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Sun B, Zhou R, Zhu G, Xie X, Chai A, Li L, Fan T, Li B, Shi Y. Transcriptome Analysis Reveals the Involvement of Mitophagy and Peroxisome in the Resistance to QoIs in Corynespora cassiicola. Microorganisms 2023; 11:2849. [PMID: 38137993 PMCID: PMC10745780 DOI: 10.3390/microorganisms11122849] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/20/2023] [Revised: 11/08/2023] [Accepted: 11/21/2023] [Indexed: 12/24/2023] Open
Abstract
Quinone outside inhibitor fungicides (QoIs) are crucial fungicides for controlling plant diseases, but resistance, mainly caused by G143A, has been widely reported with the high and widespread use of QoIs. However, two phenotypes of Corynespora casiicola (RI and RII) with the same G143A showed significantly different resistance to QoIs in our previous study, which did not match the reported mechanisms. Therefore, transcriptome analysis of RI and RII strains after trifloxystrobin treatment was used to explore the new resistance mechanism in this study. The results show that 332 differentially expressed genes (DEGs) were significantly up-regulated and 448 DEGs were significantly down-regulated. The results of GO and KEGG enrichment showed that DEGs were most enriched in ribosomes, while also having enrichment in peroxide, endocytosis, the lysosome, autophagy, and mitophagy. In particular, mitophagy and peroxisome have been reported in medicine as the main mechanisms of reactive oxygen species (ROS) scavenging, while the lysosome and endocytosis are an important organelle and physiological process, respectively, that assist mitophagy. The oxidative stress experiments showed that the oxidative stress resistance of the RII strains was significantly higher than that of the RI strains: specifically, it was more than 1.8-fold higher at a concentration of 0.12% H2O2. This indicates that there is indeed a significant difference in the scavenging capacity of ROS between the two phenotypic strains. Therefore, we suggest that QoIs' action caused a high production of ROS, and that scavenging mechanisms such as mitophagy and peroxisomes functioned in RII strains to prevent oxidative stress, whereas RI strains were less capable of resisting oxidative stress, resulting in different resistance to QoIs. In this study, it was first revealed that mitophagy and peroxisome mechanisms available for ROS scavenging are involved in the resistance of pathogens to fungicides.
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Affiliation(s)
| | | | | | | | | | | | | | - Baoju Li
- State Key Laboratory of Vegetable Biobreeding, Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, Beijing 100081, China; (B.S.); (R.Z.)
| | - Yanxia Shi
- State Key Laboratory of Vegetable Biobreeding, Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, Beijing 100081, China; (B.S.); (R.Z.)
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Vishakha K, Das S, Ganguli A. The Facile Synthesis of Eco-Friendly Zinc Magnesium Bimetal Nanoparticles and its Application in the Eradication of Xanthomonas oryzae pv. oryzae that Causes Leaf Blight Disease of Rice. Curr Microbiol 2023; 80:340. [PMID: 37712946 DOI: 10.1007/s00284-023-03455-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/24/2023] [Accepted: 08/22/2023] [Indexed: 09/16/2023]
Abstract
In this research work, we formulated and successfully assessed the antibacterial capability of zinc magnesium bimetal nanoparticles (ZnMgNPs) against Xanthomonas oryzae pv. oryzae (Xoo), the pathogenic microorganism responsible for causing the destructive leaf blight disease in rice. Successful preparation of ZnMgNPs were determined by UV-vis spectroscopy, EDX (Energy dispersive X-ray), FTIR (Fourier transform infrared) and SEM (Scanning Electron Microscopy). ZnMgNPs had antibacterial efficacy towards Xoo at MIC (minimum inhibitory concentration) 50 µg/ml. ZnMgNPs impeded the formation of biofilm of Xoo by drastically reducing the amount of EPS (extracellular polymeric substances) production and number of sessile cells. The ZnMgNPs also reduced several pathogenic traits of Xoo like motility, xanthomonadin and exoenzymes production. ZnMgNPs target cell membrane of Xoo and also induced oxidative damage as mechanisms of its antibacterial activity. As revealed by an ex-vivo study, ZnMgNPs diminished BLB (bacterial leaf blight) disease symptoms in rice leaves, ZnMgNPs had no effect on rice seed germination, and that following foliar application, the length and biomass of roots and shoots of rice seedling were unaffected, low cytotoxic to A549 cell line showing that ZnMgNPs are non-toxic. However, with ZnMgNPs treatment, the chlorophyll content index (CCI) increased significantly, indicating a good impact on rice physiology. All of these findings suggest that ZnMgNPs could be applied in agriculture to combat the Xoo-caused BLB disease.
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Affiliation(s)
- Kumari Vishakha
- Department of Microbiology, Techno India University, West Bengal EM-4 Sector-V, Saltlake City, Kolkata, West Bengal, 700091, India
| | - Shatabdi Das
- Department of Microbiology, Techno India University, West Bengal EM-4 Sector-V, Saltlake City, Kolkata, West Bengal, 700091, India
| | - Arnab Ganguli
- Department of Microbiology, Techno India University, West Bengal EM-4 Sector-V, Saltlake City, Kolkata, West Bengal, 700091, India.
