- Ocean College & Engineering Research Center of Oceanic Sensing Technology and Equipment of Ministry of Education, Zhejiang University, Zhoushan 316021, China; Hainan Institution, Zhejiang University, Sanya 572000, China.
| | - Yingzhong Lou
- Ocean College & Engineering Research Center of Oceanic Sensing Technology and Equipment of Ministry of Education, Zhejiang University, Zhoushan 316021, China; Department of Civil and Environmental Engineering, University of Washington, Seattle, WA 98195, USA
| | - Haoyang Zhang
- Ocean College & Engineering Research Center of Oceanic Sensing Technology and Equipment of Ministry of Education, Zhejiang University, Zhoushan 316021, China
| | - Xiqiu Han
- Ocean College & Engineering Research Center of Oceanic Sensing Technology and Equipment of Ministry of Education, Zhejiang University, Zhoushan 316021, China; Key Laboratory of Submarine Geosciences & Second Institute of Oceanography, Ministry of Natural Resources, Hangzhou 310012, China
| | - Thomas Pähtz
- Ocean College & Engineering Research Center of Oceanic Sensing Technology and Equipment of Ministry of Education, Zhejiang University, Zhoushan 316021, China.
| | - Pengcheng Jiao
- Ocean College & Engineering Research Center of Oceanic Sensing Technology and Equipment of Ministry of Education, Zhejiang University, Zhoushan 316021, China; Hainan Institution, Zhejiang University, Sanya 572000, China
| | - Peng Hu
- Ocean College & Engineering Research Center of Oceanic Sensing Technology and Equipment of Ministry of Education, Zhejiang University, Zhoushan 316021, China
| | - Yadong Zhou
- Key Laboratory of Submarine Geosciences & Second Institute of Oceanography, Ministry of Natural Resources, Hangzhou 310012, China
| | - Yejian Wang
- Key Laboratory of Submarine Geosciences & Second Institute of Oceanography, Ministry of Natural Resources, Hangzhou 310012, China
| | - Zhongyan Qiu
- Key Laboratory of Submarine Geosciences & Second Institute of Oceanography, Ministry of Natural Resources, Hangzhou 310012, China
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12
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Deng W, Zhao Z, Li Y, Cao R, Chen M, Tang K, Wang D, Fan W, Hu A, Chen G, Chen CTA, Zhang Y. Strategies of chemolithoautotrophs adapting to high temperature and extremely acidic conditions in a shallow hydrothermal ecosystem. MICROBIOME 2023; 11:270. [PMID: 38049915 PMCID: PMC10696704 DOI: 10.1186/s40168-023-01712-w] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/24/2023] [Accepted: 10/27/2023] [Indexed: 12/06/2023]
Abstract
BACKGROUND Active hydrothermal vents create extreme conditions characterized by high temperatures, low pH levels, and elevated concentrations of heavy metals and other trace elements. These conditions support unique ecosystems where chemolithoautotrophs serve as primary producers. The steep temperature and pH gradients from the vent mouth to its periphery provide a wide range of microhabitats for these specialized microorganisms. However, their metabolic functions, adaptations in response to these gradients, and coping mechanisms under extreme conditions remain areas of limited knowledge. In this study, we conducted temperature gradient incubations of hydrothermal fluids from moderate (pH = 5.6) and extremely (pH = 2.2) acidic vents. Combining the DNA-stable isotope probing technique and subsequent metagenomics, we identified active chemolithoautotrophs under different temperature and pH conditions and analyzed their specific metabolic mechanisms. RESULTS We found that the carbon fixation activities of Nautiliales in vent fluids were significantly increased from 45 to 65 °C under moderately acidic condition, while their heat tolerance was reduced under extremely acidic conditions. In contrast, Campylobacterales actively fixed carbon under both moderately and extremely acidic conditions under 30 - 45 °C. Compared to Campylobacterales, Nautiliales were found to lack the Sox sulfur oxidation system and instead use NAD(H)-linked glutamate dehydrogenase to boost the reverse tricarboxylic acid (rTCA) cycle. Additionally, they exhibit a high genetic potential for high activity of cytochrome bd ubiquinol oxidase in oxygen respiration and hydrogen oxidation at high temperatures. In terms of high-temperature adaption, the rgy gene plays a critical role in Nautiliales by maintaining DNA stability at high temperature. Genes encoding proteins involved in proton export, including the membrane arm subunits of proton-pumping NADH: ubiquinone oxidoreductase, K+ accumulation, selective transport of charged molecules, permease regulation, and formation of the permeability barrier of bacterial outer membranes, play essential roles in enabling Campylobacterales to adapt to extremely acidic conditions. CONCLUSIONS Our study provides in-depth insights into how high temperature and low pH impact the metabolic processes of energy and main elements in chemolithoautotrophs living in hydrothermal ecosystems, as well as the mechanisms they use to adapt to the extreme hydrothermal conditions. Video Abstract.
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Affiliation(s)
- Wenchao Deng
- State Key Laboratory of Marine Environmental Sciences, Xiamen University, Xiamen, 361101, China.
- Key Laboratory of Marine Ecological Conservation and Restoration, Third Institute of Oceanography, Ministry of Natural Resources, Xiamen, 361005, China.
| | - Zihao Zhao
- Department of Functional and Evolutionary Ecology, Bio-Oceanography and Marine Biology Unit, University of Vienna, Djerassiplatz 1, 1030, Vienna, Austria
| | - Yufang Li
- Fisheries College, Jimei University, Xiamen, 361021, China
| | - Rongguang Cao
- State Key Laboratory of Marine Environmental Sciences, Xiamen University, Xiamen, 361101, China
| | - Mingming Chen
- State Key Laboratory of Marine Environmental Sciences, Xiamen University, Xiamen, 361101, China
| | - Kai Tang
- State Key Laboratory of Marine Environmental Sciences, Xiamen University, Xiamen, 361101, China
| | - Deli Wang
- State Key Laboratory of Marine Environmental Sciences, Xiamen University, Xiamen, 361101, China
| | - Wei Fan
- Ocean College, Zhejiang University, Zhoushan, 316000, China
| | - Anyi Hu
- CAS Key Laboratory of Urban Pollutant Conversion, Institute of Urban Environment, Chinese Academy of Sciences, Xiamen, 361021, China
| | - Guangcheng Chen
- Key Laboratory of Marine Ecological Conservation and Restoration, Third Institute of Oceanography, Ministry of Natural Resources, Xiamen, 361005, China
| | - Chen-Tung Arthur Chen
- Department of Oceanography, National Sun Yat-Sen University, Kaohsiung Taiwan, China
| | - Yao Zhang
- State Key Laboratory of Marine Environmental Sciences, Xiamen University, Xiamen, 361101, China.
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13
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Mrnjavac N, Wimmer JLE, Brabender M, Schwander L, Martin WF. The Moon-Forming Impact and the Autotrophic Origin of Life. Chempluschem 2023; 88:e202300270. [PMID: 37812146 PMCID: PMC7615287 DOI: 10.1002/cplu.202300270] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/05/2023] [Revised: 09/29/2023] [Accepted: 10/03/2023] [Indexed: 10/10/2023]
Abstract
The Moon-forming impact vaporized part of Earth's mantle, and turned the rest into a magma ocean, from which carbon dioxide degassed into the atmosphere, where it stayed until water rained out to form the oceans. The rain dissolved CO2 and made it available to react with transition metal catalysts in the Earth's crust so as to ultimately generate the organic compounds that form the backbone of microbial metabolism. The Moon-forming impact was key in building a planet with the capacity to generate life in that it converted carbon on Earth into a homogeneous and accessible substrate for organic synthesis. Today all ecosystems, without exception, depend upon primary producers, organisms that fix CO2 . According to theories of autotrophic origin, it has always been that way, because autotrophic theories posit that the first forms of life generated all the molecules needed to build a cell from CO2 , forging a direct line of continuity between Earth's initial CO2 -rich atmosphere and the first microorganisms. By modern accounts these were chemolithoautotrophic archaea and bacteria that initially colonized the crust and still inhabit that environment today.
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Affiliation(s)
- Natalia Mrnjavac
- Department of Biology Institute for Molecular Evolution Heinrich Heine University Duesseldorf Universitaetsstr. 1, 40225 Düsseldorf (Germany)
| | - Jessica L. E. Wimmer
- Department of Biology Institute for Molecular Evolution Heinrich Heine University Duesseldorf Universitaetsstr. 1, 40225 Düsseldorf (Germany)
| | - Max Brabender
- Department of Biology Institute for Molecular Evolution Heinrich Heine University Duesseldorf Universitaetsstr. 1, 40225 Düsseldorf (Germany)
| | - Loraine Schwander
- Department of Biology Institute for Molecular Evolution Heinrich Heine University Duesseldorf Universitaetsstr. 1, 40225 Düsseldorf (Germany)
| | - William F. Martin
- Department of Biology Institute for Molecular Evolution Heinrich Heine University Duesseldorf Universitaetsstr. 1, 40225 Düsseldorf (Germany)
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14
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Schwander L, Brabender M, Mrnjavac N, Wimmer JLE, Preiner M, Martin WF. Serpentinization as the source of energy, electrons, organics, catalysts, nutrients and pH gradients for the origin of LUCA and life. Front Microbiol 2023; 14:1257597. [PMID: 37854333 PMCID: PMC10581274 DOI: 10.3389/fmicb.2023.1257597] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/12/2023] [Accepted: 09/04/2023] [Indexed: 10/20/2023] Open
Abstract
Serpentinization in hydrothermal vents is central to some autotrophic theories for the origin of life because it generates compartments, reductants, catalysts and gradients. During the process of serpentinization, water circulates through hydrothermal systems in the crust where it oxidizes Fe (II) in ultramafic minerals to generate Fe (III) minerals and H2. Molecular hydrogen can, in turn, serve as a freely diffusible source of electrons for the reduction of CO2 to organic compounds, provided that suitable catalysts are present. Using catalysts that are naturally synthesized in hydrothermal vents during serpentinization H2 reduces CO2 to formate, acetate, pyruvate, and methane. These compounds represent the backbone of microbial carbon and energy metabolism in acetogens and methanogens, strictly anaerobic chemolithoautotrophs that use the acetyl-CoA pathway of CO2 fixation and that inhabit serpentinizing environments today. Serpentinization generates reduced carbon, nitrogen and - as newer findings suggest - reduced phosphorous compounds that were likely conducive to the origins process. In addition, it gives rise to inorganic microcompartments and proton gradients of the right polarity and of sufficient magnitude to support chemiosmotic ATP synthesis by the rotor-stator ATP synthase. This would help to explain why the principle of chemiosmotic energy harnessing is more conserved (older) than the machinery to generate ion gradients via pumping coupled to exergonic chemical reactions, which in the case of acetogens and methanogens involve H2-dependent CO2 reduction. Serpentinizing systems exist in terrestrial and deep ocean environments. On the early Earth they were probably more abundant than today. There is evidence that serpentinization once occurred on Mars and is likely still occurring on Saturn's icy moon Enceladus, providing a perspective on serpentinization as a source of reductants, catalysts and chemical disequilibrium for life on other worlds.
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Affiliation(s)
- Loraine Schwander
- Institute of Molecular Evolution, Biology Department, Math. -Nat. Faculty, Heinrich-Heine-Universität, Düsseldorf, Germany
| | - Max Brabender
- Institute of Molecular Evolution, Biology Department, Math. -Nat. Faculty, Heinrich-Heine-Universität, Düsseldorf, Germany
| | - Natalia Mrnjavac
- Institute of Molecular Evolution, Biology Department, Math. -Nat. Faculty, Heinrich-Heine-Universität, Düsseldorf, Germany
| | - Jessica L. E. Wimmer
- Institute of Molecular Evolution, Biology Department, Math. -Nat. Faculty, Heinrich-Heine-Universität, Düsseldorf, Germany
| | - Martina Preiner
- Microcosm Earth Center, Max Planck Institute for Terrestrial Microbiology and Philipps-Universität, Marburg, Germany
| | - William F. Martin
- Institute of Molecular Evolution, Biology Department, Math. -Nat. Faculty, Heinrich-Heine-Universität, Düsseldorf, Germany
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15
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Beyazay T, Martin WF, Tüysüz H. Direct Synthesis of Formamide from CO 2 and H 2O with Nickel-Iron Nitride Heterostructures under Mild Hydrothermal Conditions. J Am Chem Soc 2023; 145:19768-19779. [PMID: 37642297 PMCID: PMC7615090 DOI: 10.1021/jacs.3c05412] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 08/31/2023]
Abstract
Formamide can serve as a key building block for the synthesis of organic molecules relevant to premetabolic processes. Natural pathways for its synthesis from CO2 under early earth conditions are lacking. Here, we report the thermocatalytic conversion of CO2 and H2O to formate and formamide over Ni-Fe nitride heterostructures in the absence of synthetic H2 and N2 under mild hydrothermal conditions. While water molecules act as both a solvent and hydrogen source, metal nitrides serve as nitrogen sources to produce formamide in the temperature range of 25-100 °C under 5-50 bar. Longer reaction times promote the C-C bond coupling and formation of acetate and acetamide as additional products. Besides liquid products, methane and ethane are also produced as gas-phase products. Postreaction characterization of Ni-Fe nitride particles reveals structural alteration and provides insights into the potential reaction mechanism. The findings indicate that gaseous CO2 can serve as a carbon source for the formation of C-N bonds in formamide and acetamide over the Ni-Fe nitride heterostructure under simulated hydrothermal vent conditions.
