Exploring the past to protect the future: an analysis of conservation paleobiology in South America

Conservation paleobiology, an expanding field, employs taphonomy tools to investigate past environmental conditions and organisms before human impacts, thereby addressing key conservation issues. This review examines the concepts, approaches and events in conservation paleobiology, emphasizing aquatic and coastal organisms and the often-overlooked contributions from Brazil and South America. South America, with its vulnerable biodiversity, unique geology and rich fossil diversity, is a natural laboratory for understanding ecosystems-a considerable potential as a center for leading conservation paleobiology research. However, South America is underrepresented, contributing to only 5% of total publications (67% of it is from Brazil). Most South American authors are geoscientists publishing mainly on mollusks, also they produced fewer studies than those from more developed countries. Noteworthy, the Brazilian National Council for Scientific and Technological Development ranks third globally in funding for conservation paleobiology articles. Clearly, conservation paleobiology is still predominantly practiced in developed nations and geoscience fields. Other challenges include underutilization of geohistorical data and a gap between theory and practice. To address these issues, future studies should integrate conservationist perspectives and align them with societal and conservation needs. Hence, the anticipated growth in South American conservation paleobiology could bolster environmental conservation and promote sustainability for future generations.

A nineteenth- and twentieth-century reproductive regime shift in benthic foraminifera from the Santa Barbara Basin, California

Long-term records that span the past several centuries and capture within-population variation are critical for distinguishing ephemeral ecosystem changes from regime shifts. Using an approximately 2 kyr record of reproductive life history from the central Santa Barbara Basin, we examined population trends in reproductive mode and accumulation rate (i.e. reproductive output) across four species in the biserial benthic foraminiferan genus Bolivina. Bolivina populations were consistently dominated by asexually produced individuals until the mid-nineteenth century, after which they exhibit an increase in variance and a decrease in the mean proportion of asexually produced individuals. At the same time, they underwent an order-of-magnitude decline in accumulation rate. The magnitude and persistence of these changes suggest that the nineteenth and twentieth centuries represent a life-history regime shift. The compounding effects of anthropogenic impacts and long-term trends in the California Current System (such as heightened deoxygenation and altered sedimentation regimes) may have pushed the Santa Barbara Basin towards increased investment in sexual reproduction.

Historical record of heavy metals in the mollusk shells of the Nile Delta

Identifying the baseline status and the timing of ecosystem disturbances are essential for restoration programs. The historical bioaccumulation of heavy metals was assessed from an 80-cm-long core from the Manzala Lagoon (Nile Delta). The heavy metal concentrations increased slightly upward and peaked around 1964, after the completion of Aswan High Dam. The metal concentrations of shells are 2-3 times less than those of bulk sediment. The topmost sediments are enriched in Cd, Cu, and Pb above USEPA. Sediment type and sediment grain size have a minor effect on the heavy metal concentration in mollusk shells, suggesting a priority over bulk sediments. Although correlated, the shells of the grazer gastropod Melanoides tuberculata have the highest concentration of all metals relative to the suspension-feeder bivalves Cerastoderma glaucum and Saccostrea cuculata. This was attributed to the influences of the eco-physiological traits, which exert a similar influence on the bioaccumulation process of all metals.

Taxonomic, phylogenetic, and functional diversity of mollusk death assemblages in coral reef and seagrass sediments from two shallow gulfs in Western Cuban Archipelago

Mollusk death assemblages are formed by shell remnants deposited in the surficial mixed layer of the seabed. Diversity patterns in tropical marine habitats still are understudied; therefore, we aimed to investigate the taxonomic, phylogenetic, and functional diversity of mollusk death assemblages at regional and local scales in coral reef sands and seagrass meadows. We collected sediment samples at 11 sites within two shallow gulfs in the Northwestern Caribbean Sea and Southeastern Gulf of Mexico. All the shells were counted and identified to species level and classified into biological traits. We identified 7113 individuals belonging to 393 species (290 gastropods, 94 bivalves, and nine scaphopods). Diversity and assemblage structure showed many similarities between gulfs given their geological and biogeographical commonalities. Reef sands had higher richness than seagrasses likely because of a more favorable balance productivity-disturbance. Reef sands were dominated by epifaunal herbivores likely feeding on microphytobenthos and bysally attached bivalves adapted to intense hydrodynamic regime. In seagrass meadows, suspension feeders dominated in exposed sites and chemosynthetic infaunal bivalves dominated where oxygen replenishment was limited. Time averaging of death assemblages was likely in the order of 100 years, with stronger effects in reef sands compared to seagrass meadows. Our research provides evidence of the high taxonomic, phylogenetic, and functional diversity of mollusk death assemblages in tropical coastal sediments as result of the influence of scale-related processes and habitat type. Our study highlights the convenience of including phylogenetic and functional traits, as well as dead shells, for a more complete assessment of mollusk biodiversity.