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Hamza A, Farooq MO, Razaq M, Shah FM. Organic farming of maize crop enhances species evenness and diversity of hexapod predators. BULLETIN OF ENTOMOLOGICAL RESEARCH 2023; 113:565-573. [PMID: 37434448 DOI: 10.1017/s000748532300024x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 07/13/2023]
Abstract
Arthropod species diversity enhances ecosystem productivity and sustainability by increasing pollination and biological control services. Although, it is declining rapidly due to conventional agricultural intensification, organic agriculture with reduced reliance on agronomic inputs can regenerate ecosystems' resilience and restore them. Here, we report whether hexapod communities differ on both types of farming systems in small-scale field plot experiments, wherein Maize variety AG-589 was grown organically and conventionally in the 2020 and 2021 seasons. Livestock manure was applied in organic fields, whereas nitrogen and phosphorous were used as synthetic fertilizers in conventional fields. Hexapods were sampled three weeks after sowing once a week from the middle rows of subplots from both organically and conventionally grown maize. Twelve species of herbivores and four species of predators were recorded. Hexapod abundance overall and that of herbivores only was higher in conventionally cultivated maize, while predator abundance was higher in organic maize. Herbivores species diversity and evenness were significantly higher in conventional maize. Predator species diversity and evenness were significantly higher in organic maize fields. We noted predator abundance, diversity, and evenness as strong predictors to lower herbivore populations. These findings suggest that organic farming conserves natural enemies' biodiversity and regulates herbivores with increased provision of suitable habitats and prey resources for natural enemies, leading to enhanced relative abundance in their specialized niches. Thus, organic agriculture can potentially mediate better ecosystem services.
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Affiliation(s)
- Amir Hamza
- Department of Entomology, Faculty of Agricultural Sciences and Technology (FAS&T), Bahauddin Zakariya University, 66000 Multan, Pakistan
| | - Muhammad Omer Farooq
- Department of Entomology, Faculty of Agricultural Sciences and Technology (FAS&T), Bahauddin Zakariya University, 66000 Multan, Pakistan
| | - Muhammad Razaq
- Department of Entomology, Faculty of Agricultural Sciences and Technology (FAS&T), Bahauddin Zakariya University, 66000 Multan, Pakistan
| | - Farhan Mahmood Shah
- Department of Entomology, Faculty of Agricultural Sciences and Technology (FAS&T), Bahauddin Zakariya University, 66000 Multan, Pakistan
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Gao Q, Zhang Y, Gao C, Li H, Cheng Y, Qian X, Zhang L, Liu J, Ogunyemi SO, Guan J. The Microbial Diversity in Relation to Postharvest Quality and Decay: Organic vs. Conventional Pear Fruit. Foods 2023; 12:foods12101980. [PMID: 37238797 DOI: 10.3390/foods12101980] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/21/2023] [Revised: 04/24/2023] [Accepted: 05/11/2023] [Indexed: 05/28/2023] Open
Abstract
(1) Background: Organic food produced in environmentally friendly farming systems has become increasingly popular. (2) Methods: We used a DNA metabarcoding approach to investigate the differences in the microbial community between organic and conventional 'Huangguan' pear fruit; and (3) Results: Compared to a conventional orchard, the fruit firmness in the organic orchard had significantly lowered after 30 days of shelf-life storage at 25 °C, and the soluble solids content (SSC), titratable acid (TA), and decay index were higher. There were differences in the microbial diversity between organic and conventional orchards pears. After 30 days of storage, Fusarium and Starmerella became the main epiphytic fungi in organic fruits, while Meyerozyma was dominant in conventional fruits. Gluconobacter, Acetobacter, and Komagataeibacter were dominant epiphytic bacteria on pears from both organic and conventional orchards after a 30-day storage period. Bacteroides, Muribaculaceae, and Nesterenkonia were the main endophytic bacteria throughout storage. There was a negative correlation between fruit firmness and decay index. Moreover, the abundance of Acetobacter and Starmerella were positively correlated with fruit firmness, while Muribaculaceae was negatively correlated, implying that these three microorganisms may be associated with the postharvest decay of organic fruit; (4) Conclusions: The difference in postharvest quality and decay in organic and conventional fruits could potentially be attributed to the variation in the microbial community during storage.
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Affiliation(s)
- Qi Gao
- Institute of Biotechnology and Food Science, Hebei Academy of Agricultural and Forestry Sciences, Shijiazhuang 050051, China
- Key Laboratory of Plant Genetic Engineering Center of Hebei Province, Shijiazhuang 050051, China
| | - Yang Zhang
- Institute of Biotechnology and Food Science, Hebei Academy of Agricultural and Forestry Sciences, Shijiazhuang 050051, China
- Key Laboratory of Plant Genetic Engineering Center of Hebei Province, Shijiazhuang 050051, China
| | - Congcong Gao
- Institute of Biotechnology and Food Science, Hebei Academy of Agricultural and Forestry Sciences, Shijiazhuang 050051, China
- Key Laboratory of Plant Genetic Engineering Center of Hebei Province, Shijiazhuang 050051, China
| | - Huimin Li
- Institute of Biotechnology and Food Science, Hebei Academy of Agricultural and Forestry Sciences, Shijiazhuang 050051, China
- Key Laboratory of Plant Genetic Engineering Center of Hebei Province, Shijiazhuang 050051, China
- School of Landscape and Ecological Engineering, Hebei Engineering University, Handan 056021, China
| | - Yudou Cheng
- Institute of Biotechnology and Food Science, Hebei Academy of Agricultural and Forestry Sciences, Shijiazhuang 050051, China
- Key Laboratory of Plant Genetic Engineering Center of Hebei Province, Shijiazhuang 050051, China
| | - Xun Qian
- Institute of Biotechnology and Food Science, Hebei Academy of Agricultural and Forestry Sciences, Shijiazhuang 050051, China
- Key Laboratory of Plant Genetic Engineering Center of Hebei Province, Shijiazhuang 050051, China
| | - Lishu Zhang
- Cangzhou Academy of Agricultural and Forestry Sciences, Cangzhou 061001, China
| | - Jinyu Liu
- Cangzhou Academy of Agricultural and Forestry Sciences, Cangzhou 061001, China
| | - Solabomi Olaitan Ogunyemi
- State Key Laboratory of Rice Biology, Ministry of Agriculture Key Lab of Molecular Biology of Crop Pathogens and Insects, Institute of Biotechnology, Zhejiang University, Hangzhou 310013, China
| | - Junfeng Guan
- Institute of Biotechnology and Food Science, Hebei Academy of Agricultural and Forestry Sciences, Shijiazhuang 050051, China
- Key Laboratory of Plant Genetic Engineering Center of Hebei Province, Shijiazhuang 050051, China
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Ayilara MS, Adeleke BS, Babalola OO. Bioprospecting and Challenges of Plant Microbiome Research for Sustainable Agriculture, a Review on Soybean Endophytic Bacteria. MICROBIAL ECOLOGY 2023; 85:1113-1135. [PMID: 36319743 PMCID: PMC10156819 DOI: 10.1007/s00248-022-02136-z] [Citation(s) in RCA: 6] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/05/2022] [Accepted: 10/24/2022] [Indexed: 05/04/2023]
Abstract
This review evaluates oilseed crop soybean endophytic bacteria, their prospects, and challenges for sustainable agriculture. Soybean is one of the most important oilseed crops with about 20-25% protein content and 20% edible oil production. The ability of soybean root-associated microbes to restore soil nutrients enhances crop yield. Naturally, the soybean root endosphere harbors root nodule bacteria, and endophytic bacteria, which help increase the nitrogen pool and reclamation of another nutrient loss in the soil for plant nutrition. Endophytic bacteria can sustain plant growth and health by exhibiting antibiosis against phytopathogens, production of enzymes, phytohormone biosynthesis, organic acids, and secondary metabolite secretions. Considerable effort in the agricultural industry is focused on multifunctional concepts and bioprospecting on the use of bioinput from endophytic microbes to ensure a stable ecosystem. Bioprospecting in the case of this review is a systemic overview of the biorational approach to harness beneficial plant-associated microbes to ensure food security in the future. Progress in this endeavor is limited by available techniques. The use of molecular techniques in unraveling the functions of soybean endophytic bacteria can explore their use in integrated organic farming. Our review brings to light the endophytic microbial dynamics of soybeans and current status of plant microbiome research for sustainable agriculture.