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Affiliation(s)
- Tuğçe Beyazay
- Max-Planck-Institut fur Kohlenforschung, 45470 Mulheim an der Ruhr, Germany
| | - William F. Martin
- Institute of Molecular Evolution, University of Dusseldorf, 40225 Dusseldorf, Germany
| | - Harun Tüysüz
- Max-Planck-Institut fur Kohlenforschung, 45470 Mulheim an der Ruhr, Germany
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16
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Wu S, Zheng Y, Zhang F, Yang C. Battery-free temperature logger for deep-sea hydrothermal fluids based on heat pipe heat exchangers and thermoelectric generators. THE REVIEW OF SCIENTIFIC INSTRUMENTS 2023; 94:095003. [PMID: 37655991 DOI: 10.1063/5.0161279] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/09/2023] [Accepted: 08/10/2023] [Indexed: 09/02/2023]
Abstract
Long-term in situ measurements of the temperature of hydrothermal fluids have great significance in the research of seafloor hydrothermal activities. Herein, we developed a self-powered battery-free temperature logger for measuring and recording the temperature of hydrothermal fluids. A gravity heat pipe made of titanium alloy was employed as the heat-conducting element of the temperature logger to capture heat from a hydrothermal vent and transfer it to the thermoelectric unit. The thermoelectric generator used herein converted the temperature difference into electrical energy to power the circuit of the temperature logger. Numerical analyses and experiments were performed to investigate the performance of the heat pipe and temperature logger. Results show that the temperature logger can realize self-powered starting at a temperature of >76 °C during a tank test. This paper presents a discussion on a new instrument for temperature measurements of deep-sea hydrothermal fluids.
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Affiliation(s)
- Shijun Wu
- State Key Laboratory of Fluid Power and Mechatronic Systems, Zhejiang University, Hangzhou 310027, China
| | - Yunchao Zheng
- State Key Laboratory of Fluid Power and Mechatronic Systems, Zhejiang University, Hangzhou 310027, China
| | - Feng Zhang
- State Key Laboratory of Fluid Power and Mechatronic Systems, Zhejiang University, Hangzhou 310027, China
| | - Canjun Yang
- State Key Laboratory of Fluid Power and Mechatronic Systems, Zhejiang University, Hangzhou 310027, China
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17
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Roberts JH, McKinnon WB, Elder CM, Tobie G, Biersteker JB, Young D, Park RS, Steinbrügge G, Nimmo F, Howell SM, Castillo-Rogez JC, Cable ML, Abrahams JN, Bland MT, Chivers C, Cochrane CJ, Dombard AJ, Ernst C, Genova A, Gerekos C, Glein C, Harris CD, Hay HCFC, Hayne PO, Hedman M, Hussmann H, Jia X, Khurana K, Kiefer WS, Kirk R, Kivelson M, Lawrence J, Leonard EJ, Lunine JI, Mazarico E, McCord TB, McEwen A, Paty C, Quick LC, Raymond CA, Retherford KD, Roth L, Rymer A, Saur J, Scanlan K, Schroeder DM, Senske DA, Shao W, Soderlund K, Spiers E, Styczinski MJ, Tortora P, Vance SD, Villarreal MN, Weiss BP, Westlake JH, Withers P, Wolfenbarger N, Buratti B, Korth H, Pappalardo RT. Exploring the Interior of Europa with the Europa Clipper. SPACE SCIENCE REVIEWS 2023; 219:46. [PMID: 37636325 PMCID: PMC10457249 DOI: 10.1007/s11214-023-00990-y] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 12/24/2022] [Accepted: 07/20/2023] [Indexed: 08/29/2023]
Abstract
The Galileo mission to Jupiter revealed that Europa is an ocean world. The Galileo magnetometer experiment in particular provided strong evidence for a salty subsurface ocean beneath the ice shell, likely in contact with the rocky core. Within the ice shell and ocean, a number of tectonic and geodynamic processes may operate today or have operated at some point in the past, including solid ice convection, diapirism, subsumption, and interstitial lake formation. The science objectives of the Europa Clipper mission include the characterization of Europa's interior; confirmation of the presence of a subsurface ocean; identification of constraints on the depth to this ocean, and on its salinity and thickness; and determination of processes of material exchange between the surface, ice shell, and ocean. Three broad categories of investigation are planned to interrogate different aspects of the subsurface structure and properties of the ice shell and ocean: magnetic induction, subsurface radar sounding, and tidal deformation. These investigations are supplemented by several auxiliary measurements. Alone, each of these investigations will reveal unique information. Together, the synergy between these investigations will expose the secrets of the Europan interior in unprecedented detail, an essential step in evaluating the habitability of this ocean world.
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Affiliation(s)
| | | | - Catherine M Elder
- Jet Propulsion Laboratory, California Institute of Technology, Pasadena, CA, USA
| | | | | | | | - Ryan S Park
- Jet Propulsion Laboratory, California Institute of Technology, Pasadena, CA, USA
| | - Gregor Steinbrügge
- Jet Propulsion Laboratory, California Institute of Technology, Pasadena, CA, USA
| | - Francis Nimmo
- University of California, Santa Cruz, Santa Cruz, CA, USA
| | - Samuel M Howell
- Jet Propulsion Laboratory, California Institute of Technology, Pasadena, CA, USA
| | | | - Morgan L Cable
- Jet Propulsion Laboratory, California Institute of Technology, Pasadena, CA, USA
| | | | | | | | - Corey J Cochrane
- Jet Propulsion Laboratory, California Institute of Technology, Pasadena, CA, USA
| | | | - Carolyn Ernst
- Johns Hopkins Applied Physics Laboratory, Laurel, MD, USA
| | | | | | | | | | - Hamish C F C Hay
- Jet Propulsion Laboratory, California Institute of Technology, Pasadena, CA, USA
| | - Paul O Hayne
- University of Colorado Boulder, Boulder, CO, USA
| | | | - Hauke Hussmann
- German Aerospace Center Institute of Planetary Research, Berlin, Germany
| | | | | | - Walter S Kiefer
- Lunar and Planetary Institute, University Space Research Association, Houston, TX, USA
| | | | | | | | - Erin J Leonard
- Jet Propulsion Laboratory, California Institute of Technology, Pasadena, CA, USA
| | | | | | | | | | | | | | - Carol A Raymond
- Jet Propulsion Laboratory, California Institute of Technology, Pasadena, CA, USA
| | - Kurt D Retherford
- Sapienza University of Rome, Rome, Italy
- University of Texas at San Antonio, San Antonio, TX, USA
| | - Lorenz Roth
- KTH Royal Institute of Technology, Stockholm, Sweden
| | - Abigail Rymer
- Johns Hopkins Applied Physics Laboratory, Laurel, MD, USA
| | | | | | | | - David A Senske
- Jet Propulsion Laboratory, California Institute of Technology, Pasadena, CA, USA
| | - Wencheng Shao
- University of California, Santa Cruz, Santa Cruz, CA, USA
| | | | | | - Marshall J Styczinski
- Jet Propulsion Laboratory, California Institute of Technology, Pasadena, CA, USA
- University of Washington, Seattle, WA, USA
| | - Paolo Tortora
- Alma Mater Studiorum - Università di Bologna, Bologna, Italy
| | - Steven D Vance
- Jet Propulsion Laboratory, California Institute of Technology, Pasadena, CA, USA
| | | | | | | | | | | | - Bonnie Buratti
- Jet Propulsion Laboratory, California Institute of Technology, Pasadena, CA, USA
| | - Haje Korth
- Johns Hopkins Applied Physics Laboratory, Laurel, MD, USA
| | - Robert T Pappalardo
- Jet Propulsion Laboratory, California Institute of Technology, Pasadena, CA, USA
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18
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Gheibzadeh MS, Manyumwa CV, Tastan Bishop Ö, Shahbani Zahiri H, Parkkila S, Zolfaghari Emameh R. Genome Study of α-, β-, and γ-Carbonic Anhydrases from the Thermophilic Microbiome of Marine Hydrothermal Vent Ecosystems. BIOLOGY 2023; 12:770. [PMID: 37372055 DOI: 10.3390/biology12060770] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/23/2023] [Revised: 05/17/2023] [Accepted: 05/17/2023] [Indexed: 06/29/2023]
Abstract
Carbonic anhydrases (CAs) are metalloenzymes that can help organisms survive in hydrothermal vents by hydrating carbon dioxide (CO2). In this study, we focus on alpha (α), beta (β), and gamma (γ) CAs, which are present in the thermophilic microbiome of marine hydrothermal vents. The coding genes of these enzymes can be transferred between hydrothermal-vent organisms via horizontal gene transfer (HGT), which is an important tool in natural biodiversity. We performed big data mining and bioinformatics studies on α-, β-, and γ-CA coding genes from the thermophilic microbiome of marine hydrothermal vents. The results showed a reasonable association between thermostable α-, β-, and γ-CAs in the microbial population of the hydrothermal vents. This relationship could be due to HGT. We found evidence of HGT of α- and β-CAs between Cycloclasticus sp., a symbiont of Bathymodiolus heckerae, and an endosymbiont of Riftia pachyptila via Integrons. Conversely, HGT of β-CA genes from the endosymbiont Tevnia jerichonana to the endosymbiont Riftia pachyptila was detected. In addition, Hydrogenovibrio crunogenus SP-41 contains a β-CA gene on genomic islands (GIs). This gene can be transferred by HGT to Hydrogenovibrio sp. MA2-6, a methanotrophic endosymbiont of Bathymodiolus azoricus, and a methanotrophic endosymbiont of Bathymodiolus puteoserpentis. The endosymbiont of R. pachyptila has a γ-CA gene in the genome. If α- and β-CA coding genes have been derived from other microorganisms, such as endosymbionts of T. jerichonana and Cycloclasticus sp. as the endosymbiont of B. heckerae, through HGT, the theory of the necessity of thermostable CA enzymes for survival in the extreme ecosystem of hydrothermal vents is suggested and helps the conservation of microbiome natural diversity in hydrothermal vents. These harsh ecosystems, with their integral players, such as HGT and endosymbionts, significantly impact the enrichment of life on Earth and the carbon cycle in the ocean.
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Affiliation(s)
- Mohammad Sadegh Gheibzadeh
- Department of Energy and Environmental Biotechnology, National Institute of Genetic Engineering and Biotechnology (NIGEB), Tehran 14965/161, Iran
| | - Colleen Varaidzo Manyumwa
- Research Unit in Bioinformatics (Rubi), Department of Biochemistry and Microbiology, Rhodes University, Grahamstown 6140, South Africa
| | - Özlem Tastan Bishop
- Research Unit in Bioinformatics (Rubi), Department of Biochemistry and Microbiology, Rhodes University, Grahamstown 6140, South Africa
| | - Hossein Shahbani Zahiri
- Department of Energy and Environmental Biotechnology, National Institute of Genetic Engineering and Biotechnology (NIGEB), Tehran 14965/161, Iran
| | - Seppo Parkkila
- Faculty of Medicine and Health Technology, Tampere University, 33520 Tampere, Finland
- Fimlab Ltd., Tampere University Hospital, 33520 Tampere, Finland
| | - Reza Zolfaghari Emameh
- Department of Energy and Environmental Biotechnology, National Institute of Genetic Engineering and Biotechnology (NIGEB), Tehran 14965/161, Iran
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19
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Russell MJ. A self-sustaining serpentinization mega-engine feeds the fougerite nanoengines implicated in the emergence of guided metabolism. Front Microbiol 2023; 14:1145915. [PMID: 37275164 PMCID: PMC10236563 DOI: 10.3389/fmicb.2023.1145915] [Citation(s) in RCA: 5] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/16/2023] [Accepted: 03/22/2023] [Indexed: 06/07/2023] Open
Abstract
The demonstration by Ivan Barnes et al. that the serpentinization of fresh Alpine-type ultramafic rocks results in the exhalation of hot alkaline fluids is foundational to the submarine alkaline vent theory (AVT) for life's emergence to its 'improbable' thermodynamic state. In AVT, such alkaline fluids ≤ 150°C, bearing H2 > CH4 > HS--generated and driven convectively by a serpentinizing exothermic mega-engine operating in the ultramafic crust-exhale into the iron-rich, CO2> > > NO3--bearing Hadean ocean to result in hydrothermal precipitate mounds comprising macromolecular ferroferric-carbonate oxyhydroxide and minor sulfide. As the nanocrystalline minerals fougerite/green rust and mackinawite (FeS), they compose the spontaneously precipitated inorganic membranes that keep the highly contrasting solutions apart, thereby maintaining redox and pH disequilibria. They do so in the form of fine chimneys and chemical gardens. The same disequilibria drive the reduction of CO2 to HCOO- or CO, and the oxidation of CH4 to a methyl group-the two products reacting to form acetate in a sequence antedating the 'energy-producing' acetyl coenzyme-A pathway. Fougerite is a 2D-layered mineral in which the hydrous interlayers themselves harbor 2D solutions, in effect constricted to ~ 1D by preferentially directed electron hopping/tunneling, and proton Gröthuss 'bucket-brigading' when subject to charge. As a redox-driven nanoengine or peristaltic pump, fougerite forces the ordered reduction of nitrate to ammonium, the amination of pyruvate and oxalate to alanine and glycine, and their condensation to short peptides. In turn, these peptides have the flexibility to sequester the founding inorganic iron oxyhydroxide, sulfide, and pyrophosphate clusters, to produce metal- and phosphate-dosed organic films and cells. As the feed to the hydrothermal mound fails, the only equivalent sustenance on offer to the first autotrophs is the still mildly serpentinizing upper crust beneath. While the conditions here are very much less bountiful, they do offer the similar feed and disequilibria the survivors are accustomed to. Sometime during this transition, a replicating non-ribosomal guidance system is discovered to provide the rules to take on the incrementally changing surroundings. The details of how these replicating apparatuses emerged are the hard problem, but by doing so the progenote archaea and bacteria could begin to colonize what would become the deep biosphere. Indeed, that the anaerobic nitrate-respiring methanotrophic archaea and the deep-branching Acetothermia presently comprise a portion of that microbiome occupying serpentinizing rocks offers circumstantial support for this notion. However, the inescapable, if jarring conclusion is drawn that, absent fougerite/green rust, there would be no structured channelway to life.
