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Archer E, Arneth A, Leadley P, Mori A, Obura D, Smith P. Achieving the Global Biodiversity Framework Under Climate Change. GLOBAL CHANGE BIOLOGY 2025; 31:e70249. [PMID: 40421550 DOI: 10.1111/gcb.70249] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/14/2024] [Revised: 03/11/2025] [Accepted: 04/29/2025] [Indexed: 05/28/2025]
Abstract
We have committed to ambitious targets under the Global Biodiversity Framework, but projected climate change makes the achievement of many of these targets extremely difficult and will effectively require a significant rethinking in how to achieve multiple targets. In this Opinion, we have chosen to focus on selected targets, considering how their achievement is likely to be compromised by climate change but also what the possibility of real response options might be. We focus on restoration (Target 2), spatial planning and integration (Targets 1, 2, 3 and 10), sustainable use and sustainable benefits to people (Targets 5, 9 and 10) and, finally, equity and social justice (Targets 13, 20-23 and Goal C). Now more than ever, the window for effective action on climate change and biodiversity is closing, requiring rapid and, most importantly, collective action.
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Affiliation(s)
- Emma Archer
- Department of Geography, Geoinformatics and Meteorology, University of Pretoria, Pretoria, South Africa
| | - Almut Arneth
- Karlsruhe Institute of Technology, IMKIFU, Garmisch-Partenkirchen, Germany
| | - Paul Leadley
- Laboratoire D'ecologie Systématique Evolution, Université Paris-Saclay, CNRS, AgroParisTech, Gif-sur-Yvette, France
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Emery AM, Rabone M, Landeryou T, Allan F, Rollinson D. The research contribution of the Schistosomiasis Collection at the Natural History Museum (SCAN): highlights, challenges and future directions. Infect Dis Poverty 2025; 14:29. [PMID: 40251693 PMCID: PMC12007343 DOI: 10.1186/s40249-025-01302-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/16/2025] [Accepted: 04/06/2025] [Indexed: 04/20/2025] Open
Abstract
BACKGROUND The Schistosomiasis Collection at the Natural History Museum (SCAN) is a repository of schistosomiasis-related specimens, the development of which was funded by the Wellcome Trust between 2011 and 2021. With a view to facilitating research by improving access to genetically diverse material, SCAN was built from legacy research collections of schistosomiasis-related specimens amassed over decades, with more recent collections made through partnership with large field-based projects. METHODS We identified the literature associated with SCAN from 2012 until 2024, using both database searches (search terms: SCAN, the schistosomiasis collection at the NHM and schistosomiasis) and citations of the publication which originally laid out the scope of the SCAN Collection. Studies were included if the SCAN publication was cited, and/or if the SCAN Collection was utilised in the work. Data extracted included year of publication, authors, whether and how SCAN was used in the work, and type of specimens used. RESULTS The literature includes 88 published works, demonstrating the utility of large field-based collections in supporting research. The collection comprises around half a million larval schistosomes originating from the field, with approximately 3000 specimen lots of lab-passaged adult parasites stored in liquid nitrogen. The Collection includes 11 schistosome species, the majority being the human pathogens Schistosoma haematobium and S. mansoni, while also including many livestock-associated species. Genome analysis of S. haematobium and S. guineensis samples indicate historical introgression or ongoing hybridisation. In order of representation, the collection includes S. haematobium (> 19,000 larval forms and eggs, and 550 specimen lots of laboratory passaged adult worms), S. mansoni, S. japonicum, S. bovis, S. curassoni, S. mattheei, S. rodhaini and S. guineensis, with S. intercalatum, S. margrebowiei and S. spindale represented only by laboratory-passaged isolates in liquid nitrogen. SCAN also includes around 210,000 snails, with the collection as a whole encompassing 27 countries. CONCLUSIONS Improvements in DNA sequencing techniques have allowed genome-level data to be accessed from archived larval schistosomes and allowed retrospective analysis of samples collected decades ago. SCAN has been of use in exploring schistosome diversity, particularly with reference to hybridisation and drug resistance. Multiple author nationalities demonstrate the collaborative nature of research using the Collection, although more may need to be done in future, both to promote work led by developing countries and to ensure effective collaboration and sample sharing.
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Affiliation(s)
- Aidan M Emery
- Natural History Museum, Cromwell Rd, London, SW7 5BD, UK.
| | - Muriel Rabone
- Natural History Museum, Cromwell Rd, London, SW7 5BD, UK
| | - Toby Landeryou
- Centre for Epidemiology and Planetary Health, School of Veterinary Medicine, Scotland's Rural College, Inverness, IV2 5NA, UK
| | - Fiona Allan
- Natural History Museum, Cromwell Rd, London, SW7 5BD, UK
| | - David Rollinson
- Natural History Museum, Cromwell Rd, London, SW7 5BD, UK
- Global Schistosomiasis Alliance, Ealing Cross, 85 Uxbridge Road, Ealing, London, W5 5BW, UK
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3
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MacDonald H. Conceptual Uncertainties and Practical Challenges in Voluntary Nagoya Protocol Compliance: The Australian Situation. Biopreserv Biobank 2025; 23:23-30. [PMID: 39761123 DOI: 10.1089/bio.2024.0090] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/26/2025] Open
Abstract
Amidst growing international pressure for institutions that collect biological material to comply with the Nagoya Protocol, scientific gatekeepers such as herbaria, funding bodies, and academic journals increasingly request proof of Nagoya Protocol compliance. What happens when research is conducted in a country which does not have a comprehensive regulatory framework implementing the Nagoya Protocol? This article addresses this question through an examination of the difficulties that genetic resource collectors and biobankers may encounter in attempting to voluntarily comply with the Nagoya Protocol in Australia, a country that has not ratified the Nagoya Protocol at a federal level. It summarizes the requirements of the Nagoya Protocol, surveys the legal and regulatory situation that currently exists in Australia, and outlines the difficulties and ambiguities encountered by scientists and biobankers in attempting to navigate this system. In the process, it provides an overview of the conceptual and linguistic ambiguities which exist within the framework of the Nagoya Protocol. It argues that consensus models such as voluntary guidelines may be useful for addressing some of these ambiguities and practical challenges, but more fundamental issues will likely require legislative intervention.
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Affiliation(s)
- Hamish MacDonald
- School of Law, University of Queensland, Brisbane, Queensland, Australia
- ARC Centre of Excellence for Plant Success in Nature and Agriculture, University of Queensland, Brisbane, Queensland, Australia
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4
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de Souza de Lima A, Julião CG, da Silva EM, Dias AF, de Jesus JM, da Silva MT, Almada ED, de Andrade JP, Bensusan N, Zank S, Soldati GT. Proposals of indigenous peoples and local communities from Brazil for multilateral benefit-sharing from digital sequence information. Nat Commun 2024; 15:8933. [PMID: 39414837 PMCID: PMC11484924 DOI: 10.1038/s41467-024-53421-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/01/2024] [Accepted: 10/11/2024] [Indexed: 10/18/2024] Open
Affiliation(s)
- Adriana de Souza de Lima
- Genetic Heritage Management Council (Brazil) (Conselho de Gestão do Patrimônio Genético), Brasília, Brazil
- Network of Traditional Peoples and Communities of Brazil (Rede dos Povos Comunidades Tradicionais do Brasil), Brasília, Brazil
| | - Cristiane Gomes Julião
- Genetic Heritage Management Council (Brazil) (Conselho de Gestão do Patrimônio Genético), Brasília, Brazil
- Articulation of Indigenous Peoples of Brazil (Articulação dos Povos Indígenas do Brasil), Brasília, Brazil
| | - Elizete Maria da Silva
- Genetic Heritage Management Council (Brazil) (Conselho de Gestão do Patrimônio Genético), Brasília, Brazil
- Peasant Women's Movement (Movimento das Mulheres Camponesas), Brasília, Brazil
| | - Alberto Franca Dias
- Genetic Heritage Management Council (Brazil) (Conselho de Gestão do Patrimônio Genético), Brasília, Brazil
- Articulation of Indigenous Peoples of Brazil (Articulação dos Povos Indígenas do Brasil), Brasília, Brazil
| | - Jhonny Martins de Jesus
- Genetic Heritage Management Council (Brazil) (Conselho de Gestão do Patrimônio Genético), Brasília, Brazil
- National Coordination for the Articulation of Rural Quilombola (Afrodescendants) Communities (Coordenação Nacional de Articulação das Comunidades Negras Rurais Quilombolas), Brasília, Brazil
| | | | | | | | - Nurit Bensusan
- Observatory of Sociobiodiversity Economies (Observatório das Economias da Sociobiodiversidade), Brasília, Brazil
| | - Sofia Zank
- Universidade Federal de Santa Catarina, Florianópolis, Brazil
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Walckiers P, Frison C, Aubry S. A roadmap to equity in pandemic preparedness, prevention and response. J Glob Health 2024; 14:03031. [PMID: 39173145 PMCID: PMC11341110 DOI: 10.7189/jogh.14.03031] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 08/24/2024] Open
Affiliation(s)
| | - Christine Frison
- Law Faculty, University of Louvain, Louvain-la-Neuve, Belgium
- Law Faculty, University of Liège, Liège, Belgium
- Government and Law Research Group, University of Antwerp, Antwerp, Belgium
- European Research Council – Starting Grant DecoLawBiodiv project
| | - Sylvain Aubry
- Federal Office for Agriculture, Bern, Switzerland
- Department of Plant and Microbial Biology, University of Zürich, Zürich, Switzerland
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6
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Cheng S, Feng C, Wingen LU, Cheng H, Riche AB, Jiang M, Leverington-Waite M, Huang Z, Collier S, Orford S, Wang X, Awal R, Barker G, O'Hara T, Lister C, Siluveru A, Quiroz-Chávez J, Ramírez-González RH, Bryant R, Berry S, Bansal U, Bariana HS, Bennett MJ, Bicego B, Bilham L, Brown JKM, Burridge A, Burt C, Buurman M, Castle M, Chartrain L, Chen B, Denbel W, Elkot AF, Fenwick P, Feuerhelm D, Foulkes J, Gaju O, Gauley A, Gaurav K, Hafeez AN, Han R, Horler R, Hou J, Iqbal MS, Kerton M, Kondic-Spica A, Kowalski A, Lage J, Li X, Liu H, Liu S, Lovegrove A, Ma L, Mumford C, Parmar S, Philp C, Playford D, Przewieslik-Allen AM, Sarfraz Z, Schafer D, Shewry PR, Shi Y, Slafer GA, Song B, Song B, Steele D, Steuernagel B, Tailby P, Tyrrell S, Waheed A, Wamalwa MN, Wang X, Wei Y, Winfield M, Wu S, Wu Y, Wulff BBH, Xian W, Xu Y, Xu Y, Yuan Q, Zhang X, Edwards KJ, Dixon L, Nicholson P, Chayut N, Hawkesford MJ, Uauy C, Sanders D, Huang S, Griffiths S. Harnessing landrace diversity empowers wheat breeding. Nature 2024; 632:823-831. [PMID: 38885696 PMCID: PMC11338829 DOI: 10.1038/s41586-024-07682-9] [Citation(s) in RCA: 28] [Impact Index Per Article: 28.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/18/2023] [Accepted: 06/06/2024] [Indexed: 06/20/2024]
Abstract
Harnessing genetic diversity in major staple crops through the development of new breeding capabilities is essential to ensure food security1. Here we examined the genetic and phenotypic diversity of the A. E. Watkins landrace collection2 of bread wheat (Triticum aestivum), a major global cereal, by whole-genome re-sequencing of 827 Watkins landraces and 208 modern cultivars and in-depth field evaluation spanning a decade. We found that modern cultivars are derived from two of the seven ancestral groups of wheat and maintain very long-range haplotype integrity. The remaining five groups represent untapped genetic sources, providing access to landrace-specific alleles and haplotypes for breeding. Linkage disequilibrium-based haplotypes and association genetics analyses link Watkins genomes to the thousands of identified high-resolution quantitative trait loci and significant marker-trait associations. Using these structured germplasm, genotyping and informatics resources, we revealed many Watkins-unique beneficial haplotypes that can confer superior traits in modern wheat. Furthermore, we assessed the phenotypic effects of 44,338 Watkins-unique haplotypes, introgressed from 143 prioritized quantitative trait loci in the context of modern cultivars, bridging the gap between landrace diversity and current breeding. This study establishes a framework for systematically utilizing genetic diversity in crop improvement to achieve sustainable food security.
