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Lewis JA, Frost VJ, Heard MJ. Examining the potential impacts of a coastal renourishment project on the presence and abundance of Escherichia coli. PLoS One 2024; 19:e0304061. [PMID: 38787843 PMCID: PMC11125542 DOI: 10.1371/journal.pone.0304061] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/07/2024] [Accepted: 05/06/2024] [Indexed: 05/26/2024] Open
Abstract
Erosion poses a significant threat to oceanic beaches worldwide. To combat this threat, management agencies often utilize renourishment, which supplements eroded beaches with offsite sand. This process can alter the physical characteristics of the beach and can influence the presence and abundance of microbial communities. In this study, we examined how an oceanic beach renourishment project may have impacted the presence and abundance of Escherichia coli (E. coli), a common bacteria species, and sand grain size, a sediment characteristic that can influence bacterial persistence. Using an observational field approach, we quantified the presence and abundance of E. coli in sand (from sub-tidal, intertidal, and dune zones on the beach) and water samples at study sites in both renourished and non-renourished sections of Folly Beach, South Carolina, USA in 2014 and 2015. In addition, we also measured how renourishment may have impacted sand grain size by quantifying the relative frequency of grain sizes (from sub-tidal, intertidal, and dune zones on the beach) at both renourished and non-renourished sites. Using this approach, we found that E. coli was present in sand samples in all zones of the beach and at each of our study sites in both years of sampling but never in water samples. Additionally, we found that in comparison to non-renourished sections, renourished sites had significantly higher abundances of E. coli and coarser sand grains in the intertidal zone, which is where renourished sand is typically placed. However, these differences were only present in 2014 and were not detected when we resampled the study sites in 2015. Collectively, our findings show that E. coli can be commonly found in this sandy beach microbial community. In addition, our results suggest that renourishment has the potential to alter both the physical structure of the beach and the microbial community but that these impacts may be short-lived.
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Affiliation(s)
- Jordan A. Lewis
- Department of Biology, Winthrop University, Rock Hill, South Carolina, United States of America
- Department of Ecology and Evolutionary Biology, Yale University, New Haven, Connecticut, United States of America
| | - Victoria J. Frost
- Department of Biology, Winthrop University, Rock Hill, South Carolina, United States of America
| | - Matthew J. Heard
- Department of Biology, Belmont University, Nashville, Tennessee, United States of America
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2
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Leri AC, Fassihi GE, Lundquist MJ, Khan M, Arguin ML. Vertical stratification and seasonality of fecal indicator bacteria in New York City playground sandboxes. ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY 2024; 273:116152. [PMID: 38417319 DOI: 10.1016/j.ecoenv.2024.116152] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/13/2023] [Revised: 02/02/2024] [Accepted: 02/22/2024] [Indexed: 03/01/2024]
Abstract
Sandboxes in public play spaces afford a crucial opportunity for urban children to engage in naturalistic play that fosters development of cognitive, social, and motor skills. As open pits, sandboxes in New York City public playgrounds are potentially exposed to fecal inputs from various sources, including wild and domestic animals. A longitudinal study of thirteen sandboxes located in public playgrounds on the east side of Manhattan reveals ubiquity of the fecal indicator bacteria enterococci and Escherichia coli through all seasons. The highest concentrations of bacteria occur in surface sand (n = 42; mean enterococci 230 MPN/g and E. coli 182 MPN/g dry weight), with significantly lower levels at depths below the surface (n = 35; mean enterococci 21 MPN/g and E. coli 12 MPN/g dry weight), a stratification consistent with fecal loading at the surface. Generalized linear mixed models indicate that sand depth (surface vs. underlayers) is the most influential variable affecting bacterial levels (P <0.001 for both enterococci and E. coli), followed by sampling season (P <0.001 for both). Bacterial concentrations do not vary significantly as a function of playground location or ZIP code within the study area. Children's exposure while playing in sandboxes likely reaches 105 enterococci and 104E. coli in a typical play period. Microbial source tracking to identify fecal hosts reveals dog, bird, and human biomarkers in low concentrations. Open sandbox microcosms installed at ground level in the urban environment of Manhattan are fouled by enterococci and E. coli within two weeks, while adjacent closed microcosms exhibit no fecal contamination over a 33-day sampling period. Collectively, our results indicate that increasing the frequency of sand refills and covering sandboxes during times of disuse would be straightforward management strategies to mitigate fecal contamination in playground sandboxes.
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Affiliation(s)
- Alessandra C Leri
- Department of Natural Sciences, Marymount Manhattan College, 221 E 71st St., New York, NY 10021, United States.
| | - G Eliana Fassihi
- Department of Natural Sciences, Marymount Manhattan College, 221 E 71st St., New York, NY 10021, United States
| | - Matthew J Lundquist
- Department of Natural Sciences, Marymount Manhattan College, 221 E 71st St., New York, NY 10021, United States
| | - Marjan Khan
- Department of Natural Sciences, Marymount Manhattan College, 221 E 71st St., New York, NY 10021, United States
| | - Mariette L Arguin
- P.S. 77 Lower Lab School, 1700 3rd Ave., New York, NY 10128, United States
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3
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Furlan JPR, Sellera FP, Stehling EG. Sand as a vehicle for exposing of humans and animals to WHO priority pathogens: A public health issue hidden in the ground. J Infect Public Health 2023; 16:2066-2067. [PMID: 37950971 DOI: 10.1016/j.jiph.2023.10.015] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/31/2023] [Revised: 06/22/2023] [Accepted: 10/09/2023] [Indexed: 11/13/2023] Open
Affiliation(s)
- João Pedro Rueda Furlan
- Department of Clinical Analyses, Toxicology and Food Science, School of Pharmaceutical Sciences of Ribeirão Preto, University of São Paulo, Brazil.
| | - Fábio P Sellera
- Department of Internal Medicine, School of Veterinary Medicine and Animal Science, University of São Paulo, São Paulo, Brazil; School of Veterinary Medicine, Metropolitan University of Santos, Santos, Brazil
| | - Eliana Guedes Stehling
- Department of Clinical Analyses, Toxicology and Food Science, School of Pharmaceutical Sciences of Ribeirão Preto, University of São Paulo, Brazil
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4
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Duke BM, Emery KA, Dugan JE, Hubbard DM, Joab BM. Uptake of polycyclic aromatic hydrocarbons via high-energy water accommodated fraction (HEWAF) by beach hoppers (Amphipoda, Talitridae) using different sandy beach exposure pathways. MARINE POLLUTION BULLETIN 2023; 190:114835. [PMID: 37023547 DOI: 10.1016/j.marpolbul.2023.114835] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/15/2022] [Revised: 02/13/2023] [Accepted: 03/10/2023] [Indexed: 06/19/2023]
Abstract
Sandy beach ecosystems are highly dynamic coastal environments subject to a variety of anthropogenic pressures and impacts. Pollution from oil spills can damage beach ecosystems through the toxic effects of hydrocarbons on organisms and the disruptive nature of large-scale clean-up practices. On temperate sandy beaches, intertidal talitrid amphipods are primary consumers of macrophyte wrack subsidies and serve as prey for higher trophic level consumers, such as birds and fish. These integral organisms of the beach food web can be exposed to hydrocarbons by direct contact with oiled sand through burrowing and by the consumption of oiled wrack. We experimentally evaluated the primary polycyclic aromatic hydrocarbon (PAH) exposure pathway via high-energy water accommodated fraction (HEWAF) for a species of talitrid amphipod (Megalorchestia pugettensis). Our results indicated that tissue PAH concentrations in talitrids were six-fold higher in treatments that included oiled sand compared to those with only oiled kelp and the controls.
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Affiliation(s)
- Bryand M Duke
- National Oceanic and Atmospheric Administration, St. Petersburg, FL 33701, United States of America.
| | - Kyle A Emery
- Marine Science Institute, UC Santa Barbara, Santa Barbara, CA 93106, United States of America; Department of Geography, UC Los Angeles, Los Angeles, CA 90095, United States of America
| | - Jenifer E Dugan
- Marine Science Institute, UC Santa Barbara, Santa Barbara, CA 93106, United States of America
| | - David M Hubbard
- Marine Science Institute, UC Santa Barbara, Santa Barbara, CA 93106, United States of America
| | - Bruce M Joab
- Office of Spill Prevention and Response (OSPR), California Department of Fish and Wildlife, 95605, United States of America
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5
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Carducci A, Federigi I, Balestri E, Lardicci C, Castelli A, Maltagliati F, Zhao H, Menicagli V, Valente R, De Battisti D, Verani M. Virus contamination and infectivity in beach environment: Focus on sand and stranded material. MARINE POLLUTION BULLETIN 2022; 185:114342. [PMID: 36395711 DOI: 10.1016/j.marpolbul.2022.114342] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/15/2022] [Revised: 11/01/2022] [Accepted: 11/02/2022] [Indexed: 06/16/2023]
Abstract
To assess the exposure of beachgoers to viruses, a study on seawater, sand, and beach-stranded material was carried out, searching for human viruses, fecal indicator organisms, and total fungi. Moreover, for the first time, the genome persistence and infectivity of two model viruses was studied in laboratory-spiked sand and seawater samples during a one-week experiment. Viral genome was detected in 13.6 % of the environmental samples, but it was not infectious (Human Adenovirus - HAdV, and enterovirus). Norovirus and SARS-CoV-2 were not detected. The most contaminated samples were from sand and close to riverine discharges. In lab-scale experiments, the infectivity of HAdV5 decreased by ~1.5-Log10 in a week, the one of Human Coronavirus-229E disappeared in <3 h in sand. The genome of both viruses persisted throughout the experiment. Our results confirm viral contamination of the beach and suggest HAdV as an index pathogen for beach monitoring and quantitative risk assessment.
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Affiliation(s)
- Annalaura Carducci
- Laboratory of Hygiene and Environmental Virology, Department of Biology, University of Pisa, Via S. Zeno 35/39, 56127 Pisa, Italy
| | - Ileana Federigi
- Laboratory of Hygiene and Environmental Virology, Department of Biology, University of Pisa, Via S. Zeno 35/39, 56127 Pisa, Italy.
| | - Elena Balestri
- Unit of Marine Biology and Ecology, Department of Biology, University of Pisa, via Derna 1, 56126 Pisa, Italy
| | - Claudio Lardicci
- Department of Earth Sciences, University of Pisa, via S. Maria 53, 56126 Pisa, Italy; Center for Instrument Sharing University of Pisa (CISUP), Pisa, Italy
| | - Alberto Castelli
- Unit of Marine Biology and Ecology, Department of Biology, University of Pisa, via Derna 1, 56126 Pisa, Italy
| | - Ferruccio Maltagliati
- Unit of Marine Biology and Ecology, Department of Biology, University of Pisa, via Derna 1, 56126 Pisa, Italy
| | - Hongrui Zhao
- Laboratory of Hygiene and Environmental Virology, Department of Biology, University of Pisa, Via S. Zeno 35/39, 56127 Pisa, Italy
| | - Virginia Menicagli
- Unit of Marine Biology and Ecology, Department of Biology, University of Pisa, via Derna 1, 56126 Pisa, Italy; Center for Instrument Sharing University of Pisa (CISUP), Pisa, Italy
| | - Rossella Valente
- Laboratory of Hygiene and Environmental Virology, Department of Biology, University of Pisa, Via S. Zeno 35/39, 56127 Pisa, Italy
| | - Davide De Battisti
- Unit of Marine Biology and Ecology, Department of Biology, University of Pisa, via Derna 1, 56126 Pisa, Italy; Department of Biology, Chioggia Hydrobiological Station Umberto D'Ancona, University of Padova, Chioggia, Italy
| | - Marco Verani
- Laboratory of Hygiene and Environmental Virology, Department of Biology, University of Pisa, Via S. Zeno 35/39, 56127 Pisa, Italy
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6
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Kalkan S. Multimodal analysis of south-eastern Black Sea sediment bacterial population diversity. MARINE POLLUTION BULLETIN 2022; 183:114063. [PMID: 36057154 DOI: 10.1016/j.marpolbul.2022.114063] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/17/2022] [Revised: 07/15/2022] [Accepted: 08/18/2022] [Indexed: 06/15/2023]
Abstract
This study focused on marine sediments from the Black Sea, mainly due to bacterial diversity-induced public health / biotechnology application value. Sediment samples were gathered from 14 locations at differing depths across Turkish shores on a seasonal basis over 10 months, with bacterial identifications performed through using multimodal analytical platforms. Overall, 26 differing, predominantly Gram-positive (57.5 %) bacterial species were identified for this region, including Bacillaceae (50.0 %) and Pseudomonadaceae (15.0 %). The most dominant classes were identified as Bacilli (52.5 %) and Gammaproteobacteria (40.0 %). Ten isolates (25 %) to the species level and thirty-six isolates (90 %) to the genus level were identified using VITEK® MS and Bruker Microflex® LT/SH, in comparison to 16S rRNA sequencing results. Identified species - particularly, novel reported species - can contribute to the knowledge of microbial life dwelling upon sediments of the south-eastern regions of the Black Sea.
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Affiliation(s)
- Samet Kalkan
- Recep Tayyip Erdogan University, Faculty of Fisheries, Ataturk Street Fener District, 53100 Merkez, Rize, Turkey.
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De Giglio O, Narracci M, Apollonio F, Triggiano F, Acquaviva MI, Caroppo C, Diella G, Di Leo A, Fasano F, Giandomenico S, Spada L, Cavallo RA, Montagna MT. Microbiological and chemical characteristics of beaches along the Taranto Gulf (Ionian Sea, Southern Italy). ENVIRONMENTAL MONITORING AND ASSESSMENT 2022; 194:448. [PMID: 35604473 PMCID: PMC9165249 DOI: 10.1007/s10661-022-10103-x] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/13/2022] [Accepted: 05/15/2022] [Indexed: 06/14/2023]
Abstract
Coastal habitats provide important ecosystem services, such as the maintenance of ecological sustainability, water quality regulation, nutrient recycling, and sandy beaches which are important areas for recreation and tourism. The quality of seawater is generally measured by determining the concentrations of Escherichia coli and intestinal Enterococci, which might be affected by the persistent populations of these bacteria in sand. Sand might thus be a significant source of pathogen exposure to beachgoers. The quality of coastal recreational waters can also be affected by eutrophication, water discoloration, and harmful algal blooms, which pose additional human health risks. Here, we conducted a monitoring of the beaches quality along the Taranto Gulf by determining the concentrations of fecal indicator organisms, as well as other parameters that are not traditionally measured (physicochemical parameters, Pseudomonas aeruginosa, and harmful microalgae), in shallow seawater and sand sampled from three beaches. The concentrations of bacteria were determined using both standard microbiological methods and the IDEXX system. Our results demonstrate the utility of measuring a greater number of parameters in addition to those conventionally measured, as well as the importance of assessing the health risks posed by the sand matrix. Additional work is needed to develop rapid analytical techniques that could be used to monitor the microbiological parameters of solid matrices.