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Affiliation(s)
- Michael J. Russell
- Dipartimento di Chimica, Università degli Studi di Torino, Torino, Italy
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20
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Chen C, Sigwart JD. The lost vent gastropod species of Lothar A. Beck. Zootaxa 2023; 5270:401-436. [PMID: 37518156 DOI: 10.11646/zootaxa.5270.3.2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/20/2023] [Indexed: 08/01/2023]
Abstract
Deep-sea hydrothermal vents host many endemic species adapted to these chemosynthesis-based ecosystems. The exploration of vent fields including those in the tropical Pacific is currently accelerating, due to the development of deep-sea mining for valuable minerals. Molecular evidence has shown that many vent endemic gastropod lineages include sibling species pairs in adjacent oceanic basins. While the fauna of the Manus Basin is relatively well described, many lineages in adjacent regions in North Fiji or Lau Basins are recognised as separate species, but unnamed. Valuable material from this fauna was studied by Lothar A. Beck in the 1990s, who fully drafted descriptions for these species, but did not publish them. Beck's manuscript names, prior to the present study, represented real species but nomina nuda without taxonomic validity. Here we present the descriptions of seven new species and one new genus, extracted from Beck's unpublished manuscript that was rediscovered after his death in 2020. The publication of these descriptions makes them taxonomically available and respects the scientific contributions of Beck. Providing valid descriptions of these species is critically important now to enable the recognition of species that may require conservation in the face of future environmental destruction. Symmetriapelta Beck, gen. nov. is described as new genus. Bathyacmaea nadinae Beck, sp. nov., Pyropelta ovalis Beck, sp. nov., Pseudorimula leisei Beck, sp. nov., Lepetodrilus fijiensis Beck, sp. nov., Shinkailepas conspira Beck, sp. nov., Symmetromphalus mcleani Beck, sp. nov. and Symmetriapelta wareni Beck, sp. nov. are introduced as new species.
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Affiliation(s)
- Chong Chen
- X-STAR; Japan Agency for Marine-Earth Science and Technology (JAMSTEC); 2-15 Natsushima-cho; Yokosuka; Kanagawa; 237- 0061; Japan.
| | - Julia D Sigwart
- Department of Marine Zoology; Senckenberg Research Institute and Museum; Frankfurt; Germany.
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21
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Costa V, Sciutteri V, Consoli P, Manea E, Menini E, Andaloro F, Romeo T, Danovaro R. Volcanic-associated ecosystems of the Mediterranean Sea: a systematic map and an interactive tool to support their conservation. PeerJ 2023; 11:e15162. [PMID: 37013142 PMCID: PMC10066691 DOI: 10.7717/peerj.15162] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/17/2023] [Accepted: 03/13/2023] [Indexed: 03/31/2023] Open
Abstract
Background
Hydrothermal vents, cold seeps, pockmarks and seamounts are widely distributed on the ocean floor. Over the last fifty years, the knowledge about these volcanic-associated marine ecosystems has notably increased, yet available information is still limited, scattered, and unsuitable to support decision-making processes for the conservation and management of the marine environment.
Methods
Here we searched the Scopus database and the platform Web of Science to collect the scientific information available for these ecosystems in the Mediterranean Sea. The collected literature and the bio-geographic and population variables extracted are provided into a systematic map as an online tool that includes an updated database searchable through a user-friendly R-shiny app.
Results
The 433 literature items with almost one thousand observations provided evidence of more than 100 different volcanic-associated marine ecosystem sites, mostly distributed in the shallow waters of the Mediterranean Sea. Less than 30% of these sites are currently included in protected or regulated areas. The updated database available in the R-shiny app is a tool that could guide the implementation of more effective protection measures for volcanic-associated marine ecosystems in the Mediterranean Sea within existing management instruments under the EU Habitats Directive. Moreover, the information provided in this study could aid policymakers in defining the priorities for the future protection measures needed to achieve the targets of the UN Agenda 2030.
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Affiliation(s)
- Valentina Costa
- Department of Integrative Marine Ecology (EMI), Stazione Zoologica Anton Dohrn, Amendolara, Italy
| | - Valentina Sciutteri
- Department of Integrative Marine Ecology (EMI), Stazione Zoologica Anton Dohrn, Messina, Italy
| | - Pierpaolo Consoli
- Department of Integrative Marine Ecology (EMI), Stazione Zoologica Anton Dohrn, Messina, Italy
| | - Elisabetta Manea
- Laboratoire d’Ecogéochimie des Environnements Benthiques (LECOB), Sorbonne Université, Banyuls sur Mer, France
| | - Elisabetta Menini
- Nicholas School of Environment, Duke University, Beaufort, NC, United States
| | - Franco Andaloro
- Department of Integrative Marine Ecology (EMI), Stazione Zoologica Anton Dohrn, Palermo, Italy
| | - Teresa Romeo
- Department of Integrative Marine Ecology (EMI), Stazione Zoologica Anton Dohrn, Milazzo, Italy
- National Institute for Environmental Protection and Research, Milazzo, Italy
| | - Roberto Danovaro
- Department of Life and Environmental Sciences, Polytechnic University of Marche, Ancona, Italy
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22
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Wang M, Ruan L, Liu M, Liu Z, He J, Zhang L, Wang Y, Shi H, Chen M, Yang F, Zeng R, He J, Guo C, Chen J. The genome of a vestimentiferan tubeworm (Ridgeia piscesae) provides insights into its adaptation to a deep-sea environment. BMC Genomics 2023; 24:72. [PMID: 36774470 PMCID: PMC9921365 DOI: 10.1186/s12864-023-09166-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/11/2022] [Accepted: 02/03/2023] [Indexed: 02/13/2023] Open
Abstract
BACKGROUND Vestimentifera (Polychaeta, Siboglinidae) is a taxon of deep-sea worm-like animals living in deep-sea hydrothermal vents, cold seeps, and organic falls. The morphology and lifespan of Ridgeia piscesae, which is the only vestimentiferan tubeworm species found in the hydrothermal vents on the Juan de Fuca Ridge, vary greatly according to endemic environment. Recent analyses have revealed the genomic basis of adaptation in three vent- and seep-dwelling vestimentiferan tubeworms. However, the evolutionary history and mechanism of adaptation in R. piscesae, a unique species in the family Siboglinidae, remain to be investigated. RESULT We assembled a draft genome of R. piscesae collected at the Cathedral vent of the Juan de Fuca Ridge. Comparative genomic analysis showed that vent-dwelling tubeworms with a higher growth rate had smaller genome sizes than seep-dwelling tubeworms that grew much slower. A strong positive correlation between repeat content and genome size but not intron size and the number of protein-coding genes was identified in these deep-sea tubeworm species. Evolutionary analysis revealed that Ridgeia pachyptila and R. piscesae, the two tubeworm species that are endemic to hydrothermal vents of the eastern Pacific, started to diverge between 28.5 and 35 million years ago. Four genes involved in cell proliferation were found to be subject to positive selection in the genome of R. piscesae. CONCLUSION Ridgeia pachyptila and R. piscesae started to diverge after the formation of the Gorda/Juan de Fuca/Explorer ridge systems and the East Pacific Rise. The high growth rates of vent-dwelling tubeworms might be derived from their small genome sizes. Cell proliferation is important for regulating the growth rate in R. piscesae.
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Affiliation(s)
- Muhua Wang
- grid.12981.330000 0001 2360 039XState Key Laboratory for Biocontrol, Southern Marine Science and Engineering Guangdong Laboratory (Zhuhai), School of Marine Sciences, Sun Yat-Sen University, Zhuhai, 519082 China ,grid.12981.330000 0001 2360 039XChina-ASEAN Belt and Road Joint Laboratory On Mariculture Technology, Guangdong Province Key Laboratory for Aquatic Economic Animals, School of Life Sciences, Sun Yat-Sen University, Guangzhou, 510275 China
| | - Lingwei Ruan
- grid.453137.70000 0004 0406 0561State Key Laboratory Breeding Base of Marine Genetic Resources, Key Laboratory of Marine Genetic Resources of Ministry of Natural Resources, Fujian Key Laboratory of Marine Genetic Resources, Ministry of Natural Resources, Third Institute of Oceanography, Xiamen, 361005 China
| | - Meng Liu
- grid.410753.4Novogene Bioinformatics Institute, Beijing, 100083 China
| | - Zixuan Liu
- grid.12981.330000 0001 2360 039XState Key Laboratory for Biocontrol, Southern Marine Science and Engineering Guangdong Laboratory (Zhuhai), School of Marine Sciences, Sun Yat-Sen University, Zhuhai, 519082 China
| | - Jian He
- grid.12981.330000 0001 2360 039XState Key Laboratory for Biocontrol, Southern Marine Science and Engineering Guangdong Laboratory (Zhuhai), School of Marine Sciences, Sun Yat-Sen University, Zhuhai, 519082 China ,grid.12981.330000 0001 2360 039XChina-ASEAN Belt and Road Joint Laboratory On Mariculture Technology, Guangdong Province Key Laboratory for Aquatic Economic Animals, School of Life Sciences, Sun Yat-Sen University, Guangzhou, 510275 China
| | - Long Zhang
- grid.12981.330000 0001 2360 039XState Key Laboratory for Biocontrol, Southern Marine Science and Engineering Guangdong Laboratory (Zhuhai), School of Marine Sciences, Sun Yat-Sen University, Zhuhai, 519082 China
| | - Yuanyuan Wang
- grid.12981.330000 0001 2360 039XState Key Laboratory for Biocontrol, Southern Marine Science and Engineering Guangdong Laboratory (Zhuhai), School of Marine Sciences, Sun Yat-Sen University, Zhuhai, 519082 China
| | - Hong Shi
- grid.453137.70000 0004 0406 0561State Key Laboratory Breeding Base of Marine Genetic Resources, Key Laboratory of Marine Genetic Resources of Ministry of Natural Resources, Fujian Key Laboratory of Marine Genetic Resources, Ministry of Natural Resources, Third Institute of Oceanography, Xiamen, 361005 China
| | - Mingliang Chen
- grid.453137.70000 0004 0406 0561State Key Laboratory Breeding Base of Marine Genetic Resources, Key Laboratory of Marine Genetic Resources of Ministry of Natural Resources, Fujian Key Laboratory of Marine Genetic Resources, Ministry of Natural Resources, Third Institute of Oceanography, Xiamen, 361005 China
| | - Feng Yang
- grid.453137.70000 0004 0406 0561State Key Laboratory Breeding Base of Marine Genetic Resources, Key Laboratory of Marine Genetic Resources of Ministry of Natural Resources, Fujian Key Laboratory of Marine Genetic Resources, Ministry of Natural Resources, Third Institute of Oceanography, Xiamen, 361005 China
| | - Runying Zeng
- grid.453137.70000 0004 0406 0561State Key Laboratory Breeding Base of Marine Genetic Resources, Key Laboratory of Marine Genetic Resources of Ministry of Natural Resources, Fujian Key Laboratory of Marine Genetic Resources, Ministry of Natural Resources, Third Institute of Oceanography, Xiamen, 361005 China
| | - Jianguo He
- State Key Laboratory for Biocontrol, Southern Marine Science and Engineering Guangdong Laboratory (Zhuhai), School of Marine Sciences, Sun Yat-Sen University, Zhuhai, 519082, China. .,China-ASEAN Belt and Road Joint Laboratory On Mariculture Technology, Guangdong Province Key Laboratory for Aquatic Economic Animals, School of Life Sciences, Sun Yat-Sen University, Guangzhou, 510275, China.
| | - Changjun Guo
- State Key Laboratory for Biocontrol, Southern Marine Science and Engineering Guangdong Laboratory (Zhuhai), School of Marine Sciences, Sun Yat-Sen University, Zhuhai, 519082, China. .,China-ASEAN Belt and Road Joint Laboratory On Mariculture Technology, Guangdong Province Key Laboratory for Aquatic Economic Animals, School of Life Sciences, Sun Yat-Sen University, Guangzhou, 510275, China.
| | - Jianming Chen
- State Key Laboratory Breeding Base of Marine Genetic Resources, Key Laboratory of Marine Genetic Resources of Ministry of Natural Resources, Fujian Key Laboratory of Marine Genetic Resources, Ministry of Natural Resources, Third Institute of Oceanography, Xiamen, 361005, China. .,Fujian Key Laboratory On Conservation and Sustainable Utilization of Marine Biodiversity, Fuzhou Institute of Oceanography, Minjiang University, Fuzhou, 350108, China.
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23
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Boyd ES, Spietz RL, Kour M, Colman DR. A naturalist perspective of microbiology: Examples from methanogenic archaea. Environ Microbiol 2023; 25:184-198. [PMID: 36367391 DOI: 10.1111/1462-2920.16285] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/05/2022] [Accepted: 11/09/2022] [Indexed: 11/13/2022]
Abstract
Storytelling has been the primary means of knowledge transfer over human history. The effectiveness and reach of stories are improved when the message is appropriate for the target audience. Oftentimes, the stories that are most well received and recounted are those that have a clear purpose and that are told from a variety of perspectives that touch on the varied interests of the target audience. Whether scientists realize or not, they are accustomed to telling stories of their own scientific discoveries through the preparation of manuscripts, presentations, and lectures. Perhaps less frequently, scientists prepare review articles or book chapters that summarize a body of knowledge on a given subject matter, meant to be more holistic recounts of a body of literature. Yet, by necessity, such summaries are often still narrow in their scope and are told from the perspective of a particular discipline. In other words, interdisciplinary reviews or book chapters tend to be the rarity rather than the norm. Here, we advocate for and highlight the benefits of interdisciplinary perspectives on microbiological subjects.
