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For: Pei Z, Sadiq FA, Han X, Zhao J, Zhang H, Ross RP, Lu W, Chen W. Comprehensive Scanning of Prophages in Lactobacillus: Distribution, Diversity, Antibiotic Resistance Genes, and Linkages with CRISPR-Cas Systems. mSystems 2021;6:e0121120. [PMID: 34060909 DOI: 10.1128/mSystems.01211-20] [Citation(s) in RCA: 43] [Impact Index Per Article: 10.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022]  Open
Number Cited by Other Article(s)
1
Aziz K, Gilbert JA, Zaidi AH. Genomic and Phenotypic Insight into the Probiotic Potential of Lactic Acid Bacterial spp. Associated with the Human Gut Mucosa. Probiotics Antimicrob Proteins 2025;17:1236-1264. [PMID: 38070037 DOI: 10.1007/s12602-023-10193-0] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 11/27/2023] [Indexed: 05/07/2025]
2
Sliti A, Kim RH, Lee D, Shin JH. Whole genome sequencing and In silico analysis of the safety and probiotic features of Lacticaseibacillus paracasei FMT2 isolated from fecal microbiota transplantation (FMT) capsules. Microb Pathog 2025;202:107405. [PMID: 40024538 DOI: 10.1016/j.micpath.2025.107405] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/25/2024] [Revised: 02/13/2025] [Accepted: 02/20/2025] [Indexed: 03/04/2025]
3
Lu S, Yue K, He S, Huang Y, Ren Z, Xu J. Safety Assessment of Lactiplantibacillus plantarum GUANKE Based on Whole-Genome Sequencing, Phenotypic, and Anti-Inflammatory Capacity Analysis. Microorganisms 2025;13:873. [PMID: 40284709 PMCID: PMC12029457 DOI: 10.3390/microorganisms13040873] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/04/2025] [Revised: 03/26/2025] [Accepted: 04/07/2025] [Indexed: 04/29/2025]  Open
4
Patra S, Pradhan B, Roychowdhury A. Complete genome sequence, metabolic profiling and functional studies reveal Ligilactobacillus salivarius LS-ARS2 is a promising biofilm-forming probiotic with significant antioxidant, antibacterial, and antibiofilm potential. Front Microbiol 2025;16:1535388. [PMID: 40182284 PMCID: PMC11965632 DOI: 10.3389/fmicb.2025.1535388] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/27/2024] [Accepted: 03/06/2025] [Indexed: 04/05/2025]  Open
5
Deng X, Li H, Wu A, He J, Mao X, Dai Z, Tian G, Cai J, Tang J, Luo Y. Composition, Influencing Factors, and Effects on Host Nutrient Metabolism of Fungi in Gastrointestinal Tract of Monogastric Animals. Animals (Basel) 2025;15:710. [PMID: 40075993 PMCID: PMC11898470 DOI: 10.3390/ani15050710] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/07/2025] [Revised: 02/26/2025] [Accepted: 02/28/2025] [Indexed: 03/14/2025]  Open
6
Komatwar K, Sundararaman A, Raphel S, Halami PM. Whole Genome Analysis of Limosilactobacillus fermentum MCC0552 for Probiotic Functionalities and Comparative Genomic Study with Reference Strains. Probiotics Antimicrob Proteins 2025:10.1007/s12602-025-10467-9. [PMID: 39971853 DOI: 10.1007/s12602-025-10467-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 01/21/2025] [Indexed: 02/21/2025]
7
Mejía-Caballero A, López-Sánchez R, Ramos-Cerrillo B, Garciarrubio A, Segovia L. Genomic insights into habitat adaptation of Lactobacillus species. World J Microbiol Biotechnol 2025;41:61. [PMID: 39900839 PMCID: PMC11790720 DOI: 10.1007/s11274-025-04275-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/19/2024] [Accepted: 01/24/2025] [Indexed: 02/05/2025]
8
Agolino G, Cristofolini M, Vaccalluzzo A, Tagliazucchi D, Cattivelli A, Pino A, Caggia C, Solieri L, Randazzo CL. Genome Mining and Characterization of Two Novel Lacticaseibacillus rhamnosus Probiotic Candidates with Bile Salt Hydrolase Activity. Biomolecules 2025;15:86. [PMID: 39858480 PMCID: PMC11763831 DOI: 10.3390/biom15010086] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/09/2024] [Revised: 12/30/2024] [Accepted: 12/31/2024] [Indexed: 01/27/2025]  Open
9