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Affiliation(s)
- Modupe Stella Ayilara
- Food Security and Safety Focus Area, Faculty of Natural and Agricultural Sciences, North-West University, Private Bag X2046, Mmabatho, 2735, South Africa
| | - Bartholomew Saanu Adeleke
- Department of Biological Sciences, Microbiology Unit, Faculty of Science, Olusegun Agagu University of Science and Technology, PMB 353, Okitipupa, Nigeria
| | - Olubukola Oluranti Babalola
- Food Security and Safety Focus Area, Faculty of Natural and Agricultural Sciences, North-West University, Private Bag X2046, Mmabatho, 2735, South Africa.
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Berihu M, Somera TS, Malik A, Medina S, Piombo E, Tal O, Cohen M, Ginatt A, Ofek-Lalzar M, Doron-Faigenboim A, Mazzola M, Freilich S. A framework for the targeted recruitment of crop-beneficial soil taxa based on network analysis of metagenomics data. MICROBIOME 2023; 11:8. [PMID: 36635724 PMCID: PMC9835355 DOI: 10.1186/s40168-022-01438-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 04/14/2022] [Accepted: 11/28/2022] [Indexed: 06/17/2023]
Abstract
BACKGROUND The design of ecologically sustainable and plant-beneficial soil systems is a key goal in actively manipulating root-associated microbiomes. Community engineering efforts commonly seek to harness the potential of the indigenous microbiome through substrate-mediated recruitment of beneficial members. In most sustainable practices, microbial recruitment mechanisms rely on the application of complex organic mixtures where the resources/metabolites that act as direct stimulants of beneficial groups are not characterized. Outcomes of such indirect amendments are unpredictable regarding engineering the microbiome and achieving a plant-beneficial environment. RESULTS This study applied network analysis of metagenomics data to explore amendment-derived transformations in the soil microbiome, which lead to the suppression of pathogens affecting apple root systems. Shotgun metagenomic analysis was conducted with data from 'sick' vs 'healthy/recovered' rhizosphere soil microbiomes. The data was then converted into community-level metabolic networks. Simulations examined the functional contribution of treatment-associated taxonomic groups and linked them with specific amendment-induced metabolites. This analysis enabled the selection of specific metabolites that were predicted to amplify or diminish the abundance of targeted microbes functional in the healthy soil system. Many of these predictions were corroborated by experimental evidence from the literature. The potential of two of these metabolites (dopamine and vitamin B12) to either stimulate or suppress targeted microbial groups was evaluated in a follow-up set of soil microcosm experiments. The results corroborated the stimulant's potential (but not the suppressor) to act as a modulator of plant beneficial bacteria, paving the way for future development of knowledge-based (rather than trial and error) metabolic-defined amendments. Our pipeline for generating predictions for the selective targeting of microbial groups based on processing assembled and annotated metagenomics data is available at https://github.com/ot483/NetCom2 . CONCLUSIONS This research demonstrates how genomic-based algorithms can be used to formulate testable hypotheses for strategically engineering the rhizosphere microbiome by identifying specific compounds, which may act as selective modulators of microbial communities. Applying this framework to reduce unpredictable elements in amendment-based solutions promotes the development of ecologically-sound methods for re-establishing a functional microbiome in agro and other ecosystems. Video Abstract.