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Affiliation(s)
- Osvalda De Giglio
- Department of Biomedical Science and Human Oncology, University of Bari Aldo Moro, Piazza G. Cesare 11, 70124 Bari, Italy
| | - Marcella Narracci
- National Research Council (CNR), Water Research Institute (IRSA), S.S. of Taranto, via Roma 3, 74123 Taranto, Italy
| | - Francesca Apollonio
- Department of Biomedical Science and Human Oncology, University of Bari Aldo Moro, Piazza G. Cesare 11, 70124 Bari, Italy
| | - Francesco Triggiano
- Department of Biomedical Science and Human Oncology, University of Bari Aldo Moro, Piazza G. Cesare 11, 70124 Bari, Italy
| | - Maria Immacolata Acquaviva
- National Research Council (CNR), Water Research Institute (IRSA), S.S. of Taranto, via Roma 3, 74123 Taranto, Italy
| | - Carmela Caroppo
- National Research Council (CNR), Water Research Institute (IRSA), S.S. of Taranto, via Roma 3, 74123 Taranto, Italy
| | - Giusy Diella
- Department of Biomedical Science and Human Oncology, University of Bari Aldo Moro, Piazza G. Cesare 11, 70124 Bari, Italy
| | - Antonella Di Leo
- National Research Council (CNR), Water Research Institute (IRSA), S.S. of Taranto, via Roma 3, 74123 Taranto, Italy
| | - Fabrizio Fasano
- Department of Biomedical Science and Human Oncology, University of Bari Aldo Moro, Piazza G. Cesare 11, 70124 Bari, Italy
| | - Santina Giandomenico
- National Research Council (CNR), Water Research Institute (IRSA), S.S. of Taranto, via Roma 3, 74123 Taranto, Italy
| | - Lucia Spada
- National Research Council (CNR), Water Research Institute (IRSA), S.S. of Taranto, via Roma 3, 74123 Taranto, Italy
| | - Rosa Anna Cavallo
- National Research Council (CNR), Water Research Institute (IRSA), S.S. of Taranto, via Roma 3, 74123 Taranto, Italy
| | - Maria Teresa Montagna
- Department of Biomedical Science and Human Oncology, University of Bari Aldo Moro, Piazza G. Cesare 11, 70124 Bari, Italy
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Guo Y, Sivakumar M, Jiang G. Decay of four enteric pathogens and implications to wastewater-based epidemiology: Effects of temperature and wastewater dilutions. THE SCIENCE OF THE TOTAL ENVIRONMENT 2022; 819:152000. [PMID: 34843787 DOI: 10.1016/j.scitotenv.2021.152000] [Citation(s) in RCA: 9] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/19/2021] [Revised: 11/22/2021] [Accepted: 11/23/2021] [Indexed: 06/13/2023]
Abstract
Measurement of pathogens in raw wastewater from a population within certain sewer catchments can provide quantitative information on public health status within the sampled urban area. This so-called wastewater-based epidemiology (WBE) approach has the potential of becoming a powerful tool to monitor pathogen circulation and support timely intervention during outbreaks. However, many WBE studies failed to account for the pathogen decay during wastewater transportation in back calculating the disease prevalence. Various sewer process factors, including water temperature and infiltration/inflow, can lead to the variation of pathogen decay rates. This paper firstly reviewed the effects of temperature and types of water, i.e., wastewater, freshwater, and saline water, on the decay of four selected enteric pathogens, i.e., Campylobacter, Salmonella, Norovirus, and Adenovirus. To elucidate the importance of the pathogen decay rates (measured by culture and molecular methods) to WBE, a sensitivity analysis was conducted on the back-calculation equation for infection prevalence with decay rates collected from published literature. It was found that WBE back-calculation is more sensitive to decay rates under the condition of high wastewater temperature (i.e., over 25 °C) or if wastewater is diluted by saline water (i.e., sewer infiltration or use of seawater as an alternative source of freshwater constituting around 1/3 household water demand in some cities). Stormwater dilution of domestic wastewater (i.e., sewer inflow might achieve 10 times volumetric dilution) was shown to play a role in increasing the sensitivity of WBE back-calculation to bacterial pathogens, but not viral pathogens. Hence, WBE back-calculation in real sewers should account for in-sewer decay of specific pathogen species under different wastewater temperatures and dilutions. Overall, this review contributes to a better understanding of pathogen decay in wastewater which can lead to improved accuracy of WBE back-calculation.
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Affiliation(s)
- Ying Guo
- School of Civil, Mining and Environmental Engineering, University of Wollongong, Wollongong, Australia
| | - Muttucumaru Sivakumar
- School of Civil, Mining and Environmental Engineering, University of Wollongong, Wollongong, Australia
| | - Guangming Jiang
- School of Civil, Mining and Environmental Engineering, University of Wollongong, Wollongong, Australia; Illawarra Health and Medical Research Institute (IHMRI), University of Wollongong, Wollongong, Australia.
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9
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Brandão J, Weiskerger C, Valério E, Pitkänen T, Meriläinen P, Avolio L, Heaney CD, Sadowsky MJ. Climate Change Impacts on Microbiota in Beach Sand and Water: Looking Ahead. INTERNATIONAL JOURNAL OF ENVIRONMENTAL RESEARCH AND PUBLIC HEALTH 2022; 19:1444. [PMID: 35162479 PMCID: PMC8834802 DOI: 10.3390/ijerph19031444] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 11/18/2021] [Revised: 01/18/2022] [Accepted: 01/24/2022] [Indexed: 12/05/2022]
Abstract
Beach sand and water have both shown relevance for human health and their microbiology have been the subjects of study for decades. Recently, the World Health Organization recommended that recreational beach sands be added to the matrices monitored for enterococci and Fungi. Global climate change is affecting beach microbial contamination, via changes to conditions like water temperature, sea level, precipitation, and waves. In addition, the world is changing, and humans travel and relocate, often carrying endemic allochthonous microbiota. Coastal areas are amongst the most frequent relocation choices, especially in regions where desertification is taking place. A warmer future will likely require looking beyond the use of traditional water quality indicators to protect human health, in order to guarantee that waterways are safe to use for bathing and recreation. Finally, since sand is a complex matrix, an alternative set of microbial standards is necessary to guarantee that the health of beach users is protected from both sand and water contaminants. We need to plan for the future safer use of beaches by adapting regulations to a climate-changing world.
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Affiliation(s)
- João Brandão
- Department of Environmental Health, National Institute of Health Doutor Ricardo Jorge, 1649-016 Lisboa, Portugal;
- Centre for Environmental and Marine Studies (CESAM), Department of Animal Biology, Faculty of Sciences, University of Lisboa, 1749-016 Lisboa, Portugal
| | - Chelsea Weiskerger
- Department of Civil and Environmental Engineering, Michigan State University, East Lansing, MI 48824, USA;
| | - Elisabete Valério
- Department of Environmental Health, National Institute of Health Doutor Ricardo Jorge, 1649-016 Lisboa, Portugal;
- Centre for Environmental and Marine Studies (CESAM), Department of Animal Biology, Faculty of Sciences, University of Lisboa, 1749-016 Lisboa, Portugal
| | - Tarja Pitkänen
- Department of Health Security, The Finnish Institute for Health and Welfare, 70210 Kuopio, Finland; (T.P.); (P.M.)
- Department of Food Hygiene and Environmental Health, Faculty of Veterinary Medicine, University of Helsinki, 00100 Helsinki, Finland
| | - Päivi Meriläinen
- Department of Health Security, The Finnish Institute for Health and Welfare, 70210 Kuopio, Finland; (T.P.); (P.M.)
| | - Lindsay Avolio
- Department of Environmental Health and Engineering, Johns Hopkins University, Baltimore, MD 21205, USA; (L.A.); (C.D.H.)
| | - Christopher D. Heaney
- Department of Environmental Health and Engineering, Johns Hopkins University, Baltimore, MD 21205, USA; (L.A.); (C.D.H.)
| | - Michael J. Sadowsky
- BioTechnology Institute, University of Minnesota, St. Paul, MN 55108, USA;
- Department of Soil, Water & Climate, University of Minnesota, St. Paul, MN 55108, USA
- Department of Plant and Microbial Biology, University of Minnesota, St. Paul, MN 55108, USA
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10
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Gallard-Gongora J, Lobos A, Conrad JW, Peraud J, Harwood VJ. An assessment of three methods for extracting bacterial DNA from beach sand. J Appl Microbiol 2021; 132:2990-3000. [PMID: 34932856 DOI: 10.1111/jam.15423] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/10/2021] [Revised: 12/16/2021] [Accepted: 12/17/2021] [Indexed: 11/28/2022]
Abstract
AIMS Beach water quality is regulated by faecal indicator bacteria levels, sand is not, despite known human health risk from exposure to beach sand. We compared the performance of three methods to extract bacterial DNA from beach sand as a step toward a standard method. METHODS AND RESULTS The analytical sensitivity of quantitative polymerase chain reaction (qPCR) for Enterococcus was compared for the slurry (suspension, agitation, membrane filtration of supernatant), versus direct extraction using PowerSoil™ or PowerMax Soil™ kits. The slurry method had the lowest limit of detection at 20-80 gene copies g-1 , recovered significantly more DNA, and the only method that detected Enterococcus by qPCR in all samples; therefore, the only method used in subsequent experiments. The slurry method reflected the spatial variability of Enterococcus in individual transect samples. Mean recovery efficiency of the microbial source tracking marker HF183 from wastewater spiked marine and freshwater beach sand was 100.8% and 64.1%, respectively, but varied, indicating that the mixing protocol needs improvement. CONCLUSIONS Among the three methods, the slurry method had the best analytical sensitivity and produced extracts that were useful for culture or molecular analysis. SIGNIFICANCE AND IMPACT OF STUDY Standardization of methods for extraction of bacterial DNA from sand facilitates comparisons among studies, and ultimately contributes to the safety of recreational beaches.
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Affiliation(s)
| | - Aldo Lobos
- Department of Integrative Biology, University of South Florida, Tampa, Florida, USA
| | - James W Conrad
- Department of Integrative Biology, University of South Florida, Tampa, Florida, USA
| | - Jayme Peraud
- Department of Integrative Biology, University of South Florida, Tampa, Florida, USA
| | - Valerie J Harwood
- Department of Integrative Biology, University of South Florida, Tampa, Florida, USA
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11
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Salmonella enterica Serovar Diversity, Distribution, and Prevalence in Public Access Waters from a Central California Coastal Leafy Green Growing Region during 2011 - 2016. Appl Environ Microbiol 2021; 88:e0183421. [PMID: 34910555 DOI: 10.1128/aem.01834-21] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022] Open
Abstract
Prevalence and serovar diversity of Salmonella enterica was measured during a five-year survey of surface waters in a 500 mi^2 agricultural region of the Central California Coast. Rivers, streams, lakes, and ponds were sampled bimonthly resulting in 2,979 samples. Overall prevalence was 56.4% with higher levels detected in Spring than in Fall. Small, but significant, differences in prevalence were detected based on sample locations. Detection of Salmonella was correlated positively with both significant rain events and, in some environments, levels of generic Escherichia coli. Analysis of 1,936 isolates revealed significant serovar diversity, with 91 different serovars detected. The most common isolated serovars were S. enterica subsp. enterica serovars I 6,8:d:- (406 isolates, 21.0%, and potentially monophasic Salmonella Muenchen), Give (334 isolates, 17.3%), Muenchen (158 isolates, 8.2%), Typhimurium (227 isolates, 11.7%), Oranienburg (106 isolates, 5.5%), and Montevideo (78 isolates, 4%). Sixteen of the 24 most common serovars detected in the region are among the serovars reported to cause the most human salmonellosis in the United States. Some of the serovars were associated with location and seasonal bias. Analysis of XbaI Pulsed Field Gel Electrophoresis (PFGE) patterns of strains of serovars Typhimurium, Oranienburg, and Montevideo showed significant intra-serovar diversity. PFGE pulsotypes were identified in the region for multiple years of the survey, indicating persistence or regular re-introduction to the region. Importance Non-typhoidal Salmonella is the among the leading causes of bacterial foodborne illness and increasing numbers of outbreaks and recalls are due to contaminated produce. High prevalence and 91 different serovars were detected in this leafy green growing region. Seventeen serovars that cause most of the human salmonellosis in the United States were detected, with 16 of those serovars detected in multiple locations and multiple years of the 5-year survey. Understanding the widespread prevalence and diversity of Salmonella in the region will assist in promoting food safety practices and intervention methods for growers and regulators.