Pan M, O'Flaherty S, Hibberd A, Gerdes S, Morovic W, Barrangou R. The curated Lactobacillus acidophilus NCFM genome provides insights into strain specificity and microevolution. BMC Genomics 2025;26:1. [PMID: 39754036 PMCID: PMC11697832 DOI: 10.1186/s12864-024-11177-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/17/2024] [Accepted: 12/20/2024] [Indexed: 01/07/2025]  Open
10
Dooley D, Ryu S, Giannone RJ, Edwards J, Dien BS, Slininger PJ, Trinh CT. Expanded genome and proteome reallocation in a novel, robust Bacillus coagulans strain capable of utilizing pentose and hexose sugars. mSystems 2024;9:e0095224. [PMID: 39377583 PMCID: PMC11575207 DOI: 10.1128/msystems.00952-24] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/13/2024] [Accepted: 09/06/2024] [Indexed: 10/09/2024]  Open
11
da Silva TF, Glória RDA, Americo MF, Freitas ADS, de Jesus LCL, Barroso FAL, Laguna JG, Coelho-Rocha ND, Tavares LM, le Loir Y, Jan G, Guédon É, Azevedo VADC. Unlocking the Potential of Probiotics: A Comprehensive Review on Research, Production, and Regulation of Probiotics. Probiotics Antimicrob Proteins 2024;16:1687-1723. [PMID: 38539008 DOI: 10.1007/s12602-024-10247-x] [Citation(s) in RCA: 5] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 03/12/2024] [Indexed: 10/02/2024]
12
Pei Z, Liu Y, Zhao F, Wang H, Zhao J, Chen W, Lu W. Antibiotic Susceptibility Testing and Establishment of Tentative Species-Specific Microbiological Cut-off Values for Bifidobacteria Isolated from Chinese Population. Probiotics Antimicrob Proteins 2024;16:1657-1672. [PMID: 37515711 DOI: 10.1007/s12602-023-10128-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 07/20/2023] [Indexed: 07/31/2023]
13
Kandasamy S, Lee KH, Yoo J, Yun J, Kang HB, Kim JE, Oh MH, Ham JS. Whole genome sequencing of Lacticaseibacillus casei KACC92338 strain with strong antioxidant activity, reveals genes and gene clusters of probiotic and antimicrobial potential. Front Microbiol 2024;15:1458221. [PMID: 39391606 PMCID: PMC11464305 DOI: 10.3389/fmicb.2024.1458221] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/02/2024] [Accepted: 09/12/2024] [Indexed: 10/12/2024]  Open
14
Zhang L, Kulyar MF, Niu T, Yang S, Chen W. Comparative Genomics of Limosilactobacillus reuteri YLR001 Reveals Genetic Diversity and Probiotic Properties. Microorganisms 2024;12:1636. [PMID: 39203478 PMCID: PMC11356486 DOI: 10.3390/microorganisms12081636] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/25/2024] [Revised: 08/03/2024] [Accepted: 08/07/2024] [Indexed: 09/03/2024]  Open
15
Roberts A, Spang D, Sanozky-Dawes R, Nethery MA, Barrangou R. Characterization of Ligilactobacillus salivarius CRISPR-Cas systems. mSphere 2024;9:e0017124. [PMID: 38990000 PMCID: PMC11288051 DOI: 10.1128/msphere.00171-24] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/28/2024] [Accepted: 06/11/2024] [Indexed: 07/12/2024]  Open
16
Kingkaew E, Tanaka N, Shiwa Y, Sitdhipol J, Nuhwa R, Tanasupawat S. Genomic Assessment of Potential Probiotic Lactiplantibacillus plantarum CRM56-2 Isolated from Fermented Tea Leaves. Trop Life Sci Res 2024;35:249-269. [PMID: 39234476 PMCID: PMC11371405 DOI: 10.21315/tlsr2024.35.2.12] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/04/2023] [Accepted: 02/19/2024] [Indexed: 09/06/2024]  Open
17
Hu WF, Yang JY, Wang JJ, Yuan SF, Yue XJ, Zhang Z, Zhang YQ, Meng JY, Li YZ. Characteristics and immune functions of the endogenous CRISPR-Cas systems in myxobacteria. mSystems 2024;9:e0121023. [PMID: 38747603 PMCID: PMC11237760 DOI: 10.1128/msystems.01210-23] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/13/2023] [Accepted: 04/15/2024] [Indexed: 06/19/2024]  Open
18