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Affiliation(s)
- Eric S Boyd
- Department of Microbiology and Cell Biology, Montana State University, Bozeman, Montana, USA
| | - Rachel L Spietz
- Department of Microbiology and Cell Biology, Montana State University, Bozeman, Montana, USA
| | - Manjinder Kour
- Department of Microbiology and Cell Biology, Montana State University, Bozeman, Montana, USA
| | - Daniel R Colman
- Department of Microbiology and Cell Biology, Montana State University, Bozeman, Montana, USA
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24
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Brunner O, Chen C, Giguère T, Kawagucci S, Tunnicliffe V, Watanabe HK, Mitarai S. Species assemblage networks identify regional connectivity pathways among hydrothermal vents in the Northwest Pacific. Ecol Evol 2022; 12:e9612. [PMID: 36568865 PMCID: PMC9771708 DOI: 10.1002/ece3.9612] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/08/2022] [Revised: 10/24/2022] [Accepted: 11/22/2022] [Indexed: 12/24/2022] Open
Abstract
The distribution of species among spatially isolated habitat patches supports regional biodiversity and stability, so understanding the underlying processes and structure is a key target of conservation. Although multivariate statistics can infer the connectivity processes driving species distribution, such as dispersal and habitat suitability, they rarely explore the structure. Methods from graph theory, applied to distribution data, give insights into both connectivity pathways and processes by intuitively formatting the data as a network of habitat patches. We apply these methods to empirical data from the hydrothermal vent habitats of the Northwest Pacific. Hydrothermal vents are "oases" of biological productivity and endemicity on the seafloor that are imminently threatened by anthropogenic disturbances with unknown consequences to biodiversity. Here, we describe the structure of species assemblage networks at hydrothermal vents, how local and regional parameters affect their structure, and the implications for conservation. Two complementary networks were formed from an extensive species assemblage dataset: a similarity network of vent site nodes linked by weighted edges based on their pairwise assemblage similarity and a bipartite network of species nodes linked to vent site nodes at which they are present. Using these networks, we assessed the role of individual vent sites in maintaining network connectivity and identified biogeographic sub-regions. The three sub-regions and two outlying sites are separated by their spatial arrangement and local environmental filters. Both networks detected vent sites that play a disproportionately important role in regional pathways, while the bipartite network also identified key vent sites maintaining the distinct species assemblages of their sub-regions. These regional connectivity pathways provide insights into historical colonization routes, while sub-regional connectivity pathways are of value when selecting sites for conservation and/or estimating the multivent impacts from proposed deep-sea mining.
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Affiliation(s)
- Otis Brunner
- Okinawa Institute of Science and TechnologyOkinawaJapan
| | - Chong Chen
- X‐STAR, Japan Agency for Marine‐Earth Science and Technology (JAMSTEC)YokosukaJapan
| | - Thomas Giguère
- School of Earth & Ocean SciencesUniversity of VictoriaVictoriaBritish ColumbiaCanada
| | - Shinsuke Kawagucci
- X‐STAR, Japan Agency for Marine‐Earth Science and Technology (JAMSTEC)YokosukaJapan,Project Team for Developing Innovative Technologies for Exploration of Deep‐Sea ResourcesJapan Agency for Marine‐Earth Science and Technology (JAMSTEC)YokosukaJapan
| | - Verena Tunnicliffe
- School of Earth & Ocean SciencesUniversity of VictoriaVictoriaBritish ColumbiaCanada,Department of BiologyUniversity of VictoriaVictoriaBritish ColumbiaCanada
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25
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Farrag MM. Pattern evaluation of deep-sea catch in the Mediterranean Sea, Egypt regarding CPUE, diversity, Sharks, and discards. SCIENTIFIC AFRICAN 2022. [DOI: 10.1016/j.sciaf.2022.e01431] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open
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26
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Lerin-Morales KM, Olguín LF, Mateo-Martí E, Colín-García M. Prebiotic Chemistry Experiments Using Microfluidic Devices. Life (Basel) 2022; 12:life12101665. [PMID: 36295100 PMCID: PMC9605377 DOI: 10.3390/life12101665] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/30/2022] [Revised: 10/15/2022] [Accepted: 10/18/2022] [Indexed: 11/16/2022] Open
Abstract
Microfluidic devices are small tools mostly consisting of one or more channels, with dimensions between one and hundreds of microns, where small volumes of fluids are manipulated. They have extensive use in the biomedical and chemical fields; however, in prebiotic chemistry, they only have been employed recently. In prebiotic chemistry, just three types of microfluidic devices have been used: the first ones are Y-form devices with laminar co-flow, used to study the precipitation of minerals in hydrothermal vents systems; the second ones are microdroplet devices that can form small droplets capable of mimic cellular compartmentalization; and the last ones are devices with microchambers that recreate the microenvironment inside rock pores under hydrothermal conditions. In this review, we summarized the experiments in the field of prebiotic chemistry that employed microfluidic devices. The main idea is to incentivize their use and discuss their potential to perform novel experiments that could contribute to unraveling some prebiotic chemistry questions.
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Affiliation(s)
- Karen Melissa Lerin-Morales
- Posgrado en Ciencias de la Tierra, Universidad Nacional Autónoma de México, Ciudad de Mexico 04510, Mexico
- Correspondence: (K.M.L.-M.); (M.C.-G.); Tel.: +52-(55)-5622-4300 (ext. 164) (M.C.-G.)
| | - Luis F. Olguín
- Laboratorio de Biofisicoquímica, Facultad de Química, Universidad Nacional Autónoma de México, Ciudad de Mexico 04510, Mexico
| | - Eva Mateo-Martí
- Centro de Astrobiología (CAB), CSIC-INTA, Carretera de Ajalvir Km 4, Torrejón de Ardoz, 28850 Madrid, Spain
| | - María Colín-García
- Instituto de Geología, Universidad Nacional Autónoma de México, Ciudad de Mexico 04510, Mexico
- Correspondence: (K.M.L.-M.); (M.C.-G.); Tel.: +52-(55)-5622-4300 (ext. 164) (M.C.-G.)
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27
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Chen C, Hilário A, Rodrigues CF, Ramirez-Llodra E. Integrative taxonomy of a new cocculinid limpet dominating the Aurora Vent Field in the central Arctic ocean. ROYAL SOCIETY OPEN SCIENCE 2022; 9:220885. [PMID: 36249326 PMCID: PMC9554515 DOI: 10.1098/rsos.220885] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 07/12/2022] [Accepted: 09/16/2022] [Indexed: 06/16/2023]
Abstract
Deep-sea hydrothermal vents host lush chemosynthetic communities, dominated by endemic fauna that cannot live in other ecosystems. Despite over 500 active vents found worldwide, the Arctic has remained a little-studied piece of vent biogeography. Though located as early as 2001, the faunal communities of the Aurora Vent Field on the ultra-slow spreading Gakkel Ridge remained unsampled until recently, owing to difficulties with sampling on complex topography below permanent ice. Here, we report an unusual cocculinid limpet abundant on inactive chimneys in Aurora (3883-3884 m depth), describing it as Cocculina aurora n. sp. using an integrative approach combining traditional dissection, electron microscopy, molecular phylogeny, and three-dimensional anatomical reconstruction. Gross anatomy of the new species was typical for Cocculina, but it has a unique radula with broad, multi-cuspid rachidian where the outermost lateral is reduced compared to typical cocculinids. A phylogenetic reconstruction using the mitochondrial COI gene also confirmed its placement in Cocculina. Only the second cocculinid found at vents following the description of the Antarctic Cocculina enigmadonta, this is currently the sole cocculinid restricted to vents. Our discovery adds to the evidence that Arctic vents host animal communities closely associated with wood falls and distinct from other parts of the world.
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Affiliation(s)
- Chong Chen
- X-STAR, Japan Agency for Marine-Earth Science and Technology (JAMSTEC), 2-15 Natsushima-cho, Yokosuka, Kanagawa 237-0061, Japan
| | - Ana Hilário
- Centre for Environmental and Marine Studies & Department of Biology, University of Aveiro, 3810-193 Aveiro, Portugal
| | - Clara F. Rodrigues
- Centre for Environmental and Marine Studies & Department of Biology, University of Aveiro, 3810-193 Aveiro, Portugal
| | - Eva Ramirez-Llodra
- Norwegian Institute for Water Research, Oslo, Norway
- REV Ocean, Lysaker, Norway
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28
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Afzal SS, Akbar W, Rodriguez O, Doumet M, Ha U, Ghaffarivardavagh R, Adib F. Battery-free wireless imaging of underwater environments. Nat Commun 2022; 13:5546. [PMID: 36163186 PMCID: PMC9512789 DOI: 10.1038/s41467-022-33223-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/13/2021] [Accepted: 09/02/2022] [Indexed: 12/04/2022] Open
Abstract
Imaging underwater environments is of great importance to marine sciences, sustainability, climatology, defense, robotics, geology, space exploration, and food security. Despite advances in underwater imaging, most of the ocean and marine organisms remain unobserved and undiscovered. Existing methods for underwater imaging are unsuitable for scalable, long-term, in situ observations because they require tethering for power and communication. Here we describe underwater backscatter imaging, a method for scalable, real-time wireless imaging of underwater environments using fully-submerged battery-free cameras. The cameras power up from harvested acoustic energy, capture color images using ultra-low-power active illumination and a monochrome image sensor, and communicate wirelessly at net-zero-power via acoustic backscatter. We demonstrate wireless battery-free imaging of animals, plants, pollutants, and localization tags in enclosed and open-water environments. The method’s self-sustaining nature makes it desirable for massive, continuous, and long-term ocean deployments with many applications including marine life discovery, submarine surveillance, and underwater climate change monitoring. The authors present an approach to underwater imaging, which does not require tethering or batteries. The low-power camera uses power from harvested acoustic energy and communicates colour images wirelessly via acoustic backscatter.
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Affiliation(s)
- Sayed Saad Afzal
- Department of Electrical Engineering and Computer Science, Massachusetts Institute of Technology, Cambridge, MA, 02139, USA.,MIT Media Lab, Massachusetts Institute of Technology, Cambridge, MA, 02139, USA
| | - Waleed Akbar
- MIT Media Lab, Massachusetts Institute of Technology, Cambridge, MA, 02139, USA.,Program in Media Arts and Sciences, Massachusetts Institute of Technology, Cambridge, MA, 02139, USA
| | - Osvy Rodriguez
- Department of Electrical Engineering and Computer Science, Massachusetts Institute of Technology, Cambridge, MA, 02139, USA.,MIT Media Lab, Massachusetts Institute of Technology, Cambridge, MA, 02139, USA
| | - Mario Doumet
- MIT Media Lab, Massachusetts Institute of Technology, Cambridge, MA, 02139, USA
| | - Unsoo Ha
- MIT Media Lab, Massachusetts Institute of Technology, Cambridge, MA, 02139, USA
| | | | - Fadel Adib
- Department of Electrical Engineering and Computer Science, Massachusetts Institute of Technology, Cambridge, MA, 02139, USA. .,MIT Media Lab, Massachusetts Institute of Technology, Cambridge, MA, 02139, USA. .,Program in Media Arts and Sciences, Massachusetts Institute of Technology, Cambridge, MA, 02139, USA. .,MIT Sea Grant, Massachusetts Institute of Technology, Cambridge, MA, 02139, USA.
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29
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Blasiak R, Jouffray JB, Amon DJ, Moberg F, Claudet J, Søgaard Jørgensen P, Pranindita A, Wabnitz CCC, Österblom H. A forgotten element of the blue economy: marine biomimetics and inspiration from the deep sea. PNAS NEXUS 2022; 1:pgac196. [PMID: 36714844 PMCID: PMC9802412 DOI: 10.1093/pnasnexus/pgac196] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Indexed: 02/01/2023]
Abstract
The morphology, physiology, and behavior of marine organisms have been a valuable source of inspiration for solving conceptual and design problems. Here, we introduce this rich and rapidly expanding field of marine biomimetics, and identify it as a poorly articulated and often overlooked element of the ocean economy associated with substantial monetary benefits. We showcase innovations across seven broad categories of marine biomimetic design (adhesion, antifouling, armor, buoyancy, movement, sensory, stealth), and use this framing as context for a closer consideration of the increasingly frequent focus on deep-sea life as an inspiration for biomimetic design. We contend that marine biomimetics is not only a "forgotten" sector of the ocean economy, but has the potential to drive appreciation of nonmonetary values, conservation, and stewardship, making it well-aligned with notions of a sustainable blue economy. We note, however, that the highest ambitions for a blue economy are that it not only drives sustainability, but also greater equity and inclusivity, and conclude by articulating challenges and considerations for bringing marine biomimetics onto this trajectory.