Ecological baselines in the Eastern Mediterranean Sea shifted long before the availability of observational time series

Native biodiversity loss and invasions by nonindigenous species (NIS) have massively altered ecosystems worldwide, but trajectories of taxonomic and functional reorganization remain poorly understood due to the scarcity of long-term data. Where ecological time series are available, their temporal coverage is often shorter than the history of anthropogenic changes, posing the risk of drawing misleading conclusions on systems' current states and future development. Focusing on the Eastern Mediterranean Sea, a region affected by massive biological invasions and the largest climate change-driven collapse of native marine biodiversity ever documented, we followed the taxonomic and functional evolution of an emerging "novel ecosystem", using a unique dataset on shelled mollusks sampled in 2005-2022 on the Israeli shelf. To quantify the alteration of observed assemblages relative to historical times, we also analyzed decades- to centuries-old ecological baselines reconstructed from radiometrically dated death assemblages, time-averaged accumulations of shells on the seafloor that constitute natural archives of past community states. Against expectations, we found no major loss of native biodiversity in the past two decades, suggesting that its collapse had occurred even earlier than 2005. Instead, assemblage taxonomic and functional richness increased, reflecting the diversification of NIS whose trait structure was, and has remained, different from the native one. The comparison with the death assemblage, however, revealed that modern assemblages are taxonomically and functionally much impoverished compared to historical communities. This implies that NIS did not compensate for the functional loss of native taxa, and that even the most complete observational dataset available for the region represents a shifted baseline that does not reflect the actual magnitude of anthropogenic changes. While highlighting the great value of observational time series, our results call for the integration of multiple information sources on past ecosystem states to better understand patterns of biodiversity loss in the Anthropocene.

Marine conservation palaeobiology: What does the late Quaternary fossil record tell us about modern-day extinctions and biodiversity threats?

Near-time conservation palaeobiology uses palaeontological, archaeological and other geohistorical records to study the late Quaternary transition of the biosphere from its pristine past to its present-day, human-altered state. Given the scarcity of data on recent extinctions in the oceans, geohistorical records are critical for documenting human-driven extinctions and extinction threats in the marine realm. The historical perspective can provide two key insights. First, geohistorical records archive the state of pre-industrial oceans at local, regional and global scales, thus enabling the detection of recent extinctions and extirpations as well as shifts in species distribution, abundance, body size and ecosystem function. Second, we can untangle the contributions of natural and anthropogenic processes by documenting centennial-to-millennial changes in the composition and diversity of marine ecosystems before and after the onset of major human impacts. This long-term perspective identifies recently emerging patterns and processes that are unprecedented, thus allowing us to better assess human threats to marine biodiversity. Although global-scale extinctions are not well documented for brackish and marine invertebrates, geohistorical studies point to numerous extirpations, declines in ecosystem functions, increases in range fragmentation and dwindling abundance of previously widespread species, indicating that marine ecosystems are accumulating a human-driven extinction debt.

The quality of the fossil record across higher taxa: compositional fidelity of phyla and classes in benthic marine associations

Although the fossil record preserves a wealth of historical data about past ecosystems, the current paradigm, which postulates that fossils provide faithful archives of ecological information, stems from research primarily focused on a single group of organisms known for their high fossilization potential: molluscs. Here, we quantify the fidelity of higher taxa (six phyla and 11 classes) by comparing live communities and sympatric dead remains (death assemblages) using comprehensive surveys of benthic marine invertebrates from coastal habitats in North Carolina (U.S.A). We found that although community composition differed between the two assemblages across phyla and classes, these differences were predictable with an overabundance of robust and more preservable groups. In addition, dead molluscs appear to be an excellent proxy for all taxa when tracking spatio-temporal patterns and shifts in community structure using a variety of ecological metrics, including measures of α, γ, and β diversity/evenness. This suggests that despite filters imposed by differential preservation of taxa and time-averaging, the fossil record is likely to be reliable with respect to relative comparisons of composition and diversity in shallow benthic marine paleocommunities. This is consistent with previous work indicating that shallow marine death assemblages can yield robust ecological estimates adequate for assessing the variability of ecosystems that existed under natural, pre-anthropogenic conditions.

Spatially associated or composite life traces from Holocene paleosols and dune sands provide evidence for past biotic interactions

Biotic interactions (e.g., predation, competition, commensalism) where organisms directly or indirectly influenced one another are of great interest to those studying the history of life but have been difficult to ascertain from fossils. Considering the usual caveats about the temporal resolution of paleontological data, traces and trace fossils in the sedimentary record can record co-occurrences of organisms or their behaviours with relatively high spatial fidelity in a location. Neoichnological studies and studies on recently buried traces, where direct trophic links or other connections between tracemakers are well-known, may help interpret when and where overlapping traces represented true biotic interactions. Examples from Holocene paleosols and other buried continental sediments in Poland include the tight association between mole and earthworm burrows, forming an ichnofabric representing a predator-prey relationship, and that of intersecting insect and root traces demonstrating the impact of trees as both ecosystem engineers and the basis for food chains. Trampling by ungulates, which leaves hoofprints and other sedimentary disturbances, may result in amensal or commensal effects on some biota in the short term and create heterogeneity that later trace-making organisms, such as invertebrate burrowers, can also respond to in turn, though such modified or composite traces may be challenging to interpret.