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Affiliation(s)
- Maria Berihu
- Agricultural Research Organization (ARO), Institute of Plant Sciences, Rishon LeZion/Ramat Yishay, Israel
| | - Tracey S. Somera
- United States Department of Agriculture-Agricultural Research Service Tree Fruit Research Lab, 1104 N. Western Ave, Wenatchee, WA 98801 USA
| | | | - Shlomit Medina
- Agricultural Research Organization (ARO), Institute of Plant Sciences, Rishon LeZion/Ramat Yishay, Israel
| | - Edoardo Piombo
- Department of Agricultural, Forest and Food Sciences (DISAFA), University of Torino, Grugliasco, Italy
- Department of Forest Mycology and Plant Pathology, Uppsala Biocenter, Swedish University of Agricultural Sciences, P.O. Box 7026, 75007 Uppsala, Sweden
| | - Ofir Tal
- Agricultural Research Organization (ARO), Institute of Plant Sciences, Rishon LeZion/Ramat Yishay, Israel
- Kinneret Limnological Laboratory (KLL) Israel Oceanographic and Limnological Research (IOLR), P.O. Box 447, 49500 Migdal, Israel
| | - Matan Cohen
- Agricultural Research Organization (ARO), Institute of Plant Sciences, Rishon LeZion/Ramat Yishay, Israel
| | - Alon Ginatt
- Agricultural Research Organization (ARO), Institute of Plant Sciences, Rishon LeZion/Ramat Yishay, Israel
| | | | - Adi Doron-Faigenboim
- Agricultural Research Organization (ARO), Institute of Plant Sciences, Rishon LeZion/Ramat Yishay, Israel
| | - Mark Mazzola
- United States Department of Agriculture-Agricultural Research Service Tree Fruit Research Lab, 1104 N. Western Ave, Wenatchee, WA 98801 USA
- Department of Plant Pathology, Stellenbosch University, Private Bag X1, Matieland, 7600 South Africa
| | - Shiri Freilich
- Agricultural Research Organization (ARO), Institute of Plant Sciences, Rishon LeZion/Ramat Yishay, Israel
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Zhu X, Ma X, Gao C, Mu Y, Pei Y, Liu C, Zou A, Sun X. Fabrication of CuO nanoparticles composite ε-polylysine-alginate nanogel for high-efficiency management of Alternaria alternate. Int J Biol Macromol 2022; 223:1208-1222. [PMID: 36375663 DOI: 10.1016/j.ijbiomac.2022.11.072] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/21/2022] [Revised: 11/07/2022] [Accepted: 11/08/2022] [Indexed: 11/13/2022]
Abstract
Although ε-poly-l-lysine (ε-PL) has a good potential as a green fungicide, high concentration is usually required during its controlling of plant disease. On the other hand, same problems also appeared in the study of CuONP based nano pesticides. In this manuscript, a new composite alginate nanogel (ALGNP) that containing CuONP and ε-PL was fabricated via in situ reduction of CuONP in nanogel and ε-PL surface coating. Based on the chelation of amide bond of ε-PL and Cu2+ released by CuONP, the synergy effect between Cu2+ and ε-PL layer of the nanogel make the nanogel (CuONP@ALGNP@PL) performed high anti-fungal activity under low Cu2+ and ε-PL concentration (Cu concentration was 40.09 μg/mL, ε-PL concentration was 11.90 μg/mL). Study showed that the nanogel could more significantly destroy the fungal cell membrane than CuONP@ALGNP and ALGNP@PL, also better than commercial fungicide CuCaSO4 (Cu concentration was 120 μg/mL). Furthermore, CuONP@ALGNP@PL could seriously affect the spore production, spore germination rate and bud tube elongation length of Alternaria alternate. Moreover, CuONP@ALGNP@PL also inhibit Botrytis cinerea, Phytophthora, Thanatephorus cucumeris and Fusarium graminearum. These results showed that composite of CuONP and ε-PL based on nanogel can decrease the raw materials application amount, and achieve a high disease controlling ability, which provides a new perspective for preventing fungal diseases.
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Affiliation(s)
- Xin Zhu
- College of Plant Protection, Southwest University, Chongqing 400715, China
| | - Xiaozhou Ma
- College of Plant Protection, Southwest University, Chongqing 400715, China; Chongqing Key Laboratory of Soft-Matter Material Chemistry and Function Manufacturing, Southwest University, Chongqing 400715, China
| | - Changdan Gao
- College of Plant Protection, Southwest University, Chongqing 400715, China
| | - Yanling Mu
- College of Plant Protection, Southwest University, Chongqing 400715, China
| | - Yuehong Pei
- College of Plant Protection, Southwest University, Chongqing 400715, China
| | - Changyun Liu
- College of Plant Protection, Southwest University, Chongqing 400715, China
| | - Aihong Zou
- College of Plant Protection, Southwest University, Chongqing 400715, China
| | - Xianchao Sun
- College of Plant Protection, Southwest University, Chongqing 400715, China; Chongqing Key Laboratory of Soft-Matter Material Chemistry and Function Manufacturing, Southwest University, Chongqing 400715, China.
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Duarte JA, Alves-Ribeiro G, Machado FP, Folly D, Peñaloza E, Garret R, Santos MG, Ventura JA, Wermelinger GF, Robbs BK, Rocha L, Fiaux SB. Glimpsing the chemical composition and the potential of Myrtaceae plant extracts against the food spoilage fungus Thielaviopsis ethacetica. Food Control 2022. [DOI: 10.1016/j.foodcont.2022.109501] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
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Scale Difference from the Impact of Disease Control on Pig Production Efficiency. Animals (Basel) 2022; 12:ani12192647. [PMID: 36230387 PMCID: PMC9559572 DOI: 10.3390/ani12192647] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/31/2022] [Revised: 09/25/2022] [Accepted: 09/27/2022] [Indexed: 11/09/2022] Open
Abstract
Simple Summary This paper uses the data of fixed observation points in the country’s rural areas, the Data Envelopment Analysis model is used to calculate the production efficiency of pig farmers, which shows the efficiency level of pig breeding in the country. Then, the Tobit model is used to analyze that epidemic prevention and control has a positive effect on production efficiency. Finally, the threshold regression model was used to analyze the results: the effect of disease control on production efficiency was different under different breeding scales. When the breeding scale was less than 6.0002, the disease control had a negative impact on the production efficiency. When the breeding scale was greater than 12.9994, the disease control had a positive impact on the production efficiency. The research results of this paper not only help farmers to correctly understand the relationship between epidemic prevention and production efficiency, guide farmers to expand their breeding scale, and actively participate in epidemic prevention and control, but also provide a reference for the government to formulate policies according to different scales to guide farmers to carry out epidemic prevention and control. Abstract Epidemic disease prevention plays a critical role in ensuring the healthy development of livestock farming, and the subjective willingness of breeders can be affected by the cost of epidemic disease prevention. To correct the misconception that farmers regard the cost of disease control as an ineffective cost, and to promote the healthy development of the pig breeding industry, our study employed the data envelopment analysis super-efficiency model and panel threshold regression model to evaluate the combination of the cost of epidemic disease prevention and swine productivity using data collected from 1998–2018 across 30 provinces in China. The following results were obtained. (1) The cost of epidemic disease prevention generated a non-linear on swine productivity when the swine farming scale was limited; (2) When the number of animals at the beginning of the year was less than 6.0002, swine productivity was impacted negatively; (3) When the number of animals at the beginning of the year ranged between 6.0002 and 12.9994, the impact was insignificant; (4) A strong correlation was observed between the expenses of epidemic disease prevention and animal productivity when the number of animals at the beginning of the year exceeded 12.9994. These results indicate that publicity should be enhanced to elucidate the combination of epidemic disease prevention and swine productivity among breeders. In addition, the government should introduce relevant policies to encourage the development of large-scale pig farming, such as subsidies for the construction of large-scale farms and insurance.