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Affiliation(s)
- Shifeng Cheng
- Shenzhen Branch, Guangdong Laboratory for Lingnan Modern Agriculture, Genome Analysis Laboratory of the Ministry of Agriculture, Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences, Shenzhen, China.
| | - Cong Feng
- Shenzhen Branch, Guangdong Laboratory for Lingnan Modern Agriculture, Genome Analysis Laboratory of the Ministry of Agriculture, Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences, Shenzhen, China
| | | | - Hong Cheng
- Shenzhen Branch, Guangdong Laboratory for Lingnan Modern Agriculture, Genome Analysis Laboratory of the Ministry of Agriculture, Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences, Shenzhen, China
| | | | - Mei Jiang
- Shenzhen Branch, Guangdong Laboratory for Lingnan Modern Agriculture, Genome Analysis Laboratory of the Ministry of Agriculture, Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences, Shenzhen, China
| | | | - Zejian Huang
- Shenzhen Branch, Guangdong Laboratory for Lingnan Modern Agriculture, Genome Analysis Laboratory of the Ministry of Agriculture, Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences, Shenzhen, China
| | | | | | - Xiaoming Wang
- John Innes Centre, Norwich, UK
- State Key Laboratory of Crop Stress Biology for Arid Areas, College of Agronomy, Northwest A&F University, Yangling, China
| | | | - Gary Barker
- Functional Genomics, School of Biological Sciences, University of Bristol, Bristol, UK
| | | | | | | | | | | | | | | | - Urmil Bansal
- School of Life and Environmental Sciences, Faculty of Science, The University of Sydney Plant Breeding Institute, Cobbitty, New South Wales, Australia
| | - Harbans S Bariana
- School of Life and Environmental Sciences, Faculty of Science, The University of Sydney Plant Breeding Institute, Cobbitty, New South Wales, Australia
- Western Sydney University, Richmond, New South Wales, Australia
| | - Malcolm J Bennett
- School of Biosciences, University of Nottingham, Sutton Bonington, UK
| | - Breno Bicego
- Department of Agricultural and Forest Sciences and Engineering, University of Lleida-AGROTECNIO-CERCA Center, Lleida, Spain
| | | | | | - Amanda Burridge
- Functional Genomics, School of Biological Sciences, University of Bristol, Bristol, UK
| | | | | | | | | | - Baizhi Chen
- Shenzhen Branch, Guangdong Laboratory for Lingnan Modern Agriculture, Genome Analysis Laboratory of the Ministry of Agriculture, Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences, Shenzhen, China
| | - Worku Denbel
- Debre Zeit Agricultural Research Center, Ethiopian Institute of Agricultural Research, Debre Zeit, Ethiopia
| | - Ahmed F Elkot
- Wheat Research Department, Field Crops Research Institute, Agricultural Research Center, Giza, Egypt
| | | | | | - John Foulkes
- School of Biosciences, University of Nottingham, Sutton Bonington, UK
| | - Oorbessy Gaju
- School of Biosciences, University of Nottingham, Sutton Bonington, UK
| | - Adam Gauley
- School of Biology, University of Leeds, Leeds, UK
- Agri-Food and Biosciences Institute, Belfast, UK
| | | | | | - Ruirui Han
- Shenzhen Branch, Guangdong Laboratory for Lingnan Modern Agriculture, Genome Analysis Laboratory of the Ministry of Agriculture, Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences, Shenzhen, China
- Qingdao Agricultural University, Qingdao, China
| | | | - Junliang Hou
- Shenzhen Branch, Guangdong Laboratory for Lingnan Modern Agriculture, Genome Analysis Laboratory of the Ministry of Agriculture, Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences, Shenzhen, China
| | - Muhammad S Iqbal
- Shenzhen Branch, Guangdong Laboratory for Lingnan Modern Agriculture, Genome Analysis Laboratory of the Ministry of Agriculture, Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences, Shenzhen, China
| | | | - Ankica Kondic-Spica
- Institute of Field and Vegetable Crops, National Institute of the Republic of Serbia, Novi Sad, Republic of Serbia
| | | | | | - Xiaolong Li
- Key Laboratory of Quality and Safety Control for Subtropical Fruit and Vegetable, Ministry of Agriculture and Rural Affairs, College of Horticulture Science, Zhejiang A&F University, Hangzhou, China
| | - Hongbing Liu
- Shenzhen Branch, Guangdong Laboratory for Lingnan Modern Agriculture, Genome Analysis Laboratory of the Ministry of Agriculture, Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences, Shenzhen, China
| | - Shiyan Liu
- Shenzhen Branch, Guangdong Laboratory for Lingnan Modern Agriculture, Genome Analysis Laboratory of the Ministry of Agriculture, Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences, Shenzhen, China
| | | | - Lingling Ma
- Shenzhen Branch, Guangdong Laboratory for Lingnan Modern Agriculture, Genome Analysis Laboratory of the Ministry of Agriculture, Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences, Shenzhen, China
| | | | | | | | | | | | - Zareen Sarfraz
- Shenzhen Branch, Guangdong Laboratory for Lingnan Modern Agriculture, Genome Analysis Laboratory of the Ministry of Agriculture, Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences, Shenzhen, China
| | | | | | - Yan Shi
- Shenzhen Branch, Guangdong Laboratory for Lingnan Modern Agriculture, Genome Analysis Laboratory of the Ministry of Agriculture, Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences, Shenzhen, China
| | - Gustavo A Slafer
- Department of Agricultural and Forest Sciences and Engineering, University of Lleida-AGROTECNIO-CERCA Center, Lleida, Spain
- ICREA, Catalonian Institution for Research and Advanced Studies, Barcelona, Spain
| | - Baoxing Song
- National Key Laboratory of Wheat Improvement, Peking University Institute of Advanced Agricultural Sciences, Shandong Laboratory of Advanced Agriculture Sciences in Weifang, Weifang, China
| | - Bo Song
- Shenzhen Branch, Guangdong Laboratory for Lingnan Modern Agriculture, Genome Analysis Laboratory of the Ministry of Agriculture, Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences, Shenzhen, China
| | | | | | | | | | - Abdul Waheed
- Shenzhen Branch, Guangdong Laboratory for Lingnan Modern Agriculture, Genome Analysis Laboratory of the Ministry of Agriculture, Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences, Shenzhen, China
| | | | - Xingwei Wang
- Shenzhen Branch, Guangdong Laboratory for Lingnan Modern Agriculture, Genome Analysis Laboratory of the Ministry of Agriculture, Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences, Shenzhen, China
| | - Yanping Wei
- Shenzhen Branch, Guangdong Laboratory for Lingnan Modern Agriculture, Genome Analysis Laboratory of the Ministry of Agriculture, Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences, Shenzhen, China
| | - Mark Winfield
- Functional Genomics, School of Biological Sciences, University of Bristol, Bristol, UK
| | - Shishi Wu
- Shenzhen Branch, Guangdong Laboratory for Lingnan Modern Agriculture, Genome Analysis Laboratory of the Ministry of Agriculture, Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences, Shenzhen, China
| | - Yubing Wu
- Shenzhen Branch, Guangdong Laboratory for Lingnan Modern Agriculture, Genome Analysis Laboratory of the Ministry of Agriculture, Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences, Shenzhen, China
- Huazhong Agricultural University, Wuhan, China
| | - Brande B H Wulff
- John Innes Centre, Norwich, UK
- Center for Desert Agriculture, Plant Science Program, Biological and Environmental Science and Engineering Division (BESE), King Abdullah University of Science and Technology (KAUST), Thuwal, Saudi Arabia
| | - Wenfei Xian
- Shenzhen Branch, Guangdong Laboratory for Lingnan Modern Agriculture, Genome Analysis Laboratory of the Ministry of Agriculture, Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences, Shenzhen, China
- Department of Molecular Biology, Max Planck Institute for Biology Tübingen, Tübingen, Germany
| | - Yawen Xu
- Shenzhen Branch, Guangdong Laboratory for Lingnan Modern Agriculture, Genome Analysis Laboratory of the Ministry of Agriculture, Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences, Shenzhen, China
- Huazhong Agricultural University, Wuhan, China
| | - Yunfeng Xu
- Shenzhen Branch, Guangdong Laboratory for Lingnan Modern Agriculture, Genome Analysis Laboratory of the Ministry of Agriculture, Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences, Shenzhen, China
| | - Quan Yuan
- Shenzhen Branch, Guangdong Laboratory for Lingnan Modern Agriculture, Genome Analysis Laboratory of the Ministry of Agriculture, Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences, Shenzhen, China
| | - Xin Zhang
- Shenzhen Branch, Guangdong Laboratory for Lingnan Modern Agriculture, Genome Analysis Laboratory of the Ministry of Agriculture, Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences, Shenzhen, China
- Huazhong Agricultural University, Wuhan, China
| | - Keith J Edwards
- Functional Genomics, School of Biological Sciences, University of Bristol, Bristol, UK
| | - Laura Dixon
- School of Biology, University of Leeds, Leeds, UK
| | | | | | | | | | | | - Sanwen Huang
- Shenzhen Branch, Guangdong Laboratory for Lingnan Modern Agriculture, Genome Analysis Laboratory of the Ministry of Agriculture, Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences, Shenzhen, China
- State Key Laboratory of Tropical Crop Breeding, Chinese Academy of Tropical Agricultural Sciences, Haikou, China
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Halewood M, Bagley MA, Wyss M, Scholz AH. New benefit-sharing principles for digital sequence information. Science 2023; 382:520-522. [PMID: 37917709 DOI: 10.1126/science.adj1331] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/04/2023]
Abstract
Benefit sharing should be decoupled from access.