What is conservation paleobiology? Tracking 20 years of research and development

Conservation paleobiology has coalesced over the last two decades since its formal coining, united by the goal of applying geohistorical records to inform the conservation, management, and restoration of biodiversity and ecosystem services. Yet, the field is still attempting to form an identity distinct from its academic roots. Here, we ask a deceptively simple question: What is conservation paleobiology? To track its development as a field, we synthesize complementary perspectives from a survey of the scientific community that is familiar with conservation paleobiology and a systematic literature review of publications that use the term. We present an overview of conservation paleobiology’s research scope and compare survey participants’ perceptions of what it is and what it should be as a field. We find that conservation paleobiologists use a variety of geohistorical data in their work, although research is typified by near-time records of marine molluscs and terrestrial mammals collected over local to regional spatial scales. Our results also confirm the field’s broad disciplinary basis: survey participants indicated that conservation paleobiology can incorporate information from a wide range of disciplines spanning conservation biology, ecology, historical ecology, paleontology, and archaeology. Finally, we show that conservation paleobiologists have yet to reach a consensus on how applied the field should be in practice. The survey revealed that many participants thought the field should be more applied but that most do not currently engage with conservation practice. Reflecting on how conservation paleobiology has developed over the last two decades, we discuss opportunities to promote community cohesion, strengthen collaborations within conservation science, and align training priorities with the field’s identity as it continues to crystallize.

Living and dead bivalves are congruent surrogates for whole benthic macroinvertebrate communities in Puget Sound

To integrate paleoecological data with the “whole fauna” data used in biological monitoring, analyses usually must focus on the subset of taxa that are inherently preservable, for example by virtue of biomineralized hardparts, and those skeletal remains must also be identifiable in fragmentary or otherwise imperfect condition, thus perhaps coarsening analytical resolution to the genus or family level. Here we evaluate the ability of readily preserved bivalves to reflect patterns of compositional variation from the entire infaunal macroinvertebrate fauna as typically sampled by agencies in ocean monitoring, using data from ten long-established subtidal stations in Puget Sound, Washington State. Similarity in compositional variation among these stations was assessed for five taxonomic subsets (the whole fauna, polychaetes, malacostracans, living bivalves, dead bivalves) at four levels of taxonomic resolution (species, genera, families, orders) evaluated under four numerical transformations of the original count data (proportional abundance, square root- and fourth root-transformation, presence-absence). Using the original matrix of species-level proportional abundances of the whole fauna as a benchmark of “compositional variation,” we find that living and dead bivalves had nearly identical potential to serve as surrogates of the whole fauna; they were further offset from the whole fauna than was the polychaete subset (which dominates the whole fauna), but were far superior as surrogates than malacostracans. Genus- and family-level data were consistently strong surrogates of species-level data for most taxonomic subsets, and correlations declined for all subsets with increasing severity of data transformation, although this effect lessened for subsets with high community evenness. The strong congruence of death assemblages with living bivalves, which are themselves effective surrogates of compositional variation in the whole fauna, is encouraging for using bivalve dead-shell assemblages to complement conventional monitoring data, notwithstanding strong natural environmental gradients with potential to bias shell preservation.

Recent change in spatial distribution of the European flat oyster (Ostrea edulis) inferred from field data and empirical models of living oysters and empty shells

Marine coastal areas are increasingly affected by human activities resulting in changes in species and habitat distributions. Understanding these patterns and its causes and consequences is important for conservation and restoration of such changing habitats. One habitat that has been heavily affected by human use are the North Sea oyster beds which once were abundant but have lost large parts of its coastal distribution due to overexploitation. Based on data of living and dead assemblages of Ostrea edulis collected using video transects, we used an ensemble modeling technique to model and predict current and recent distribution of O. edulis along the Swedish west coast where its distribution is, in relative terms, still rather unaffected. We could detect a recent change in the distribution of O. edulis along the coast which to a large extent could be attributed to a change in depth distribution, suggesting that the population of O. edulis have a slightly shallower distribution today than in the past. Although a potential mismatch between living and dead assemblages, caused by a complex combination of biological and environmental conditions, needs to be considered in the interpretations drawn, it may be a way around the lack of suitable background data in management decisions. This provides important information for management and conservation of the native oyster beds. Furthermore, this study illustrates a method for identifying recent changes in species distribution using dead assemblages of bivalves.

Predation Scars Reveal Declines in Crab Populations Since the Pleistocene

Despite growing concerns over global fisheries, the stock status of most commercially exploited species are poorly understood. Fossil data provide pre-anthropogenic baselines for data-poor fisheries, yet are underutilized in fisheries management. Here, we provide the first use of predation traces to assess the status of fisheries (crab). We compared crab predation traces on living individuals of the crab prey gastropod, Tegula funebralis, to Pleistocene individuals from the same regions in southern California. There were fewer crab predation traces on modern gastropods than their Pleistocene counterparts, revealing reductions in crab abundances today compared to the Pleistocene. We conclude that: (1) regardless of the cause, immediate actions are required to avoid further population reductions of commercially exploited crabs in southern California, (2) predation traces are a rapid, cost-effective method to assess otherwise data-poor fisheries, and (3) the inclusion of fossil data provides key new insights for modern resource and fisheries management.