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Dynamic Fluctuation and Niche Differentiation of Fungal Pathogens Infecting Bell Pepper Plants. Appl Environ Microbiol 2022; 88:e0100322. [PMID: 36036572 PMCID: PMC9499033 DOI: 10.1128/aem.01003-22] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022] Open
Abstract
The plant microbiome is shaped by plant development and microbial interaction. Fungal pathogens infecting bell pepper plants may fluctuate across the growing seasons. Dynamic fluctuation of the microbiome and fungal pathogens in bell pepper plants is poorly understood, and the origin of fungal pathogens causing fruit rot and leaf wilt has been barely investigated. In this study, we used amplicon sequencing (i.e., 16S rRNA and internal transcribed spacer [ITS] sequencing) to explore the compositional variations of the microbiome in bell pepper plants and studied the fluctuation of fungal pathogens across the growing seasons. Co-occurrence network analysis was applied to track the origin and dissemination route of fungal pathogens that infected bell pepper plants. ITS and 16S rRNA sequencing analyses demonstrated that fungal pathogens infecting fruits and leaves probably belonged to the Penicillium, Cladosporium, Fusarium, and unclassified_Sclerotiniaceae genera rather than one specific genus. The dominant fungal pathogens were different, along with the development of bell pepper plants. Both plant development and fungal pathogens shaped microbial communities in bell pepper plants across the growing seasons. Fungal pathogens decreased species richness and diversity of fungal communities in fungus-infected fruit and leaf tissues but not the uninfected stem tissues. Bacterial metabolic functions of xenobiotics increased in fungus-infected leaves at a mature developmental stage. Competitive interaction was present between fungal and bacterial communities in leaves. Co-occurrence network analysis revealed that the origins of fungal pathogens included the greenhouse, packing house, and storage room. Niche differentiation of microbes was discovered among these locations. IMPORTANCE Bell peppers are widely consumed worldwide. Fungal pathogen infections of bell peppers lead to enormous economic loss. To control fungal pathogens and increase economic benefit, it is essential to investigate the shifting patterns of the microbiome and fungal pathogens in bell pepper plants across the growing seasons. In this study, bell pepper plant diseases observed in fruits and leaves were caused by different fungal pathogens. Fungal pathogens originated from the greenhouse, packing house, and storage room, and niche differentiation existed among microbes. This study improves the understanding of dynamic fluctuation and source of fungal pathogens infecting bell pepper plants in the farming system. It also facilitates precise management of fungal pathogens in the greenhouse.
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Chiu MC, Chen CL, Chen CW, Lin HJ. Weather fluctuation can override the effects of integrated nutrient management on fungal disease incidence in the rice fields in Taiwan. Sci Rep 2022; 12:4273. [PMID: 35277560 PMCID: PMC8917239 DOI: 10.1038/s41598-022-08139-7] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/26/2021] [Accepted: 03/03/2022] [Indexed: 11/26/2022] Open
Abstract
Both weather fluctuation and farming system influence the epidemiology of crop diseases. However, short-term experiments are difficult to mechanistically extrapolate into long-term ecological responses. Using a mechanistic model with Bayesian inference, long-term data spanning 10 years were used to construct relationships among weather fluctuation (temperature, relative humidity, wind, and rainfall), farming system (conventional and low-external-input farming), and crop disease in experimental rice fields in Taiwan. Conventional and low-external-input farming had similar influences on the disease incidence of rice blast. Temperature had a positive influence on the disease incidence only under high relative humidity. Rainfall positively affected the disease incidence until an optimum level of rainfall. Low-external-input farming, with a lower application of fertilizers and other sustainable nutrient management, achieved similar effects on the disease incidence to those achieved by conventional farming. This suggests that weather fluctuation may override the effect of the farming systems on fungal disease incidence in rice fields.
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Affiliation(s)
- Ming-Chih Chiu
- Department of Life Sciences and Innovation and Development Center of Sustainable Agriculture, National Chung Hsing University, Taichung City, 40227, Taiwan.,Department of Entomology, National Chung Hsing University, Taichung City, 40227, Taiwan
| | - Chi-Ling Chen
- Taiwan Agricultural Research Institute, Council of Agriculture, Executive Yuan, Taichung City, 41362, Taiwan.
| | - Chun-Wei Chen
- Taiwan Agricultural Research Institute, Council of Agriculture, Executive Yuan, Taichung City, 41362, Taiwan
| | - Hsing-Juh Lin
- Department of Life Sciences and Innovation and Development Center of Sustainable Agriculture, National Chung Hsing University, Taichung City, 40227, Taiwan.