Sornsenee P, Surachat K, Wong T, Kaewdech A, Saki M, Romyasamit C. Lyophilized cell-free supernatants of Limosilactobacillus fermentum T0701 exhibited antibacterial activity against Helicobacter pylori. Sci Rep 2024;14:13632. [PMID: 38871850 PMCID: PMC11176309 DOI: 10.1038/s41598-024-64443-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/14/2024] [Accepted: 06/10/2024] [Indexed: 06/15/2024]  Open
19
Sornsenee P, Surachat K, Kang DK, Mendoza R, Romyasamit C. Probiotic Insights from the Genomic Exploration of Lacticaseibacillus paracasei Strains Isolated from Fermented Palm Sap. Foods 2024;13:1773. [PMID: 38891001 PMCID: PMC11172291 DOI: 10.3390/foods13111773] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/09/2024] [Revised: 05/31/2024] [Accepted: 06/04/2024] [Indexed: 06/20/2024]  Open
20
Ma J, Qian C, Hu Q, Zhang J, Gu G, Liang X, Zhang L. The bacteriome-coupled phage communities continuously contract and shift to orchestrate the traditional rice vinegar fermentation. Food Res Int 2024;184:114244. [PMID: 38609223 DOI: 10.1016/j.foodres.2024.114244] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/17/2023] [Revised: 03/12/2024] [Accepted: 03/14/2024] [Indexed: 04/14/2024]
21
Cui Y, Qu X. CRISPR-Cas systems of lactic acid bacteria and applications in food science. Biotechnol Adv 2024;71:108323. [PMID: 38346597 DOI: 10.1016/j.biotechadv.2024.108323] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/14/2023] [Revised: 12/29/2023] [Accepted: 02/09/2024] [Indexed: 02/17/2024]
22
Shawon J, Pell LG, Kabir M, Evans K, Hasan M, Li G, Qamar H, Starke CWE, Kurukulasuriya S, Al Mahmud A, Sherman PM, Sarker SA, Roth DE, Haque R. Detection and absolute quantification of Lactiplantibacillus plantarum ATCC 202195 by quantitative real-time PCR. Microbiol Spectr 2024;12:e0271123. [PMID: 38018977 PMCID: PMC10783133 DOI: 10.1128/spectrum.02711-23] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/29/2023] [Accepted: 10/09/2023] [Indexed: 11/30/2023]  Open
23
Fang Z, Xu M, Shen S, Sun W, Yu Q, Wu Q, Xiang L, Weng Q. Prediction and characterization of prophages of Stenotrophomonas maltophilia reveals a remarkable phylogenetic diversity of prophages. Sci Rep 2023;13:22941. [PMID: 38135742 PMCID: PMC10746704 DOI: 10.1038/s41598-023-50449-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/27/2023] [Accepted: 12/20/2023] [Indexed: 12/24/2023]  Open
24
Aziz G, Zaidi A, Sullivan DJO'. Insights from metagenome-assembled genomes on the genetic stability and safety of over-the-counter probiotic products. Curr Genet 2023;69:213-234. [PMID: 37237157 DOI: 10.1007/s00294-023-01271-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/02/2023] [Revised: 04/04/2023] [Accepted: 05/10/2023] [Indexed: 05/28/2023]
25
Xu D, Zhang X, Yuan X, Han H, Xue Y, Guo X. Hazardous risk of antibiotic resistance genes: Host occurrence, distribution, mobility and vertical transmission from different environments to corn silage. ENVIRONMENTAL POLLUTION (BARKING, ESSEX : 1987) 2023;338:122671. [PMID: 37788797 DOI: 10.1016/j.envpol.2023.122671] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/19/2023] [Revised: 09/25/2023] [Accepted: 09/30/2023] [Indexed: 10/05/2023]
26
Dorosky RJ, Lola SL, Brown HA, Schreier JE, Dreher-Lesnick SM, Stibitz S. Characterization of Lactobacilli Phage Endolysins and Their Functional Domains-Potential Live Biotherapeutic Testing Reagents. Viruses 2023;15:1986. [PMID: 37896764 PMCID: PMC10610939 DOI: 10.3390/v15101986] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/17/2023] [Revised: 09/18/2023] [Accepted: 09/21/2023] [Indexed: 10/29/2023]  Open
27
Johnson A, Miller EA, Weber B, Figueroa CF, Aguayo JM, Johny AK, Noll S, Brannon J, Kozlowicz B, Johnson TJ. Evidence of host specificity in Lactobacillus johnsonii genomes and its influence on probiotic potential in poultry. Poult Sci 2023;102:102858. [PMID: 37390550 PMCID: PMC10331464 DOI: 10.1016/j.psj.2023.102858] [Citation(s) in RCA: 9] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/01/2023] [Revised: 06/01/2023] [Accepted: 06/05/2023] [Indexed: 07/02/2023]  Open