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12
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Shagieva E, Demnerova K, Michova H. Waterborne Isolates of Campylobacter jejuni Are Able to Develop Aerotolerance, Survive Exposure to Low Temperature, and Interact With Acanthamoeba polyphaga. Front Microbiol 2021; 12:730858. [PMID: 34777280 PMCID: PMC8578730 DOI: 10.3389/fmicb.2021.730858] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/25/2021] [Accepted: 09/28/2021] [Indexed: 12/20/2022] Open
Abstract
Campylobacter jejuni is regarded as the leading cause of bacterial gastroenteritis around the world. Even though it is generally considered to be a sensitive microaerobic pathogen, it is able to survive in the environment outside of the intestinal tract of the host. This study aimed to assess the impact of selected environmental parameters on the survival of 14 C. jejuni isolates of different origins, including 12 water isolates. The isolates were tested for their antibiotic resistance, their ability to survive at low temperature (7°C), develop aerotolerance, and to interact with the potential protozoan host Acanthamoeba polyphaga. The antibiotic susceptibility was determined by standard disk diffusion according to EUCAST. Out of the 14 isolates, 8 were resistant to ciprofloxacin (CIP) and 5 to tetracycline (TET), while only one isolate was resistant to erythromycin (ERY). Five isolates were resistant to two different antibiotic classes. Tetracycline resistance was only observed in isolates isolated from wastewater and a clinical sample. Further, the isolates were tested for their survival at 7°C under both aerobic and microaerobic conditions using standard culture methods. The results showed that under microaerobic conditions, all isolates maintained their cultivability for 4 weeks without a significant decrease in the numbers of bacteria and variation between the isolates. However, significant differences were observed under aerobic conditions (AC). The incubation led to a decrease in the number of cultivable cells, with complete loss of cultivability after 2 weeks (one water isolate), 3 weeks (7 isolates), or 4 weeks of incubation (6 isolates). Further, all isolates were studied for their ability to develop aerotolerance by repetitive subcultivation under microaerobic and subsequently AC. Surprisingly, all isolates were able to adapt and grow under AC. As the last step, 5 isolates were selected to evaluate a potential protective effect provided by A. polyphaga. The cocultivation of isolates with the amoeba resulted in the survival of about 40% of cells treated with an otherwise lethal dose of gentamicin. In summary, C. jejuni is able to adapt and survive in a potentially detrimental environment for a prolonged period of time, which emphasizes the role of the environmental transmission route in the spread of campylobacteriosis.
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Affiliation(s)
- Ekaterina Shagieva
- Laboratory of Food Microbiology, Department of Biochemistry and Microbiology, University of Chemistry and Technology, Prague, Czechia
| | - Katerina Demnerova
- Laboratory of Food Microbiology, Department of Biochemistry and Microbiology, University of Chemistry and Technology, Prague, Czechia
| | - Hana Michova
- Laboratory of Food Microbiology, Department of Biochemistry and Microbiology, University of Chemistry and Technology, Prague, Czechia
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Toubiana M, Salles C, Tournoud MG, Licznar-Fajardo P, Zorgniotti I, Trémélo ML, Jumas-Bilak E, Robert S, Monfort P. Monitoring Urban Beach Quality on a Summer Day: Determination of the Origin of Fecal Indicator Bacteria and Antimicrobial Resistance at Prophète Beach, Marseille (France). Front Microbiol 2021; 12:710346. [PMID: 34512587 PMCID: PMC8424182 DOI: 10.3389/fmicb.2021.710346] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/16/2021] [Accepted: 07/26/2021] [Indexed: 11/27/2022] Open
Abstract
A highly frequented beach in Marseille, France, was monitored on an hourly basis during a summer day in July 2018, to determine possible water and sand fecal pollution, in parallel with influx of beach users from 8 a.m. to 8 p.m. Fecal indicator bacteria were enumerated, together with four host-associated fecal molecular markers selected to discriminate human, dog, horse, or gull/seagull origins of the contamination. The antimicrobial resistance of bacteria in water and sand was evaluated by quantifying (i) the class 1, 2, and 3 integron integrase genes intI, and (ii) blaTEM, blaCTX–M, and blaSHV genes encoding endemic beta-lactamase enzymes. The number of beach users entering and leaving per hour during the observation period was manually counted. Photographs of the beach and the bathing area were taken every hour and used to count the number of persons in the water and on the sand, using a photo-interpretation method. The number of beach users increased from early morning to a peak by mid-afternoon, totaling more than 1,800, a very large number of users for such a small beach (less than 1 ha). An increase in fecal contamination in the water corresponded to the increase in beach attendance and number of bathers, with maximum numbers observed in the mid-afternoon. The human-specific fecal molecular marker HF183 indicated the contamination was of human origin. In the water, the load of Intl2 and 3 genes was lower than Intl1 but these genes were detected only during peak attendance and highest fecal contamination. The dynamics of the genes encoding B-lactamases involved in B-lactams resistance notably was linked to beach attendance and human fecal contamination. Fecal indicator bacteria, integron integrase genes intI, and genes encoding B-lactamases were detected in the sand. This study shows that bathers and beach users can be significant contributors to contamination of seawater and beach sand with bacteria of fecal origin and with bacteria carrying integron-integrase genes and beta lactamase encoding genes. High influx of users to beaches is a significant factor to be considered in order to reduce contamination and manage public health risk.
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Affiliation(s)
- Mylène Toubiana
- HydroSciences Montpellier, UMR 5151 Université de Montpellier, CNRS, IRD, Montpellier, France
| | - Christian Salles
- HydroSciences Montpellier, UMR 5151 Université de Montpellier, CNRS, IRD, Montpellier, France
| | - Marie-George Tournoud
- HydroSciences Montpellier, UMR 5151 Université de Montpellier, CNRS, IRD, Montpellier, France
| | - Patricia Licznar-Fajardo
- HydroSciences Montpellier, UMR 5151 Université de Montpellier, CNRS, IRD, Montpellier, France.,Département d'Hygiène Hospitalière, CHU Montpellier, Montpellier, France
| | - Isabelle Zorgniotti
- HydroSciences Montpellier, UMR 5151 Université de Montpellier, CNRS, IRD, Montpellier, France
| | - Marie-Laure Trémélo
- ESPACE, UMR 7300 Aix Marseille Université, Avignon Université, Université Côte d'Azur, CNRS, Aix-en-Provence, France
| | - Estelle Jumas-Bilak
- HydroSciences Montpellier, UMR 5151 Université de Montpellier, CNRS, IRD, Montpellier, France.,Département d'Hygiène Hospitalière, CHU Montpellier, Montpellier, France
| | - Samuel Robert
- ESPACE, UMR 7300 Aix Marseille Université, Avignon Université, Université Côte d'Azur, CNRS, Aix-en-Provence, France
| | - Patrick Monfort
- HydroSciences Montpellier, UMR 5151 Université de Montpellier, CNRS, IRD, Montpellier, France
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Preliminary Microbiological Coastal Water Quality Determination along the Department of Atlántico (Colombia): Relationships with Beach Characteristics. JOURNAL OF MARINE SCIENCE AND ENGINEERING 2021. [DOI: 10.3390/jmse9020122] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/05/2023]
Abstract
Beach water quality is an important factor concerning public health and tourism linked to the “Sun, Sea and Sand” market and is usually assessed in international regulations by the quantification of Escherichia coli and enterococci counts. Despite Salmonella spp. detection not being included in international normative, the presence/absence of this bacteria is also an indicator of seawater quality. The objective of this study was to determine microbiological quality of beach water at 14 beaches along the Department of Atlántico (Colombia) and its relationship with beach characteristics as beach typology (i.e., urban, village, rural and remote areas), presence of beach facilities (e.g., bars, restaurants, etc.) and streams outflowing into the coastline. Sampling program aimed to analyse E. coli and Salmonella spp., by culture-based and real time PCR methods, respectively. Microbiological outcomes were compared with beach characteristics, and a cluster analysis was performed. E. coli and Salmonella spp. were detected in 70% and 20% of samples, respectively. Highest E. coli counts were observed at beaches classified as urban and at Sabanilla, a rural beach with presence of numerous beach restaurants/bars. Salmonella spp. presence was associated with streams that lack wastewater treatment systems. Cluster analysis clearly evidenced the relationship between E. coli and Salmonella spp. and beach characteristics, allowing to obtain indications to implement management programs. According to data obtained, monitoring programs have to be especially carried out in urban areas and at places with beach facilities. This could enhance microbiological water quality and consequently, beachgoers safety and touristic beach attractiveness to international visitors.
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Jaradat ZW, Ababneh QO, Sha’aban ST, Alkofahi AA, Assaleh D, Al Shara A. Methicillin Resistant Staphylococcus aureus and public fomites: a review. Pathog Glob Health 2020; 114:426-450. [PMID: 33115375 PMCID: PMC7759291 DOI: 10.1080/20477724.2020.1824112] [Citation(s) in RCA: 20] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/06/2023] Open
Abstract
Staphylococcus genus is a Gram-positive coccus normally associated with skin and mucous membranes of warm-blooded animals. It is part of the commensal human microflora, or found in animals, or contaminating surfaces in the community and hospital settings. Staphylococcus aureus is the most pathogenic species belonging to this genus, as it possesses a collection of virulence factors that are expressed solely to evade the immune system. The increase in the misuse of antimicrobial agents predisposed S. aureus to develop antibiotic resistance, including the resistance to methicillin which led to the emergence of Methicillin-Resistant S. aureus (MRSA). MRSA is considered one of the most dangerous nosocomial pathogens causing many hard to treat infections in hospitals and was named as Hospital Associated MRSA (HA-MRSA). Over the past 20-25 years, MRSA was isolated from community settings and thus Community Associated MRSA (CA-MRSA) has emerged. Inside hospitals, MRSA has been isolated from fomites in contact with patients, as well as staff's protective and personal items. This review highlights the worldwide prevalence of MRSA on fomites within the contexts of hospital and community settings.
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Affiliation(s)
- Ziad W Jaradat
- Jordan University of Science and Technology, Irbid, 22110, Jordan
| | | | - Sherin T Sha’aban
- Department of Applied Biological Sciences, Jordan University of Science and Technology, Irbid, 22110, Jordan
| | - Ayesha A Alkofahi
- Department of Applied Biological Sciences, Jordan University of Science and Technology, Irbid, 22110, Jordan
| | - Duaa Assaleh
- Department of Applied Biological Sciences, Jordan University of Science and Technology, Irbid, 22110, Jordan
| | - Anan Al Shara
- Department of Applied Biological Sciences, Jordan University of Science and Technology, Irbid, 22110, Jordan
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16
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Hoh DZ, Lin YF, Liu WA, Sidique SNM, Tsai IJ. Nest microbiota and pathogen abundance in sea turtle hatcheries. FUNGAL ECOL 2020. [DOI: 10.1016/j.funeco.2020.100964] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/03/2023]
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Shrestha A, Kelty CA, Sivaganesan M, Shanks OC, Dorevitch S. Fecal pollution source characterization at non-point source impacted beaches under dry and wet weather conditions. WATER RESEARCH 2020; 182:116014. [PMID: 32622131 PMCID: PMC8220998 DOI: 10.1016/j.watres.2020.116014] [Citation(s) in RCA: 20] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/20/2020] [Revised: 06/01/2020] [Accepted: 06/02/2020] [Indexed: 05/09/2023]
Abstract
Though Lake Michigan beaches in Chicago are not impacted by stormwater or wastewater outfalls, several of those beaches often exceed USEPA Beach Action Values (BAVs). We investigated the role of microbial source tracking (MST) as a complement to routine beach monitoring at Chicago beaches. In summer 2016, water samples from nine Chicago beaches were analyzed for E. coli by culture and enterococci by qPCR. A total of 195 archived samples were then tested for human (HF183/BacR287, HumM2), canine (DG3, DG37), and avian (GFD) microbial source tracking (MST) markers. Associations between MST and general fecal indicator bacteria (FIB) measures were evaluated and stratified based on wet and dry weather definitions. Among the 195 samples, HF183/BacR287 was quantifiable in 4%, HumM2 in 1%, DG3 in 6%, DG37 in 2%, and GFD in 23%. The one beach with a dog area was far more likely to have DG3 present in the quantifiable range than other beaches. Exceedance of general FIB BAVs increased the odds of human, dog and avian marker detection. MST marker weighted-average fecal scores for DG3 was 2.4 times, DG37 was 2.1 times, and GFD was 1.6 times higher during wet compared to dry weather conditions. HF183/BacR287 weighted-average fecal scores were not associated with precipitation. Associations between FIB BAV exceedance and MST marker detection were generally stronger in wet weather. Incorporating MST testing into routine beach water monitoring can provide information that beach managers can use when developing protection plans for beaches not impacted by point sources.
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Affiliation(s)
- Abhilasha Shrestha
- Division of Environmental and Occupational Health Sciences, School of Public Health, University of Illinois at Chicago, Chicago, IL, USA.
| | - Catherine A Kelty
- U.S. Environmental Protection Agency, Office of Research and Development, Cincinnati, OH, USA
| | - Mano Sivaganesan
- U.S. Environmental Protection Agency, Office of Research and Development, Cincinnati, OH, USA
| | - Orin C Shanks
- U.S. Environmental Protection Agency, Office of Research and Development, Cincinnati, OH, USA
| | - Samuel Dorevitch
- Division of Environmental and Occupational Health Sciences, School of Public Health, University of Illinois at Chicago, Chicago, IL, USA; Institute for Environmental Science and Policy, University of Illinois at Chicago, Chicago, IL, USA
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18
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Li D, Van De Werfhorst LC, Dunne T, Devarajan N, Ayala TG, Holden PA. Surf zone microbiological water quality following emergency beach nourishment using sediments from a catastrophic debris flow. WATER RESEARCH 2020; 176:115733. [PMID: 32234606 DOI: 10.1016/j.watres.2020.115733] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/19/2019] [Revised: 03/09/2020] [Accepted: 03/16/2020] [Indexed: 06/11/2023]
Abstract
Urban disaster response requires disposal of complex wastes. This study regards a case wherein high intensity rainfall fell over a remote mountainous area previously burned by wildfire, generating debris flows that devastated a downstream town. Sanitary sewers and homes with septic systems were damaged, releasing human waste into the debris flow field. Contaminated sediments, with their high fecal indicator bacteria (FIB) concentrations, were cleared from public rights-of-way and creek channels by local authorities, then disposed onto distant Goleta Beach for beach nourishment, causing immediate surf zone microbiological water quality exceedances. To determine potential public health threats, disposed sediments and surf zone waters were sampled and analyzed-relative to reference samples of mountain soil and raw sewage-for FIB, pathogens, human (HF183) and other host- (Gull2 TaqMan, and DogBact) associated DNA-based fecal markers, and bacterial community 16S rRNA gene sequences. Approximately 20% of disposed sediment samples contained the HF183 marker; sequencing suggested that all samples were contaminated by sewage. In an initial sediment disposal period, surf zone waters harbored intestinal bacterial sequences that were shared with disposed sediments and sewage. Yet surf zone bacterial communities returned to mostly marine clades within weeks. Taken together, multiple conventional and DNA-based analyses informed this forensic assessment of human waste contamination. In the future, similar analyses could be used earlier in disaster response to guide sediment disposal decisions towards continuously protecting beachgoer health.