Mollusk death assemblages in 210Pb-dated marine sediment cores reveal recent biotic changes in the Gulf of Guanahacabibes, NW Cuba

We investigated stratigraphic changes in mollusk death assemblages and geochemistry in sediment cores from four seagrass beds and one unvegetated site in the Gulf of Guanahacabibes (GG), NW Cuba. There was a transition from mangrove to seagrass beds, associated with sea level rise ∼6000 years ago. Sediment accumulation rates during the last century showed a general rise, but increased sharply after ∼1980, likely because of human activities. The GG displayed overall high mollusk γ-diversity, and our estimate of 189 species is biased toward the low end. High β-diversity was driven by inter-site differences in grain size, vegetation cover, and nutrient input. Spatial heterogeneity within the basin influenced downcore abundance and diversity metrics, highlighting the influence of local drivers. Herbivorous gastropods dominated in seagrass beds and suspension feeder bivalves were dominant on sandy bottom. In the top parts of cores, species richness declined at two sites that were subject to high, human-mediated bulk sedimentation rates and eutrophication. Conservation measures are needed to preserve this hotspot of marine diversity.

The response of benthic foraminifera to heavy metals and grain sizes: A case study from Hainan Island, China

Benthic foraminifera, heavy metals, and sediment grain sizes were studied in three bays of Hainan Island, and canonical correspondence analysis (CCA) and nonparametric regression were used to reveal the relationship between foraminifera and their environment. According to our survey, the three bays were moderately contaminated by Mo and As and uncontaminated to moderately contaminated by Pb, Zn, Cr, Sb, and Hg. The spatial pattern of heavy metals was comparable to sediment transport trends, indicating that their distribution was determined by sediment transport. Both living and dead foraminiferal assemblages were analyzed, and their compositions were similar, although the latter had a higher density and diversity. Based on the CCA method, species were divided into three groups, each of which responded differently to heavy metals and grain sizes. The response curves of individual species to heavy metals and grain sizes were obtained by using the Loess (locally weighted regression) method.

Bivalve Diversity on the Continental Shelf and Deep Sea of the Perdido Fold Belt, Northwest Gulf of Mexico, Mexico

Mollusk diversity in coastal areas of the Gulf of Mexico (GOM) has been studied extensively, but this is not the case for deep-water habitats. We present the first quantitative characterization of mollusks in shallow and deep waters of the Perdido Fold Belt. The data came from two research cruises completed in 2017. Sediment samples were collected from 56 sites using a 0.25-m2 box corer. We tested hypotheses about spatial patterns of α, β, and γ-diversity of bivalves in two water-depth zones, the continental shelf (43–200 m) and bathyal zone (375–3563 m). A total of 301 bivalves belonging to 39 species were identified. The two zones display similar levels of γ-diversity, but host different bivalve assemblages. In general, α-diversity was higher on the continental shelf, whereas β-diversity was higher in the bathyal zone. These patterns can be explained by the higher input of carbon (energy) to the near-coast shelf zone, as well as by the greater topographic complexity of habitats in the bathyal zone. These results enabled us to propose redirection of sampling efforts for environmental characterization from continental zones to the deep-water zone, especially in the context of environmental assessments during oil and gas exploration and production.

Historical Landscape Use of Migratory Caribou: New Insights From Old Antlers

Accumulations of shed caribou antlers (Rangifer tarandus) are valuable resources for expanding the temporal scope with which we evaluate seasonal landscape use of herds. Female caribou shed their antlers within days of giving birth, thus marking calving ground locations. Antler geochemistry (87Sr/86Sr) reflects the isotopic signature of regions used during antler growth, thereby providing data on a second component of seasonal landscape use. Here, we evaluate shed caribou antlers from the Coastal Plain of the Arctic National Wildlife Refuge, Alaska. The Central and Eastern regions of the Coastal Plain are calving grounds for the Porcupine Caribou Herd, while the Western Coastal Plain supports calving by the Central Arctic Herd. We found that antler 87Sr/86Sr from the Central and Eastern Coastal Plain were isotopically indistinguishable, while antler 87Sr/86Sr from the Western Coastal Plain was significantly smaller. For each region, we compared isotopic data for “recent” antlers, which overlap the bulk of standardized state and federal caribou monitoring (early 1980s and younger), with “historical” antlers shed in years predating these records (from the 1300s to the 1970s). For Porcupine Herd females calving in the Arctic Refuge, comparisons of antler 87Sr/86Sr through time indicate that summer ranges have been consistent since at least the 1960s. However, changes between historical and recent antler 87Sr/86Sr for the Central Arctic Herd indicate a shift in summer landscape use after the late 1970s. The timing of this shift is coincident with multiple factors including increased infrastructural development in their range related to hydrocarbon extraction. Accumulations of shed caribou antlers and their isotope geochemistry extend modern datasets by decades to centuries and provide valuable baseline data for evaluating potential anthropogenic and other influences on caribou migration and landscape use.