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Semenov MV, Krasnov GS, Semenov VM, van Bruggen A. Mineral and Organic Fertilizers Distinctly Affect Fungal Communities in the Crop Rhizosphere. J Fungi (Basel) 2022; 8:jof8030251. [PMID: 35330253 PMCID: PMC8949291 DOI: 10.3390/jof8030251] [Citation(s) in RCA: 14] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/13/2022] [Revised: 02/26/2022] [Accepted: 02/27/2022] [Indexed: 01/04/2023] Open
Abstract
Fungi represent a diverse group of organisms that play an essential role in maintaining soil health and ecosystem functioning. Plant root exudates form nutrient-rich niches that harbor specific fungal communities, or so-called rhizosphere mycobiomes. The long-term application of fertilizers supplies the soil with nutrients that may override the plant-related effects on rhizosphere fungal communities. Here, we assessed the effect of contrasting fertilization regimes on the composition, diversity, and abundance of bulk soil and rhizosphere mycobiomes of potato, white mustard, and maize under NPK (mineral fertilizers) or fresh cattle manure (organic fertilizers). Mineral and organic fertilizers led to distinct fungal communities in the rhizospheres of all studied crops, and the plant-related effects on the mycobiome were overridden by the effect of fertilization. The abundances of Ascomycota and Olpidiomycota were higher under manure, while the abundances of Basidiomycota and Monoblepharomycota increased under NPK. Manure input strongly increased fungal abundance but decreased fungal diversity and the total number of species. NPK had a slight effect on fungal diversity, but significantly increased the relative abundances of fungal phytopathogens, such as Alternaria and Fusarium. Our study shows that that potential plant species effects on the abundance and diversity of the rhizosphere mycobiomes are governed by long-term fertilization. Fertilization management could therefore be used to manipulate rhizosphere fungal communities and soilborne pathogen suppressiveness.
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Affiliation(s)
- Mikhail V. Semenov
- Department of Soil Biology and Biochemistry, Dokuchaev Soil Science Institute, 119017 Moscow, Russia
- Correspondence:
| | - George S. Krasnov
- Laboratory of Postgenomic Research, Engelhardt Institute of Molecular Biology Russian Academy of Sciences, 119991 Moscow, Russia;
| | - Vyacheslav M. Semenov
- Institute of Physicochemical and Biological Problems in Soil Science of RAS, 142290 Pushchino, Russia;
| | - Ariena van Bruggen
- Department of Plant Pathology and Emerging Pathogens Institute, University of Florida, Gainesville, FL 32611-0680, USA;
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13
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Major Biological Control Strategies for Plant Pathogens. Pathogens 2022; 11:pathogens11020273. [PMID: 35215215 PMCID: PMC8879208 DOI: 10.3390/pathogens11020273] [Citation(s) in RCA: 25] [Impact Index Per Article: 12.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/04/2022] [Revised: 02/10/2022] [Accepted: 02/11/2022] [Indexed: 12/04/2022] Open
Abstract
Food security has become a major concern worldwide in recent years due to ever increasing population. Providing food for the growing billions without disturbing environmental balance is incessantly required in the current scenario. In view of this, sustainable modes of agricultural practices offer better promise and hence are gaining prominence recently. Moreover, these methods have taken precedence currently over chemical-based methods of pest restriction and pathogen control. Adoption of Biological Control is one such crucial technique that is currently in the forefront. Over a period of time, various biocontrol strategies have been experimented with and some have exhibited great success and promise. This review highlights the different methods of plant-pathogen control, types of plant pathogens, their modus operandi and various biocontrol approaches employing a range of microorganisms and their byproducts. The study lays emphasis on the use of upcoming methodologies like microbiome management and engineering, phage cocktails, genetically modified biocontrol agents and microbial volatilome as available strategies to sustainable agricultural practices. More importantly, a critical analysis of the various methods enumerated in the paper indicates the need to amalgamate these techniques in order to improve the degree of biocontrol offered by them.
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14
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Sreelatha S, Kumar N, Yin TS, Rajani S. Evaluating the Antibacterial Activity and Mode of Action of Thymol-Loaded Chitosan Nanoparticles Against Plant Bacterial Pathogen Xanthomonas campestris pv. campestris. Front Microbiol 2022; 12:792737. [PMID: 35095804 PMCID: PMC8795685 DOI: 10.3389/fmicb.2021.792737] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/11/2021] [Accepted: 11/24/2021] [Indexed: 12/27/2022] Open
Abstract
The bacterium Xanthomonas campestris pv. campestris (Xcc) causes black rot disease in cruciferous crops, resulting in severe yield loss worldwide. The excessive use of chemical pesticides in agriculture to control diseases has raised significant concern about the impact on the environment and human health. Nanoparticles have recently gained significant attention in agriculture owing to their promising application in plant disease control, increasing soil fertility and nutrient availability. In the current study, we synthesized thymol-loaded chitosan nanoparticles (TCNPs) and assessed their antibacterial activity against Xcc. The synthesis of TCNPs was confirmed by using ultraviolet–visible spectroscopy. Fourier-transform infrared spectroscopy, transmission electron microscopy, and scanning electron microscopy analysis revealed the functional groups, size, and shape of TCNPs, with sizes ranging from 54 to 250 nm, respectively. The antibacterial activity of TCNPs against Xcc was investigated in vitro by liquid broth, cell viability, and live dead staining assay, and all of them demonstrated the antibacterial activity of TCNPs. Furthermore, TCNPs were found to directly inhibit the growth of Xcc by suppressing the growth of biofilm formation and the production of exopolysaccharides and xanthomonadin. The ultrastructure studies revealed membrane damage in TCNP-treated Xcc cells, causing a release of intracellular contents. Headspace/gas chromatography (GC)–mass spectrometry (MS) analysis showed changes in the volatile profile of Xcc cells treated with TCNPs. Increased amounts of carbonyl components (mainly ketones) and production of new volatile metabolites were observed in Xcc cells incubated with TCNPs. Overall, this study reveals TCNPs as a promising antibacterial candidate against Xcc.