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Affiliation(s)
- Robert Blasiak
- To whom correspondence should be addressed: Robert Blasiak, Stockholm Resilience Centre, Stockholm University, 106 91, Stockholm, Sweden.
| | | | - Diva J Amon
- SpeSeas, D'Abadie, Trinidad and Tobago,Marine Science Institute, University of California, Santa Barbara, CA 93106, USA
| | - Fredrik Moberg
- Stockholm Resilience Centre, Stockholm University, 106 91 Stockholm, Sweden
| | - Joachim Claudet
- National Center for Scientific Research, PSL Université Paris, CRIOBE, CNRS-EPHE-UPVD, Maison de l'Océan, 195 rue Saint-Jacques, 75005 Paris, France
| | - Peter Søgaard Jørgensen
- Stockholm Resilience Centre, Stockholm University, 106 91 Stockholm, Sweden,The Global Economic Dynamics and the Biosphere Academy Program, Royal Swedish Academy of Science, 104 05 Stockholm, Sweden
| | - Agnes Pranindita
- Stockholm Resilience Centre, Stockholm University, 106 91 Stockholm, Sweden
| | - Colette C C Wabnitz
- Stanford Center for Ocean Solutions, Stanford University, 473 Via Ortega, Stanford, CA 94305, USA,Institute for the Oceans and Fisheries, The University of British Columbia, 2202 Main Mall, Vancouver, BC V6T1Z4, Canada
| | - Henrik Österblom
- Stockholm Resilience Centre, Stockholm University, 106 91 Stockholm, Sweden,Graduate School of Agricultural and Life Sciences, The University of Tokyo, 1-1-1, Yayoi, Bunkyo-ku, Tokyo 113-8657, Japan,South American Institute for Resilience and Sustainability Studies, CP 20200 Maldonado, Uruguay
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30
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Chen C, Watanabe HK. A new provannid snail (Gastropoda, Abyssochrysoidea) discovered from Northwest Eifuku Volcano, Mariana Arc. Zookeys 2022; 1112:123-137. [PMID: 36760627 PMCID: PMC9848648 DOI: 10.3897/zookeys.1112.85950] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/28/2022] [Accepted: 06/09/2022] [Indexed: 11/12/2022] Open
Abstract
Gastropods in the family Provannidae are characteristic members of deep-sea chemosynthesis-based communities. Recently, surveys of hydrothermal vents and hydrocarbon seeps in the western Pacific have revealed a high diversity of provannids, with new discoveries continuing to be made. Here, we report and describe a further new species, Provannaexquisita sp. nov., discovered from the Northwest Eifuku volcano on the Mariana Arc. This new species is distinguished from all other described Provanna species by its exaggerated sculpture characterised by two to three sharply raised, flange-like keels on the teleoconch whorls. The status of P.exquisita sp. nov. is also supported by a molecular phylogeny reconstruction using the mitochondrial cytochrome c oxidase subunit I (COI) gene, which suggested that it is most closely related to a clade of three species described from Okinawa Trough vents including P.clathrata, P.subglabra, and P.fenestrata. Despite being one of the better-explored regions of the world in terms of hydrothermal vent biodiversity, new discoveries like P.exquisita sp. nov. continue to remind us that we are nowhere near fully documenting the species diversity in these unique ecosystems-despite the species being threatened from imminent anthropogenic impacts such as deep-sea mining.
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Affiliation(s)
- Chong Chen
- X-STAR, Japan Agency for Marine-Earth Science and Technology (JAMSTEC), 2-15 Natsushima-cho, Yokosuka, Kanagawa, 237-0061, JapanX-STAR, Japan Agency for Marine-Earth Science and Technology (JAMSTEC)YokosukaJapan
| | - Hiromi Kayama Watanabe
- X-STAR, Japan Agency for Marine-Earth Science and Technology (JAMSTEC), 2-15 Natsushima-cho, Yokosuka, Kanagawa, 237-0061, JapanX-STAR, Japan Agency for Marine-Earth Science and Technology (JAMSTEC)YokosukaJapan
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Gan D, Ying J, Zhao Y. Prebiotic Chemistry: The Role of Trimetaphosphate in Prebiotic Chemical Evolution. Front Chem 2022; 10:941228. [PMID: 35910738 PMCID: PMC9326000 DOI: 10.3389/fchem.2022.941228] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/11/2022] [Accepted: 06/23/2022] [Indexed: 11/22/2022] Open
Abstract
Life’s origins have always been a scientific puzzle. Understanding the production of biomolecules is crucial for understanding the evolution of life on Earth. Numerous studies on trimetaphosphate have been conducted in the field of prebiotic chemistry. However, its role in prebiotic chemistry has been documented infrequently in the review literature. The goal of this thesis is to review the role of trimetaphosphate in the early Earth’s biomolecule synthesis and phosphorylation. Additionally, various trimetaphosphate-mediated reaction pathways are discussed, as well as the role of trimetaphosphate in prebiotic chemistry. Finally, in our opinion, interactions between biomolecules should be considered in prebiotic synthesis scenarios since this may result in some advances in subsequent research on this subject. The research establishes an essential and opportune foundation for an in-depth examination of the “mystery of life".
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Affiliation(s)
- Dingwei Gan
- Institute of Drug Discovery Technology, Ningbo University, Ningbo, China
- Qian Xuesen Collaborative Research Center of Astrochemistry and Space Life Sciences, Ningbo University, Ningbo, China
| | - Jianxi Ying
- Institute of Drug Discovery Technology, Ningbo University, Ningbo, China
- Qian Xuesen Collaborative Research Center of Astrochemistry and Space Life Sciences, Ningbo University, Ningbo, China
- *Correspondence: Jianxi Ying,
| | - Yufen Zhao
- Institute of Drug Discovery Technology, Ningbo University, Ningbo, China
- Qian Xuesen Collaborative Research Center of Astrochemistry and Space Life Sciences, Ningbo University, Ningbo, China
- Department of Chemical Biology, College of Chemistry and Chemical Engineering, Xiamen University, Xiamen, China
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Exceptional properties of hyper-resistant armor of a hydrothermal vent crab. Sci Rep 2022; 12:11816. [PMID: 35821397 PMCID: PMC9276715 DOI: 10.1038/s41598-022-15982-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/26/2022] [Accepted: 07/04/2022] [Indexed: 11/08/2022] Open
Abstract
Animals living in extreme environments, such as hydrothermal vents, would be expected to have evolved protective shells or exoskeletons to maintain homeostasis. The outer part of the exoskeleton of vent crabs (Austinograea sp.) in the Indian Ocean hydrothermal vent was one of the hardest (approximately 7 GPa) biological materials ever reported. To explore the exoskeletal characteristics of vent crabs which enable them to adapt to severe environments, a comparative analysis was conducted with the Asian paddle crab (Charybdis japonica) living in coastal areas. Nanoindentation, thermogravimetric analysis, scanning electron microscopy, energy dispersive x-ray analysis, and Raman spectroscopy were used to analyze the mechanical properties, thermal stability, structure, surface components, and the composition of compounds, respectively. Though both species have four-layered exoskeletons, the outermost layer of the vent crab, a nano-granular structure, was much thicker than that of the coastal crab. The proportions of aluminum and sulfur that constitute the epicuticle of the exoskeleton were higher in the vent crab than in the coastal crab. There was a lack of water or volatile substances, lots of CaCO3, and no carotenoid-based compounds in the exoskeleton of the vent crab. These might have improved the mechanical properties and thermal stability of the hydrothermal species.
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Deamer D, Cary F, Damer B. Urability: A Property of Planetary Bodies That Can Support an Origin of Life. ASTROBIOLOGY 2022; 22:889-900. [PMID: 35675644 DOI: 10.1089/ast.2021.0173] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/15/2023]
Abstract
The concept of habitability is now widely used to describe zones in a solar system in which planets with liquid water can sustain life. Because habitability does not explicitly incorporate the origin of life, this article proposes a new word-urability-which refers to the conditions that allow life to begin. The utility of the word is tested by applying it to combinations of multiple geophysical and geochemical factors that support plausible localized zones that are conducive to the chemical reactions and molecular assembly processes required for the origin of life. The concept of urable worlds, planetary bodies that can sustain an arising of life, is considered for bodies in our own solar system and exoplanets beyond.
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Affiliation(s)
- David Deamer
- Department of Biomolecular Engineering, University of California, Santa Cruz, Santa Cruz, California, USA
| | - Francesca Cary
- Hawai'i Institute of Geophysics and Planetology, University of Hawai'i at Mānoa, Honolulu, Hawaii, USA
| | - Bruce Damer
- Department of Biomolecular Engineering, University of California, Santa Cruz, Santa Cruz, California, USA
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Abstract
Microbial communities have essential roles in ocean ecology and planetary health. Microbes participate in nutrient cycles, remove huge quantities of carbon dioxide from the air and support ocean food webs. The taxonomic and functional diversity of the global ocean microbiome has been revealed by technological advances in sampling, DNA sequencing and bioinformatics. A better understanding of the ocean microbiome could underpin strategies to address environmental and societal challenges, including achievement of multiple Sustainable Development Goals way beyond SDG 14 'life below water'. We propose a set of priorities for understanding and protecting the ocean microbiome, which include delineating interactions between microbiota, sustainably applying resources from oceanic microorganisms and creating policy- and funder-friendly ocean education resources, and discuss how to achieve these ambitious goals.
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35
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Chen ZX, Yang L, Li Q, Zhu YJ, Zheng L. Complete genome sequence of Roseivivax marinus strain TCYB24 with quorum sensing system reveal the adaptive mechanism against deep-sea hydrothermal environment. Mar Genomics 2022; 63:100952. [DOI: 10.1016/j.margen.2022.100952] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/10/2022] [Revised: 04/13/2022] [Accepted: 04/13/2022] [Indexed: 10/18/2022]
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36
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MacKenzie SM, Neveu M, Davila AF, Lunine JI, Cable ML, Phillips-Lander CM, Eigenbrode JL, Waite JH, Craft KL, Hofgartner JD, McKay CP, Glein CR, Burton D, Kounaves SP, Mathies RA, Vance SD, Malaska MJ, Gold R, German CR, Soderlund KM, Willis P, Freissinet C, McEwen AS, Brucato JR, de Vera JPP, Hoehler TM, Heldmann J. Science Objectives for Flagship-Class Mission Concepts for the Search for Evidence of Life at Enceladus. ASTROBIOLOGY 2022; 22:685-712. [PMID: 35290745 PMCID: PMC9233532 DOI: 10.1089/ast.2020.2425] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/07/2023]
Abstract
Cassini revealed that Saturn's Moon Enceladus hosts a subsurface ocean that meets the accepted criteria for habitability with bio-essential elements and compounds, liquid water, and energy sources available in the environment. Whether these conditions are sufficiently abundant and collocated to support life remains unknown and cannot be determined from Cassini data. However, thanks to the plume of oceanic material emanating from Enceladus' south pole, a new mission to Enceladus could search for evidence of life without having to descend through kilometers of ice. In this article, we outline the science motivations for such a successor to Cassini, choosing the primary science goal to be determining whether Enceladus is inhabited and assuming a resource level equivalent to NASA's Flagship-class missions. We selected a set of potential biosignature measurements that are complementary and orthogonal to build a robust case for any life detection result. This result would be further informed by quantifications of the habitability of the environment through geochemical and geophysical investigations into the ocean and ice shell crust. This study demonstrates that Enceladus' plume offers an unparalleled opportunity for in situ exploration of an Ocean World and that the planetary science and astrobiology community is well equipped to take full advantage of it in the coming decades.
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Affiliation(s)
- Shannon M. MacKenzie
- Johns Hopkins University Applied Physics Laboratory, Laurel, Maryland, USA
- Address correspondence to: Shannon M. MacKenzie, Johns Hopkins University Applied Physics Laboratory, 11100 Johns Hopkins Road, Laurel, MD 20723, USA
| | - Marc Neveu
- Department of Astronomy, University of Maryland, College Park, Maryland, USA
- Solar System Exploration Division, NASA Goddard Space Flight Center, Greenbelt, Maryland, USA
| | - Alfonso F. Davila
- Division of Space Science and Astrobiology, NASA Ames Research Center, Moffett Field, California, USA
| | - Jonathan I. Lunine
- Department of Astronomy, Cornell University, Ithaca, New York, USA
- Carl Sagan Institute, Cornell University, Ithaca, New York, USA
| | - Morgan L. Cable
- Jet Propulsion Laboratory, California Institute of Technology, Pasadena, California, USA
| | | | - Jennifer L. Eigenbrode
- Solar System Exploration Division, NASA Goddard Space Flight Center, Greenbelt, Maryland, USA
| | - J. Hunter Waite
- Space Science and Engineering Division, Southwest Research Institute, San Antonio, Texas, USA
| | - Kate L. Craft
- Johns Hopkins University Applied Physics Laboratory, Laurel, Maryland, USA
| | - Jason D. Hofgartner
- Jet Propulsion Laboratory, California Institute of Technology, Pasadena, California, USA
| | - Chris P. McKay
- Division of Space Science and Astrobiology, NASA Ames Research Center, Moffett Field, California, USA
| | - Christopher R. Glein
- Space Science and Engineering Division, Southwest Research Institute, San Antonio, Texas, USA
| | - Dana Burton
- Department of Anthropology, George Washington University, Washington, District of Columbia, USA
| | | | - Richard A. Mathies
- Chemistry Department and Space Sciences Laboratory, University of California, Berkeley, Berkeley, California, USA
| | - Steven D. Vance
- Jet Propulsion Laboratory, California Institute of Technology, Pasadena, California, USA
| | - Michael J. Malaska
- Jet Propulsion Laboratory, California Institute of Technology, Pasadena, California, USA
| | - Robert Gold
- Johns Hopkins University Applied Physics Laboratory, Laurel, Maryland, USA
| | - Christopher R. German
- Department of Geology & Geophysics, Woods Hole Oceanographic Institution, Woods Hole, Massachusetts, USA
| | - Krista M. Soderlund
- Institute for Geophysics, Jackson School of Geosciences, The University of Texas at Austin, Austin, Texas, USA
| | - Peter Willis
- Jet Propulsion Laboratory, California Institute of Technology, Pasadena, California, USA
| | | | - Alfred S. McEwen
- Lunar and Planetary Lab, University of Arizona, Tucson, Arizona, USA
| | | | - Jean-Pierre P. de Vera
- Space Operations and Astronaut Training, MUSC, German Aerospace Center (DLR), Cologne, Germany
| | - Tori M. Hoehler
- Division of Space Science and Astrobiology, NASA Ames Research Center, Moffett Field, California, USA
| | - Jennifer Heldmann
- Division of Space Science and Astrobiology, NASA Ames Research Center, Moffett Field, California, USA
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Wang Y, Bi HY, Chen HG, Zheng PF, Zhou YL, Li JT. Metagenomics Reveals Dominant Unusual Sulfur Oxidizers Inhabiting Active Hydrothermal Chimneys From the Southwest Indian Ridge. Front Microbiol 2022; 13:861795. [PMID: 35694283 PMCID: PMC9174799 DOI: 10.3389/fmicb.2022.861795] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/25/2022] [Accepted: 04/12/2022] [Indexed: 11/25/2022] Open
Abstract
The deep-sea hydrothermal vents (DSHVs) in the Southwest Indian Ridge (SWIR) are formed by specific geological settings. However, the community structure and ecological function of the microbial inhabitants on the sulfide chimneys of active hydrothermal vents remain largely unknown. In this study, our analyses of 16S rRNA gene amplicons and 16S rRNA metagenomic reads showed the dominance of sulfur-oxidizing Ectothiorhodospiraceae, Thiomicrorhabdus, Sulfurimonas, and Sulfurovum on the wall of two active hydrothermal chimneys. Compared with the inactive hydrothermal sediments of SWIR, the active hydrothermal chimneys lacked sulfur-reducing bacteria. The metabolic potentials of the retrieved 82 metagenome-assembled genomes (MAGs) suggest that sulfur oxidation might be conducted by Thiohalomonadales (classified as Ectothiorhodospiraceae based on 16S rRNA gene amplicons), Sulfurovaceae, Hyphomicrobiaceae, Thiotrichaceae, Thiomicrospiraceae, and Rhodobacteraceae. For CO2 fixation, the Calvin-Benson-Bassham and reductive TCA pathways were employed by these bacteria. In Thiohalomonadales MAGs, we revealed putative phytochrome, carotenoid precursor, and squalene synthesis pathways, indicating a possible capacity of Thiohalomonadales in adaptation to dynamics redox conditions and the utilization of red light from the hot hydrothermal chimneys for photolithotrophic growth. This study, therefore, reveals unique microbiomes and their genomic features in the active hydrothermal chimneys of SWIR, which casts light on ecosystem establishment and development in hydrothermal fields and the deep biosphere.