Taphonomic information from the modern vertebrate death assemblage of Doñana National Park, Spain

Modern death assemblages provide insights about the early stages of fossilization and useful ecological information about the species inhabiting the ecosystem. We present the results of taphonomic monitoring of modern vertebrate carcasses and bones from Doñana National Park, a Mediterranean coastal ecosystem in Andalusia, Spain. Ten different habitats were surveyed. Half of them occur in active depositional environments (marshland, lake margin, river margin, beach and dunes). Most of the skeletal remains belong to land mammals larger than 5 kg in body weight (mainly wild and feral ungulates). Overall, the Doñana bone assemblage shows good preservation with little damage to the bones, partly as a consequence of the low predator pressure on large vertebrates. Assemblages from active depositional habitats differ significantly from other habitats in terms of the higher incidence of breakage and chewing marks on bones in the latter, which result from scavenging, mainly by wild boar and red fox. The lake-margin and river-margin death assemblages have high concentrations of well preserved bones that are undergoing burial and offer the greatest potential to produce fossil assemblages. The spatial distribution of species in the Doñana death assemblage generally reflects the preferred habitats of the species in life. Meadows seem to be a preferred winter habitat for male deer, given the high number of shed antlers recorded there. This study is further proof that taphonomy can provide powerful insights to better understand the ecology of modern species and to infer past and future scenarios for the fossil record.

Long-term persistence of structured habitats: seagrass meadows as enduring hotspots of biodiversity and faunal stability

Ecological studies indicate that structurally complex habitats support elevated biodiversity, stability and resilience. The long-term persistence of structured habitats and their importance in maintaining biodiverse hotspots remain underexplored. We combined geohistorical data (dead mollusc assemblages, 'DA') and contemporary surveys (live mollusc assemblages, 'LA') to assess the persistence of local seagrass habitats over multi-centennial timescales and to evaluate whether they acted as long-term drivers of biodiversity, stability and resilience of associated fauna. We sampled structured seagrass meadows and open sandy bottoms along Florida's Gulf Coast. Results indicated that: (i) LA composition differed significantly between the two habitat types, (ii) LA from seagrass sites were characterized by significantly elevated local biodiversity and significantly higher spatial stability, (iii) DA composition differed significantly between the two habitat types, and (iv) fidelity between LA and DA was significantly greater for seagrass habitats. Contemporary results support the hypotheses that local biodiversity and spatial stability of marine benthos are both elevated in structured seagrass habitats. Geohistorical results suggest that structured habitats persist as local hotspots of elevated biodiversity and faunal stability over centennial-to-millennial timescales; indicating that habitat degradation and concomitant loss within structurally complex marine systems is a key driver of declining biodiversity and resilience.

A decline in molluscan carbonate production driven by the loss of vegetated habitats encoded in the Holocene sedimentary record of the Gulf of Trieste

Carbonate sediments in non-vegetated habitats on the north-east Adriatic shelf are dominated by shells of molluscs. However, the rate of carbonate molluscan production prior to the 20th century eutrophication and overfishing on this and other shelves remains unknown because: (i) monitoring of ecosystems prior to the 20th century was scarce; and (ii) ecosystem history inferred from cores is masked by condensation and mixing. Here, based on geochronological dating of four bivalve species, carbonate production during the Holocene is assessed in the Gulf of Trieste, where algal and seagrass habitats underwent a major decline during the 20th century. Assemblages of sand-dwelling Gouldia minima and opportunistic Corbula gibba are time-averaged to >1000 years and Corbula gibba shells are older by >2000 years than shells of co-occurring Gouldia minima. This age difference is driven by temporally disjunct production of two species coupled with decimetre-scale mixing. Stratigraphic unmixing shows that Corbula gibba declined in abundance during the highstand phase and increased again during the 20th century. In contrast, one of the major contributors to carbonate sands - Gouldia minima - increased in abundance during the highstand phase, but declined to almost zero abundance over the past two centuries. Gouldia minima and herbivorous gastropods associated with macroalgae or seagrasses are abundant in the top-core increments but are rarely alive. Although Gouldia minima is not limited to vegetated habitats, it is abundant in such habitats elsewhere in the Mediterranean Sea. This live-dead mismatch reflects the difference between highstand baseline communities (with soft-bottom vegetated zones and hard-bottom Arca beds) and present-day oligophotic communities with organic-loving species. Therefore, the decline in light penetration and the loss of vegetated habitats with high molluscan production traces back to the 19th century. More than 50% of the shells on the sea floor in the Gulf of Trieste reflect inactive production that was sourced by heterozoan carbonate factory in algal or seagrass habitats.

An ecological status indicator for all time: Are AMBI and M-AMBI effective indicators of change in deep time?

Increasingly environmental management seeks to limit the impacts of human activities on ecosystems relative to some 'reference' condition, which is often the presumed pre-impacted state, however such information is limited. We explore how marine ecosystems in deep time (Late Jurassic) are characterised by AZTI's Marine Biotic Index (AMBI), and how the indices responded to natural perturbations. AMBI is widely used to detect the impacts of human disturbance and to establish management targets, and this study is the first application of these indices to a fossil fauna. Our results show AMBI detected changes in past seafloor communities (well-preserved fossil deposits) that underwent regional deoxygenation in a manner analogous to those experiencing two decades of organic pollution. These findings highlight the potential for palaeoecological data to contribute to reconstructions of pre-human marine ecosystems, and hence provide information to policy makers and regulators with greater temporal context on the nature of 'pristine' marine ecosystems.