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Affiliation(s)
- Michael Halewood
- Alliance of Bioversity International and the International Center for Tropical Agriculture, Rome, Italy
| | | | - Markus Wyss
- DSM Nutritional Products Ltd, Kaiseraugst, Switzerland
| | - Amber Hartman Scholz
- Leibniz Institute DSMZ, German Collection of Microorganisms and Cell Cultures, Braunschweig, Germany
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Ebert AW, Engels JMM, Schafleitner R, van Hintum T, Mwila G. Critical Review of the Increasing Complexity of Access and Benefit-Sharing Policies of Genetic Resources for Genebank Curators and Plant Breeders-A Public and Private Sector Perspective. PLANTS (BASEL, SWITZERLAND) 2023; 12:2992. [PMID: 37631201 PMCID: PMC10459714 DOI: 10.3390/plants12162992] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/16/2023] [Revised: 08/09/2023] [Accepted: 08/17/2023] [Indexed: 08/27/2023]
Abstract
Plant breeders develop competitive, high-yielding, resistant crop varieties that can cope with the challenges of biotic stresses and tolerate abiotic stresses, resulting in nutritious food for consumers worldwide. To achieve this, plant breeders need continuous and easy access to plant genetic resources (PGR) for trait screening, to generate new diversity that can be built into newly improved varieties. International agreements such as the Convention on Biological Diversity (CBD), the International Treaty on Plant Genetic Resources for Food and Agriculture (ITPGRFA) and the Nagoya Protocol recognised the sovereign rights of countries over their genetic resources. Under the CBD/Nagoya Protocol, countries are free to establish specific national legislations regulating germplasm access and benefit-sharing to be negotiated bilaterally. Consequently, access to PGR became increasingly restricted and cumbersome, resulting in a decrease in germplasm exchange. The ITPGRFA attempted to ease this situation by establishing a globally harmonised multilateral system (MLS). Unfortunately, the MLS is (still) restricted to a limited number of food and forage crops, with very few vegetable crops. Easy and continuous access to genetic diversity combined with equitable and fair sharing of derived benefits is a prerequisite to breeding new varieties. Facilitated access contributes to sustainable crop production and food and nutrition security; therefore, access to and, consequently, use of PGRFA needs to be improved. Thus, the authors recommend, among others, expanding the scope of the ITPGRFA to include all PGRFA and making them and all related information accessible under a Standard Material Transfer Agreement (SMTA) combined, if necessary, with a subscription system or a seed sales tax. Such a transparent, functional and efficient system would erase legal uncertainties and minimise transaction costs for conservers, curators and users of genetic resources, thus aiding plant breeders to fulfil their mission.
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Affiliation(s)
| | - Johannes M. M. Engels
- Independent Researcher, Voc. Podere Sansano 5, 06062 Citta’ della Pieve (PG), Italy;
| | | | - Theo van Hintum
- Centre for Genetic Resources, the Netherlands (CGN), Wageningen University & Research, 6700 AA Wageningen, The Netherlands;
| | - Godfrey Mwila
- Executive Secretary of the Zambia Seed Trade Association (ZASTA), Sulmach Buldings, Tiyende Pamodzi, Off Nangweya, Lusaka, Zambia;
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Abstract
Food systems face new climatic and socioecological challenges and farmers need a diversity of new plant varieties to respond to these. While plant breeding is important, institutional innovations in seed systems are critical to ensure that new traits and varieties make their way into farmers' fields. This Perspective reviews the state of knowledge on seed system development, outlining insights emerging from the literature that can help navigate the way forward. We synthesize evidence on the contributions and limitations of the different actors, activities, and institutions pertaining to all seed systems smallholder farmers use, formal and informal. To do so, we structure our analysis on three functions-variety development and management, seed production, and seed dissemination-and two contextual factors-seed governance and food system drivers-that can be used to describe any seed system. Our review reveals the strengths and weaknesses of the activities of different actors along the entire chain of functions and demonstrates the multifaceted efforts to strengthen seed systems. We document that a new agenda for seed system development is taking root, based on the view that formal and farmers' seed systems are complementary. Because needs differ from crop to crop, farmer to farmer, and between agroecological and food system contexts, a variety of pathways are needed to ensure farmers' seed security. While the complexity of seed systems eludes a simple roadmap, we conclude by planting a "signpost" with principles to guide efforts to develop resilient and inclusive seed systems.
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Affiliation(s)
- Ola T. Westengen
- Department of International Environment and Development Studies, Faculty of Landscape and Society, Norwegian University of Life Sciences, 1430Ås, Norway
| | - Sarah Paule Dalle
- Department of International Environment and Development Studies, Faculty of Landscape and Society, Norwegian University of Life Sciences, 1430Ås, Norway
| | - Teshome Hunduma Mulesa
- Department of International Environment and Development Studies, Faculty of Landscape and Society, Norwegian University of Life Sciences, 1430Ås, Norway
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10
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Biopiracy: Crying wolf or a lever for equity and conservation? RESEARCH POLICY 2023. [DOI: 10.1016/j.respol.2022.104674] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
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Jalil B, Schultz F, Heinrich M. Where to begin? The best publications for newcomers to ethnopharmacology. Front Pharmacol 2023; 14:1141502. [PMID: 36843950 PMCID: PMC9950406 DOI: 10.3389/fphar.2023.1141502] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/10/2023] [Accepted: 01/30/2023] [Indexed: 02/12/2023] Open
Abstract
Have you ever tried to enter a new field of research or to get a basic overview? Of course, we all have. However, where does one begin when entering a new field of research? This mini-review offers a concise (and certainly not comprehensive) overview on the fast-evolving field of ethnopharmacology. Based on a survey in which researchers provided feedback on the publications they find most relevant in the field and an assessment of what publications have been particularly relevant in the field, this paper offers a review of the 30 best papers and books for newcomers in the field. They cover the relevant areas within ethnopharmacology and give examples from all the core regions where ethnopharmacological research is being conducted. Different and sometimes contrasting approaches and theoretical frameworks are included, as well as publications reviewing important methods. With this, basic knowledge on related fields such as ethnobotany, anthropology, fieldwork methods and pharmacognosy is also incorporated. This paper is an invitation to explore fundamental aspects of the field and to understand the particular challenges faced by researchers newly entering this multi- and transdisciplinary field, and to provide them with examples of particularly stimulating research.
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Affiliation(s)
- Banaz Jalil
- Pharmacognosy and Phytotherapy, UCL School of Pharmacy, London, United Kingdom,*Correspondence: Banaz Jalil, ; Michael Heinrich,
| | - Fabien Schultz
- Pharmacognosy and Phytotherapy, UCL School of Pharmacy, London, United Kingdom,Department of Agriculture and Food Sciences, Neubrandenburg University of Applied Sciences, Neubrandenburg, Germany
| | - Michael Heinrich
- Pharmacognosy and Phytotherapy, UCL School of Pharmacy, London, United Kingdom,Department of Pharmaceutical Sciences and Chinese Medicine Resources, Chinese Medicine Research Center, College of Chinese Medicine, China Medical University, Taichung, Taiwan,*Correspondence: Banaz Jalil, ; Michael Heinrich,
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12
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Batley J, Hufton AL, Oliveira G, Varshney RK. Global Action on Biodiversity May Hinge on Genetic Data Sharing Agreement. ADVANCED GENETICS (HOBOKEN, N.J.) 2022; 3:2200031. [PMID: 36911288 PMCID: PMC9993466 DOI: 10.1002/ggn2.202200031] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/24/2022]
Affiliation(s)
- Jacqueline Batley
- School of Biological Sciences The University of Western Australia Crawley WA 6009 Australia
| | | | | | - Rajeev K Varshney
- Centre for Crop & Food Innovation State Agricultural Biotechnology Centre Food Futures Institute Murdoch University Murdoch WA 6150 Australia
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13
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Lemke AA, Esplin ED, Goldenberg AJ, Gonzaga-Jauregui C, Hanchard NA, Harris-Wai J, Ideozu JE, Isasi R, Landstrom AP, Prince AER, Turbitt E, Sabatello M, Schrier Vergano SA, Taylor MRG, Yu JH, Brothers KB, Garrison NA. Addressing underrepresentation in genomics research through community engagement. Am J Hum Genet 2022; 109:1563-1571. [PMID: 36055208 PMCID: PMC9502069 DOI: 10.1016/j.ajhg.2022.08.005] [Citation(s) in RCA: 55] [Impact Index Per Article: 18.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022] Open
Abstract
The vision of the American Society of Human Genetics (ASHG) is that people everywhere will realize the benefits of human genetics and genomics. Implicit in that vision is the importance of ensuring that the benefits of human genetics and genomics research are realized in ways that minimize harms and maximize benefits, a goal that can only be achieved through focused efforts to address health inequities and increase the representation of underrepresented communities in genetics and genomics research. This guidance is intended to advance community engagement as an approach that can be used across the research lifecycle. Community engagement uniquely offers researchers in human genetics and genomics an opportunity to pursue that vision successfully, including by addressing underrepresentation in genomics research.
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Affiliation(s)
- Amy A Lemke
- Professional Practice and Social Implications Committee, American Society of Human Genetics, Rockville MD, USA; Professional Practice and Social Implications Community Engagement Guidance Writing Group, American Society of Human Genetics, Rockville, MD, USA; Norton Children's Research Institute, affiliated with the University of Louisville School of Medicine, Louisville, KY, USA.