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Affiliation(s)
- Dong Li
- Bren School of Environmental Science & Management, and the Earth Research Institute, University of California, Santa Barbara, Santa Barbara, CA, 93106, USA
| | - Laurie C Van De Werfhorst
- Bren School of Environmental Science & Management, and the Earth Research Institute, University of California, Santa Barbara, Santa Barbara, CA, 93106, USA
| | - Thomas Dunne
- Bren School of Environmental Science & Management, and the Earth Research Institute, University of California, Santa Barbara, Santa Barbara, CA, 93106, USA
| | - Naresh Devarajan
- Bren School of Environmental Science & Management, and the Earth Research Institute, University of California, Santa Barbara, Santa Barbara, CA, 93106, USA
| | - Tania Gomez Ayala
- Bren School of Environmental Science & Management, and the Earth Research Institute, University of California, Santa Barbara, Santa Barbara, CA, 93106, USA
| | - Patricia A Holden
- Bren School of Environmental Science & Management, and the Earth Research Institute, University of California, Santa Barbara, Santa Barbara, CA, 93106, USA.
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19
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Trigo CE, Patel F. Febrile illness after a beach day: a case of salmonella bacteremia from oral exposure to a sand dollar. JOURNAL OF WATER AND HEALTH 2020; 18:239-243. [PMID: 32300096 DOI: 10.2166/wh.2020.201] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/11/2023]
Abstract
This case report discusses a rare presentation of salmonella bacteremia after an oral exposure to a sand dollar in a pediatric patient. A 2-year-old Hispanic male presented to the emergency department with a chief complaint of diarrhea and fever for 8 days after a family trip to Destin beach, Florida, during the sea turtle nesting season. The symptoms began a day after the patient took a bite on a sand dollar found on the beach that caused a small wound inside his cheek. The laboratory testing done in the emergency department was remarkable for blood and stool culture testing positive for non-typhoid salmonella. The sand dollar is a type of a sea urchin commonly found on sandy beaches and consists of an anatomical filtration system to consume sandy water. It could be inferred that the increased presence of sea turtles during the time of the patient's visit to Destin beach could have led to higher levels of salmonella in the seawater and consequently in the sand dollar, possibly leading to the inoculation of salmonella in this patient. To the best of our knowledge, this is a first case report that links oral exposure of the sand dollar to invasive salmonellosis.
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Affiliation(s)
- Carlos E Trigo
- Emergency Medicine Resident PGY2 at UT Southwestern, 3355 Blackburn St. Apt 8306, Dallas, TX 75204, USA E-mail:
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20
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Taylor HB, Kurtz HD. Microbial community structure shows differing levels of temporal stability in intertidal beach sands of the grand strand region of South Carolina. PLoS One 2020; 15:e0229387. [PMID: 32106250 PMCID: PMC7046189 DOI: 10.1371/journal.pone.0229387] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/28/2019] [Accepted: 02/05/2020] [Indexed: 11/18/2022] Open
Abstract
Studies of microbial community structure in intertidal and supratidal beach sands along the California and Gulf of Mexico coasts have begun to reveal geographical patterns in microbial diversity through the use of next generation sequencing technology. Only a few studies have targeted communities along the Eastern seaboard, leaving a variety of microbial ecosystems uncharacterized. In this study, we examine the microbial community structure within three South Carolina beaches along the Grand Strand via sequencing of the V4 region of the 16S rRNA gene to discern relationships between diversity and temporal or regional factors. Gammaproteobacteria, Planctomycetes, Acidobacteria, and Actinobacteria dominated the composition of these beaches. Diversity analyses revealed that highly diverse communities were similar in overall composition and diversity but showed different levels of community structure stability over time. The community structure in Pawleys Island sands showed no significant change over time, while Garden City experienced significant shifts between each sampling date. Community structure also differed between beaches and, to a lesser degree, sampling date. These data provide evidence of the high microbial diversity within these beach sands and suggest that even though beaches of the same geographic region can show similarity in composition and diversity at a particular timepoint, the nature of their community structure and underlying diversity may differ comparatively and over time.
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Affiliation(s)
- Harrison B. Taylor
- Department of Biological Sciences, Clemson University, Clemson, SC, United States of America
| | - Harry D. Kurtz
- Department of Biological Sciences, Clemson University, Clemson, SC, United States of America
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Kuhn KG, Nygård KM, Löfdahl M, Trönnberg L, Rimhanen-Finne R, Sunde LS, Guzman-Herrador B, Ethelberg S. Campylobacteriosis in the Nordic countries from 2000 to 2015: Trends in time and space. Scand J Public Health 2019; 48:862-869. [PMID: 31763953 DOI: 10.1177/1403494819875020] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
Abstract
Aims: This study aimed to describe the demographic and geographic patterns of campylobacteriosis in Denmark, Finland, Norway and Sweden during 2000-2015. Methods: All Campylobacter infections notified to national authorities in the four countries during the study period were included. Background data for each notification consisted of patient age, sex, geographical location, presumed origin of infection and date of sample taken or date of sample received in the laboratory. These data were analysed in order to investigate annual trends, age group and sex patterns, as well as variations in the geographical and seasonal distribution of infections. Results: During the study period, a total of 164,001 Campylobacter infections, excluding travel-related cases, were registered, representing a mean annual incidence of 42.3 cases/100,000 population (ranging from 28.5 in Norway to 60.4 in Denmark). The incidence increased significantly from 2004 onwards in all countries, apart from Denmark. Males had higher infection rates in general. The highest incidences were observed in 0-4 year olds and those aged 20-29 years, apart from in Finland where there was no peak of infections in children aged 0-4 years. Seasonality of disease was distinct in all four countries, showing peaks of infection between July and August. In Sweden and Norway, incidences of campylobacteriosis were significantly higher in municipalities with high degrees of coastline or inland water. Conclusions: Campylobacter in the Nordic countries mostly follows known patterns with respect to demography and seasonality. Our study demonstrates new insights concerning geographical patterns of disease, highlighting possible future vulnerable population groups and locations.
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Affiliation(s)
- Katrin G Kuhn
- Infectious Disease Epidemiology and Prevention, Statens Serum Institut, Denmark
| | - Karin M Nygård
- Department of Infectious Disease Epidemiology, Norwegian Institute of Public Health, Norway
| | - Margareta Löfdahl
- Department of Monitoring and Evaluation, Public Health Agency of Sweden, Sweden
| | - Linda Trönnberg
- Department of Monitoring and Evaluation, Public Health Agency of Sweden, Sweden
| | - Ruska Rimhanen-Finne
- Department of Health Security, National Institute for Health and Welfare, Finland
| | - Linda S Sunde
- Department of Infectious Disease Epidemiology, Norwegian Institute of Public Health, Norway
| | | | - Steen Ethelberg
- Infectious Disease Epidemiology and Prevention, Statens Serum Institut, Denmark
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Abstract
Fecal microorganisms can enter water bodies in diverse ways, including runoff, sewage discharge, and direct fecal deposition. Once in water, the microorganisms experience conditions that are very different from intestinal habitats. The transition from host to aquatic environment may lead to rapid inactivation, some degree of persistence, or growth. Microorganisms may remain planktonic, be deposited in sediment, wash up on beaches, or attach to aquatic vegetation. Each of these habitats offers a panoply of different stressors or advantages, including UV light exposure, temperature fluctuations, salinity, nutrient availability, and biotic interactions with the indigenous microbiota (e.g., predation and/or competition). The host sources of fecal microorganisms are likewise numerous, including wildlife, pets, livestock, and humans. Most of these microorganisms are unlikely to affect human health, but certain taxa can cause waterborne disease. Others signal increased probability of pathogen presence, e.g., the fecal indicator bacteria Escherichia coli and enterococci and bacteriophages, or act as fecal source identifiers (microbial source tracking markers). The effects of environmental factors on decay are frequently inconsistent across microbial species, fecal sources, and measurement strategies (e.g., culture versus molecular). Therefore, broad generalizations about the fate of fecal microorganisms in aquatic environments are problematic, compromising efforts to predict microbial decay and health risk from contamination events. This review summarizes the recent literature on decay of fecal microorganisms in aquatic environments, recognizes defensible generalizations, and identifies knowledge gaps that may provide particularly fruitful avenues for obtaining a better understanding of the fates of these organisms in aquatic environments.
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Motlagh AM, Yang Z. Detection and occurrence of indicator organisms and pathogens. WATER ENVIRONMENT RESEARCH : A RESEARCH PUBLICATION OF THE WATER ENVIRONMENT FEDERATION 2019; 91:1402-1408. [PMID: 31505073 PMCID: PMC7169830 DOI: 10.1002/wer.1238] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 05/30/2019] [Revised: 09/03/2019] [Accepted: 09/04/2019] [Indexed: 06/10/2023]
Abstract
This review paper focuses on detection and quantification techniques of indicator organisms that can be used for water quality assessment. The environmental pathogens that are critical to understand and better evaluate water quality are also discussed in this paper. Several recent studies using culture-independent methods such as microbial source tracking, pulsed field gel electrophoresis, mitochondrial DNA, and next generation sequencing to assess various environmental samples and water bodies have been reviewed. PRACTITIONER POINTS: Various waterborne pathogens and cases of outbreak occurances due to presence of pathogens are studied in this review paper. Recent studies for detecting major indicator organisms to evaluate the presence of pathogens in water bodies are reviewed. Culture-independent techniques as robust tools to detect and quantify waterborne pathogens are discussed in this review paper.
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Affiliation(s)
- Amir M. Motlagh
- Department of Civil EngineeringCalifornia State UniversitySacramentoCalifornia
| | - Zhengjian Yang
- Department of Civil EngineeringCalifornia State UniversitySacramentoCalifornia
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Massinai A, Tahir A, Abu N. High concentrations of pathogenic Salmonella spp. during the wet season on bathing beaches in Makassar City, Indonesia. ACTA ACUST UNITED AC 2019. [DOI: 10.1088/1755-1315/253/1/012044] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
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Fang H, Vergara GGR, Goh SG, Ang CYL, Gu X, Gin KYH. Effect of Rainfall on the Microbial Water Quality of a Tropical Urban Catchment. JOURNAL OF ENVIRONMENTAL QUALITY 2018; 47:1242-1248. [PMID: 30272782 DOI: 10.2134/jeq2018.03.0099] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/08/2023]
Abstract
Wet weather conditions have been associated with increased bacterial and viral counts in surface waters. Moreover, heavy rainfall and flooding were found to be the most common events preceding waterborne disease outbreaks associated with extreme weather conditions. This study aimed to examine the effect of rainfall on the quality of surface waters and to determine its suitability for primary contact recreation during wet weather conditions. A total of 228 catchment water samples were collected during wet and dry periods. Parameters that were found to increase with increasing rainfall were , enterococci, somatic coliphages, and turbidity, whereas total dissolved solids were found to decrease. Positive correlations ( < 0.05) were observed between cumulative rainfall and geometric mean concentrations of , enterococci, somatic coliphages, and turbidity ( = 0.69-0.95), whereas a negative correlation was observed between cumulative rainfall and total dissolved solids ( = -0.58). In addition, a rapid decline in water quality was observed during heavy rainfall that resulted in failure to meet recreational water quality guidelines. In view of public health and safety, primary recreational activities in the water catchment may not be advisable during or immediately after a rainfall event due to poor water quality.
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Li X, Peed L, Sivaganesan M, Kelty CA, Nietch C, Shanks OC. Evidence of Genetic Fecal Marker Interactions between Water Column and Periphyton in Artificial Streams. ACS OMEGA 2018; 3:10107-10113. [PMID: 31459140 PMCID: PMC6645356 DOI: 10.1021/acsomega.8b01785] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 07/30/2018] [Accepted: 08/16/2018] [Indexed: 06/10/2023]
Abstract
Periphyton is a complex mixture of algae, microbes, inorganic sediment, and organic matter that is attached to submerged surfaces in most flowing freshwater systems. This natural community is known to absorb pollutants from the water column, resulting in improved water quality. However, the role of periphyton in the fate and transport of genetic fecal markers suspended in the water column remains unclear. As application of genetic-based methodologies continues to increase in freshwater settings, it is important to identify any interactions that could potentially confound water quality interpretations. A 16 week indoor mesocosm study was conducted to simultaneously measure genetic fecal markers in the water column and in the associated periphyton when subject to wastewater source loading. Treated wastewater effluent was pumped directly from a treatment facility adjacent to the experimental stream facility. Inflow and outflow surface water grabs were paired with the collection of periphyton samples taken from the mesocosm substrates on a weekly basis. Samples were analyzed with three genetic fecal indicator quantitative real-time polymerase chain reaction assays targeting Escherichia coli (EC23S857), enterococci (Entero1), and Bacteroidales (GenBac3), as well as, two human host-associated fecal pollution markers (HF183 and HumM2). In addition, periphyton dry mass was measured. During wastewater effluent loading, genetic markers were detected in periphyton at frequencies up to 100% (EC23S857, Entero1, and GenBac3), 59.4% (HF183), and 21.9% (HumM2) confirming sequestration from the water column. Mean net-flux shifts in water column inflow and outflow genetic indicator concentrations further supported interactions between the periphyton and water column. In addition, positive correlations were observed between periphyton dry mass and genetic marker concentrations ranging from r = 0.693 (Entero1) to r = 0.911 (GenBac3). Overall, findings support the notion that genetic markers suspended in the water column can be trapped by periphyton, further suggesting that the benthic environment in flowing freshwater systems may be an important factor to consider for water quality management with molecular methods.