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Affiliation(s)
- Yong Wang
- Institute for Marine Engineering, Shenzhen International Graduate School, Tsinghua University, Shenzhen, China
- *Correspondence: Yong Wang,
| | - Hong-Yu Bi
- Institute of Deep Sea Science and Engineering, Chinese Academy of Sciences, Sanya, China
| | - Hua-Guan Chen
- Institute of Deep Sea Science and Engineering, Chinese Academy of Sciences, Sanya, China
- College of Marine Sciences, University of Chinese Academy of Sciences, Beijing, China
| | - Peng-Fei Zheng
- Institute of Deep Sea Science and Engineering, Chinese Academy of Sciences, Sanya, China
| | - Ying-Li Zhou
- Institute of Deep Sea Science and Engineering, Chinese Academy of Sciences, Sanya, China
- College of Marine Sciences, University of Chinese Academy of Sciences, Beijing, China
| | - Jiang-Tao Li
- State Key Laboratory of Marine Geology, Tongji University, Shanghai, China
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Böhnke S, Perner M. Approaches to Unmask Functioning of the Uncultured Microbial Majority From Extreme Habitats on the Seafloor. Front Microbiol 2022; 13:845562. [PMID: 35422772 PMCID: PMC9002263 DOI: 10.3389/fmicb.2022.845562] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/30/2021] [Accepted: 03/07/2022] [Indexed: 11/30/2022] Open
Abstract
Researchers have recognized the potential of enzymes and metabolic pathways hidden among the unseen majority of Earth’s microorganisms for decades now. Most of the microbes expected to colonize the seafloor and its subsurface are currently uncultured. Thus, their ability and contribution to element cycling remain enigmatic. Given that the seafloor covers ∼70% of our planet, this amounts to an uncalled potential of unrecognized metabolic properties and interconnections catalyzed by this microbial dark matter. Consequently, a tremendous black box awaits discovery of novel enzymes, catalytic abilities, and metabolic properties in one of the largest habitats on Earth. This mini review summarizes the current knowledge of cultivation-dependent and -independent techniques applied to seafloor habitats to unravel the role of the microbial dark matter. It highlights the great potential that combining microbiological and biogeochemical data from in situ experiments with molecular tools has for providing a holistic understanding of bio-geo-coupling in seafloor habitats and uses hydrothermal vent systems as a case example.
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Affiliation(s)
- Stefanie Böhnke
- Geomicrobiology, GEOMAR Helmholtz Centre for Ocean Research Kiel, Kiel, Germany
| | - Mirjam Perner
- Geomicrobiology, GEOMAR Helmholtz Centre for Ocean Research Kiel, Kiel, Germany
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39
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Ren Y, Zhang G, Yang L, Hu Y, Nie X, Jiang Z, Wang D, Wu Z. Study on seafloor hydrothermal systems circulation flow and heat transfer characteristics. MATHEMATICAL BIOSCIENCES AND ENGINEERING : MBE 2022; 19:6186-6203. [PMID: 35603397 DOI: 10.3934/mbe.2022289] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/15/2023]
Abstract
In this work, the numerical simulation study of the hydrothermal flow and heat transfer process in the porous rock under 30 MPa pressure was developed. The flow and heat transfer characteristics of hydrothermal in rocks with different porosities are studied by changing the porosity of the rock. The simulation results show that the average flow velocity decreases and the average temperature increases when the porosity decreases. The velocity field and temperature field are coupled due to the nonlinear thermophysical properties of hydrothermal. The velocity field and temperature field have strongly interacted in the range of 400-450 ℃ and the effect of temperature on velocity is gradually diminishing outside the range. Most of the fluid will be "squeezed" into the crevice and the average velocity is almost three times the no-creviced case when a crevice is present. The existence of the crevice makes the total heat flux decrease from an overall perspective, and the crevice makes a large temperature gradient at the entrance and export of the crevice from a local perspective. These results provide theoretical support for the utilization of submarine hydrothermal fluid shallow circulation heat energy.
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Affiliation(s)
- Yi Ren
- College of Power and Energy Engineering, Harbin Engineering University, Harbin, MO 150001, China
| | - Guolei Zhang
- College of Power and Energy Engineering, Harbin Engineering University, Harbin, MO 150001, China
| | - Longbin Yang
- College of Power and Energy Engineering, Harbin Engineering University, Harbin, MO 150001, China
| | - Yanwei Hu
- School of Energy Science and Engineering, Harbin Institute of Technology, Harbin, MO 150001, China
| | - Xiaojing Nie
- College of Power and Energy Engineering, Harbin Engineering University, Harbin, MO 150001, China
| | - Zhibin Jiang
- College of Power and Energy Engineering, Harbin Engineering University, Harbin, MO 150001, China
| | - Dawei Wang
- College of Power and Energy Engineering, Harbin Engineering University, Harbin, MO 150001, China
| | - Zhifan Wu
- College of Power and Energy Engineering, Harbin Engineering University, Harbin, MO 150001, China
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40
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Kato N, Chen C, Watanabe HK, Yamamoto M, Shimomura M. The First Bopyrid Isopod from Hydrothermal Vents: Pleurocryptella shinkai sp. nov. (Isopoda: Epicaridea) Parasitizing Shinkaia crosnieri (Decapoda: Anomura). Zoolog Sci 2022; 39:293. [DOI: 10.2108/zs210117] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/09/2021] [Accepted: 02/09/2022] [Indexed: 11/17/2022]
Affiliation(s)
- Noeru Kato
- Yokohama City University, 22-2 Seto, Kanazawa-ku, Yokohama, Kanagawa 236-0027, Japan
| | - Chong Chen
- X-STAR, Japan Agency for Marine-Earth Science and Technology (JAMSTEC), 2–15 Natsushima-cho, Yokosuka, Kanagawa 237-0061, Japan
| | - Hiromi Kayama Watanabe
- X-STAR, Japan Agency for Marine-Earth Science and Technology (JAMSTEC), 2–15 Natsushima-cho, Yokosuka, Kanagawa 237-0061, Japan
| | - Masahiro Yamamoto
- Yokohama City University, 22-2 Seto, Kanazawa-ku, Yokohama, Kanagawa 236-0027, Japan
| | - Michitaka Shimomura
- Seto Marine Biological Laboratory, Field Science Education and Research Center, Kyoto University, 459 Shirahama, Nishimuro, Wakayama 649-2211, Japan
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41
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McKay LJ, Nigro OD, Dlakić M, Luttrell KM, Rusch DB, Fields MW, Inskeep WP. Sulfur cycling and host-virus interactions in Aquificales-dominated biofilms from Yellowstone's hottest ecosystems. THE ISME JOURNAL 2022; 16:842-855. [PMID: 34650231 PMCID: PMC8857204 DOI: 10.1038/s41396-021-01132-4] [Citation(s) in RCA: 7] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/10/2020] [Revised: 09/20/2021] [Accepted: 09/27/2021] [Indexed: 12/26/2022]
Abstract
Modern linkages among magmatic, geochemical, and geobiological processes provide clues about the importance of thermophiles in the origin of biogeochemical cycles. The aim of this study was to identify the primary chemoautotrophs and host-virus interactions involved in microbial colonization and biogeochemical cycling at sublacustrine, vapor-dominated vents that represent the hottest measured ecosystems in Yellowstone National Park (~140 °C). Filamentous microbial communities exposed to extreme thermal and geochemical gradients were sampled using a remotely operated vehicle and subjected to random metagenome sequencing and microscopic analyses. Sulfurihydrogenibium (phylum Aquificae) was the predominant lineage (up to 84% relative abundance) detected at vents that discharged high levels of dissolved H2, H2S, and CO2. Metabolic analyses indicated carbon fixation by Sulfurihydrogenibium spp. was powered by the oxidation of reduced sulfur and H2, which provides organic carbon for heterotrophic community members. Highly variable Sulfurihydrogenibium genomes suggested the importance of intra-population diversity under extreme environmental and viral pressures. Numerous lytic viruses (primarily unclassified taxa) were associated with diverse archaea and bacteria in the vent community. Five circular dsDNA uncultivated virus genomes (UViGs) of ~40 kbp length were linked to the Sulfurihydrogenibium metagenome-assembled genome (MAG) by CRISPR spacer matches. Four UViGs contained consistent genome architecture and formed a monophyletic cluster with the recently proposed Pyrovirus genus within the Caudovirales. Sulfurihydrogenibium spp. also contained CRISPR arrays linked to plasmid DNA with genes for a novel type IV filament system and a highly expressed β-barrel porin. A diverse suite of transcribed secretion systems was consistent with direct microscopic analyses, which revealed an extensive extracellular matrix likely critical to community structure and function. We hypothesize these attributes are fundamental to the establishment and survival of microbial communities in highly turbulent, extreme-gradient environments.
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Affiliation(s)
- Luke J. McKay
- grid.41891.350000 0001 2156 6108Department of Land Resources & Environmental Sciences, Montana State University, Bozeman, MT 59717 USA ,grid.41891.350000 0001 2156 6108Thermal Biology Institute, Montana State University, Bozeman, MT 59717 USA ,grid.41891.350000 0001 2156 6108Center for Biofilm Engineering, Montana State University, Bozeman, MT 59717 USA
| | - Olivia D. Nigro
- grid.256872.c0000 0000 8741 0387Department of Natural Science, Hawaii Pacific University, Honolulu, HI 96813 USA
| | - Mensur Dlakić
- grid.41891.350000 0001 2156 6108Department of Microbiology & Cell Biology, Montana State University, Bozeman, MT 59717 USA
| | - Karen M. Luttrell
- grid.64337.350000 0001 0662 7451Department of Geology & Geophysics, Louisiana State University, Baton Rouge, LA 70803 USA
| | - Douglas B. Rusch
- grid.411377.70000 0001 0790 959XCenter for Genomics and Bioinformatics, Indiana University, Bloomington, IN 47405 USA
| | - Matthew W. Fields
- grid.41891.350000 0001 2156 6108Thermal Biology Institute, Montana State University, Bozeman, MT 59717 USA ,grid.41891.350000 0001 2156 6108Department of Microbiology & Cell Biology, Montana State University, Bozeman, MT 59717 USA
| | - William P. Inskeep
- grid.41891.350000 0001 2156 6108Department of Land Resources & Environmental Sciences, Montana State University, Bozeman, MT 59717 USA ,grid.41891.350000 0001 2156 6108Thermal Biology Institute, Montana State University, Bozeman, MT 59717 USA
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Kochetkova TV, Podosokorskaya OA, Elcheninov AG, Kublanov IV. Diversity of Thermophilic Prokaryotes Inhabiting Russian Natural Hot Springs. Microbiology (Reading) 2022. [DOI: 10.1134/s0026261722010064] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022] Open
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Sakellariadou F, Gonzalez FJ, Hein JR, Rincón-Tomás B, Arvanitidis N, Kuhn T. Seabed mining and blue growth: exploring the potential of marine mineral deposits as a sustainable source of rare earth elements (MaREEs) (IUPAC Technical Report). PURE APPL CHEM 2022. [DOI: 10.1515/pac-2021-0325] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
Abstract
Abstract
The expected growth of the global economy and the projected rise in world population call for a greatly increased supply of materials critical for implementing clean technologies, such as rare earth elements (REEs) and other rare metals. Because the demand for critical metals is increasing and land-based mineral deposits are being depleted, seafloor resources are seen as the next frontier for mineral exploration and extraction. Marine mineral deposits with a great resource potential for transition, rare, and critical metals include mainly deep-sea mineral deposits, such as polymetallic sulfides, polymetallic nodules, cobalt-rich crusts, phosphorites, and rare earth element-rich muds. Major areas with economic interest for seabed mineral exploration and mining are the following: nodules in the Penrhyn Basin-Cook Islands Exclusive Economic Zone (EEZ), the Clarion–Clipperton nodule Zone, Peru Basin nodules, and the Central Indian Ocean Basin; seafloor massive sulfide deposits in the exclusive economic zones of Papua New Guinea, Japan, and New Zealand as well as the Mid-Atlantic Ridge and the three Indian Ocean spreading ridges; cobalt-rich crusts in the Pacific Prime Crust Zone and the Canary Islands Seamounts and the Rio Grande Rise in the Atlantic Ocean; and the rare earth element-rich deep-sea muds around Minamitorishima Island in the equatorial North Pacific. In addition, zones for marine phosphorites exploration are located in Chatham Rise, offshore Baja California, and on the shelf off Namibia. Moreover, shallow-water resources, like placer deposits, represent another marine source for many critical minerals, metals, and gems. The main concerns of deep-sea mining are related to its environmental impacts. Ecological impacts of rare earth element mining on deep-sea ecosystems are still poorly evaluated. Furthermore, marine mining may cause conflicts with various stakeholders such as fisheries, communications cable owners, offshore wind farms, and tourism. The global ocean is an immense source of food, energy, raw materials, clean water, and ecosystem services and suffers seriously by multiple stressors from anthropogenic sources. The development of a blue economy strategy needs a better knowledge of the environmental impacts. By protecting vulnerable areas, applying new technologies for deep-sea mineral exploration and mining, marine spatial planning, and a regulatory framework for minerals extraction, we may achieve sustainable management and use of our oceans.