28
Phuengjayaem S, Pakdeeto A, Kingkaew E, Tunvongvinis T, Somphong A, Tanasupawat S. Genome sequences and functional analysis of Levilactobacillus brevis LSF9-1 and Pediococcus acidilactici LSF1-1 from fermented fish cake (Som-fak) with gamma-aminobutyric acid (GABA) production. Funct Integr Genomics 2023;23:158. [PMID: 37171680 DOI: 10.1007/s10142-023-01085-1] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/12/2023] [Revised: 05/02/2023] [Accepted: 05/02/2023] [Indexed: 05/13/2023]
29
Ozen M, Piloquet H, Schaubeck M. Limosilactobacillus fermentum CECT5716: Clinical Potential of a Probiotic Strain Isolated from Human Milk. Nutrients 2023;15:2207. [PMID: 37432320 PMCID: PMC10181152 DOI: 10.3390/nu15092207] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/22/2023] [Revised: 04/28/2023] [Accepted: 05/02/2023] [Indexed: 07/12/2023]  Open
30
Goh YX, Wang M, Hou XP, He Y, Ou HY. Analysis of CRISPR-Cas Loci and their Targets in Levilactobacillus brevis. Interdiscip Sci 2023:10.1007/s12539-023-00555-1. [PMID: 36849628 DOI: 10.1007/s12539-023-00555-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/06/2022] [Revised: 02/15/2023] [Accepted: 02/15/2023] [Indexed: 03/01/2023]
31
In Silico Evidence of the Multifunctional Features of Lactiplantibacillus pentosus LPG1, a Natural Fermenting Agent Isolated from Table Olive Biofilms. Foods 2023;12:foods12050938. [PMID: 36900455 PMCID: PMC10000683 DOI: 10.3390/foods12050938] [Citation(s) in RCA: 10] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/16/2023] [Revised: 02/16/2023] [Accepted: 02/17/2023] [Indexed: 02/25/2023]  Open
32
Abraha HB, Lee JW, Kim G, Ferdiansyah MK, Ramesha RM, Kim KP. Genomic diversity and comprehensive taxonomical classification of 61 Bacillus subtilis group member infecting bacteriophages, and the identification of ortholog taxonomic signature genes. BMC Genomics 2022;23:835. [PMID: 36526963 PMCID: PMC9756591 DOI: 10.1186/s12864-022-09055-w] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/08/2022] [Accepted: 11/28/2022] [Indexed: 12/23/2022]  Open
33
Bradford EL, Wax N, Bueren EK, Walke JB, Fell R, Belden LK, Haak DC. Comparative genomics of Lactobacillaceae from the gut of honey bees, Apis mellifera, from the Eastern United States. G3 (BETHESDA, MD.) 2022;12:jkac286. [PMID: 36331337 PMCID: PMC9713430 DOI: 10.1093/g3journal/jkac286] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/12/2022] [Accepted: 10/03/2022] [Indexed: 04/13/2024]
34
Ambros CL, Ehrmann MA. Distribution, inducibility, and characterisation of prophages in Latilactobacillus sakei. BMC Microbiol 2022;22:267. [PMID: 36348293 PMCID: PMC9641780 DOI: 10.1186/s12866-022-02675-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/11/2022] [Accepted: 10/20/2022] [Indexed: 11/11/2022]  Open
35
Abriouel H, Manetsberger J, Caballero Gómez N, Benomar N. In silico genomic analysis of the potential probiotic Lactiplantibacillus pentosus CF2-10N reveals promising beneficial effects with health promoting properties. Front Microbiol 2022;13:989824. [PMID: 36406402 PMCID: PMC9670130 DOI: 10.3389/fmicb.2022.989824] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/08/2022] [Accepted: 10/04/2022] [Indexed: 10/29/2023]  Open
36
Raethong N, Santivarangkna C, Visessanguan W, Santiyanont P, Mhuantong W, Chokesajjawatee N. Whole-genome sequence analysis for evaluating the safety and probiotic potential of Lactiplantibacillus pentosus 9D3, a gamma-aminobutyric acid (GABA)-producing strain isolated from Thai pickled weed. Front Microbiol 2022;13:969548. [PMID: 36212812 PMCID: PMC9539741 DOI: 10.3389/fmicb.2022.969548] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/15/2022] [Accepted: 09/06/2022] [Indexed: 11/25/2022]  Open
37