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Affiliation(s)
- Sarangapani Sreelatha
- Temasek Life Sciences Laboratory, National University of Singapore, Singapore, Singapore
| | - Nadimuthu Kumar
- Temasek Life Sciences Laboratory, National University of Singapore, Singapore, Singapore
| | - Tan Si Yin
- Department of Biological Sciences, National University of Singapore, Singapore, Singapore
| | - Sarojam Rajani
- Temasek Life Sciences Laboratory, National University of Singapore, Singapore, Singapore
- *Correspondence: Sarojam Rajani,
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15
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Castrejón-Godínez ML, Tovar-Sánchez E, Valencia-Cuevas L, Rosas-Ramírez ME, Rodríguez A, Mussali-Galante P. Glyphosate Pollution Treatment and Microbial Degradation Alternatives, a Review. Microorganisms 2021; 9:2322. [PMID: 34835448 PMCID: PMC8625783 DOI: 10.3390/microorganisms9112322] [Citation(s) in RCA: 11] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/02/2021] [Revised: 10/26/2021] [Accepted: 11/08/2021] [Indexed: 12/22/2022] Open
Abstract
Glyphosate is a broad-spectrum herbicide extensively used worldwide to eliminate weeds in agricultural areas. Since its market introduction in the 70's, the levels of glyphosate agricultural use have increased, mainly due to the introduction of glyphosate-resistant transgenic crops in the 90's. Glyphosate presence in the environment causes pollution, and recent findings have proposed that glyphosate exposure causes adverse effects in different organisms, including humans. In 2015, glyphosate was classified as a probable carcinogen chemical, and several other human health effects have been documented since. Environmental pollution and human health threats derived from glyphosate intensive use require the development of alternatives for its elimination and proper treatment. Bioremediation has been proposed as a suitable alternative for the treatment of glyphosate-related pollution, and several microorganisms have great potential for the biodegradation of this herbicide. The present review highlights the environmental and human health impacts related to glyphosate pollution, the proposed alternatives for its elimination through physicochemical and biological approaches, and recent studies related to glyphosate biodegradation by bacteria and fungi are also reviewed. Microbial remediation strategies have great potential for glyphosate elimination, however, additional studies are needed to characterize the mechanisms employed by the microorganisms to counteract the adverse effects generated by the glyphosate exposure.
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Affiliation(s)
| | - Efraín Tovar-Sánchez
- Centro de Investigación en Biodiversidad y Conservación, Universidad Autónoma del Estado de Morelos, Cuernavaca 62210, Mexico; (E.T.-S.); (L.V.-C.)
| | - Leticia Valencia-Cuevas
- Centro de Investigación en Biodiversidad y Conservación, Universidad Autónoma del Estado de Morelos, Cuernavaca 62210, Mexico; (E.T.-S.); (L.V.-C.)
| | | | - Alexis Rodríguez
- Centro de Investigación en Biotecnología, Universidad Autónoma del Estado de Morelos, Cuernavaca 62210, Mexico;
| | - Patricia Mussali-Galante
- Centro de Investigación en Biotecnología, Universidad Autónoma del Estado de Morelos, Cuernavaca 62210, Mexico;
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16
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Zhou T, Liu H, Huang Y, Wang Z, Shan Y, Yue Y, Xia Z, Liang Y, An M, Wu Y. ε-poly- L-lysine Affects the Vegetative Growth, Pathogenicity and Expression Regulation of Necrotrophic Pathogen Sclerotinia sclerotiorum and Botrytis cinerea. J Fungi (Basel) 2021; 7:jof7100821. [PMID: 34682242 PMCID: PMC8540936 DOI: 10.3390/jof7100821] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/15/2021] [Revised: 09/27/2021] [Accepted: 09/27/2021] [Indexed: 02/04/2023] Open
Abstract
Microbial secondary metabolites produced by Streptomyces are applied to control plant diseases. The metabolite, ε-poly-l-lysine (ε-PL), is a non-toxic food preservative, but the potential application of this compound as a microbial fungicide in agriculture is rarely reported. In this study, the effect and mode of action of ε-PL on two necrotrophic pathogenic fungi, Sclerotinia sclerotiorum and Botrytis cinerea, were investigated. The results showed that ε-PL effectively inhibited the mycelial growth of S. sclerotiorum and B. cinerea with EC50 values of 283 μg/mL and 281 μg/mL, respectively. In addition, ε-PL at the dose of 150 and 300 μg/mL reduced S. sclerotiorum sclerotia formation. The results of the RNA-seq and RT-qPCR validation indicated that ε-PL significantly regulated the gene expression of critical differential expressed genes (DEGs) involved in fungal growth, metabolism, pathogenicity, and induced an increase in the expression of the fungal stress responses and the detoxification genes. These results provided new insights for understanding the modes of action of ε-PL on S. sclerotiorum and B. cinerea and improved the sustainable management of these plant diseases.
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17
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Ratnadass A, Deguine JP. Crop protection practices and viral zoonotic risks within a One Health framework. THE SCIENCE OF THE TOTAL ENVIRONMENT 2021; 774:145172. [PMID: 33610983 DOI: 10.1016/j.scitotenv.2021.145172] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/03/2020] [Revised: 01/10/2021] [Accepted: 01/10/2021] [Indexed: 06/12/2023]
Abstract
Recent viral zoonotic epidemics have been attributed partially to the negative impact of human activities on ecosystem biodiversity. Agricultural activities, particularly conventional crop protection (CP) practices, are a major threat to global biodiversity, ecosystem health and human health. Here we review interactions between CP practices and viral zoonoses (VZs), the first time this has been done. It should be noted that a) VZs stand at the interface between human, animal and ecosystem health; b) some VZs involve arthropod vectors that are affected by CP practices; and c) some crop pests, or their natural enemies are vertebrate reservoirs/carriers of certain VZs, and their contact with humans or domestic animals is affected by CP practices. Our review encompasses examples highlighting interactions between VZs and CP practices, both efficiency improvement-based (i.e. conventional with agrochemical insecticides and rodenticides), substitution-based (i.e. mainly with physical/mechanical or biopesticidal pest control), and redesign-based (i.e. mainly with conservation biological pest control, including some forms of crop-livestock integration). These CP practices mainly target arthropod and vertebrate pests. They also target, to a lesser extent, weeds and plant pathogens. Conventional and some physical/mechanical control methods and some forms of biopesticidal and crop-livestock integration practices were found to have mixed outcomes in terms of VZ risk management. Conversely, practices based on biological control by habitat conservation of arthropod or vertebrate natural enemies, falling within the Agroecological Crop Protection (ACP) framework, result in VZ prevention at various scales (local to global, and short-term to long-term). ACP addresses major global challenges including climate resilience, biodiversity conservation and animal welfare, and helps integrate plant health within the extended "One Health" concept.