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Affiliation(s)
- Fani Sakellariadou
- Department of Maritime Studies , University of Piraeus , Piraeus , Greece
| | | | - James R. Hein
- United States Geological Survey, Pacific Coastal and Marine Science Center , Santa Cruz , CA , USA
| | - Blanca Rincón-Tomás
- Institute for General Microbiology, Christian-Albrechts-University Kiel , Kiel , Germany
| | | | - Thomas Kuhn
- Federal Institute for Geosciences and Natural Resources , Hannover , Germany
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Pan J, Xu W, Zhou Z, Shao Z, Dong C, Liu L, Luo Z, Li M. Genome-resolved evidence for functionally redundant communities and novel nitrogen fixers in the deyin-1 hydrothermal field, Mid-Atlantic Ridge. MICROBIOME 2022; 10:8. [PMID: 35045876 PMCID: PMC8767757 DOI: 10.1186/s40168-021-01202-x] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/09/2021] [Accepted: 11/24/2021] [Indexed: 05/10/2023]
Abstract
BACKGROUND Deep-sea hydrothermal vents represent unique ecosystems that redefine our understanding of the limits of life. They are widely distributed in deep oceans and typically form along mid-ocean ridges. To date, the hydrothermal systems in the Mid-Atlantic Ridge south of 14°S remain barely explored, limiting our understanding of the microbial community in this distinct ecosystem. The Deyin-1 is a newly discovered hydrothermal field in this area. By applying the metagenomic analysis, we aim at gaining much knowledge of the biodiversity and functional capability of microbial community inhabiting this field. RESULTS In the current study, 219 metagenomic assembled genomes (MAGs) were reconstructed, unveiling a diverse and variable community dominated by Bacteroidetes, Nitrospirae, Alpha-, Delta-, and Gammaproteobacteria in the active and inactive chimney samples as well as hydrothermal oxide samples. Most of these major taxa were potentially capable of using reduced sulfur and hydrogen as primary energy sources. Many members within the major taxa exhibited potentials of metabolic plasticity by possessing multiple energy metabolic pathways. Among these samples, different bacteria were found to be the major players of the same metabolic pathways, further supporting the variable and functionally redundant community in situ. In addition, a high proportion of MAGs harbored the genes of carbon fixation and extracellular carbohydrate-active enzymes, suggesting that both heterotrophic and autotrophic strategies could be essential for their survival. Notably, for the first time, the genus Candidatus Magnetobacterium was shown to potentially fix nitrogen, indicating its important role in the nitrogen cycle of inactive chimneys. Moreover, the metabolic plasticity of microbes, diverse and variable community composition, and functional redundancy of microbial communities may represent the adaptation strategies to the geochemically complex and fluctuating environmental conditions in deep-sea hydrothermal fields. CONCLUSIONS This represents the first assembled-genome-based investigation into the microbial community and metabolism of a hydrothermal field in the Mid-Atlantic Ridge south of 14°S. The findings revealed that a high proportion of microbes could benefit from simultaneous use of heterotrophic and autotrophic strategies in situ. It also presented novel members of potential diazotrophs and highlighted the metabolic plasticity and functional redundancy across deep-sea hydrothermal systems. Video abstract.
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Affiliation(s)
- Jie Pan
- Archaeal Biology Center, Institute for Advanced Study, Shenzhen University, Shenzhen, Guangdong People’s Republic of China
| | - Wei Xu
- Key Laboratory of Marine Biogenetic Resources, Third Institute of Oceanography, Ministry of Natural Resources, Fujian Xiamen, People’s Republic of China
| | - Zhichao Zhou
- Archaeal Biology Center, Institute for Advanced Study, Shenzhen University, Shenzhen, Guangdong People’s Republic of China
- Department of Bacteriology, University of Wisconsin-Madison, Madison, WI 53706 USA
| | - Zongze Shao
- Key Laboratory of Marine Biogenetic Resources, Third Institute of Oceanography, Ministry of Natural Resources, Fujian Xiamen, People’s Republic of China
| | - Chunming Dong
- Key Laboratory of Marine Biogenetic Resources, Third Institute of Oceanography, Ministry of Natural Resources, Fujian Xiamen, People’s Republic of China
| | - Lirui Liu
- Archaeal Biology Center, Institute for Advanced Study, Shenzhen University, Shenzhen, Guangdong People’s Republic of China
| | - Zhuhua Luo
- Key Laboratory of Marine Biogenetic Resources, Third Institute of Oceanography, Ministry of Natural Resources, Fujian Xiamen, People’s Republic of China
- School of Marine Sciences, Nanjing University of Information Science & Technology, 210044 Nanjing, People’s Republic of China
| | - Meng Li
- Archaeal Biology Center, Institute for Advanced Study, Shenzhen University, Shenzhen, Guangdong People’s Republic of China
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Sun Y, Wang M, Zhong Z, Chen H, Wang H, Zhou L, Cao L, Fu L, Zhang H, Lian C, Sun S, Li C. Adaption to hydrogen sulfide-rich environments: Strategies for active detoxification in deep-sea symbiotic mussels, Gigantidas platifrons. THE SCIENCE OF THE TOTAL ENVIRONMENT 2022; 804:150054. [PMID: 34509839 DOI: 10.1016/j.scitotenv.2021.150054] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/17/2021] [Revised: 08/10/2021] [Accepted: 08/27/2021] [Indexed: 05/27/2023]
Abstract
The deep-sea mussel Gigantidas platifrons is a representative species that relies on nutrition provided by chemoautotrophic endosymbiotic bacteria to survive in both hydrothermal vent and methane seep environments. However, vent and seep habitats have distinct geochemical features, with vents being more harsh than seeps because of abundant toxic chemical substances, particularly hydrogen sulfide (H2S). Until now, the adaptive strategies of G. platifrons in a heterogeneous environment and their sulfide detoxification mechanisms are still unclear. Herein, we conducted 16S rDNA sequencing and metatranscriptome sequencing of G. platifrons collected from a methane seep at Formosa Ridge in the South China Sea and a hydrothermal vent at Iheya North Knoll in the Mid-Okinawa Trough to provide a model for understanding environmental adaption and sulfide detoxification mechanisms, and a three-day laboratory controlled Na2S stress experiment to test the transcriptomic responses under sulfide stress. The results revealed the active detoxification of sulfide in G. platifrons gills. First, epibiotic Campylobacterota bacteria were more abundant in vent mussels and contributed to environmental adaptation by active oxidation of extracellular H2S. Notably, a key sulfide-oxidizing gene, sulfide:quinone oxidoreductase (sqr), derived from the methanotrophic endosymbiont, was significantly upregulated in vent mussels, indicating the oxidization of intracellular sulfide by the endosymbiont. In addition, transcriptomic comparison further suggested that genes involved in oxidative phosphorylation and mitochondrial sulfide oxidization pathway played important roles in the sulfide tolerance of the host mussels. Moreover, transcriptomic analysis of Na2S stressed mussels confirmed the upregulation of oxidative phosphorylation and sulfide oxidization genes in response to sulfide exposure. Overall, this study provided a systematic transcriptional analysis of both the active bacterial community members and the host mussels, suggesting that the epibionts, endosymbionts, and mussel host collaborated on sulfide detoxification from extracellular to intracellular space to adapt to harsh H2S-rich environments.
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Affiliation(s)
- Yan Sun
- CAS Key Laboratory of Marine Ecology and Environmental Sciences, and Center of Deep Sea Research, Institute of Oceanology, Chinese Academy of Sciences, Qingdao 266071, China; Laboratory for Marine Ecology and Environmental Science, Qingdao National Laboratory for Marine Science and Technology, Qingdao 266071, China; Center for Ocean Mega-Science, Chinese Academy of Sciences, Qingdao 266071, China
| | - Minxiao Wang
- CAS Key Laboratory of Marine Ecology and Environmental Sciences, and Center of Deep Sea Research, Institute of Oceanology, Chinese Academy of Sciences, Qingdao 266071, China; Laboratory for Marine Ecology and Environmental Science, Qingdao National Laboratory for Marine Science and Technology, Qingdao 266071, China; Center for Ocean Mega-Science, Chinese Academy of Sciences, Qingdao 266071, China
| | - Zhaoshan Zhong
- CAS Key Laboratory of Marine Ecology and Environmental Sciences, and Center of Deep Sea Research, Institute of Oceanology, Chinese Academy of Sciences, Qingdao 266071, China; Laboratory for Marine Ecology and Environmental Science, Qingdao National Laboratory for Marine Science and Technology, Qingdao 266071, China; Center for Ocean Mega-Science, Chinese Academy of Sciences, Qingdao 266071, China
| | - Hao Chen
- CAS Key Laboratory of Marine Ecology and Environmental Sciences, and Center of Deep Sea Research, Institute of Oceanology, Chinese Academy of Sciences, Qingdao 266071, China; Laboratory for Marine Ecology and Environmental Science, Qingdao National Laboratory for Marine Science and Technology, Qingdao 266071, China; Center for Ocean Mega-Science, Chinese Academy of Sciences, Qingdao 266071, China
| | - Hao Wang
- CAS Key Laboratory of Marine Ecology and Environmental Sciences, and Center of Deep Sea Research, Institute of Oceanology, Chinese Academy of Sciences, Qingdao 266071, China; Laboratory for Marine Ecology and Environmental Science, Qingdao National Laboratory for Marine Science and Technology, Qingdao 266071, China; Center for Ocean Mega-Science, Chinese Academy of Sciences, Qingdao 266071, China
| | - Li Zhou
- CAS Key Laboratory of Marine Ecology and Environmental Sciences, and Center of Deep Sea Research, Institute of Oceanology, Chinese Academy of Sciences, Qingdao 266071, China; Laboratory for Marine Ecology and Environmental Science, Qingdao National Laboratory for Marine Science and Technology, Qingdao 266071, China; Center for Ocean Mega-Science, Chinese Academy of Sciences, Qingdao 266071, China
| | - Lei Cao
- CAS Key Laboratory of Marine Ecology and Environmental Sciences, and Center of Deep Sea Research, Institute of Oceanology, Chinese Academy of Sciences, Qingdao 266071, China; Laboratory for Marine Ecology and Environmental Science, Qingdao National Laboratory for Marine Science and Technology, Qingdao 266071, China; Center for Ocean Mega-Science, Chinese Academy of Sciences, Qingdao 266071, China
| | - Lulu Fu
- CAS Key Laboratory of Marine Ecology and Environmental Sciences, and Center of Deep Sea Research, Institute of Oceanology, Chinese Academy of Sciences, Qingdao 266071, China; Laboratory for Marine Ecology and Environmental Science, Qingdao National Laboratory for Marine Science and Technology, Qingdao 266071, China; Center for Ocean Mega-Science, Chinese Academy of Sciences, Qingdao 266071, China
| | - Huan Zhang
- CAS Key Laboratory of Marine Ecology and Environmental Sciences, and Center of Deep Sea Research, Institute of Oceanology, Chinese Academy of Sciences, Qingdao 266071, China; Laboratory for Marine Ecology and Environmental Science, Qingdao National Laboratory for Marine Science and Technology, Qingdao 266071, China; Center for Ocean Mega-Science, Chinese Academy of Sciences, Qingdao 266071, China
| | - Chao Lian
- CAS Key Laboratory of Marine Ecology and Environmental Sciences, and Center of Deep Sea Research, Institute of Oceanology, Chinese Academy of Sciences, Qingdao 266071, China; Laboratory for Marine Ecology and Environmental Science, Qingdao National Laboratory for Marine Science and Technology, Qingdao 266071, China; Center for Ocean Mega-Science, Chinese Academy of Sciences, Qingdao 266071, China
| | - Song Sun
- CAS Key Laboratory of Marine Ecology and Environmental Sciences, and Center of Deep Sea Research, Institute of Oceanology, Chinese Academy of Sciences, Qingdao 266071, China; Laboratory for Marine Ecology and Environmental Science, Qingdao National Laboratory for Marine Science and Technology, Qingdao 266071, China; Center for Ocean Mega-Science, Chinese Academy of Sciences, Qingdao 266071, China; University of Chinese Academy of Sciences, Beijing 10049, China.
| | - Chaolun Li
- CAS Key Laboratory of Marine Ecology and Environmental Sciences, and Center of Deep Sea Research, Institute of Oceanology, Chinese Academy of Sciences, Qingdao 266071, China; Laboratory for Marine Ecology and Environmental Science, Qingdao National Laboratory for Marine Science and Technology, Qingdao 266071, China; Center for Ocean Mega-Science, Chinese Academy of Sciences, Qingdao 266071, China; University of Chinese Academy of Sciences, Beijing 10049, China.