Zhang C, Ma K, Nie K, Deng M, Luo W, Wu X, Huang Y, Wang X. Assessment of the safety and probiotic properties of Roseburia intestinalis: A potential “Next Generation Probiotic”. Front Microbiol 2022;13:973046. [PMID: 36160246 PMCID: PMC9493362 DOI: 10.3389/fmicb.2022.973046] [Citation(s) in RCA: 9] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/19/2022] [Accepted: 08/05/2022] [Indexed: 12/04/2022]  Open
38
Qian C, Ma J, Liang J, Zhang L, Liang X. Comprehensive deciphering prophages in genus Acetobacter on the ecology, genomic features, toxin–antitoxin system, and linkage with CRISPR-Cas system. Front Microbiol 2022;13:951030. [PMID: 35983328 PMCID: PMC9379143 DOI: 10.3389/fmicb.2022.951030] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/23/2022] [Accepted: 07/07/2022] [Indexed: 11/13/2022]  Open
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Li Y, Yang Y, Ma L, Liu J, An Q, Zhang C, Yin G, Cao Z, Pan H. Comparative Analyses of Antibiotic Resistance Genes in Jejunum Microbiota of Pigs in Different Areas. Front Cell Infect Microbiol 2022;12:887428. [PMID: 35719330 PMCID: PMC9204423 DOI: 10.3389/fcimb.2022.887428] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/01/2022] [Accepted: 04/25/2022] [Indexed: 11/28/2022]  Open
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Ledormand P, Desmasures N, Midoux C, Rué O, Dalmasso M. Investigation of the Phageome and Prophages in French Cider, a Fermented Beverage. Microorganisms 2022;10:1203. [PMID: 35744720 PMCID: PMC9230842 DOI: 10.3390/microorganisms10061203] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/24/2022] [Revised: 06/01/2022] [Accepted: 06/08/2022] [Indexed: 12/10/2022]  Open
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Safety Assessment of Lactiplantibacillus plantarum TWK10 Based on Whole-Genome Sequencing, Phenotypic, and Oral Toxicity Analysis. Microorganisms 2022;10:microorganisms10040784. [PMID: 35456834 PMCID: PMC9031848 DOI: 10.3390/microorganisms10040784] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/11/2022] [Revised: 04/03/2022] [Accepted: 04/05/2022] [Indexed: 12/04/2022]  Open
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Yuan L, Fan L, Zhao H, Mgomi FC, Ni H, He G. RNA-seq reveals the phage-resistant mechanisms displayed by Lactiplantibacillus plantarum ZJU-1 isolated from Chinese traditional sourdough. Int Dairy J 2022. [DOI: 10.1016/j.idairyj.2021.105286] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/21/2023]
43
Happel AU, Balle C, Maust BS, Konstantinus IN, Gill K, Bekker LG, Froissart R, Passmore JA, Karaoz U, Varsani A, Jaspan H. Presence and Persistence of Putative Lytic and Temperate Bacteriophages in Vaginal Metagenomes from South African Adolescents. Viruses 2021;13:2341. [PMID: 34960611 PMCID: PMC8708031 DOI: 10.3390/v13122341] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/29/2021] [Revised: 11/18/2021] [Accepted: 11/18/2021] [Indexed: 12/11/2022]  Open
44
Ma Q, Pei Z, Fang Z, Wang H, Zhu J, Lee YK, Zhang H, Zhao J, Lu W, Chen W. Evaluation of Tetracycline Resistance and Determination of the Tentative Microbiological Cutoff Values in Lactic Acid Bacterial Species. Microorganisms 2021;9:2128. [PMID: 34683449 PMCID: PMC8538481 DOI: 10.3390/microorganisms9102128] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/17/2021] [Revised: 10/01/2021] [Accepted: 10/06/2021] [Indexed: 11/20/2022]  Open
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Lu W, Pei Z, Zang M, Lee YK, Zhao J, Chen W, Wang H, Zhang H. Comparative Genomic Analysis of Bifidobacterium bifidum Strains Isolated from Different Niches. Genes (Basel) 2021;12:genes12101504. [PMID: 34680899 PMCID: PMC8535415 DOI: 10.3390/genes12101504] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/07/2021] [Revised: 09/17/2021] [Accepted: 09/17/2021] [Indexed: 01/17/2023]  Open
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