| | - Edward D Esplin
- Professional Practice and Social Implications Committee, American Society of Human Genetics, Rockville MD, USA; Professional Practice and Social Implications Community Engagement Guidance Writing Group, American Society of Human Genetics, Rockville, MD, USA; Invitae, San Francisco, CA, USA
| | - Aaron J Goldenberg
- Professional Practice and Social Implications Community Engagement Guidance Writing Group, American Society of Human Genetics, Rockville, MD, USA; Department of Bioethics, Case Western Reserve University School of Medicine, Cleveland OH, USA
| | - Claudia Gonzaga-Jauregui
- Professional Practice and Social Implications Community Engagement Guidance Writing Group, American Society of Human Genetics, Rockville, MD, USA; International Laboratory for Human Genome Research, Laboratorio Internacional de Investigación sobre el Genoma Humano, Universidad Nacional Autónoma de México, Querétaro, México
| | - Neil A Hanchard
- Professional Practice and Social Implications Community Engagement Guidance Writing Group, American Society of Human Genetics, Rockville, MD, USA; Childhood Complex Disease Genomics Section, Center for Precision Health Research, National Human Genomics Research Institute, National Institutes of Health, Bethesda, MD, USA
| | - Julie Harris-Wai
- Professional Practice and Social Implications Community Engagement Guidance Writing Group, American Society of Human Genetics, Rockville, MD, USA; University of California at San Francisco, Department of Social and Behavioral Sciences, Program on Bioethics, Institute for Health and Aging, San Francisco CA, USA
| | - Justin E Ideozu
- Professional Practice and Social Implications Committee, American Society of Human Genetics, Rockville MD, USA; Professional Practice and Social Implications Community Engagement Guidance Writing Group, American Society of Human Genetics, Rockville, MD, USA; Genomic Medicine, Genetic Research Center, AbbVie, Chicago, IL, USA
| | - Rosario Isasi
- Professional Practice and Social Implications Community Engagement Guidance Writing Group, American Society of Human Genetics, Rockville, MD, USA; Dr. J. T. Macdonald Foundation Department of Human Genetics, University of Miami Leonard M. Miller School of Medicine, Miami FL, USA; John P. Hussman Institute for Human Genomics, University of Miami Leonard M. Miller School of Medicine, Miami FL, USA
| | - Andrew P Landstrom
- Professional Practice and Social Implications Committee, American Society of Human Genetics, Rockville MD, USA; Professional Practice and Social Implications Community Engagement Guidance Writing Group, American Society of Human Genetics, Rockville, MD, USA; Department of Pediatrics, Division of Pediatric Cardiology, Duke University School of Medicine, Durham, NC, USA
| | - Anya E R Prince
- Professional Practice and Social Implications Community Engagement Guidance Writing Group, American Society of Human Genetics, Rockville, MD, USA; University of Iowa College of Law, Iowa City IA, USA
| | - Erin Turbitt
- Professional Practice and Social Implications Committee, American Society of Human Genetics, Rockville MD, USA; Professional Practice and Social Implications Community Engagement Guidance Writing Group, American Society of Human Genetics, Rockville, MD, USA; Discipline of Genetic Counselling, University of Technology Sydney, Ultimo NSW 2007, Australia
| | - Maya Sabatello
- Professional Practice and Social Implications Community Engagement Guidance Writing Group, American Society of Human Genetics, Rockville, MD, USA; Center for Precision Medicine and Genomics, Department of Medicine, Columbia University, New York, NY, USA; Division of Ethics, Department of Medical Humanities and Ethics, Columbia University, New York, NY, USA
| | - Samantha A Schrier Vergano
- Professional Practice and Social Implications Committee, American Society of Human Genetics, Rockville MD, USA; Professional Practice and Social Implications Community Engagement Guidance Writing Group, American Society of Human Genetics, Rockville, MD, USA; Division of Medical Genetics and Metabolism, Children's Hospital of The King's Daughters, Norfolk, VA, USA
| | - Matthew R G Taylor
- Professional Practice and Social Implications Committee, American Society of Human Genetics, Rockville MD, USA; Professional Practice and Social Implications Community Engagement Guidance Writing Group, American Society of Human Genetics, Rockville, MD, USA; Adult Medical Genetics Program, Department of Medicine, University of Colorado Anschutz Medical Campus, Aurora, CO, USA
| | - Joon-Ho Yu
- Professional Practice and Social Implications Community Engagement Guidance Writing Group, American Society of Human Genetics, Rockville, MD, USA; Division of Genetic Medicine, Department of Pediatrics , University of Washington School of Medicine, Seattle, WA, USA; Division of Bioethics and Palliative Care, Department of Pediatrics , University of Washington School of Medicine, Seattle, WA, USA; Institute for Public Health Genetics, School of Public Health, University of Washington, Seattle, WA, USA; Treuman Katz Center for Pediatric Bioethics, Seattle Children's Hospital and Research Institute, Seattle, WA, USA
| | - Kyle B Brothers
- Professional Practice and Social Implications Committee, American Society of Human Genetics, Rockville MD, USA; Professional Practice and Social Implications Community Engagement Guidance Writing Group, American Society of Human Genetics, Rockville, MD, USA; Norton Children's Research Institute, affiliated with the University of Louisville School of Medicine, Louisville, KY, USA
| | - Nanibaa' A Garrison
- Professional Practice and Social Implications Committee, American Society of Human Genetics, Rockville MD, USA; Professional Practice and Social Implications Community Engagement Guidance Writing Group, American Society of Human Genetics, Rockville, MD, USA; Institute for Society and Genetics, University of California, Los Angeles, Los Angeles, CA, USA; Institute for Precision Health, David Geffen School of Medicine, University of California, Los Angeles, Los Angeles, CA, USA; Division of General Internal Medicine and Health Services Research, David Geffen School of Medicine, University of California, Los Angeles, Los Angeles, CA, USA
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14
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Nehring R. Digitising biopiracy? The global governance of plant genetic resources in the age of digital sequencing information. THIRD WORLD QUARTERLY 2022; 43:1970-1987. [PMID: 35935539 PMCID: PMC9344932 DOI: 10.1080/01436597.2022.2079489] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/08/2021] [Revised: 05/12/2022] [Accepted: 05/16/2022] [Indexed: 06/15/2023]
Abstract
Historical concerns over the exploitation of the Global South's genetic biodiversity framed the importance of creating global governance mechanisms to ensure fair access to and benefit-sharing of genetic resources worldwide. The Convention on Biological Diversity (CBD) and International Treaty on Plant Genetic Resources for Food and Agriculture (Plant Treaty) came into existence over the past three decades to redress the centuries of genetic exploitation of the Global South. Both of the treaties explicitly regulate and facilitate the exchange of physical genetic material. The recent emergence of relevant digital technologies, such as digital sequencing information (DSI), could make both treaties irrelevant. This article analyses the current state of the CBD and Plant Treaty as it relates to global agricultural research in light of DSI. I argue that DSI presents less of a threat to exacerbating historical gene flows than it does to the further displacement of public sector research by the private sector. The article then suggests looking at the lessons from open-source approaches to counter the privatisation of DSI and related gene flows. I draw on 11 key informant interviews with country negotiators involved with the CBD and Plant Treaty as well as a review of official reports from both frameworks.
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Affiliation(s)
- Ryan Nehring
- Department of History and Philosophy of Science, University of Cambridge, Cambridge, UK
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15
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Kharb D. Sharing genetic resources fairly between nations. Med Leg J 2022; 90:104-105. [PMID: 34610773 DOI: 10.1177/00258172211031697] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/13/2023]
Abstract
The global governance of natural resources was established initially by Convention on Biodiversity(CBD) in 1992 followed by Nagoya Protocol(NP) in 2010 with an objective of ensuring fairness and equitable benefit sharing arising from the exploitation of genetic resources creating incentive at the same time for the conservation and sustainable use of such resources. The framework has been criticized for its inefficiency in achieving its objectives. Recently it has been the subject of debate on whether digital sequence information is covered by the term 'genetic resources'. There are divergent views in different countries on how digital sequencing information (DSI) should be defined and whether the information derived or non-tangible aspect of genetic resources should also fall under the ABS regime. The present paper analyses the Indian position on these points.
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16
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Bian X, Garner BH, Liu H, Vogler AP. The SITE-100 Project: Site-Based Biodiversity Genomics for Species Discovery, Community Ecology, and a Global Tree-of-Life. Front Ecol Evol 2022. [DOI: 10.3389/fevo.2022.787560] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open
Abstract
Most insect communities are composed of evolutionarily diverse lineages, but detailed phylogenetic analyses of whole communities are lacking, in particular in species-rich tropical faunas. Likewise, our knowledge of the Tree-of-Life to document evolutionary diversity of organisms remains highly incomplete and especially requires the inclusion of unstudied lineages from species-rich ecosystems. Here we present the SITE-100 program, which is an attempt at building the Tree-of-Life from whole-community sampling of high-biodiversity sites around the globe. Combining the local site-based sets into a global tree produces an increasingly comprehensive estimate of organismal phylogeny, while also re-tracing evolutionary history of lineages constituting the local community. Local sets are collected in bulk in standardized passive traps and imaged with large-scale high-resolution cameras, which is followed by a parataxonomy step for the preliminary separation of morphospecies and selection of specimens for phylogenetic analysis. Selected specimens are used for individual DNA extraction and sequencing, usually to sequence mitochondrial genomes. All remaining specimens are bulk extracted and subjected to metabarcoding. Phylogenetic analysis on the mitogenomes produces a reference tree to which short barcode sequences are added in a secondary analysis using phylogenetic placement methods or backbone constrained tree searches. However, the approach may be hampered because (1) mitogenomes are limited in phylogenetic informativeness, and (2) site-based sampling may produce poor taxon coverage which causes challenges for phylogenetic inference. To mitigate these problems, we first assemble nuclear shotgun data from taxonomically chosen lineages to resolve the base of the tree, and add site-based mitogenome and DNA barcode data in three hierarchical steps. We posit that site-based sampling, though not meeting the criterion of “taxon-completeness,” has great merits given preliminary studies showing representativeness and evenness of taxa sampled. We therefore argue in favor of site-based sampling as an unorthodox but logistically efficient way to construct large phylogenetic trees.
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17
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Multilateral benefit-sharing from digital sequence information will support both science and biodiversity conservation. Nat Commun 2022; 13:1086. [PMID: 35197464 PMCID: PMC8866420 DOI: 10.1038/s41467-022-28594-0] [Citation(s) in RCA: 18] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/15/2021] [Accepted: 01/28/2022] [Indexed: 11/30/2022] Open
Abstract
Open access to sequence data is a cornerstone of biology and biodiversity research, but has created tension under the United Nations Convention on Biological Diversity (CBD). Policy decisions could compromise research and development, unless a practical multilateral solution is implemented. Ensuring international benefit-sharing from sequence data without jeopardising open sharing is a major obstacle for the Convention on Biological Diversity and other UN negotiations. Here, the authors propose a solution to address the concerns of both developing countries and life scientists.
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18
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Sara R, Wyss M, Custers R, in 't Veld A, Muyldermans D. A need for recalibrating access and benefit sharing: How best to improve conservation, sustainable use of biodiversity, and equitable benefit sharing in a mutually reinforcing manner?: How best to improve conservation, sustainable use of biodiversity, and equitable benefit sharing in a mutually reinforcing manner? EMBO Rep 2022; 23:e53973. [PMID: 34927336 PMCID: PMC8811654 DOI: 10.15252/embr.202153973] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/09/2021] [Revised: 11/03/2021] [Accepted: 12/07/2021] [Indexed: 11/09/2022] Open
Abstract
The upcoming UN Biodiversity Conference should address shortfalls of Access and Benefit Sharing systems inspired by the Nagoya Protocol to help improve sustainable use of biodiversity and equitable benefit sharing.