Dissimilarity between living and dead benthic foraminiferal assemblages in the Aveiro Continental Shelf (Portugal)

This study compares living (LA) and dead (DA) benthic foraminiferal assemblages and identifies different factors that possibly cause differences in the distribution of both assemblages in the Aveiro Continental Shelf (Portugal). A total of 44 sediment samples was collected during summers of 1994 and 1995 along transects (east-west direction) and between 10 and 200 m water depth. Complex statistical analyses allow us to compare the abundance and composition of the LAs and DAs in function of depth, grain-size and total organic matter in all studied stations even in those where the numbers of individuals were rare in one or both assemblages. The highest densities and diversities of the LAs are found in the middle continental shelf on gravel deposits (coarse and very coarse sands) mostly due to the substrate stability, reduced deposition of fine sedimentary particles, availability of organic matter with high quality related to oceanic primary productivity likely induced by upwelling events, and oxygenated porewaters conditions. The DAs have, in general, higher densities and diversities than the LAs. In the outer continental shelf, the dissimilarity between both assemblages is higher due to the accumulation of tests, low dilution by sedimentary particles and scarcity of living foraminifera. Based on the comparison of LAs and DAs and considering the characteristics of the study area and the species ecology, it has been possible to understand the cause of temporal deviation between the LAs and DAs of benthic foraminifera. This deviation is much more pronounced in the inner shelf where the energy of the waves and the currents induce very dynamic sedimentary processes preventing the development of large LAs and the preservation of DAs. Some deviation also occurs in the middle shelf due to the seasonal loss of empty tests. The most well-preserved time-averaged DAs were found in the outer continental shelf.

Nineteenth-century collapse of a benthic marine ecosystem on the open continental shelf

The soft-sediment seafloor of the open continental shelf is among the least-known biomes on Earth, despite its high diversity and importance to fisheries and biogeochemical cycling. Abundant dead shells of epifaunal suspension-feeding terebratulid brachiopods (Laqueus) and scallops on the now-muddy mainland continental shelf of southern California reveal the recent, previously unsuspected extirpation of an extensive offshore shell-gravel ecosystem, evidently driven by anthropogenic siltation. Living populations of attached epifauna, which formerly existed in a middle- and outer-shelf mosaic with patches of trophically diverse muds, are restricted today to rocky seafloor along the shelf edge and to the sandier shelves of offshore islands. Geological age-dating of 190 dead brachiopod shells shows that (i) no shells have been produced on the mainland shelf within the last 100 years, (ii) their shell production declined steeply during the nineteenth century, and (iii) they had formerly been present continuously for at least 4 kyr. This loss, sufficiently rapid (less than or equal to 100 years) and thorough to represent an ecosystem collapse, coincides with intensification of alluvial-plain land use in the nineteenth century, particularly livestock grazing. Extirpation was complete by the start of twentieth-century urbanization, warming, bottom fishing and scientific surveys. The loss of this filter-feeding fauna and the new spatial homogeneity and dominance of deposit- and detritus-feeders would have altered ecosystem functioning by reducing habitat heterogeneity and seawater filtering. This discovery, attesting to the power of this geological approach to recent ecological transitions, also strongly increases the spatial scope attributable to the negative effects of siltation, and suggests that it has been under-recognized on continental shelves elsewhere as a legacy of coastal land use.

Surrogate taxa and fossils as reliable proxies of spatial biodiversity patterns in marine benthic communities

Rigorous documentation of spatial heterogeneity (β-diversity) in present-day and preindustrial ecosystems is required to assess how marine communities respond to environmental and anthropogenic drivers. However, the overwhelming majority of contemporary and palaeontological assessments have centred on single higher taxa. To evaluate the validity of single taxa as community surrogates and palaeontological proxies, we compared macrobenthic communities and sympatric death assemblages at 52 localities in Onslow Bay (NC, USA). Compositional heterogeneity did not differ significantly across datasets based on live molluscs, live non-molluscs, and all live organisms. Death assemblages were less heterogeneous spatially, likely reflecting homogenization by time-averaging. Nevertheless, live and dead datasets were greater than 80% congruent in pairwise comparisons to the literature estimates of β-diversity in other marine ecosystems, yielded concordant bathymetric gradients, and produced nearly identical ordinations consistently delineating habitats. Congruent estimates from molluscs and non-molluscs suggest that single groups can serve as reliable community proxies. High spatial fidelity of death assemblages supports the emerging paradigm of Conservation Palaeobiology. Integrated analyses of ecological and palaeontological data based on surrogate taxa can quantify anthropogenic changes in marine ecosystems and advance our understanding of spatial and temporal aspects of biodiversity.

Holocene ecosystem shifts and human-induced loss of Arca and Ostrea shell beds in the north-eastern Adriatic Sea

The molluscan assemblages in a sediment core from the north-eastern Adriatic show significant compositional changes over the past 10,000yrs related to (1) natural deepening driven by the post-glacial sea-level rise, (2) increasing abundance of skeletal sand and gravel, and (3) anthropogenic impacts. The transgressive phase (10,000-6000 BP) is characterized by strongly time-averaged communities dominated by infaunal bivalves. During the early highstand (6000-4000 BP), the abundance of epifaunal filter feeders and grazers increases, and gastropods become more important. Epifaunal dominance culminates during the late highstand (4000-2000 BP) with the development of extensive shell beds formed by large-sized Arca noae and Ostrea sp. bivalves. This community persists until the early 20th century, when it falls victim to multiple anthropogenic impacts, mainly bottom trawling, and is substituted by an infauna-dominated community indicative of instability, disturbance and organic enrichment. The re-establishment of this unique shell-bed ecosystem can be a goal for restoration efforts.