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Affiliation(s)
- Xiang Li
- Oak
Ridge Institute for Science and Education, Oak Ridge, Tennessee 37830, United States
| | - Lindsay Peed
- Office
of Research and Development, U.S. Environmental
Protection Agency, Cincinnati, Ohio 45268, United States
| | - Mano Sivaganesan
- Office
of Research and Development, U.S. Environmental
Protection Agency, Cincinnati, Ohio 45268, United States
| | - Catherine A. Kelty
- Office
of Research and Development, U.S. Environmental
Protection Agency, Cincinnati, Ohio 45268, United States
| | - Christopher Nietch
- Office
of Research and Development, U.S. Environmental
Protection Agency, Cincinnati, Ohio 45268, United States
| | - Orin C. Shanks
- Office
of Research and Development, U.S. Environmental
Protection Agency, Cincinnati, Ohio 45268, United States
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Coliphages and Gastrointestinal Illness in Recreational Waters: Pooled Analysis of Six Coastal Beach Cohorts. Epidemiology 2018; 28:644-652. [PMID: 28489717 PMCID: PMC5538927 DOI: 10.1097/ede.0000000000000681] [Citation(s) in RCA: 23] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
Abstract
BACKGROUND Coliphages have been proposed as indicators of fecal contamination in recreational waters because they better mimic the persistence of pathogenic viruses in the environment and wastewater treatment than fecal indicator bacteria. We estimated the association between coliphages and gastrointestinal illness and compared it with the association with culturable enterococci. METHODS We pooled data from six prospective cohort studies that enrolled coastal beachgoers in California, Alabama, and Rhode Island. Water samples were collected and gastrointestinal illness within 10 days of the beach visit was recorded. Samples were tested for enterococci and male-specific and somatic coliphages. We estimated cumulative incidence ratios (CIR) for the association between swimming in water with detectable coliphage and gastrointestinal illness when human fecal pollution was likely present, not likely present, and under all conditions combined. The reference group was unexposed swimmers. We defined continuous and threshold-based exposures (coliphage present/absent, enterococci >35 vs. ≤35 CFU/100 ml). RESULTS Under all conditions combined, there was no association between gastrointestinal illness and swimming in water with detectable coliphage or enterococci. When human fecal pollution was likely present, coliphage and enterococci were associated with increased gastrointestinal illness, and there was an association between male-specific coliphage level and illness that was somewhat stronger than the association between enterococci and illness. There were no substantial differences between male-specific and somatic coliphage. CONCLUSIONS Somatic coliphage and enterococci had similar associations with gastrointestinal illness; there was some evidence that male-specific coliphage had a stronger association with illness than enterococci in marine waters with human fecal contamination.
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Seck EH, Dufour JC, Raoult D, Lagier JC. Halophilic & halotolerant prokaryotes in humans. Future Microbiol 2018; 13:799-812. [PMID: 29726267 DOI: 10.2217/fmb-2017-0237] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022] Open
Abstract
Halophilic prokaryotes are described as microorganisms living in hypersaline environments. Here, we list the halotolerant and halophilic bacteria which have been isolated in humans. Of the 52 halophilic prokaryotes, 32 (61.54%) were moderately halophilic, 17 (32.69%) were slightly halophilic and three (5.76%) were extremely halophilic prokaryotes. At the phylum level, 29 (54.72%) belong to Firmicutes, 15 (28.84%) to Proteobacteria, four (7.69%) to Actinobacteria, three (5.78%) to Euryarchaeota and one (1.92%) belongs to Bacteroidetes. Halophilic prokaryotes are rarely pathogenic: of these 52 halophilic prokaryotes only two (3.92%) species were classified in Risk Group 2 (Vibrio cholerae, Vibrio parahaemolyticus) and one (1.96%), species in Risk Group 3 (Bacillus anthracis).
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Affiliation(s)
- El Hadji Seck
- Aix Marseille University, IRD, MEPHI, IHU Méditerranée Infection, 19-21 Boulevard Jean Moulin, 13005 Marseille, France
| | - Jean-Charles Dufour
- SESSTIM (UMR912), Sciences Economiques et Sociales de la Santé et Traitement de l'Information Médicale, Aix Marseille University, INSERM, IRD, Marseille, France.,Service Biostatistique et Technologies de l'Information et de la Communication (BIOSTIC), Assistance Publique Hôpitaux de Marseille, Hôpital de la Timone, Marseille, France
| | - Didier Raoult
- Aix Marseille University, IRD, MEPHI, IHU Méditerranée Infection, 19-21 Boulevard Jean Moulin, 13005 Marseille, France.,Special Infectious Agents Unit, King Fahd Medical Research Center, King Abdulaziz University, Jeddah, Saudi Arabia
| | - Jean-Christophe Lagier
- Aix Marseille University, IRD, MEPHI, IHU Méditerranée Infection, 19-21 Boulevard Jean Moulin, 13005 Marseille, France
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Gölz G, Kittler S, Malakauskas M, Alter T. Survival of Campylobacter in the Food Chain and the Environment. CURRENT CLINICAL MICROBIOLOGY REPORTS 2018. [DOI: 10.1007/s40588-018-0092-z] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/17/2022]
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30
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Urban Estuarine Beaches and Urban Water Cycle Seepage: The Influence of Temporal Scales. WATER 2018. [DOI: 10.3390/w10020173] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
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31
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Fang T, Cui Q, Huang Y, Dong P, Wang H, Liu WT, Ye Q. Distribution comparison and risk assessment of free-floating and particle-attached bacterial pathogens in urban recreational water: Implications for water quality management. THE SCIENCE OF THE TOTAL ENVIRONMENT 2018; 613-614:428-438. [PMID: 28918274 DOI: 10.1016/j.scitotenv.2017.09.008] [Citation(s) in RCA: 40] [Impact Index Per Article: 6.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/31/2017] [Revised: 08/30/2017] [Accepted: 09/02/2017] [Indexed: 06/07/2023]
Abstract
The risk of pathogen exposure in recreational water is a concern worldwide. Moreover, suspended particles, as ideal shelters for pathogens, in these waters also need attention. However, the risk caused by the pathogen-particle attachment is largely unknown. Accordingly, water samples in three recreational lakes in Beijing were collected and separated into free-floating (FL, 0.22-5μm) and particle-attached (PA, >5μm) fractions. Next-generation sequencing (NGS) was employed to determine the diversity of genera containing pathogens, and quantitative PCR (qPCR) was used to assess the presence of genes from Escherichia coli (uidA), Salmonella enterica (invA), Aeromonas spp. (aerA), Mycobacterium avium (16S) and Pseudomonas aeruginosa (oaa). The NGS results showed stable pathogen genera composition distinctions between the PA and FL fractions. Some genera, such as Aeromonas and Mycobacterium, exhibited higher abundances in the PA fractions. qPCR revealed that most of the gene concentrations were higher within particles than were FL fractions. Some gene levels showed correlations with the particle concentrations and lake nutrient levels. Further quantitative microbial risk assessment (QMRA) of selected strains (S. enterica and M. avium) indicated a higher health risk during secondary contact activities in lakes with more nutrients and particles. We concluded that suspended particles (mainly composed of algae) in urban recreational water might influence the pathogen distribution and could serve as reservoirs for pathogen contamination, with important management implications.
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Affiliation(s)
- Tingting Fang
- State Key Joint Laboratory on Environment Simulation and Pollution Control, School of Environment, Tsinghua University, Beijing 100084, China
| | - Qijia Cui
- State Key Joint Laboratory on Environment Simulation and Pollution Control, School of Environment, Tsinghua University, Beijing 100084, China
| | - Yong Huang
- State Key Joint Laboratory on Environment Simulation and Pollution Control, School of Environment, Tsinghua University, Beijing 100084, China
| | - Peiyan Dong
- State Key Joint Laboratory on Environment Simulation and Pollution Control, School of Environment, Tsinghua University, Beijing 100084, China
| | - Hui Wang
- State Key Joint Laboratory on Environment Simulation and Pollution Control, School of Environment, Tsinghua University, Beijing 100084, China.
| | - Wen-Tso Liu
- Department of Civil and Environmental Engineering, University of Illinois at Urbana Champaign, Urbana, IL 61801, United States
| | - Quanhui Ye
- State Key Joint Laboratory on Environment Simulation and Pollution Control, School of Environment, Tsinghua University, Beijing 100084, China
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Graham KE, Prussin AJ, Marr LC, Sassoubre LM, Boehm AB. Microbial community structure of sea spray aerosols at three California beaches. FEMS Microbiol Ecol 2018; 94:4810542. [DOI: 10.1093/femsec/fiy005] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/06/2017] [Accepted: 01/12/2018] [Indexed: 02/04/2023] Open
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Thapaliya D, Hellwig EJ, Kadariya J, Grenier D, Jefferson AJ, Dalman M, Kennedy K, DiPerna M, Orihill A, Taha M, Smith TC. Prevalence and Characterization of Staphylococcus aureus and Methicillin-Resistant Staphylococcus aureus on Public Recreational Beaches in Northeast Ohio. GEOHEALTH 2017; 1:320-332. [PMID: 32158979 PMCID: PMC7007083 DOI: 10.1002/2017gh000106] [Citation(s) in RCA: 25] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/30/2017] [Revised: 10/30/2017] [Accepted: 11/14/2017] [Indexed: 05/06/2023]
Abstract
Staphylococcus aureus can cause severe life-threatening illnesses such as sepsis and endocarditis. Although S. aureus has been isolated from marine water and intertidal beach sand, only a few studies have been conducted to assess prevalence of S. aureus at freshwater recreational beaches. As such, we aimed to determine prevalence and molecular characteristics of S. aureus in water and sand at 10 freshwater recreational beaches in Northeast Ohio, USA. Samples were analyzed using standard microbiology methods, and resulting isolates were typed by spa typing and multilocus sequence typing. The overall prevalence of S. aureus in sand and water samples was 22.8% (64/280). The prevalence of methicillin-resistant S. aureus (MRSA) was 8.2% (23/280). The highest prevalence was observed in summer (45.8%; 55/120) compared to fall (4.2%; 5/120) and spring (10.0%; 4/40). The overall prevalence of Panton-Valentine leukocidin genes among S. aureus isolates was 21.4% (15/70), and 27 different spa types were identified. The results of this study indicate that beach sand and freshwater of Northeast Ohio were contaminated with S. aureus, including MRSA. The high prevalence of S. aureus in summer months and presence of human-associated strains may indicate the possibility of role of human activity in S. aureus contamination of beach water and sand. While there are several possible routes for S. aureus contamination, S. aureus prevalence was higher in sites with wastewater treatment plants proximal to the beaches.
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Affiliation(s)
- Dipendra Thapaliya
- Department of Biostatistics, Environmental Health Sciences and Epidemiology, College of Public HealthKent State UniversityKentOHUSA
| | - Emily J. Hellwig
- Department of Biostatistics, Environmental Health Sciences and Epidemiology, College of Public HealthKent State UniversityKentOHUSA
| | - Jhalka Kadariya
- Department of Biostatistics, Environmental Health Sciences and Epidemiology, College of Public HealthKent State UniversityKentOHUSA
| | - Dylan Grenier
- Department of Biostatistics, Environmental Health Sciences and Epidemiology, College of Public HealthKent State UniversityKentOHUSA
| | - Anne J. Jefferson
- Department of Geology, College of Arts and SciencesKent State UniversityKentOHUSA
| | - Mark Dalman
- Department of Biostatistics, Environmental Health Sciences and Epidemiology, College of Public HealthKent State UniversityKentOHUSA
| | - Kristen Kennedy
- Department of Biostatistics, Environmental Health Sciences and Epidemiology, College of Public HealthKent State UniversityKentOHUSA
| | - Mackenzi DiPerna
- Department of Biostatistics, Environmental Health Sciences and Epidemiology, College of Public HealthKent State UniversityKentOHUSA
| | - Adrienne Orihill
- Department of Biostatistics, Environmental Health Sciences and Epidemiology, College of Public HealthKent State UniversityKentOHUSA
| | - Mohammed Taha
- Department of Biostatistics, Environmental Health Sciences and Epidemiology, College of Public HealthKent State UniversityKentOHUSA
| | - Tara C. Smith
- Department of Biostatistics, Environmental Health Sciences and Epidemiology, College of Public HealthKent State UniversityKentOHUSA
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Akanbi OE, Njom HA, Fri J, Otigbu AC, Clarke AM. Antimicrobial Susceptibility of Staphylococcus aureus Isolated from Recreational Waters and Beach Sand in Eastern Cape Province of South Africa. INTERNATIONAL JOURNAL OF ENVIRONMENTAL RESEARCH AND PUBLIC HEALTH 2017; 14:ijerph14091001. [PMID: 28862669 PMCID: PMC5615538 DOI: 10.3390/ijerph14091001] [Citation(s) in RCA: 46] [Impact Index Per Article: 6.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 06/20/2017] [Revised: 08/25/2017] [Accepted: 08/30/2017] [Indexed: 02/08/2023]
Abstract
Background: Resistance of Staphylococcus aureus to commonly used antibiotics is linked to their ability to acquire and disseminate antimicrobial-resistant determinants in nature, and the marine environment may serve as a reservoir for antibiotic-resistant bacteria. This study determined the antibiotic sensitivity profile of S.aureus isolated from selected beach water and intertidal beach sand in the Eastern Cape Province of South Africa. Methods: Two hundred and forty-nine beach sand and water samples were obtained from 10 beaches from April 2015 to April 2016. Staphylococcus aureus was isolated from the samples using standard microbiological methods and subjected to susceptibility testing to 15 antibiotics. Methicillin-resistant Staphylococcus aureus (MRSA) was detected by susceptibility to oxacillin and growth on Brilliance MRSA II agar. Antibiotic resistance genes including mecA, femA rpoB, blaZ, ermB, ermA, ermC, vanA, vanB, tetK and tetM were screened. Results: Thirty isolates (12.3%) were positive for S. aureus by PCR with over 50% showing phenotypic resistance to methicillin. Resistance of S. aureus to antibiotics varied considerably with the highest resistance recorded to ampicillin and penicillin (96.7%), rifampicin and clindamycin (80%), oxacillin (73.3%) and erythromycin (70%). S.aureus revealed varying susceptibility to imipenem (96.7%), levofloxacin (86.7%), chloramphenicol (83.3%), cefoxitin (76.7%), ciprofloxacin (66.7%), gentamycin (63.3%), tetracycline and sulfamethoxazole-trimethoprim (56.7%), and vancomycin and doxycycline (50%). All 30 (100%) S. aureus isolates showed multiple antibiotic-resistant patterns (resistant to three or more antibiotics). The mecA, femA, rpoB, blaZ, ermB and tetM genes were detected in 5 (22.7%), 16 (53.3%), 11 (45.8%), 16 (55.2%), 15 (71.4%), and 8 (72.7%) isolates respectively; Conclusions: Results from this study indicate that beach water and sand from the Eastern Cape Province of South Africa may be potential reservoirs of antibiotic-resistant S. aureus which could be transmitted to exposed humans and animals.