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Affiliation(s)
| | - Markus Wyss
- DSM Nutritional Products Ltd.KaiseraugstSwitzerland
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19
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Wainwright CL, Teixeira MM, Adelson DL, Buenz EJ, David B, Glaser KB, Harata-Lee Y, Howes MJR, Izzo AA, Maffia P, Mayer AM, Mazars C, Newman DJ, Nic Lughadha E, Pimenta AM, Parra JA, Qu Z, Shen H, Spedding M, Wolfender JL. Future Directions for the Discovery of Natural Product-Derived Immunomodulating Drugs. Pharmacol Res 2022; 177:106076. [PMID: 35074524 DOI: 10.1016/j.phrs.2022.106076] [Citation(s) in RCA: 36] [Impact Index Per Article: 12.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 12/21/2021] [Accepted: 01/07/2022] [Indexed: 02/06/2023]
Abstract
Drug discovery from natural sources is going through a renaissance, having spent many decades in the shadow of synthetic molecule drug discovery, despite the fact that natural product-derived compounds occupy a much greater chemical space than those created through synthetic chemistry methods. With this new era comes new possibilities, not least the novel targets that have emerged in recent times and the development of state-of-the-art technologies that can be applied to drug discovery from natural sources. Although progress has been made with some immunomodulating drugs, there remains a pressing need for new agents that can be used to treat the wide variety of conditions that arise from disruption, or over-activation, of the immune system; natural products may therefore be key in filling this gap. Recognising that, at present, there is no authoritative article that details the current state-of-the-art of the immunomodulatory activity of natural products, this in-depth review has arisen from a joint effort between the International Union of Basic and Clinical Pharmacology (IUPHAR) Natural Products and Immunopharmacology, with contributions from a Powered by Editorial Manager® and ProduXion Manager® from Aries Systems Corporation number of world-leading researchers in the field of natural product drug discovery, to provide a "position statement" on what natural products has to offer in the search for new immunomodulatory argents. To this end, we provide a historical look at previous discoveries of naturally occurring immunomodulators, present a picture of the current status of the field and provide insight into the future opportunities and challenges for the discovery of new drugs to treat immune-related diseases.
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Affiliation(s)
- Cherry L Wainwright
- Centre for Natural Products in Health, Robert Gordon University, Aberdeen, UK.
| | - Mauro M Teixeira
- Department of Biochemistry and Immunology, Universidade Federal de Minas Gerais, Brazil.
| | - David L Adelson
- Molecular & Biomedical Science, University of Adelaide, Australia.
| | - Eric J Buenz
- Nelson Marlborough Institute of Technology, New Zealand.
| | - Bruno David
- Green Mission Pierre Fabre, Pierre Fabre Laboratories, Toulouse, France.
| | - Keith B Glaser
- AbbVie Inc., Integrated Discovery Operations, North Chicago, USA.
| | - Yuka Harata-Lee
- Molecular & Biomedical Science, University of Adelaide, Australia
| | - Melanie-Jayne R Howes
- Royal Botanic Gardens Kew, Richmond, Surrey, UK; Institute of Pharmaceutical Science, Faculty of Life Sciences & Medicine, King's College London, UK.
| | - Angelo A Izzo
- Department of Pharmacy, School of Medicine, University of Naples Federico II, Italy.
| | - Pasquale Maffia
- Department of Pharmacy, School of Medicine, University of Naples Federico II, Italy; Institute of Infection, Immunity and Inflammation, University of Glasgow, Glasgow, UK.
| | - Alejandro Ms Mayer
- Department of Pharmacology, College of Graduate Studies, Midwestern University, IL, USA.
| | - Claire Mazars
- Green Mission Pierre Fabre, Pierre Fabre Laboratories, Toulouse, France.
| | | | | | - Adriano Mc Pimenta
- Laboratory of Animal Venoms and Toxins, Department of Biochemistry and Immunology, Federal University of Minas Gerais, Belo Horizonte, Minas Gerais, Brazil.
| | - John Aa Parra
- Laboratory of Animal Venoms and Toxins, Department of Biochemistry and Immunology, Federal University of Minas Gerais, Belo Horizonte, Minas Gerais, Brazil
| | - Zhipeng Qu
- Molecular & Biomedical Science, University of Adelaide, Australia
| | - Hanyuan Shen
- Molecular & Biomedical Science, University of Adelaide, Australia
| | | | - Jean-Luc Wolfender
- School of Pharmaceutical Sciences, University of Geneva, Switzerland; Institute of Pharmaceutical Sciences of Western Switzerland, University of Geneva, Switzerland.
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20
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Kegamba JJ, Sangha KK, Wurm P, Garnett ST. A review of conservation-related benefit-sharing mechanisms in Tanzania. Glob Ecol Conserv 2022. [DOI: 10.1016/j.gecco.2021.e01955] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/19/2022] Open
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21
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Uehara T, Sono M, Tsuge T, Onuma A. Can prior informed consent create virtuous cycle between biodiversity conservation and genetic resources utilization? JOURNAL OF ENVIRONMENTAL MANAGEMENT 2021; 300:113767. [PMID: 34562821 DOI: 10.1016/j.jenvman.2021.113767] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/19/2021] [Revised: 07/23/2021] [Accepted: 09/15/2021] [Indexed: 06/13/2023]
Abstract
This study attempted to predict the effectiveness of prior informed consent (PIC) as a mechanism under the Nagoya Protocol (NP) through the case of Japan, a developed country with a wealth of genetic biodiversity. The NP to the Convention on Biological Diversity (CBD) aims at creating a virtuous cycle between biodiversity conservation and the utilization of genetic resources through fair and equitable benefit sharing. As PIC is a crucial component of the NP for promoting fair and equitable sharing, this study investigated whether introducing PIC creates a virtuous cycle. Considering the limitations of empirical data, this study adopted a policy Delphi comprising experts in an iterative group communication process that used consecutive questionnaires to reveal diverse issues as input for policymaking. We identified six related issues that were evaluated for the case of introduction and three for the case of no introduction of PIC. Their relative importance as a policy concern was measured through best-worst scaling to narrow down policy-relevant issues. This study revealed that contrary to the NP's intent, the overall contribution to the virtuous cycle is limited. In designing PIC mechanisms, policymakers must pay particular attention to bequest and research and development. This study identified three paths through which the negative impacts on research and development further negatively affect bequest, that is, slackening the identification of important genetic resources and ecosystems to conserve, disincentivizing biodiversity conservation for genetic resource use, and dampening ex-situ conservation efforts.
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Affiliation(s)
- Takuro Uehara
- College of Policy Science, Ritsumeikan University, 2-150 Iwakura-Cho, Ibaraki City, Osaka, 567-8570, Japan.
| | - Miharu Sono
- Mitsubishi UFJ Research and Consulting, 5-11-2 Toranomon, Minato-ku, Tokyo, 105-8501, Japan.
| | - Takahiro Tsuge
- Graduate School of Global Environmental Studies, Sophia University, 7-1 Kioi-cho, Chiyoda-ku, Tokyo, 102-8554, Japan.
| | - Ayumi Onuma
- Faculty of Economics, Keio University, 2-15-45 Mita, Minato-ku, Tokyo, 108-8345, Japan.
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22
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Kallow S, Mertens A, Janssens SB, Vandelook F, Dickie J, Swennen R, Panis B. Banana seed genetic resources for food security: Status, constraints, and future priorities. Food Energy Secur 2021; 11:e345. [PMID: 35866053 PMCID: PMC9285888 DOI: 10.1002/fes3.345] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/13/2021] [Revised: 10/14/2021] [Accepted: 10/25/2021] [Indexed: 11/21/2022] Open
Abstract
Storing seed collections of crop wild relatives, wild plant taxa genetically related to crops, is an essential component in global food security. Seed banking protects genetic resources from degradation and extinction and provides material for use by breeders. Despite being among the most important crops in the world, banana and plantain crop wild relatives are largely under‐represented in genebanks. Nevertheless, banana crop wild relative seed collections are in fact held in different countries, but these have not previously been part of reporting or analysis. To fill this gap, we firstly collated banana seed accession data from 13 institutions in 10 countries. These included 537 accessions containing an estimated 430,000 seeds of 56 species. We reviewed their taxonomic coverage and seed storage conditions including viability estimates. We found that seed accessions have low viability (25% mean) representing problems in seed storage and processing. Secondly, we surveyed 22 institutions involved in banana genetic resource conservation regarding the key constraints and knowledge gaps that institutions face related to banana seed conservation. Major constraints were identified including finding suitable material and populations to collect seeds from, lack of knowledge regarding optimal storage conditions and germination conditions. Thirdly, we carried out a conservation prioritization and gap analysis of Musaceae taxa, using established methods, to index representativeness. Overall, our conservation assessment showed that despite this extended data set banana crop wild relatives are inadequately conserved, with 51% of taxa not represented in seed collections at all; the average conservation assessment showing high priority for conservation according to the index. Finally, we provide recommendations for future collecting, research, and management, to conserve banana and plantain crop wild relatives in seed banks for future generations.
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Affiliation(s)
- Simon Kallow
- Royal Botanic Gardens Kew Millennium Seed Bank Ardingly UK
- Department of Biosystems Katholieke Universiteit Leuven Leuven Belgium
- Meise Botanic Garden Meise Belgium
| | - Arne Mertens
- Department of Biosystems Katholieke Universiteit Leuven Leuven Belgium
- Meise Botanic Garden Meise Belgium
| | - Steven B. Janssens
- Meise Botanic Garden Meise Belgium
- Biology Department Katholieke Universiteit Leuven Leuven Belgium
| | | | - John Dickie
- Royal Botanic Gardens Kew Millennium Seed Bank Ardingly UK
| | - Rony Swennen
- Department of Biosystems Katholieke Universiteit Leuven Leuven Belgium
- International Institute of Tropical Agriculture Kampala Uganda
| | - Bart Panis
- Department of Biosystems Katholieke Universiteit Leuven Leuven Belgium
- Bioversity International Leuven Belgium
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23
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Lofgren LA, Stajich JE. Fungal biodiversity and conservation mycology in light of new technology, big data, and changing attitudes. Curr Biol 2021; 31:R1312-R1325. [PMID: 34637742 PMCID: PMC8516061 DOI: 10.1016/j.cub.2021.06.083] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/15/2023]
Abstract
Fungi have successfully established themselves across seemingly every possible niche, substrate, and biome. They are fundamental to biogeochemical cycling, interspecies interactions, food production, and drug bioprocessing, as well as playing less heroic roles as difficult to treat human infections and devastating plant pathogens. Despite community efforts to estimate and catalog fungal diversity, we have only named and described a minute fraction of the fungal world. The identification, characterization, and conservation of fungal diversity is paramount to preserving fungal bioresources, and to understanding and predicting ecosystem cycling and the evolution and epidemiology of fungal disease. Although species and ecosystem conservation are necessarily the foundation of preserving this diversity, there is value in expanding our definition of conservation to include the protection of biological collections, ecological metadata, genetic and genomic data, and the methods and code used for our analyses. These definitions of conservation are interdependent. For example, we need metadata on host specificity and biogeography to understand rarity and set priorities for conservation. To aid in these efforts, we need to draw expertise from diverse fields to tie traditional taxonomic knowledge to data obtained from modern -omics-based approaches, and support the advancement of diverse research perspectives. We also need new tools, including an updated framework for describing and tracking species known only from DNA, and the continued integration of functional predictions to link genetic diversity to functional and ecological diversity. Here, we review the state of fungal diversity research as shaped by recent technological advancements, and how changing viewpoints in taxonomy, -omics, and systematics can be integrated to advance mycological research and preserve fungal biodiversity.