Historical ecology of a biological invasion: the interplay of eutrophication and pollution determines time lags in establishment and detection

Human disturbance modifies selection regimes, depressing native species fitness and enabling the establishment of non-indigenous species with suitable traits. A major impediment to test the effect of disturbance on invasion success is the lack of long-term data on the history of invasions. Here, we overcome this problem and reconstruct the effect of disturbance on the invasion of the bivalve Anadara transversa from sediment cores in the Adriatic Sea. We show that (1) the onset of major eutrophication in the 1970s shifted communities towards species tolerating hypoxia, and (2) A. transversa was introduced in the 1970s but failed to reach reproductive size until the late 1990s because of metal contamination, resulting in an establishment and detection lag of ~25 years. Subfossil assemblages enabled us to (1) disentangle the distinct stages of invasion, (2) quantify time-lags and (3) finely reconstruct the interaction between environmental factors and the invasion process, showing that while disturbance does promote invasions, a synergism of multiple disturbances can shift selection regimes beyond tolerance limits and induce significant time lags in establishment. The quantification of these time lags enabled us to reject the hypothesis that aquaculture was an initial vector of introduction, making shipping the most probable source.

Surges in trematode prevalence linked to centennial-scale flooding events in the Adriatic

The forecasts of increasing global temperature and sea level rise have led to concern about the response of parasites to anthropogenic climate change. Whereas ecological studies of parasite response to environmental shifts are necessarily limited to short time scales, the fossil record can potentially provide a quantitative archive of long-term ecological responses to past climate transitions. Here, we document multi-centennial scale changes in prevalence of trematodes infesting the bivalve host Abra segmentum through multiple sea-level fluctuations preserved in brackish Holocene deposits of the Po Plain, Italy. Prevalence values were significantly elevated (p < 0.01) in samples associated with flooding surfaces, yet the temporal trends of parasite prevalence and host shell length, cannot be explained by Waltherian facies change, host availability, salinity, diversity, turnover, or community structure. The observed surges in parasite prevalence during past flooding events indicate that the ongoing global warming and sea-level rise will lead to significant intensification of trematode parasitism, suppressed fecundity of common benthic organisms, and negative impacts on marine ecosystems, ecosystem services, and, eventually, to human well-being.

Detecting, sourcing, and age-dating dredged sediments on the open shelf, southern California, using dead mollusk shells

Molluscan shell debris is an under-exploited means of detecting, sourcing, and age-dating dredged sediments in open-shelf settings. Backscatter features on the Southern California shelf are suggestive of dredged sediment hauled from San Diego Bay but deposited significantly inshore of the EPA-designated ocean disposal site. We find that 36% of all identifiable bivalve shells >2mm (44% of shells >4mm) in sediment samples from this 'short dump' area are from species known to live exclusively in the Bay; such shells are absent at reference sites of comparable water depth, indicating that their presence in the short-dump area signals non-compliant disposal rather than natural offshore transport or sea level rise. These sediments lack the shells of species that invaded California bays in the 1970s, suggesting that disposal preceded federal regulations. This inexpensive, low-tech method, with its protocol for rejecting alternative hypotheses, will be easy to adapt in other settings.

On the probability of dinosaur fleas

Recently, a set of publications described flea fossils from Jurassic and Early Cretaceous geological strata in northeastern China, which were suggested to have parasitized feathered dinosaurs, pterosaurs, and early birds or mammals. In support of these fossils being fleas, a recent publication in BMC Evolutionary Biology described the extended abdomen of a female fossil specimen as due to blood feeding.We here comment on these findings, and conclude that the current interpretation of the evolutionary trajectory and ecology of these putative dinosaur fleas is based on appeal to probability, rather than evidence. Hence, their taxonomic positioning as fleas, or stem fleas, as well as their ecological classification as ectoparasites and blood feeders is not supported by currently available data.

Differential responses of marine communities to natural and anthropogenic changes

Responses of ecosystems to environmental changes vary greatly across habitats, organisms and observational scales. The Quaternary fossil record of the Po Basin demonstrates that marine communities of the northern Adriatic re-emerged unchanged following the most recent glaciation, which lasted approximately 100,000 years. The Late Pleistocene and Holocene interglacial ecosystems were both dominated by the same species, species turnover rates approximated predictions of resampling models of a homogeneous system, and comparable bathymetric gradients in species composition, sample-level diversity, dominance and specimen abundance were observed in both time intervals. The interglacial Adriatic ecosystems appear to have been impervious to natural climate change either owing to their persistence during those long-term perturbations or their resilient recovery during interglacial phases of climate oscillations. By contrast, present-day communities of the northern Adriatic differ notably from their Holocene counterparts. The recent ecosystem shift stands in contrast to the long-term endurance of interglacial communities in face of climate-driven environmental changes.