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Affiliation(s)
- Olufemi Emmanuel Akanbi
- Microbial Pathogenicity and Molecular Epidemiology Research Group (MPMERG), Department of Biochemistry and Microbiology, University of Fort Hare, Private Bag X1314, Alice 5700, South Africa.
| | - Henry Akum Njom
- Microbial Pathogenicity and Molecular Epidemiology Research Group (MPMERG), Department of Biochemistry and Microbiology, University of Fort Hare, Private Bag X1314, Alice 5700, South Africa.
| | - Justine Fri
- Microbial Pathogenicity and Molecular Epidemiology Research Group (MPMERG), Department of Biochemistry and Microbiology, University of Fort Hare, Private Bag X1314, Alice 5700, South Africa.
| | - Anthony C Otigbu
- Microbial Pathogenicity and Molecular Epidemiology Research Group (MPMERG), Department of Biochemistry and Microbiology, University of Fort Hare, Private Bag X1314, Alice 5700, South Africa.
| | - Anna M Clarke
- Microbial Pathogenicity and Molecular Epidemiology Research Group (MPMERG), Department of Biochemistry and Microbiology, University of Fort Hare, Private Bag X1314, Alice 5700, South Africa.
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Zimmer-Faust AG, Thulsiraj V, Marambio-Jones C, Cao Y, Griffith JF, Holden PA, Jay JA. Effect of freshwater sediment characteristics on the persistence of fecal indicator bacteria and genetic markers within a Southern California watershed. WATER RESEARCH 2017; 119:1-11. [PMID: 28433878 DOI: 10.1016/j.watres.2017.04.028] [Citation(s) in RCA: 21] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/01/2016] [Revised: 03/22/2017] [Accepted: 04/09/2017] [Indexed: 06/07/2023]
Abstract
In this study, the aging of culturable FIB and DNA representing genetic markers for Enterococcus spp. (ENT1A), general Bacteroides (GB3), and human-associated Bacteroides (HF183) in freshwater sediments was evaluated. Freshwater sediment was collected from four different sites within the upper and lower reach of the Topanga Creek Watershed and two additional comparator sites within the Santa Monica Bay, for a total of six sites. Untreated (ambient) and oven-dried (reduced microbiota) sediment was inoculated with 5% sewage and artificial freshwater. Microcosms were held for a 21-day period and sampled on day 0, 1, 3, 5, 7, 12, and 21. There were substantial differences in decay among the sediments tested, and decay rates were related to sediment characteristics. In the ambient sediments, smaller particle size and higher levels of organic matter and nutrients (nitrogen and phosphorus) were associated with increased persistence of the GB3 marker and culturable Escherichia coli (cEC) and enterococci (cENT). The HF183 marker exhibited decay rates of -0.50 to -0.96 day-1, which was 2-5 times faster in certain ambient sediments than decay of culturable FIB and the ENT1A and GB3 markers. The ENT1A and GB3 markers decayed at rates of between -0.07 and -0.28 and -0.10 to -0.44 day-1, and cEC and cENT decayed at rates of between -0.22 and -0.81 and -0.03 and -0.40 day-1, respectively. In the oven-dried sediments, increased persistence of all indicators and potential for limited growth of culturable FIB and the GB3 and ENT1A markers was observed. A simplified two-box model using the HF183 marker and cENT decay rates generated from the microcosm experiments was applied to two reaches within the Topanga Canyon watershed in order to provide context for the variability in decay rates observed. The model predicted lower ambient concentrations of enterococci in sediment in the upper (90 MPN g-1) versus lower Topanga watershed (530 MPN g-1) and low ambient levels of the HF183 marker (below the LLOQ) in sediments in both lower and upper watersheds. It is important to consider the variability in the persistence of genetic markers and FIB when evaluating indicators of fecal contamination in sediments, even within one watershed.
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Affiliation(s)
- Amity G Zimmer-Faust
- Department of Civil and Environmental Engineering, University of California at Los Angeles, Los Angeles, CA 90095, United States
| | - Vanessa Thulsiraj
- Department of Civil and Environmental Engineering, University of California at Los Angeles, Los Angeles, CA 90095, United States
| | - Catalina Marambio-Jones
- Department of Civil and Environmental Engineering, University of California at Los Angeles, Los Angeles, CA 90095, United States
| | - Yiping Cao
- Southern California Coastal Water Research Project, 3535 Harbor Blvd Ste 110, Costa Mesa, CA 92626, United States
| | - John F Griffith
- Southern California Coastal Water Research Project, 3535 Harbor Blvd Ste 110, Costa Mesa, CA 92626, United States
| | - Patricia A Holden
- Earth Research Institute and Bren School of Environmental Science & Management, University of California, Santa Barbara, CA 93106, United States
| | - Jennifer A Jay
- Department of Civil and Environmental Engineering, University of California at Los Angeles, Los Angeles, CA 90095, United States.
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McMinn BR, Ashbolt NJ, Korajkic A. Bacteriophages as indicators of faecal pollution and enteric virus removal. Lett Appl Microbiol 2017; 65:11-26. [PMID: 28304098 PMCID: PMC6089083 DOI: 10.1111/lam.12736] [Citation(s) in RCA: 87] [Impact Index Per Article: 12.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/23/2016] [Revised: 03/10/2017] [Accepted: 03/11/2017] [Indexed: 01/17/2023]
Abstract
Bacteriophages are an attractive alternative to faecal indicator bacteria (FIB), particularly as surrogates of enteric virus fate and transport, due to their closer morphological and biological properties. Based on a review of published data, we summarize densities of coliphages (F+ and somatic), Bacteroides spp. and enterococci bacteriophages (phages) in individual human waste, raw wastewater, ambient fresh and marine waters and removal through wastewater treatment processes utilizing traditional treatments. We also provide comparisons with FIB and enteric viruses whenever possible. Lastly, we examine fate and transport characteristics in the aquatic environment and provide an overview of the environmental factors affecting their survival. In summary, concentrations of bacteriophages in various sources were consistently lower than FIB, but more reflective of infectious enteric virus levels. Overall, our investigation indicates that bacteriophages may be adequate viral surrogates, especially in built systems, such as wastewater treatment plants. SIGNIFICANCE AND IMPACT OF THE STUDY Bacteriophage are alternative fecal indicators that may be better surrogates for viral pathogens than fecal indicator bacteria (FIB). This report offers a summary of the existing literature concerning the utility of bacteriophage as indicators of viral presence (fecal sources and surface waters) and persistence (in built infrastructure and aquatic environments). Our findings indicate that bacteriophage levels in all matrices examined are consistently lower than FIB, but similar to viral pathogens. Furthermore, in built infrastructure (e.g. wastewater treatment systems) bacteriophage closely mimic viral pathogen persistence suggesting they may be adequate sentinels of enteric virus removal.
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Affiliation(s)
- Brian R. McMinn
- National Exposure Research Laboratory, Office of Research and Development, United States Environmental Protection Agency, 26 West Martin Luther King Drive, Cincinnati, OH 45268 United States
| | - Nicholas J. Ashbolt
- University of Alberta, School of Public Health, 3-57D South Academic Building, Edmonton, AB T6G 2G7, Canada
| | - Asja Korajkic
- National Exposure Research Laboratory, Office of Research and Development, United States Environmental Protection Agency, 26 West Martin Luther King Drive, Cincinnati, OH 45268 United States
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Romão D, Staley C, Ferreira F, Rodrigues R, Sabino R, Veríssimo C, Wang P, Sadowsky M, Brandão J. Next-generation sequencing and culture-based techniques offer complementary insights into fungi and prokaryotes in beach sands. MARINE POLLUTION BULLETIN 2017; 119:351-358. [PMID: 28442200 DOI: 10.1016/j.marpolbul.2017.04.036] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/16/2016] [Revised: 04/18/2017] [Accepted: 04/18/2017] [Indexed: 06/07/2023]
Abstract
A next-generation sequencing (NGS) approach, in conjunction with culture-based methods, was used to examine fungal and prokaryotic communities for the presence of potential pathogens in beach sands throughout Portugal. Culture-based fungal enumeration revealed low and variable concentrations of the species targeted (yeasts and dermatophytes), which were underrepresented in the community characterized by NGS targeting the ITS1 region. Conversely, NGS indicated that the potentially pathogenic species Purpureocillium liliacinum comprised nearly the entire fungal community. Culturable fecal indicator bacterial concentrations were low throughout the study and unrelated to communities characterized by NGS. Notably, the prokaryotic communities characterized revealed a considerable abundance of archaea. Results highlight differences in communities between methods in beach sand monitoring but indicate the techniques offer complementary insights. Thus, there is a need to leverage culture-based methods with NGS methods, using a toolbox approach, to determine appropriate targets and metrics for beach sand monitoring to adequately protect public health.
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Affiliation(s)
- Daniela Romão
- Water and Soils Unit - Department of Environmental Health, National Institute of Health Dr Ricardo Jorge, Av. Padre Cruz, 1649-016 Lisboa, Portugal
| | - Christopher Staley
- BioTechnology Institute, University of Minnesota, Saint Paul, MN 55108, United States
| | - Filipa Ferreira
- Water and Soils Unit - Department of Environmental Health, National Institute of Health Dr Ricardo Jorge, Av. Padre Cruz, 1649-016 Lisboa, Portugal
| | - Raquel Rodrigues
- Water and Soils Unit - Department of Environmental Health, National Institute of Health Dr Ricardo Jorge, Av. Padre Cruz, 1649-016 Lisboa, Portugal
| | - Raquel Sabino
- Reference Unit for Parasitic and Fungal Infections - Department of Infectious Diseases, National Institute of Health Dr Ricardo Jorge, Av. Padre Cruz, 1649-016 Lisboa, Portugal
| | - Cristina Veríssimo
- Reference Unit for Parasitic and Fungal Infections - Department of Infectious Diseases, National Institute of Health Dr Ricardo Jorge, Av. Padre Cruz, 1649-016 Lisboa, Portugal
| | - Ping Wang
- BioTechnology Institute, University of Minnesota, Saint Paul, MN 55108, United States
| | - Michael Sadowsky
- BioTechnology Institute, University of Minnesota, Saint Paul, MN 55108, United States; Department of Soil, Water, and Climate, University of Minnesota, Saint Paul, MN 55108, United States.
| | - João Brandão
- Water and Soils Unit - Department of Environmental Health, National Institute of Health Dr Ricardo Jorge, Av. Padre Cruz, 1649-016 Lisboa, Portugal.
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Thapaliya D, Dalman M, Kadariya J, Little K, Mansell V, Taha MY, Grenier D, Smith TC. Characterization of Staphylococcus aureus in Goose Feces from State Parks in Northeast Ohio. ECOHEALTH 2017; 14:303-309. [PMID: 28283923 DOI: 10.1007/s10393-017-1227-z] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/20/2016] [Revised: 01/18/2017] [Accepted: 01/30/2017] [Indexed: 05/23/2023]
Abstract
Staphylococcus aureus can colonize a range of species. Although numerous studies have isolated pathogenic bacteria from wild birds, very little is known regarding S. aureus and their potential to spread methicillin-resistant (MRSA) strains. The objective of this study was to determine the presence and molecular characteristics of S. aureus in geese fecal samples collected from ten state parks across Northeast Ohio (NEO). A total of 182 fecal samples from Canada geese (Branta canadensis) were collected in April 2015. Isolates were characterized using multi-locus sequence (MLST) and spa typing, as well as PCR to detect the presence of Panton-Valentine leukocidin (PVL), mecA, and scn genes. Antibiotic susceptibility testing was done via Vitek-2 system. The overall contamination by S. aureus in fecal samples was 7.1% (13/182); 7/182 (3.8%) were MRSA and 6/182 (3.3%) were methicillin-susceptible S. aureus (MSSA). One isolate was positive for PVL. A total of eight different spa types were observed. MLST included ST5, ST8, ST291, ST298, and ST2111. One (7.7%) MSSA isolate was multi-drug resistant. The S. aureus contamination in NEO state parks ranged from 0% (park 1, 4, 8, 9) to 35% (7/20) (park 5). Parks 2, 3, 6, and 7 had 5% (1/20) positive. The results of this study indicate that the feces of geese collected at various state parks in NEO may harbor S. aureus.
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Affiliation(s)
- Dipendra Thapaliya
- Department of Biostatistics, Environmental Health Sciences and Epidemiology, College of Public Health, Kent State University, 750 Hilltop Drive, Kent, OH, 44242, USA
| | - Mark Dalman
- Department of Biostatistics, Environmental Health Sciences and Epidemiology, College of Public Health, Kent State University, 750 Hilltop Drive, Kent, OH, 44242, USA
| | - Jhalka Kadariya
- Department of Biostatistics, Environmental Health Sciences and Epidemiology, College of Public Health, Kent State University, 750 Hilltop Drive, Kent, OH, 44242, USA
| | - Katie Little
- Department of Biostatistics, Environmental Health Sciences and Epidemiology, College of Public Health, Kent State University, 750 Hilltop Drive, Kent, OH, 44242, USA
| | - Victoria Mansell
- Department of Biostatistics, Environmental Health Sciences and Epidemiology, College of Public Health, Kent State University, 750 Hilltop Drive, Kent, OH, 44242, USA
| | - Mohammed Y Taha
- Department of Biostatistics, Environmental Health Sciences and Epidemiology, College of Public Health, Kent State University, 750 Hilltop Drive, Kent, OH, 44242, USA
- Ministry of Science and Technology, Baghdad, Iraq
| | - Dylan Grenier
- Department of Biostatistics, Environmental Health Sciences and Epidemiology, College of Public Health, Kent State University, 750 Hilltop Drive, Kent, OH, 44242, USA
| | - Tara C Smith
- Department of Biostatistics, Environmental Health Sciences and Epidemiology, College of Public Health, Kent State University, 750 Hilltop Drive, Kent, OH, 44242, USA.