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Takamiya H, Kouduka M, Suzuki Y. The Deep Rocky Biosphere: New Geomicrobiological Insights and Prospects. Front Microbiol 2021; 12:785743. [PMID: 34917063 PMCID: PMC8670094 DOI: 10.3389/fmicb.2021.785743] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/29/2021] [Accepted: 11/08/2021] [Indexed: 12/02/2022] Open
Abstract
Rocks that react with liquid water are widespread but spatiotemporally limited throughout the solar system, except for Earth. Rock-forming minerals with high iron content and accessory minerals with high amounts of radioactive elements are essential to support rock-hosted microbial life by supplying organics, molecular hydrogen, and/or oxidants. Recent technological advances have broadened our understanding of the rocky biosphere, where microbial inhabitation appears to be difficult without nutrient and energy inputs from minerals. In particular, microbial proliferation in igneous rock basements has been revealed using innovative geomicrobiological techniques. These recent findings have dramatically changed our perspective on the nature and the extent of microbial life in the rocky biosphere, microbial interactions with minerals, and the influence of external factors on habitability. This study aimed to gather information from scientific and/or technological innovations, such as omics-based and single-cell level characterizations, targeting deep rocky habitats of organisms with minimal dependence on photosynthesis. By synthesizing pieces of rock-hosted life, we can explore the evo-phylogeny and ecophysiology of microbial life on Earth and the life’s potential on other planetary bodies.
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Affiliation(s)
- Hinako Takamiya
- Department of Earth and Planetary Science, The University of Tokyo, Bunkyo, Japan
| | - Mariko Kouduka
- Department of Earth and Planetary Science, The University of Tokyo, Bunkyo, Japan
| | - Yohey Suzuki
- Department of Earth and Planetary Science, The University of Tokyo, Bunkyo, Japan
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de Oliveira AL, Mitchell J, Girguis P, Bright M. Novel insights on obligate symbiont lifestyle and adaptation to chemosynthetic environment as revealed by the giant tubeworm genome. Mol Biol Evol 2021; 39:6454105. [PMID: 34893862 PMCID: PMC8789280 DOI: 10.1093/molbev/msab347] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022] Open
Abstract
The mutualism between the giant tubeworm Riftia pachyptila and its endosymbiont Candidatus Endoriftia persephone has been extensively researched over the past 40 years. However, the lack of the host whole genome information has impeded the full comprehension of the genotype/phenotype interface in Riftia. Here we described the high-quality draft genome of Riftia, its complete mitogenome, and tissue-specific transcriptomic data. The Riftia genome presents signs of reductive evolution, with gene family contractions exceeding expansions. Expanded gene families are related to sulphur metabolism, detoxification, anti-oxidative stress, oxygen transport, immune system, and lysosomal digestion, reflecting evolutionary adaptations to the vent environment and endosymbiosis. Despite the derived body plan, the developmental gene repertoire in the gutless tubeworm is extremely conserved with the presence of a near intact and complete Hox cluster. Gene expression analyses establishes that the trophosome is a multi-functional organ marked by intracellular digestion of endosymbionts, storage of excretory products and haematopoietic functions. Overall, the plume and gonad tissues both in contact to the environment harbour highly expressed genes involved with cell cycle, programmed cell death, and immunity indicating a high cell turnover and defence mechanisms against pathogens. We posit that the innate immune system plays a more prominent role into the establishment of the symbiosis during the infection in the larval stage, rather than maintaining the symbiostasis in the trophosome. This genome bridges four decades of physiological research in Riftia, whilst simultaneously provides new insights into the development, whole organism functions and evolution in the giant tubeworm.
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Affiliation(s)
| | - Jessica Mitchell
- Department of Organismic and Evolutionary Biology, Harvard University, Cambridge, MA, USA
| | - Peter Girguis
- Department of Organismic and Evolutionary Biology, Harvard University, Cambridge, MA, USA
| | - Monika Bright
- Department of Functional and Evolutionary Ecology, University of Vienna, Austria
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Chen C, Zhou Y, Watanabe HK, Zhang R, Wang C. Neolepetopsid true limpets (Gastropoda: Patellogastropoda) from Indian Ocean hot vents shed light on relationships among genera. Zool J Linn Soc 2021. [DOI: 10.1093/zoolinnean/zlab081] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022]
Abstract
Abstract
Neolepetopsidae is a family of true limpets restricted to deep-sea chemosynthesis-based ecosystems. It is a small and little-studied family with about a dozen species in three genera, namely Eulepetopsis, Neolepetopsis and Paralepetopsis, and all named species were from the Pacific or Atlantic Oceans. Here, we describe three new species from Indian Ocean vents, namely Eulepetopsis crystallina sp. nov. found across three ridges,ŠNeolepetopsis ardua sp. nov. from the Southwest Indian Ridge and Neolepetopsis prismatica sp. nov. from the Carlsberg Ridge. Given that Neolepetopsis appears to specialize on inactive sulfide deposits, the apparent wider distribution of E. crystallina is probably attributable to bias in sampling effort at inactive chimneys. The molecular phylogeny of Patellogastropoda, reconstructed using the COI gene, supported the monophyly of Neolepetopsidae. These are the first molecular data available for Neolepetopsis, confirming that the three genera are genetically distinct. Eulepetopsis appears to be adapted to active vents, and its derived position compared with Paralepetopsis indicates a possible ‘stepping-stone’ evolutionary pathway from seeps and organic falls to vents. Our results provide new insights into this enigmatic family and highlight the importance of surveying the vent periphery, especially given that inactive vents are being eyed as a replacement for active ones in deep-sea mining.
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Affiliation(s)
- Chong Chen
- X-STAR, Japan Agency for Marine-Earth Science and Technology (JAMSTEC), 2–15 Natsushima-cho, Yokosuka 237-0061, Japan
| | - Yadong Zhou
- Key Laboratory of Marine Ecosystem Dynamics, Second Institute of Oceanography, Ministry of Natural Resources, Hangzhou, China
- Southern Marine Science and Engineering Guangdong Laboratory (Zhuhai), Zhuhai 519082, China
| | - Hiromi Kayama Watanabe
- X-STAR, Japan Agency for Marine-Earth Science and Technology (JAMSTEC), 2–15 Natsushima-cho, Yokosuka 237-0061, Japan
| | - Ruiyan Zhang
- Key Laboratory of Marine Ecosystem Dynamics, Second Institute of Oceanography, Ministry of Natural Resources, Hangzhou, China
- School of Oceanography, Shanghai Jiao Tong University, Shanghai, China
| | - Chunsheng Wang
- Key Laboratory of Marine Ecosystem Dynamics, Second Institute of Oceanography, Ministry of Natural Resources, Hangzhou, China
- Southern Marine Science and Engineering Guangdong Laboratory (Zhuhai), Zhuhai 519082, China
- School of Oceanography, Shanghai Jiao Tong University, Shanghai, China
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Zhou K, Qian P, Zhang T, Xu Y, Zhang R. Unique phage-bacterium interplay in sponge holobionts from the southern Okinawa Trough hydrothermal vent. ENVIRONMENTAL MICROBIOLOGY REPORTS 2021; 13:675-683. [PMID: 34128329 PMCID: PMC8518922 DOI: 10.1111/1758-2229.12979] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/16/2020] [Revised: 05/17/2021] [Accepted: 05/19/2021] [Indexed: 05/09/2023]
Abstract
Deep-sea hydrothermal vents harbour diverse and abundant animals and their symbiotic microorganisms, which together comprise holobionts. The interplay between bacterial members of holobionts and their viruses (phages) is important for maintaining these symbiotic systems; however, phage-bacterium interactions in deep-sea vent holobionts are not well understood. Marine sponges serve as good models for such studies and are used to unveil phage-bacterium interplay via metagenomic analysis. In three demosponges from deep-sea hydrothermal vent fields in the southern Okinawa Trough, the genomes of a diverse array of symbiotic bacteria, including 10 bacterial phyla, were found to lack intact prophages. Genes related to diverse anti-viral defence systems, for example, the restriction-modification and toxin-antitoxin systems, were abundant in the bacterial communities. We also detected phage genes that could complement or compensate host bacterial metabolism, indicating beneficial roles of phage infection. Our findings provide insight into phage-bacterium interplay in sponges from deep-sea hydrothermal vents.
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Affiliation(s)
- Kun Zhou
- Shenzhen University‐HKUST Joint Marine Science Ph.D. ProgramShenzhen UniversityShenzhen518060China
- Department of Ocean Science and Hong Kong Branch of the Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou)Hong Kong University of Science and TechnologyHong KongChina
| | - Pei‐Yuan Qian
- Department of Ocean Science and Hong Kong Branch of the Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou)Hong Kong University of Science and TechnologyHong KongChina
| | - Ting Zhang
- State Key Laboratory of Marine Environmental Science, College of Ocean and Earth SciencesXiamen University (Xiang'an)Xiamen361102China
| | - Ying Xu
- Shenzhen University‐HKUST Joint Marine Science Ph.D. ProgramShenzhen UniversityShenzhen518060China
- Shenzhen Key Laboratory of Marine Bioresource & Eco‐environmental Science, College of Life Sciences and OceanographyShenzhen UniversityShenzhen518060China
| | - Rui Zhang
- State Key Laboratory of Marine Environmental Science, College of Ocean and Earth SciencesXiamen University (Xiang'an)Xiamen361102China
- Southern Marine Science and Engineering Guangdong Laboratory (Zhuhai)ZhuhaiChina
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Ge M, Li L, Zhang X, Luan Z, Du Z, Xi S, Yan J. A Piecewise Model for In Situ Raman Measurement of the Chlorinity of Deep-Sea High-Temperature Hydrothermal Fluids. APPLIED SPECTROSCOPY 2021; 75:1178-1188. [PMID: 33599538 DOI: 10.1177/0003702821999114] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/12/2023]
Abstract
The chlorinity of deep-sea hydrothermal fluids, representing one of the crucial deep-sea hydrothermal indicators, indicates the degree of deep phase separation of hydrothermal fluids and water/rock reactions. However, accurately measuring the chlorinity of high-temperature hydrothermal fluids is still a significant challenge. In this paper, a piecewise chlorinity model to measure the chlorinity of high-temperature hydrothermal fluids was developed based on the OH stretching band of water, exhibiting an accuracy of 96.20%. The peak position, peak area ratio, and F value were selected to establish the chlorinity piecewise calibration model within the temperature ranges of 0-50 ℃, 50-200 ℃, and 200-300 ℃. Compared with that of the chlorinity calibration model built based on a single parameter, the accuracy of this piecewise model increased by approximately 4.83-12.33%. This chlorinity calibration model was applied to determine the concentrations of Cl for high-temperature hydrothermal fluids in the Okinawa Trough hydrothermal field.
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Affiliation(s)
- Meng Ge
- CAS Key Laboratory of Marine Geology and Environment & Center of Deep Sea Research, Institute of Oceanology, Chinese Academy of Sciences, Qingdao, China
- Laboratory for Marine Geology, Qingdao National Laboratory for Marine Science and Technology, Qingdao, China
- College of Earth and Planetary Sciences, University of Chinese Academy of Sciences, Beijing, China
- Center for Ocean Mega-Science, Chinese Academy of Sciences, Qingdao, China
| | - Lianfu Li
- CAS Key Laboratory of Marine Geology and Environment & Center of Deep Sea Research, Institute of Oceanology, Chinese Academy of Sciences, Qingdao, China
- Laboratory for Marine Geology, Qingdao National Laboratory for Marine Science and Technology, Qingdao, China
- College of Earth and Planetary Sciences, University of Chinese Academy of Sciences, Beijing, China
- Center for Ocean Mega-Science, Chinese Academy of Sciences, Qingdao, China
| | - Xin Zhang
- CAS Key Laboratory of Marine Geology and Environment & Center of Deep Sea Research, Institute of Oceanology, Chinese Academy of Sciences, Qingdao, China
- Laboratory for Marine Geology, Qingdao National Laboratory for Marine Science and Technology, Qingdao, China
- College of Earth and Planetary Sciences, University of Chinese Academy of Sciences, Beijing, China
- Center for Ocean Mega-Science, Chinese Academy of Sciences, Qingdao, China
| | - Zhendong Luan
- CAS Key Laboratory of Marine Geology and Environment & Center of Deep Sea Research, Institute of Oceanology, Chinese Academy of Sciences, Qingdao, China
- Laboratory for Marine Geology, Qingdao National Laboratory for Marine Science and Technology, Qingdao, China
- Center for Ocean Mega-Science, Chinese Academy of Sciences, Qingdao, China
| | - Zengfeng Du
- CAS Key Laboratory of Marine Geology and Environment & Center of Deep Sea Research, Institute of Oceanology, Chinese Academy of Sciences, Qingdao, China
- Center for Ocean Mega-Science, Chinese Academy of Sciences, Qingdao, China
| | - Shichuan Xi
- CAS Key Laboratory of Marine Geology and Environment & Center of Deep Sea Research, Institute of Oceanology, Chinese Academy of Sciences, Qingdao, China
- College of Earth and Planetary Sciences, University of Chinese Academy of Sciences, Beijing, China
- Center for Ocean Mega-Science, Chinese Academy of Sciences, Qingdao, China
| | - Jun Yan
- CAS Key Laboratory of Marine Geology and Environment & Center of Deep Sea Research, Institute of Oceanology, Chinese Academy of Sciences, Qingdao, China
- Center for Ocean Mega-Science, Chinese Academy of Sciences, Qingdao, China
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