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Affiliation(s)
- Lotus A Lofgren
- Department of Microbiology and Plant Pathology, University of California-Riverside, Riverside, CA 92521, USA.
| | - Jason E Stajich
- Department of Microbiology and Plant Pathology, University of California-Riverside, Riverside, CA 92521, USA
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24
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Alexander GJ, Tolley KA, Maritz B, McKechnie A, Manger P, Thomson RL, Schradin C, Fuller A, Meyer L, Hetem RS, Cherry M, Conradie W, Bauer AM, Maphisa D, O'Riain J, Parker DM, Mlambo MC, Bronner G, Madikiza K, Engelbrecht A, Lee AT, Jansen van Vuuren B, Mandiwana-Neudani TG, Pietersen D, Venter JA, Somers MJ, Slotow R, Strauss WM, Humphries MS, Ryan PG, Kerley GI. Excessive red tape is strangling biodiversity research in South Africa. S AFR J SCI 2021. [DOI: 10.17159/sajs.2021/10787] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/05/2022] Open
Affiliation(s)
- Graham J. Alexander
- School of Animal, Plant and Environmental Sciences, University of the Witwatersrand, Johannesburg, South Africa
| | - Krystal A. Tolley
- School of Animal, Plant and Environmental Sciences, University of the Witwatersrand, Johannesburg, South Africa
- South African National Biodiversity Institute, Kirstenbosch Research Centre, Cape Town, South Africa
| | - Bryan Maritz
- Department of Biodiversity and Conservation Biology, University of the Western Cape, Cape Town, South Africa
| | - Andrew McKechnie
- South African Research Chair in Conservation Physiology, South African National Biodiversity Institute, Pretoria, South Africa
- Department of Zoology and Entomology, University of Pretoria, Pretoria, South Africa
| | - Paul Manger
- School of Anatomical Sciences, University of the Witwatersrand, Johannesburg, South Africa
| | - Robert L. Thomson
- FitzPatrick Institute of African Ornithology, University of Cape Town, Cape Town, South Africa
| | - Carsten Schradin
- School of Animal, Plant and Environmental Sciences, University of the Witwatersrand, Johannesburg, South Africa
- IPHC, CNRS, University of Strasbourg, Strasbourg, France
| | - Andrea Fuller
- Brain Function Research Group, School of Physiology, University of the Witwatersrand, Johannesburg, South Africa
- Department of Paraclinical Sciences and Centre for Veterinary Wildlife Studies, Faculty of Veterinary Science, University of Pretoria, Pretoria, South Africa
| | - Leith Meyer
- Brain Function Research Group, School of Physiology, University of the Witwatersrand, Johannesburg, South Africa
- Department of Paraclinical Sciences and Centre for Veterinary Wildlife Studies, Faculty of Veterinary Science, University of Pretoria, Pretoria, South Africa
| | - Robyn S. Hetem
- School of Animal, Plant and Environmental Sciences, University of the Witwatersrand, Johannesburg, South Africa
| | - Michael Cherry
- Department of Botany and Zoology, Stellenbosch University, Stellenbosch, South Africa
| | - Werner Conradie
- Port Elizabeth Museum (Bayworld), Port Elizabeth, South Africa
- Department of Nature Conservation Management, Natural Resource Science and Management Cluster, Nelson Mandela University, George, South Africa
| | - Aaron M. Bauer
- Department of Biology and Center for Biodiversity and Ecosystem Stewardship, Villanova University, Villanova, Pennsylvania, USA
| | - David Maphisa
- South African National Biodiversity Institute, Kirstenbosch Research Centre, Cape Town, South Africa
- .Statistics in Ecology, Environment and Conservation, Department of Statistical Sciences, University of Cape Town, Cape Town, South Africa
| | - Justin O'Riain
- Institute for Communities and Wildlife in Africa, Department of Biological Sciences, University of Cape Town, Cape Town, South Africa
| | - Daniel M. Parker
- School of Biology and Environmental Sciences, University of Mpumalanga, Mbombela, South Africa
- Wildlife and Reserve Management Research Group, Department of Zoology and Entomology, Rhodes University, Makhanda, South Africa
| | - Musa C. Mlambo
- Department of Freshwater Invertebrates, Albany Museum, Makhanda, South Africa
- Department of Zoology and Entomology, Rhodes University, Makhanda, South Africa
| | - Gary Bronner
- Institute for Communities and Wildlife in Africa, Department of Biological Sciences, University of Cape Town, Cape Town, South Africa
| | - Kim Madikiza
- School of Animal, Plant and Environmental Sciences, University of the Witwatersrand, Johannesburg, South Africa
| | - Adriaan Engelbrecht
- Department of Biodiversity and Conservation Biology, University of the Western Cape, Cape Town, South Africa
| | - Alan T.K. Lee
- FitzPatrick Institute of African Ornithology, University of Cape Town, Cape Town, South Africa
- Centre for Functional Biodiversity, University of KwaZulu-Natal, Pietermaritzburg, South Africa
| | - Bettine Jansen van Vuuren
- Centre for Ecological Genomics and Wildlife Conservation, University of Johannesburg, Johannesburg, South Africa
| | | | - Darren Pietersen
- Department of Zoology and Entomology, University of Pretoria, Pretoria, South Africa
| | - Jan A. Venter
- Department of Nature Conservation Management, Natural Resource Science and Management Cluster, Nelson Mandela University, George, South Africa
| | - Michael J. Somers
- Mammal Research Institute, Centre for Invasion Biology, University of Pretoria, Pretoria, South Africa
| | - Rob Slotow
- School of Life Sciences, University of Kwazulu-Natal, Pietermaritzburg, South Africa
| | - W. Maartin Strauss
- Department of Environmental Sciences, University of South Africa, Johannesburg, South Africa
| | - Marc S. Humphries
- School of Chemistry, University of the Witwatersrand, Johannesburg, South Africa
| | - Peter G. Ryan
- FitzPatrick Institute of African Ornithology, University of Cape Town, Cape Town, South Africa
| | - Graham I.H. Kerley
- Centre for African Conservation Ecology, Nelson Mandela University, Gqeberha, South Africa
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Engels JMM, Ebert AW. A Critical Review of the Current Global Ex Situ Conservation System for Plant Agrobiodiversity. II. Strengths and Weaknesses of the Current System and Recommendations for Its Improvement. PLANTS (BASEL, SWITZERLAND) 2021; 10:1904. [PMID: 34579439 PMCID: PMC8472064 DOI: 10.3390/plants10091904] [Citation(s) in RCA: 14] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 08/08/2021] [Revised: 09/05/2021] [Accepted: 09/09/2021] [Indexed: 02/08/2023]
Abstract
In this paper, we review gene bank operations that have an influence on the global conservation system, with the intention to identify critical aspects that should be improved for optimum performance. We describe the role of active and base collections and the importance of linking germplasm conservation and use, also in view of new developments in genomics and phenomics that facilitate more effective and efficient conservation and use of plant agrobiodiversity. Strengths, limitations, and opportunities of the existing global ex situ conservation system are discussed, and measures are proposed to achieve a rational, more effective, and efficient global system for germplasm conservation and sustainable use. The proposed measures include filling genetic and geographic gaps in current ex situ collections; determining unique accessions at the global level for long-term conservation in virtual base collections; intensifying existing international collaborations among gene banks and forging collaborations with the botanic gardens community; increasing investment in conservation research and user-oriented supportive research; improved accession-level description of the genetic diversity of crop collections; improvements of the legal and policy framework; and oversight of the proposed network of global base collections.
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Wynberg R, Andersen R, Laird S, Kusena K, Prip C, Westengen OT. Farmers' Rights and Digital Sequence Information: Crisis or Opportunity to Reclaim Stewardship Over Agrobiodiversity? FRONTIERS IN PLANT SCIENCE 2021; 12:686728. [PMID: 34484258 PMCID: PMC8409524 DOI: 10.3389/fpls.2021.686728] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 03/27/2021] [Accepted: 07/09/2021] [Indexed: 06/13/2023]
Abstract
Contestations about the way in which digital sequence information is used and regulated have created stumbling blocks across multiple international policy processes. Such schisms have profound implications for the way in which we manage and conceptualize agrobiodiversity and its benefits. This paper explores the relationship between farmers' rights, as recognized in the International Treaty on Plant Genetic Resources for Food and Agriculture, and the dematerialization of genetic resources. Using concepts of "stewardship" and "ownership" we emphasize the need to move away from viewing agrobiodiversity as a commodity that can be owned, toward a strengthened, proactive and expansive stewardship approach that recognizes plant genetic resources for food and agriculture as a public good which should be governed as such. Through this lens we analyze the relationship between digital sequence information and different elements of farmers' rights to compare and contrast implications for the governance of digital sequence information. Two possible parallel pathways are presented, the first envisaging an enhanced multilateral system that includes digital sequence information and which promotes and enhances the realization of farmers' rights; and the second a more radical approach that folds together concepts of stewardship, farmers' rights, and open source science. Farmers' rights, we suggest, may well be the linchpin for finding fair and equitable solutions for digital sequence information beyond the bilateral and transactional approach that has come to characterize access and benefit sharing under the Convention on Biological Diversity. Existing policy uncertainties could be seized as an unexpected but serendipitous opportunity to chart an alternative and visionary pathway for the rights of farmers and other custodians of plant genetic resources.
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Affiliation(s)
- Rachel Wynberg
- Department of Environmental and Geographical Science, University of Cape Town, Cape Town, South Africa
| | | | - Sarah Laird
- People and Plants International, Bristol, VT, United States
| | - Kudzai Kusena
- Department of Environmental and Geographical Science, University of Cape Town, Cape Town, South Africa
- Department of Research and Specialist Services, National Genebank of Zimbabwe, Harare, Zimbabwe
| | | | - Ola Tveitereid Westengen
- Department of International Environment and Development Studies (Noragric), Norwegian University of Life Sciences, Aas, Norway
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27
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Collins JE, Rabone M, Vanagt T, Amon DJ, Gobin J, Huys I. Strengthening the global network for sharing of marine biological collections: recommendations for a new agreement for biodiversity beyond national jurisdiction. ICES JOURNAL OF MARINE SCIENCE : JOURNAL DU CONSEIL 2021; 78:305-314. [PMID: 33814897 PMCID: PMC7988798 DOI: 10.1093/icesjms/fsaa227] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 05/05/2020] [Revised: 09/28/2020] [Accepted: 11/04/2020] [Indexed: 11/13/2022]
Abstract
Biological collections are fundamental to marine scientific research and understanding of biodiversity at various scales. Despite their key importance, sample collections and the institutes that house them are often underfunded and receive comparatively little attention in the discussions associated with global biodiversity agreements. Furthermore, access to collections can be limited by inadequate systems, infrastructure, and networks. With negotiations underway for a new implementing agreement on biodiversity beyond national jurisdiction, marine genetic resources (MGR), including questions on the sharing of benefits, remains the most debated and contentious element. Disparities remain between States regarding access to and utilization of marine biological samples (including MGR) from areas beyond national jurisdiction. Addressing capacity gaps related to collections could provide a point of agreement during negotiations and enhance global inclusivity in access to and utilization of MGR. Here, we examine both existing capacity and regional gaps in marine collections. We propose the strengthening of a distributed network of marine biological collections, building on existing initiatives and emphasizing best practices to bridge regional gaps. Our recommendations include: promoting scientific best practice for the curation of collections; alignment with ocean observing, and sampling initiatives; a potential pairing scheme for collections in developing and developed States; raising awareness of collections and benefits to marine science including through a global registry/directory; and promoting sustainable funding mechanisms to support collections and sustain global generation of contributors and users.