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Mohiuddin MM, Salama Y, Schellhorn HE, Golding GB. Shotgun metagenomic sequencing reveals freshwater beach sands as reservoir of bacterial pathogens. WATER RESEARCH 2017; 115:360-369. [PMID: 28340372 DOI: 10.1016/j.watres.2017.02.057] [Citation(s) in RCA: 24] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/20/2016] [Revised: 02/24/2017] [Accepted: 02/25/2017] [Indexed: 05/06/2023]
Abstract
Recreational waters and adjacent beach sands harbor complex microbial communities which may contain human pathogens that cannot be detected by conventional methods. Here, we investigate the diversity of bacterial populations inhabiting four freshwater beaches of the Great Lakes region using shotgun metagenomic sequencing approach. Our analysis suggests that average taxonomic richness and alpha diversity are significantly higher (P < 0.001) in beach sands compared to the corresponding water environments. Compared to the water environments, beach sands harbored taxa from a more diverse range of phyla, including a higher proportion of sequences from unclassified phyla. Unique phyla were also identified in sand which included species from Aquificae, Candidatus Microgenomates, Latescibacteria, and Candidatus Aminicenantes. Sequences originating from pathogens were detected in both sand and water, with some pathogens enriched in both environments. Both lakes exhibited similar community composition suggesting that geographic location did not appear to have any major impact on bacterial diversity. These findings reveal the diversity of bacterial communities of freshwater beaches and highlight the importance of monitoring pathogens in recreational beaches, especially in the sand environment of these beaches.
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Affiliation(s)
- Mahi M Mohiuddin
- Department of Biology, McMaster University, Hamilton, ON, Canada
| | - Yasser Salama
- Department of Biology, McMaster University, Hamilton, ON, Canada
| | | | - G Brian Golding
- Department of Biology, McMaster University, Hamilton, ON, Canada.
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Mika KB, Chavarria KA, Imamura G, Tang C, Torres R, Jay JA. Sources and persistence of fecal indicator bacteria and Bacteroidales in sand as measured by culture-based and culture-independent methods: A case study at Santa Monica Pier, California. WATER, AIR, AND SOIL POLLUTION 2017; 228:124. [PMID: 30853729 PMCID: PMC6404519 DOI: 10.1007/s11270-017-3291-y] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/09/2023]
Abstract
This study investigated causes of persistent fecal indicator bacteria (FIB) in beach sand under the pier in Santa Monica, CA. FIB levels were up to 1,000 times higher in sand underneath the pier than that collected from adjacent to the pier, with the highest concentrations under the pier in spring and fall. Escherichia coli (EC) and enterococci (ENT) under the pier were significantly positively correlated with moisture (ρ = 0.61, p < 0.001, n = 59; ρ = 0.43, p < 0.001, n = 59, respectively), and ENT levels measured by qPCR (qENT) were much higher than those measured by membrane filtration (cENT). Microcosm experiments tested the ability of EC, qENT, cENT, and general Bacteroidales (GenBac) to persist under in-situ moisture conditions (10% and 0.1%). Decay rates of qENT, cENT, and GenBac were not significantly different from zero at either moisture level, while decay rates for EC were relatively rapid during the microcosm at 10% moisture (k = 0.7 days-1). Gull/pelican marker was detected at eight of 12 sites and no human-associated markers (TaqHF183 and HumM2) were detected at any site during a one-day site survey. Results from this study indicate that the high levels of FIB observed likely stem from environmental sources combined with high persistence of FIB under the pier.
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Affiliation(s)
- Kathryn B Mika
- Department of Civil and Environmental Engineering, University of California Los Angeles, Los Angeles, CA 90095
| | - Karina A Chavarria
- Department of Civil and Environmental Engineering, University of California Los Angeles, Los Angeles, CA 90095
| | - Greg Imamura
- Department of Civil and Environmental Engineering, University of California Los Angeles, Los Angeles, CA 90095
| | - Chay Tang
- Department of Civil and Environmental Engineering, University of California Los Angeles, Los Angeles, CA 90095
| | - Robert Torres
- Department of Civil and Environmental Engineering, University of California Los Angeles, Los Angeles, CA 90095
| | - Jennifer A. Jay
- Department of Civil and Environmental Engineering, University of California Los Angeles, Los Angeles, CA 90095
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Distribution and Differential Survival of Traditional and Alternative Indicators of Fecal Pollution at Freshwater Beaches. Appl Environ Microbiol 2017; 83:AEM.02881-16. [PMID: 27940538 DOI: 10.1128/aem.02881-16] [Citation(s) in RCA: 18] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/27/2016] [Accepted: 12/02/2016] [Indexed: 12/30/2022] Open
Abstract
Alternative indicators have been developed that can be used to identify host sources of fecal pollution, yet little is known about how their distribution and fate compare to traditional indicators. Escherichia coli and enterococci were widely distributed at the six beaches studied and were detected in almost 95% of water samples (n = 422) and 100% of sand samples (n = 400). Berm sand contained the largest amount of E. coli (P < 0.01), whereas levels of enterococci were highest in the backshore (P < 0.01). E. coli and enterococci were the lowest in water, using a weight-to-volume comparison. The gull-associated Catellicoccus marimammalium (Gull2) marker was found in over 80% of water samples, regardless of E. coli levels, and in 25% of sand samples. Human-associated Bacteroides (HB) and Lachnospiraceae (Lachno2) were detected in only 2.4% of water samples collected under baseflow and post-rain conditions but produced a robust signal after a combined sewage overflow, despite low E. coli concentrations. Burdens of E. coli and enterococci in water and sand were disproportionately high in relation to alternative indicators when comparing environmental samples to source material. In microcosm studies, Gull2, HB, and Lachno2 quantitative PCR (qPCR) signals were reduced twice as quickly as those from E. coli and enterococci and approximately 20% faster than signals from culturable E. coli High concentrations of alternative indicators in source material illustrated their high sensitivity for the identification of fecal sources; however, differential survival and the potential for long-term persistence of traditional fecal indicators complicate the use of alternative indicator data to account for the levels of E. coli and enterococci in environmental samples. IMPORTANCE E. coli and enterococci are general indicators of fecal pollution and may persist in beach sand, making their use problematic for many applications. This study demonstrates that gull fecal pollution is widespread at Great Lakes beaches, whereas human and ruminant contamination is evident only after major rain events. An exploration of sand as a reservoir for indicators found that E. coli was ubiquitous, while gull host markers were detected in only 25% of samples. In situ sand beach microcosms provided decay rate constants for E. coli and enterococci relative to alternative indicators, which establish comparative benchmarks that would be helpful to distinguish recent from past pollution. Overall, alternative indicators are useful for identifying sources and assessing potentially high health risk contamination events; however, beach managers should be cautious in attempting to directly link their detection to the levels of E. coli or enterococci.
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Ives AK, Antaki E, Stewart K, Francis S, Jay-Russell MT, Sithole F, Kearney MT, Griffin MJ, Soto E. Detection of Salmonella enterica Serovar Montevideo and Newport in Free-ranging Sea Turtles and Beach Sand in the Caribbean and Persistence in Sand and Seawater Microcosms. Zoonoses Public Health 2016; 64:450-459. [PMID: 28009107 DOI: 10.1111/zph.12324] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/14/2016] [Indexed: 12/01/2022]
Abstract
Salmonellae are Gram-negative zoonotic bacteria that are frequently part of the normal reptilian gastrointestinal flora. The main objective of this project was to estimate the prevalence of non-typhoidal Salmonella enterica in the nesting and foraging populations of sea turtles on St. Kitts and in sand from known nesting beaches. Results suggest a higher prevalence of Salmonella in nesting leatherback sea turtles compared with foraging green and hawksbill sea turtles. Salmonella was cultured from 2/9 and identified by molecular diagnostic methods in 3/9 leatherback sea turtle samples. Salmonella DNA was detected in one hawksbill turtle, but viable isolates were not recovered from any hawksbill sea turtles. No Salmonella was detected in green sea turtles. In samples collected from nesting beaches, Salmonella was only recovered from a single dry sand sample. All recovered isolates were positive for the wzx gene, consistent with the O:7 serogroup. Further serotyping characterized serovars Montevideo and Newport present in cloacal and sand samples. Repetitive-element palindromic PCR (rep-PCR) fingerprint analysis and pulsed-field gel electrophoresis of the 2014 isolates from turtles and sand as well as archived Salmonella isolates recovered from leatherback sea turtles in 2012 and 2013, identified two distinct genotypes and four different pulsotypes, respectively. The genotyping and serotyping were directly correlated. To determine the persistence of representative strains of each serotype/genotype in these environments, laboratory-controlled microcosm studies were performed in water and sand (dry and wet) incubated at 25 or 35°C. Isolates persisted for at least 32 days in most microcosms, although there were significant decreases in culturable bacteria in several microcosms, with the greatest reduction in dry sand incubated at 35°C. This information provides a better understanding of the epizootiology of Salmonella in free-ranging marine reptiles and the potential public health risks associated with human interactions with these animals in the Caribbean.
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Affiliation(s)
- A-K Ives
- Department of Biomedical Sciences, Ross University School of Veterinary Medicine, Basseterre, St. Kitts
| | - E Antaki
- Western Center for Food Safety, University of California, Davis, CA, USA
| | - K Stewart
- Department of Biomedical Sciences, Ross University School of Veterinary Medicine, Basseterre, St. Kitts
- St. Kitts Sea Turtle Monitoring Network, Basseterre, St Kitts
| | - S Francis
- Department of Biomedical Sciences, Ross University School of Veterinary Medicine, Basseterre, St. Kitts
| | - M T Jay-Russell
- Western Center for Food Safety, University of California, Davis, CA, USA
| | - F Sithole
- Department of Biomedical Sciences, Ross University School of Veterinary Medicine, Basseterre, St. Kitts
| | - M T Kearney
- Department of Pathobiological Sciences, School of Veterinary Medicine, Louisiana State University, Baton Rouge, LA, USA
| | - M J Griffin
- Department of Pathobiology and Population Medicine, College of Veterinary Medicine, Mississippi State University, Stoneville, MS, USA
| | - E Soto
- Department of Medicine and Epidemiology, School of Veterinary Medicine, University of California-Davis, Davis, CA, USA
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Abreu R, Figueira C, Romão D, Brandão J, Freitas MC, Andrade C, Calado G, Ferreira C, Campos A, Prada S. Sediment characteristics and microbiological contamination of beach sand - A case-study in the archipelago of Madeira. THE SCIENCE OF THE TOTAL ENVIRONMENT 2016; 573:627-638. [PMID: 27585431 DOI: 10.1016/j.scitotenv.2016.08.160] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/07/2016] [Revised: 08/21/2016] [Accepted: 08/22/2016] [Indexed: 05/06/2023]
Abstract
Beach sand can harbour pathogenic and opportunistic microorganisms, as well as faecal indicator bacteria that influence directly the bathing water quality. Pathogenic and opportunistic microorganisms often raise concern of exposure during beach related recreational activities. In this work, three different types of sandy beaches (natural basaltic, natural calcareous and artificial calcareous) of the Archipelago of Madeira (Portugal) were sampled for bacterial and fungal contaminants and grain size distribution, during four years (2010-2013). Following an extreme weather event in 2010, the faecal indicator bacteria levels spiked, returning to base levels shortly thereafter. The same phenomenon occurred with fungi, where potentially pathogenic fungi were the dominant group. Yeast-like fungi and dermatophytes were, however, mainly associated to months of higher usage by recreational users. Statistical analysis showed higher contamination of sediment in artificial beaches compared to natural beaches and granulometry and chemical composition of sand did not influence in the microbial loads. Instead, bather density and the influence of coastal protection structures needed to maintain the volume of artificial beach sand regarding the removal potential of wave induced currents are obvious influencing factors.
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Affiliation(s)
- Roberto Abreu
- Faculdade de Ciências Exatas e da Engenharia da Universidade da Madeira, Campus Universitário da Penteada, 9000-390 Funchal, Madeira, Portugal
| | - Celso Figueira
- Faculdade de Ciências Exatas e da Engenharia da Universidade da Madeira, Campus Universitário da Penteada, 9000-390 Funchal, Madeira, Portugal.
| | - Daniela Romão
- Instituto Nacional de Saúde Dr. Ricardo Jorge, Avenida Padre Cruz, 1649-016 Lisboa, Portugal
| | - João Brandão
- Instituto Nacional de Saúde Dr. Ricardo Jorge, Avenida Padre Cruz, 1649-016 Lisboa, Portugal
| | - M Conceição Freitas
- Faculdade de Ciências da Universidade de Lisboa, Instituto Dom Luis, Bloco C6, 3° piso, Campo Grande, 1749-016 Lisboa, Portugal
| | - César Andrade
- Faculdade de Ciências da Universidade de Lisboa, Instituto Dom Luis, Bloco C6, 3° piso, Campo Grande, 1749-016 Lisboa, Portugal
| | - Graça Calado
- Laboratório de Saúde Pública, IASaúde, Rua das Pretas n° 1, 9004-515 Funchal, Portugal
| | - Carmen Ferreira
- Laboratório Regional de Veterinária e Segurança Alimentar, Caminho das Quebradas de Baixo n° 79, 9000-254 Funchal, Portugal
| | - Ana Campos
- Laboratório Regional de Veterinária e Segurança Alimentar, Caminho das Quebradas de Baixo n° 79, 9000-254 Funchal, Portugal
| | - Susana Prada
- Faculdade de Ciências Exatas e da Engenharia da Universidade da Madeira, Campus Universitário da Penteada, 9000-390 Funchal, Madeira, Portugal; Centro de Vulcanologia e Avaliação de Riscos Geológicos, Universidade dos Açores, 9501-801 Ponta Delgada, Açores, Portugal
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Wu J, Cao Y, Young B, Yuen Y, Jiang S, Melendez D, Griffith JF, Stewart JR. Decay of Coliphages in Sewage-Contaminated Freshwater: Uncertainty and Seasonal Effects. ENVIRONMENTAL SCIENCE & TECHNOLOGY 2016; 50:11593-11601. [PMID: 27709921 DOI: 10.1021/acs.est.6b03916] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/06/2023]
Abstract
Understanding the fate of enteric viruses in water is vital for protection of water quality. However, the decay of enteric viruses is not well characterized, and its uncertainty has not been examined yet. In this study, the decay of coliphages, an indicator for enteric viruses, was investigated in situ under both sunlit and shaded conditions as well as in summer and winter. The decay rates of coliphages and their uncertainties were analyzed using a Bayesian approach. The results from the summer experiments revealed that the decay rates of somatic coliphages were significantly higher in sunlight (1.29 ± 0.06 day-1) than in shade (0.96 ± 0.04 day-1), but the decay rates of male-specific (F+) coliphages were not significantly different between sunlight (1.09 ± 0.09 day-1) and shaded treatments (1.11 ± 0.08 day-1). The decay rates of both F+ coliphages (0.25 ± 0.02 day-1) and somatic coliphages (0.12 ± 0.01 day-1) in winter were considerably lower than those in summer. Temperature and chlorophyll a (chla) concentration varied significantly (p < 0.001) between the two seasons, suggesting that these parameters might be important contributors to the seasonal variation of coliphage decay. Additionally, the Bayesian approach provided full distributions of decay rates and reduced the uncertainty, offering useful information for comparing decay rates under different conditions.