Combining marine macroecology and palaeoecology in understanding biodiversity: microfossils as a model

There is growing interest in the integration of macroecology and palaeoecology towards a better understanding of past, present, and anticipated future biodiversity dynamics. However, the empirical basis for this integration has thus far been limited. Here we review prospects for a macroecology-palaeoecology integration in biodiversity analyses with a focus on marine microfossils [i.e. small (or small parts of) organisms with high fossilization potential, such as foraminifera, ostracodes, diatoms, radiolaria, coccolithophores, dinoflagellates, and ichthyoliths]. Marine microfossils represent a useful model system for such integrative research because of their high abundance, large spatiotemporal coverage, and good taxonomic and temporal resolution. The microfossil record allows for quantitative cross-scale research designs, which help in answering fundamental questions about marine biodiversity, including the causes behind similarities in patterns of latitudinal and longitudinal variation across taxa, the degree of constancy of observed gradients over time, and the relative importance of hypothesized drivers that may explain past or present biodiversity patterns. The inclusion of a deep-time perspective based on high-resolution microfossil records may be an important step for the further maturation of macroecology. An improved integration of macroecology and palaeoecology would aid in our understanding of the balance of ecological and evolutionary mechanisms that have shaped the biosphere we inhabit today and affect how it may change in the future.

Energy flow and functional compensation in Great Basin small mammals under natural and anthropogenic environmental change

Research on the ecological impacts of environmental change has primarily focused at the species level, leaving the responses of ecosystem-level properties like energy flow poorly understood. This is especially so over millennial timescales inaccessible to direct observation. Here we examine how energy flow within a Great Basin small mammal community responded to climate-driven environmental change during the past 12,800 y, and use this baseline to evaluate responses observed during the past century. Our analyses reveal marked stability in energy flow during rapid climatic warming at the terminal Pleistocene despite dramatic turnover in the distribution of mammalian body sizes and habitat-associated functional groups. Functional group turnover was strongly correlated with climate-driven changes in regional vegetation, with climate and vegetation change preceding energetic shifts in the small mammal community. In contrast, the past century has witnessed a substantial reduction in energy flow caused by an increase in energetic dominance of small-bodied species with an affinity for closed grass habitats. This suggests that modern changes in land cover caused by anthropogenic activities--particularly the spread of nonnative annual grasslands--has led to a breakdown in the compensatory dynamics of energy flow. Human activities are thus modifying the small mammal community in ways that differ from climate-driven expectations, resulting in an energetically novel ecosystem. Our study illustrates the need to integrate across ecological and temporal scales to provide robust insights for long-term conservation and management.

Biology in the Anthropocene: Challenges and insights from young fossil records

With overwhelming evidence of change in habitats, biologists today must assume that few, if any, study areas are natural and that biological variability is superimposed on trends rather than stationary means. Paleobiological data from the youngest sedimentary record, including death assemblages actively accumulating on modern land surfaces and seabeds, provide unique information on the status of present-day species, communities, and biomes over the last few decades to millennia and on their responses to natural and anthropogenic environmental change. Key advances have established the accuracy and resolving power of paleobiological information derived from naturally preserved remains and of proxy evidence for environmental conditions and sample age so that fossil data can both implicate and exonerate human stressors as the drivers of biotic change and permit the effects of multiple stressors to be disentangled. Legacy effects from Industrial and even pre-Industrial anthropogenic extirpations, introductions, (de)nutrification, and habitat conversion commonly emerge as the primary factors underlying the present-day status of populations and communities; within the last 2 million years, climate change has rarely been sufficient to drive major extinction pulses absent other human pressures, which are now manifold. Young fossil records also provide rigorous access to the baseline composition and dynamics of modern-day biota under pre-Industrial conditions, where insights include the millennial-scale persistence of community structures, the dominant role of physical environmental conditions rather than biotic interactions in determining community composition and disassembly, and the existence of naturally alternating states.

Utility of marine benthic associations as a multivariate proxy of paleobathymetry: a direct test from recent coastal ecosystems of North Carolina

Benthic marine fossil associations have been used in paleontological studies as multivariate environmental proxies, with particular focus on their utility as water depth estimators. To test this approach directly, we evaluated modern marine invertebrate communities along an onshore-offshore gradient to determine the relationship between community composition and bathymetry, compare the performance of various ordination techniques, and assess whether restricting community datasets to preservable taxa (a proxy for paleontological data) and finer spatial scales diminishes the applicability of multivariate community data as an environmental proxy. Different indirect (unconstrained) ordination techniques (PCoA, CA, DCA, and NMDS) yielded consistent outcomes: locality Axis 1 scores correlated with actual locality depths, and taxon Axis 1 scores correlated with actual preferred taxon depths, indicating that changes in faunal associations primarily reflect bathymetry, or its environmental correlatives. For datasets restricted to taxa with preservable hard parts, heavily biomineralized mollusks, open ocean habitats, and a single onshore-offshore gradient, the significant correlation between water depth and Axis 1 was still observed. However, for these restricted datasets, the correlation between Axis 1 and bathymetry was reduced and, in most cases, notably weaker than estimates produced by subsampling models. Consistent with multiple paleontological studies, the direct tests carried out here for a modern habitat using known bathymetry suggests that multivariate proxies derived from marine benthic associations may serve as a viable proxy of water depth. The general applicability of multivariate paleocommunity data as an indirect proxy of bathymetry is dependent on habitat type, intrinsic ecological characteristics of dominant faunas, taxonomic scope, and spatial and temporal scales of analysis, highlighting the need for continued testing in present-day depositional settings.