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Affiliation(s)
- Jane Eva Collins
- ABSint, Bruges, Belgium
- Faculty of Pharmaceutical Sciences, Clinical Pharmacology and Pharmacotherapy, KU Leuven, Leuven, Belgium
| | - Muriel Rabone
- Life Sciences Department, Natural History Museum, London, UK
| | | | - Diva J Amon
- Life Sciences Department, Natural History Museum, London, UK
| | - Judith Gobin
- Department of Life Sciences, University of the West Indies, St. Augustine, Trinidad and Tobago
| | - Isabelle Huys
- Faculty of Pharmaceutical Sciences, Clinical Pharmacology and Pharmacotherapy, KU Leuven, Leuven, Belgium
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28
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Holowko MB, Frow EK, Reid JC, Rourke M, Vickers CE. Building a biofoundry. Synth Biol (Oxf) 2020; 6:ysaa026. [PMID: 33817343 DOI: 10.1093/synbio/ysaa026] [Citation(s) in RCA: 31] [Impact Index Per Article: 6.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/13/2020] [Revised: 10/26/2020] [Accepted: 11/12/2020] [Indexed: 01/21/2023] Open
Abstract
A biofoundry provides automation and analytics infrastructure to support the engineering of biological systems. It allows scientists to perform synthetic biology and aligned experimentation on a high-throughput scale, massively increasing the solution space that can be examined for any given problem or question. However, establishing a biofoundry is a challenging undertaking, with numerous technical and operational considerations that must be addressed. Using collated learnings, here we outline several considerations that should be addressed prior to and during establishment. These include drivers for establishment, institutional models, funding and revenue models, personnel, hardware and software, data management, interoperability, client engagement and biosecurity issues. The high cost of establishment and operation means that developing a long-term business model for biofoundry sustainability in the context of funding frameworks, actual and potential client base, and costing structure is critical. Moreover, since biofoundries are leading a conceptual shift in experimental design for bioengineering, sustained outreach and engagement with the research community are needed to grow the client base. Recognition of the significant, long-term financial investment required and an understanding of the complexities of operationalization is critical for a sustainable biofoundry venture. To ensure state-of-the-art technology is integrated into planning, extensive engagement with existing facilities and community groups, such as the Global Biofoundries Alliance, is recommended.
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Affiliation(s)
- Maciej B Holowko
- CSIRO Synthetic Biology Future Science Platform, CSIRO Land and Water, Brisbane, QLD 4102, Australia
| | - Emma K Frow
- School for the Future of Innovation in Society and School of Biological & Health Systems Engineering, Arizona State University, Tempe, AZ 85287, USA
| | - Janet C Reid
- CSIRO Synthetic Biology Future Science Platform, CSIRO Land and Water, Brisbane, QLD 4102, Australia
| | - Michelle Rourke
- CSIRO Synthetic Biology Future Science Platform, CSIRO Land and Water, Brisbane, QLD 4102, Australia.,Law Futures Centre, Griffith Law School, Griffith University, Nathan, QLD 4111, Australia
| | - Claudia E Vickers
- CSIRO Synthetic Biology Future Science Platform, CSIRO Land and Water, Brisbane, QLD 4102, Australia.,ARC Centre of Excellence in Synthetic Biology, Queensland University of Technology, Brisbane, QLD 4001, Australia
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29
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Bond MR, Scott D. Digital biopiracy and the (dis)assembling of the Nagoya Protocol. GEOFORUM; JOURNAL OF PHYSICAL, HUMAN, AND REGIONAL GEOSCIENCES 2020; 117:24-32. [PMID: 33041359 PMCID: PMC7536632 DOI: 10.1016/j.geoforum.2020.09.001] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/28/2019] [Revised: 06/22/2020] [Accepted: 09/02/2020] [Indexed: 06/11/2023]
Abstract
Technological leaps in DNA sequencing and synthesis are disrupting tenuous access and benefit-sharing (ABS) arrangements between 'users' and 'providers' of genetic resources. For some this signals a new era of open-source gene banks to address global challenges, but to others it threatens a new wave of unjust digital biopiracy. This paper explores the issue of digital sequence information (DSI) at the 2016 Cancun negotiations of the UN Convention on Biological Diversity and its Nagoya Protocol on ABS, and its continued relevance today. While some research has addressed potential solutions to digital sequencing and ABS, little attention has been paid to the problematization of the issue itself. This paper addresses this gap with a fine-grained view of the negotiations as an ethnographic site of contestation. We approach the Nagoya Protocol as an assemblage seeking to govern ABS. We trace how the unruly component of DSI threatens this already fragile assemblage by disrupting simplified notions of genetic resources, scientific discovery, and R&D. Our data from the negotiations reveals three major points of tension: the materiality of genetic resources; the problem's novelty; and the problem's urgency. Two opposing solutions raised in response to these contestations reveal underlying faultlines that we argue will continue to destabilise the broader ABS assemblage if left unresolved. Our attention to processes of assemblage (trans)formation offers insights to the historically fragile arrangements of ABS and, more broadly, assemblages of global environmental governance in the context of rapid technological change.
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Affiliation(s)
- Molly R Bond
- School of Geographical Sciences, University of Bristol, University Road, Bristol BS8 1SS, United Kingdom
| | - Deborah Scott
- Engineering Life, Science, Technology & Innovation Studies, University of Edinburgh, Chisholm House G.14, High School Yards, Edinburgh EH1 1LZ, United Kingdom
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30
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Johnson SB. Advancing Global Health Equity in the COVID-19 Response: Beyond Solidarity. JOURNAL OF BIOETHICAL INQUIRY 2020; 17:703-707. [PMID: 32840837 PMCID: PMC7445720 DOI: 10.1007/s11673-020-10008-9] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/11/2020] [Accepted: 08/03/2020] [Indexed: 05/04/2023]
Abstract
In the coming weeks and months SARS-CoV-2 may ravage countries with weak health systems and populations disproportionately affected by HIV, tuberculosis (TB), and other infectious diseases. Without safeguards and proper attention to global health equity and justice, the effects of this pandemic are likely to exacerbate existing health and socio-economic inequalities. This paper argues that achieving global health equity in the context of COVID-19 will require that notions of reciprocity and relational equity are introduced to the response.
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Affiliation(s)
- Stephanie B Johnson
- Wellcome Centre for Ethics and Humanities, University of Oxford, Oxford, UK.
- Ethox Centre, University of Oxford, Oxford, UK.
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31
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McCouch S, Navabi ZK, Abberton M, Anglin NL, Barbieri RL, Baum M, Bett K, Booker H, Brown GL, Bryan GJ, Cattivelli L, Charest D, Eversole K, Freitas M, Ghamkhar K, Grattapaglia D, Henry R, Valadares Inglis MC, Islam T, Kehel Z, Kersey PJ, King GJ, Kresovich S, Marden E, Mayes S, Ndjiondjop MN, Nguyen HT, Paiva SR, Papa R, Phillips PWB, Rasheed A, Richards C, Rouard M, Amstalden Sampaio MJ, Scholz U, Shaw PD, Sherman B, Staton SE, Stein N, Svensson J, Tester M, Montenegro Valls JF, Varshney R, Visscher S, von Wettberg E, Waugh R, Wenzl P, Rieseberg LH. Mobilizing Crop Biodiversity. MOLECULAR PLANT 2020; 13:1341-1344. [PMID: 32835887 DOI: 10.1016/j.molp.2020.08.011] [Citation(s) in RCA: 37] [Impact Index Per Article: 7.4] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/18/2020] [Revised: 08/19/2020] [Accepted: 08/19/2020] [Indexed: 05/10/2023]
Affiliation(s)
- Susan McCouch
- Plant Breeding and Genetics, School of Integrated Plant Sciences, Cornell University, Ithaca, NY, 14853, USA
| | - Zahra Katy Navabi
- DivSeek, Global Institute for Food Security, 110 Gymnasium Place, University of Saskatchewan, Saskatoon, SK, S7N 0W9, Canada; Global Institute for Food Security, 110 Gymnasium Place, University of Saskatchewan, Saskatoon, SK, S7N 4J8, Canada
| | - Michael Abberton
- International Institute of Tropical Agriculture (IITA), PMB 5320, Oyo Rd, Ibadan, Nigeria
| | - Noelle L Anglin
- International Potato Center (CIP) 1895 Avenida La Molina, Lima Peru 12, Lima 15023, Peru
| | - Rosa Lia Barbieri
- Embrapa Genetic Resources and Biotechnology, Parque Estação Biológica, Final Av W5 Norte, Caixa Postal 02372, 70770-917 - Brasília DF, Brazil
| | - Michael Baum
- International Center for Agricultural Research in the Dry Areas (ICARDA), Station Exp. INRA-Quich. Rue Hafiane Cherkaoui. Agdal. Rabat - Instituts, 10111, Rabat, Morocco
| | - Kirstin Bett
- Department of Plant Sciences, University of Saskatchewan, 51 Campus Dr., Saskatoon, SK S7N 5A8, Canada
| | - Helen Booker
- Department of Plant Agriculture, University of Guelph, Rm 316, Crop Science Bldg, 50 Stone Rd E, Guelph, ON N1G 2W1, Canada
| | - Gerald L Brown
- Genome Prairie, 111 Research Drive, Suite 101, Saskatoon, SK, S7N 3R2, Canada
| | - Glenn J Bryan
- The James Hutton Institute, Errol Road, Invergowrie, Dundee, DD2 5DA, UK
| | - Luigi Cattivelli
- CREA, Research Centre for Genomics and Bioinformatics, via San Protaso 302, Fiorenzuola d'Arda, 29017, Italy
| | - David Charest
- Genome British Columbia, 400-575 West 8th Avenue, Vancouver, BC, V5Z 0C4, Canada
| | - Kellye Eversole
- International Wheat Genome Sequencing Consortium, 2841 NE Marywood Ct, Lee's Summit, MO, 64086, USA
| | - Marcelo Freitas
- Embrapa Genetic Resources and Biotechnology, Parque Estação Biológica, Final Av W5 Norte, Caixa Postal 02372, 70770-917 - Brasília DF, Brazil
| | - Kioumars Ghamkhar