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Affiliation(s)
- Jianyong Wu
- Department of Environmental Sciences and Engineering, Gillings School of Global Public Health, The University of North Carolina at Chapel Hill , Chapel Hill, North Carolina 27599, United States
| | - Yiping Cao
- Southern California Coastal Water Research Project Authority , Costa Mesa, California 92626, United States
| | - Brianna Young
- Department of Environmental Sciences and Engineering, Gillings School of Global Public Health, The University of North Carolina at Chapel Hill , Chapel Hill, North Carolina 27599, United States
| | - Yvonne Yuen
- Department of Environmental Sciences and Engineering, Gillings School of Global Public Health, The University of North Carolina at Chapel Hill , Chapel Hill, North Carolina 27599, United States
| | - Sharon Jiang
- Department of Environmental Sciences and Engineering, Gillings School of Global Public Health, The University of North Carolina at Chapel Hill , Chapel Hill, North Carolina 27599, United States
| | - Daira Melendez
- Department of Environmental Sciences and Engineering, Gillings School of Global Public Health, The University of North Carolina at Chapel Hill , Chapel Hill, North Carolina 27599, United States
| | - John F Griffith
- Southern California Coastal Water Research Project Authority , Costa Mesa, California 92626, United States
| | - Jill R Stewart
- Department of Environmental Sciences and Engineering, Gillings School of Global Public Health, The University of North Carolina at Chapel Hill , Chapel Hill, North Carolina 27599, United States
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Abia ALK, Ubomba-Jaswa E, Momba MNB. Competitive Survival of Escherichia coli, Vibrio cholerae, Salmonella typhimurium and Shigella dysenteriae in Riverbed Sediments. MICROBIAL ECOLOGY 2016; 72:881-889. [PMID: 27193001 DOI: 10.1007/s00248-016-0784-y] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/08/2016] [Accepted: 05/08/2016] [Indexed: 06/05/2023]
Abstract
Studies on the survival of bacterial enteric pathogens in riverbed sediments have mostly focused on individual organisms. Reports on the competitive survival of these pathogens in riverbed sediments under the same experimental setup are limited. We investigated the survival of Escherichia coli, Salmonella enterica ser. Typhimurium, Vibrio cholerae and Shigella dysenteriae in riverbed sediments of the Apies River. Experiments were performed in flow chambers containing three sediment types and connected to aquarium pumps immersed in river water to maintain continuous water circulation. Each chamber was inoculated with ~107 CFU/mL (final concentration) of each microorganism and kept at 4, 20 and 30 °C. Chambers were sampled on days 0, 1, 2, 7, 14 and 28. At 4 °C, only E. coli and S. typhimurium survived throughout the 28 experimental days. V. cholerae had the shortest survival time at this temperature and was not detected in any of the sediment chambers 24 h after inoculation. S. dysenteriae only survived until day 7. At an increased temperature of 20 °C, only S. dysenteriae was not detected on day 28 of the experiment. At 30 °C, V. cholerae and Salmonella survived longer (28 days) than E. coli (14 days) and S. dysenteriae (4 days). Vibrio cholerae was shown to have the highest T 90 values (32 days) in all sediment types at 20 and 30 °C. We conclude that the sediments of the Apies River present a favourable environment for the survival of indicator and pathogenic bacteria depending on the prevailing temperature.
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Affiliation(s)
- Akebe Luther King Abia
- Department of Environmental, Water and Earth Science, Tshwane University of Technology, Arcadia Campus, 175 Nelson Mandela Drive, Pretoria, 0001, South Africa.
| | - Eunice Ubomba-Jaswa
- Natural Resources and the Environment, CSIR, PO Box 395, Pretoria, 0001, South Africa
| | - Maggy Ndombo Benteke Momba
- Department of Environmental, Water and Earth Science, Tshwane University of Technology, Arcadia Campus, 175 Nelson Mandela Drive, Pretoria, 0001, South Africa.
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Current Status of Marker Genes of Bacteroides and Related Taxa for Identifying Sewage Pollution in Environmental Waters. WATER 2016. [DOI: 10.3390/w8060231] [Citation(s) in RCA: 87] [Impact Index Per Article: 10.9] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
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Griffith JF, Weisberg SB, Arnold BF, Cao Y, Schiff KC, Colford JM. Epidemiologic evaluation of multiple alternate microbial water quality monitoring indicators at three California beaches. WATER RESEARCH 2016; 94:371-381. [PMID: 27040577 DOI: 10.1016/j.watres.2016.02.036] [Citation(s) in RCA: 38] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/12/2015] [Revised: 02/12/2016] [Accepted: 02/14/2016] [Indexed: 06/05/2023]
Abstract
INTRODUCTION Advances in molecular methods provide new opportunities for directly measuring pathogens or host-associated markers of fecal pollution instead of relying on fecal indicator bacteria (FIB) alone for beach water quality monitoring. Adoption of new indicators depends on identifying relationships between either the presence or concentration of the indicators and illness among swimmers. Here we present results from three epidemiologic studies in which a broad range of bacterial and viral indicators of fecal contamination were measured simultaneously by either culture or molecular methods along with Enterococcus to assess whether they provide better health risk prediction than current microbial indicators of recreational water quality. METHODS We conducted prospective cohort studies at three California beaches -- Avalon Bay (Avalon), Doheny State Beach (Doheny), Surfrider State Beach (Malibu) -- during the summers of 2007, 2008 and 2009. The studies enrolled 10,785 swimmers across the beaches and recorded each swimmer's water exposure. Water and sand samples were collected several times per day at multiple locations at each beach and analyzed for up to 41 target indicators using 67 different methodologies. Interviewers contacted participants by phone 10-14 days later and recorded symptoms of gastrointestinal illness occurring after their beach visit. Regression models were used to evaluate the association between water quality indicators and gastrointestinal illness among swimmers at each beach. RESULTS F+ coliphage (measured using EPA Method 1602) exhibited a stronger association with GI illness than did EPA Method 1600 at the two beaches where it was measured, while a molecular method, F+ RNA Coliphage Genotype II, was the only indicator significantly associated with GI illness at Malibu. MRSA, a known pathogen, had the strongest association with GI illness of any microbe measured at Avalon. There were two methods targeting human-associated fecal anaerobic bacteria that were more strongly associated with GI illness than EPA Method 1600, but only at Avalon. No indicator combinations consistently had a higher odds ratio than EPA Method 1600, but one composite indicator, based on the number of pathogens detected at a beach, was significantly associated with gastrointestinal illness at both Avalon and Doheny when freshwater flow was high. DISCUSSION While EPA Method1600 performed adequately at two beaches based on its consistency of association with gastrointestinal illness and the precision of its estimated associations, F+ coliphage measured by EPA Method 1602 had a stronger association with GI illness under high risk conditions at the two beaches where it was measured. One indicator, F+ Coliphage Genotype II was the only indicator significantly associated with GI illness at Malibu. Several indicators, particularly those targeting human associated bacteria, exhibited relationships with GI illness that were equal to or greater than that of EPA Method 1600 at Avalon, which has a focused human fecal source. Our results suggest that site-specific conditions at each beach determine which indicator or indicators best predict GI illness.
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Affiliation(s)
- John F Griffith
- Department of Microbiology, Southern California Coastal Water Research Project, 3535 Harbor Blvd. Suite 110, Costa Mesa, CA 92626, USA.
| | - Stephen B Weisberg
- Southern California Coastal Water Research Project Authority, Costa Mesa, CA, USA
| | - Benjamin F Arnold
- Division of Epidemiology, School of Public Health, University of California, Berkeley, USA
| | - Yiping Cao
- Southern California Coastal Water Research Project Authority, Costa Mesa, CA, USA
| | - Kenneth C Schiff
- Southern California Coastal Water Research Project Authority, Costa Mesa, CA, USA
| | - John M Colford
- Division of Epidemiology, School of Public Health, University of California, Berkeley, USA
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Regional Similarities and Consistent Patterns of Local Variation in Beach Sand Bacterial Communities throughout the Northern Hemisphere. Appl Environ Microbiol 2016; 82:2751-2762. [PMID: 26921429 DOI: 10.1128/aem.00247-16] [Citation(s) in RCA: 24] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/24/2016] [Accepted: 02/23/2016] [Indexed: 11/20/2022] Open
Abstract
UNLABELLED Recent characterization of the bacterial community structure in beach sands has revealed patterns of biogeography similar to those observed in aquatic environments. Studies to date, however, have mainly focused on subtidal sediments from marine beaches. Here, we investigate the bacterial diversity, using Illumina-based sequencing of the V5-V6 region of the 16S rRNA gene, at 11 beaches representing those next to the Great Lakes, Florida, and the Pacific Ocean. The alpha diversity differed significantly among regions (P< 0.0001), while the within-region diversity was more similar. The beta diversity also differed by region (P< 0.001), where freshwater sands had significantly higher abundances of taxa within the Actinobacteria, Betaproteobacteria, and Verrucomicrobia than marine environments. In contrast, marine sands harbored greater abundances of Gamma proteobacteria and Planctomycetes, and those from Florida had more Delta proteobacteria and Firmicutes Marine beaches had significantly different phylogenetic community structures (P ≤ 0.018), but freshwater and Florida beaches showed fewer within-region phylogenetic differences. Furthermore, regionally distinct patterns in taxonomic variation were observed in backshore sands, which had communities distinct from those in nearshore sands (P< 0.001). Sample depth minimally influenced the community composition. The results of this study reveal distinct bacterial community structures in sand on a broad geographic scale but moderate regional similarity and suggest that local variation is primarily related to the distance from the shoreline. This study offers a novel comparison of the bacterial communities in freshwater and marine beach sands and provides an important basis for future comparisons and analyses to elucidate factors affecting microbial ecology in this underexplored environment. IMPORTANCE This study presents a large-scale geographic characterization of the bacterial communities present in beach sands. While previous studies have evaluated how environmental factors influence bacterial community composition, few have evaluated bacterial communities in freshwater sands. Furthermore, the use of a consistent methodology to characterize bacterial communities here allowed a novel comparison of communities across geographic regions. We reveal that while the community composition in sands at individual beaches is distinct, beach sands within the same region harbor similar assemblages of bacteria and these assemblages differ greatly between regions. In addition, moisture, associated with distance from the shoreline, strongly influences the bacteria present in sands and more strongly influences the bacteria present than sample depth does. Thus, the data presented here offer an important basis for a broader characterization of the ecology of bacteria in sands, which may also be relevant to public health and resource management initiatives.
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Dynamics of size-fractionated bacterial communities during the coastal dispersal of treated municipal effluents. Appl Microbiol Biotechnol 2016; 100:5839-48. [PMID: 26944731 DOI: 10.1007/s00253-016-7408-9] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/20/2015] [Revised: 02/13/2016] [Accepted: 02/20/2016] [Indexed: 10/22/2022]
Abstract
Everyday huge amount of treated municipal wastewater is discharged into the coastal seawater. However, microbial biomarkers for the municipal effluent instead of the fecal species from raw sewage have not been proposed. Meanwhile, bacterial taxa for degrading large amounts of input organics have not been fully understood. In this study, raw effluent and serial water samples were collected from the coastal dispersal of two sewage treatment plants in Xiamen, China. Free-living (FL) and particle-associated (PA) bacterial communities were analyzed via high-throughput sequencing of 16S rRNA gene and quantitative PCR to measure bacterial abundance. The PA bacterial communities in our samples exhibited higher cell abundance, alpha diversity, and population dynamics than the FL bacterial communities, which supports greater environmental significance of the PA bacterial communities. Two non-fecal but typical genera in activated sludge, Zoogloea and Dechloromonas, exhibited decreased but readily detectable abundance along the effluent dispersal distance. Furthermore, the dominating microbial species near the outfalls were related to well-known marine indigenous taxa, such as SAR11 clade, OM60 clade, low-GC Actinobacteria, and unclassified Flavobacteriales, as well as the less understood taxa like Pseudohongiella and Microbacteriaceae. It is interesting that these taxa exhibited two types of correlation patterns with COD concentration. Our study suggested Zoogloea as a potential indicator of municipal effluents and also proposed potential utilizers of residual effluent COD in marine environments.
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Abstract
This paper reviews the latest evidence provided by epidemiological studies and quantitative microbial risk assessments (QMRAs) of infection risk from recreational water use. Studies for review were selected following a PubMed search for articles published between January 2010 and April 2014. Epidemiological studies show a generally elevated risk of gastrointestinal illness in bathers compared to non-bathers but often no clear association with water quality as measured by faecal indicator bacteria; this is especially true where study sites are impacted by non-point source pollution. Evidence from QMRAs support the lack of a consistent water quality association for non-point source-impacted beaches. It is suggested that source attribution, through quantified microbial source apportionment, linked with appropriate use of microbial source tracking methods should be employed as an integral part of future epidemiological surveys.
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Affiliation(s)
- Lorna Fewtrell
- Centre for Research into Environment and Health (CREH), Department of Geography and Earth Sciences, Aberystwyth University, Ceredigion, SY23 3DB UK
| | - David Kay
- Centre for Research into Environment and Health (CREH), Department of Geography and Earth Sciences, Aberystwyth University, Ceredigion, SY23 3DB UK
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