- Forage Science, Grasslands Research Centre, AgResearch, Palmerston North, 4410, New Zealand
| | - Dario Grattapaglia
- Embrapa Genetic Resources and Biotechnology, Parque Estação Biológica, Final Av W5 Norte, Caixa Postal 02372, 70770-917 - Brasília DF, Brazil
| | - Robert Henry
- Queensland Alliance for Agriculture and Food Innovation, University of Queensland, Brisbane, QLD 4072, Australia
| | - Maria Cleria Valadares Inglis
- Embrapa Genetic Resources and Biotechnology, Parque Estação Biológica, Final Av W5 Norte, Caixa Postal 02372, 70770-917 - Brasília DF, Brazil
| | - Tofazzal Islam
- Institute of Biotechnology and Genetic Engineering (IBGE), Bangabandhu Sheikh Mujibur Rahman Agricultural University, Gazipur 1706, Bangladesh
| | - Zakaria Kehel
- International Center for Agricultural Research in the Dry Areas (ICARDA), Station Exp. INRA-Quich. Rue Hafiane Cherkaoui. Agdal. Rabat - Instituts, 10111, Rabat, Morocco
| | - Paul J Kersey
- Royal Botanic Gardens, Kew, Richmond, Surrey, TW9 3AE, UK
| | - Graham J King
- Southern Cross University, PO Box 157, Lismore, NSW 2480, Australia
| | - Stephen Kresovich
- Feed the Future Innovation Lab for Crop Improvement, 431 Weill Hall, Cornell University, Ithaca, NY, 14853, USA
| | - Emily Marden
- Department of Botany and Biodiversity Research Centre, University of British Columbia, Vancouver, BC V6R 2A5, Canada
| | - Sean Mayes
- Crops For the Future (UK) CIC 76-80 Baddow Road, Chelmsford, Essex, CM2 7PJ, UK
| | - Marie Noelle Ndjiondjop
- Africa Rice Center (AfricaRice), Mbe Research Station, Bouaké, 01 BP 2511 Bouaké, Côte d'Ivoire
| | - Henry T Nguyen
- University of Missouri, Division of Plant Sciences, 25 Agriculture Lab Bldg, College of Agriculture, Food and Natural Resources, University of Missouri, Columbia, MO 65211, USA
| | - Samuel Rezende Paiva
- Embrapa Genetic Resources and Biotechnology, Parque Estação Biológica, Final Av W5 Norte, Caixa Postal 02372, 70770-917 - Brasília DF, Brazil
| | - Roberto Papa
- Università Politecnica delle Marche, D3A-Dipartimento di Scienze Agrarie, Alimentari e Ambientali, Via Brecce Bianche, 60131, Ancona, Italy
| | - Peter W B Phillips
- Johnson Shoyama Graduate School of Public Policy, University of Saskatchewan, 101 Diefenbaker Place, Saskatoon, S7N 5B8, Canada
| | - Awais Rasheed
- CIMMYT-China office, Beijing 100081, Beijing, P.R. China
| | - Christopher Richards
- USDA-ARS National Laboratory for Genetic Resources Preservation, 1111 South Mason St, Fort Collins, CO, 80521, USA
| | - Mathieu Rouard
- Bioversity International, Parc Scientifique Agropolis II, 34397, Montpellier, Cedex 5, France
| | - Maria Jose Amstalden Sampaio
- Embrapa Genetic Resources and Biotechnology, Parque Estação Biológica, Final Av W5 Norte, Caixa Postal 02372, 70770-917 - Brasília DF, Brazil
| | - Uwe Scholz
- Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), Gatersleben, Corrensstr. 3, D-06466 Seeland, Germany
| | - Paul D Shaw
- The James Hutton Institute, Errol Road, Invergowrie, Dundee, DD2 5DA, UK
| | - Brad Sherman
- Law School, University of Queensland, St Lucia, QLD, 4072, Australia
| | - S Evan Staton
- Department of Botany and Biodiversity Research Centre, University of British Columbia, Vancouver, BC V6R 2A5, Canada
| | - Nils Stein
- Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), Gatersleben, Corrensstr. 3, D-06466 Seeland, Germany; CiBreed - Center for Integrated Breeding Research, Department of Crop Sciences, Georg-August University Göttingen, Von Siebold Straße 8, D-37075 Göttingen, Germany
| | | | - Mark Tester
- King Abdullah University of Science & Technology (KAUST), Thuwal, 23955-6900, Saudi Arabia
| | - Jose Francisco Montenegro Valls
- Embrapa Genetic Resources and Biotechnology, Parque Estação Biológica, Final Av W5 Norte, Caixa Postal 02372, 70770-917 - Brasília DF, Brazil
| | - Rajeev Varshney
- Center of Excellence in Genomics & Systems Biology, International Crops Research Institute for the Semi-Arid Tropics (ICRISAT), Patancheru - 502 324, Telangana State, India
| | - Stephen Visscher
- Global Institute for Food Security, 110 Gymnasium Place, University of Saskatchewan, Saskatoon, SK, S7N 4J8, Canada
| | - Eric von Wettberg
- University of Vermont, 63 Carrigan Drive, Jeffords Hall, Burlington, VT, 05405, USA
| | - Robbie Waugh
- The James Hutton Institute, Errol Road, Invergowrie, Dundee, DD2 5DA, UK; School of Agriculture and Wine & Waite Research Institute, University of Adelaide, Waite Campus, Glen Osmond, SA, 5064, Australia
| | - Peter Wenzl
- Centro Internacional de Agricultura Tropical (CIAT), Km 17 Recta Cali-Palmira, 763537 Cali, Colombia
| | - Loren H Rieseberg
- Department of Botany and Biodiversity Research Centre, University of British Columbia, Vancouver, BC V6R 2A5, Canada.
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Gaffney J, Tibebu R, Bart R, Beyene G, Girma D, Kane NA, Mace ES, Mockler T, Nickson TE, Taylor N, Zastrow-Hayes G. Open access to genetic sequence data maximizes value to scientists, farmers, and society. GLOBAL FOOD SECURITY-AGRICULTURE POLICY ECONOMICS AND ENVIRONMENT 2020. [DOI: 10.1016/j.gfs.2020.100411] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/28/2023]
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Périz M, Pérez-Cano FJ, Cambras T, Franch À, Best I, Pastor-Soplin S, Castell M, Massot-Cladera M. Attenuating Effect of Peruvian Cocoa Populations on the Acute Asthmatic Response in Brown Norway Rats. Nutrients 2020; 12:E2301. [PMID: 32751867 PMCID: PMC7469048 DOI: 10.3390/nu12082301] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/15/2020] [Revised: 07/17/2020] [Accepted: 07/24/2020] [Indexed: 12/15/2022] Open
Abstract
Cocoa contains bioactive components, which vary according to genetic and environmental factors. The present study aimed to ascertain the anti-allergic properties of native Peruvian cocoa populations ("Blanco de Piura" or BPC, "Amazonas Peru" or APC, "Criollo de Montaña" or CMC, "Chuncho" or CCC, and an ordinary cocoa or OC). To do so, after an initial in vitro approach, an in vivo study focused on the induction of an anaphylactic response associated with allergic asthma in Brown Norway rats was carried out. Based on their polyphenol content, antioxidant activity and in vitro effects, the APC and CMC were selected to be included in the in vivo study. Cocoa diets were tested in a model of allergic asthma in which anaphylactic response was assessed by changes in body temperature, motor activity and body weight. The concentration of specific immunoglobulin E (IgE), mast cell protease and leukotrienes was also quantified in serum and/or bronchoalveolar lavage fluid. CMC and OC populations exhibited a protective effect on the allergic asthma rat model as evidenced by means of a partial protection against anaphylactic response and, above all, in the synthesis of IgE and the release of mast cell protease.
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Affiliation(s)
- Marta Périz
- Secció de Fisiologia, Departament de Bioquímica i Fisiologia, Facultat de Farmàcia i Ciències de l’Alimentació, Universitat de Barcelona (UB), 08028 Barcelona, Spain; (M.P.); (F.J.P.-C.); (T.C.); (À.F.); (M.C.)
- Institut de Recerca en Nutrició i Seguretat Alimentària (INSA-UB), UB, 08921 Santa Coloma de Gramenet, Spain
| | - Francisco J. Pérez-Cano
- Secció de Fisiologia, Departament de Bioquímica i Fisiologia, Facultat de Farmàcia i Ciències de l’Alimentació, Universitat de Barcelona (UB), 08028 Barcelona, Spain; (M.P.); (F.J.P.-C.); (T.C.); (À.F.); (M.C.)
- Institut de Recerca en Nutrició i Seguretat Alimentària (INSA-UB), UB, 08921 Santa Coloma de Gramenet, Spain
| | - Trinitat Cambras
- Secció de Fisiologia, Departament de Bioquímica i Fisiologia, Facultat de Farmàcia i Ciències de l’Alimentació, Universitat de Barcelona (UB), 08028 Barcelona, Spain; (M.P.); (F.J.P.-C.); (T.C.); (À.F.); (M.C.)
| | - Àngels Franch
- Secció de Fisiologia, Departament de Bioquímica i Fisiologia, Facultat de Farmàcia i Ciències de l’Alimentació, Universitat de Barcelona (UB), 08028 Barcelona, Spain; (M.P.); (F.J.P.-C.); (T.C.); (À.F.); (M.C.)
- Institut de Recerca en Nutrició i Seguretat Alimentària (INSA-UB), UB, 08921 Santa Coloma de Gramenet, Spain
| | - Ivan Best
- Programa Cacao, Ingeniería Agroforestal, Facultad de Ciencias Ambientales, Universidad Científica del Sur, Lima 15842, Peru; (I.B.); (S.P.-S.)
- Unidad de Investigación en Nutrición, Salud, Alimentos Funcionales y Nutracéuticos, Universidad San Ignacio de Loyola, Lima 15024, Peru
| | - Santiago Pastor-Soplin
- Programa Cacao, Ingeniería Agroforestal, Facultad de Ciencias Ambientales, Universidad Científica del Sur, Lima 15842, Peru; (I.B.); (S.P.-S.)
| | - Margarida Castell
- Secció de Fisiologia, Departament de Bioquímica i Fisiologia, Facultat de Farmàcia i Ciències de l’Alimentació, Universitat de Barcelona (UB), 08028 Barcelona, Spain; (M.P.); (F.J.P.-C.); (T.C.); (À.F.); (M.C.)
- Institut de Recerca en Nutrició i Seguretat Alimentària (INSA-UB), UB, 08921 Santa Coloma de Gramenet, Spain
| | - Malén Massot-Cladera
- Secció de Fisiologia, Departament de Bioquímica i Fisiologia, Facultat de Farmàcia i Ciències de l’Alimentació, Universitat de Barcelona (UB), 08028 Barcelona, Spain; (M.P.); (F.J.P.-C.); (T.C.); (À.F.); (M.C.)
- Institut de Recerca en Nutrició i Seguretat Alimentària (INSA-UB), UB, 08921 Santa Coloma de Gramenet, Spain
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Rourke M, Eccleston-Turner M, Phelan A, Gostin L. Policy opportunities to enhance sharing for pandemic research. Science 2020; 368:716-718. [PMID: 32409464 DOI: 10.1126/science.abb9342] [Citation(s) in RCA: 20] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/02/2022]
Affiliation(s)
- Michelle Rourke
- CSIRO, Synthetic Biology Future Science Platform, Brisbane, Queensland, Australia.,Law Futures Centre, Griffith University, Nathan, Queensland, Australia
| | | | - Alexandra Phelan
- Center for Global Health Science and Security, Georgetown University, Washington, DC, USA.,O'Neill Institute for National and Global Health Law, Georgetown University Law Center, Washington, DC, USA
| | - Lawrence Gostin
- O'Neill Institute for National and Global Health Law, Georgetown University Law Center, Washington, DC, USA.
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