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Affiliation(s)
- Alain Ratnadass
- CIRAD, UPR HortSys, F-97455 Saint-Pierre, Réunion, France; HortSys, Univ Montpellier, CIRAD, Montpellier, France.
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18
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Bellumori M, Innocenti M, Congiu F, Cencetti G, Raio A, Menicucci F, Mulinacci N, Michelozzi M. Within-Plant Variation in Rosmarinus officinalis L. Terpenes and Phenols and Their Antimicrobial Activity against the Rosemary Phytopathogens Alternaria alternata and Pseudomonas viridiflava. Molecules 2021; 26:3425. [PMID: 34198771 PMCID: PMC8201224 DOI: 10.3390/molecules26113425] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/23/2021] [Revised: 06/01/2021] [Accepted: 06/03/2021] [Indexed: 11/16/2022] Open
Abstract
This study investigated within-plant variability of the main bioactive compounds in rosemary (Rosmarinus officinalis L.). Volatile terpenes, including the enantiomeric distribution of monoterpenes, and phenols were analyzed in young and mature foliar, cortical and xylem tissues. In addition, antimicrobial activity of rosmarinic acid and selected terpenes was evaluated against two rosemary pathogens, Alternaria alternata and Pseudomonas viridiflava. Data showed that total concentration and relative contents of terpenes changed in relation to tissue source and age. Their highest total concentration was observed in the young leaves, followed by mature leaves, cortical and xylem tissues. Rosmarinic acid and carnosic acid contents did not show significant differences between leaf tissues of different ages, while young and mature samples showed variations in the content of four flavonoids. These results are useful for a more targeted harvesting of rosemary plants, in order to produce high-quality essential oils and phenolic extracts. Microbial tests showed that several terpenes and rosmarinic acid significantly inhibited the growth of typical rosemary pathogens. Overall, results on antimicrobial activity suggest the potential application of these natural compounds as biochemical markers in breeding programs aimed to select new chemotypes less susceptible to pathogen attacks, and as eco-friendly chemical alternatives to synthetic pesticides.
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Affiliation(s)
- Maria Bellumori
- Department of Neurofarba, Division of Pharmaceutical and Nutraceutical Sciences, University of Florence, Via U. Schiff 6, Sesto Fiorentino, 50019 Florence, Italy; (M.B.); (M.I.); (F.C.)
| | - Marzia Innocenti
- Department of Neurofarba, Division of Pharmaceutical and Nutraceutical Sciences, University of Florence, Via U. Schiff 6, Sesto Fiorentino, 50019 Florence, Italy; (M.B.); (M.I.); (F.C.)
| | - Federica Congiu
- Department of Neurofarba, Division of Pharmaceutical and Nutraceutical Sciences, University of Florence, Via U. Schiff 6, Sesto Fiorentino, 50019 Florence, Italy; (M.B.); (M.I.); (F.C.)
| | - Gabriele Cencetti
- Institute of Biosciences and Bioresources, National Research Council of Italy (CNR), Via Madonna del Piano 10, Sesto Fiorentino, 50019 Florence, Italy; (G.C.); (M.M.)
| | - Aida Raio
- Institute for Sustainable Plant Protection, National Research Council of Italy (CNR), Via Madonna del Piano 10, Sesto Fiorentino, 50019 Florence, Italy;
| | - Felicia Menicucci
- Institute for the Chemistry of OrganoMetallic Compounds, National Research Council of Italy (CNR), Via Madonna del Piano 10, Sesto Fiorentino, 50019 Florence, Italy;
| | - Nadia Mulinacci
- Department of Neurofarba, Division of Pharmaceutical and Nutraceutical Sciences, University of Florence, Via U. Schiff 6, Sesto Fiorentino, 50019 Florence, Italy; (M.B.); (M.I.); (F.C.)
| | - Marco Michelozzi
- Institute of Biosciences and Bioresources, National Research Council of Italy (CNR), Via Madonna del Piano 10, Sesto Fiorentino, 50019 Florence, Italy; (G.C.); (M.M.)
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19
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Xi H, Zhang X, Qu Z, Yang D, Alariqi M, Yang Z, Nie X, Zhu L. Effects of cotton-maize rotation on soil microbiome structure. MOLECULAR PLANT PATHOLOGY 2021; 22:673-682. [PMID: 33774915 PMCID: PMC8126184 DOI: 10.1111/mpp.13053] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/19/2020] [Revised: 12/08/2020] [Accepted: 02/25/2021] [Indexed: 05/13/2023]
Abstract
Verticillium wilt is a disastrous disease in cotton-growing regions in China. As a common management method, cotton rotation with cereal crops is used to minimize the loss caused by Verticillium dahliae. However, the correlation between soil microbiome and the control of Verticillium wilt under a crop rotation system is unclear. Therefore, three cropping systems (fallow, cotton continuous cropping, and cotton-maize rotation) were designed and applied for three generations under greenhouse conditions to investigate the different responses of the soil microbial community. The soil used in this study was taken from a long-term cotton continuous cropping field and inoculated with V. dahliae before use. Our results showed that the diversity of the soil bacterial community was increased under cotton-maize rotation, while the diversity of the fungal community was obviously decreased. Meanwhile, the structure and composition of the bacterial communities were similar even under the different cropping systems, but they differed in the soil fungal communities. Through microbial network interaction analysis, we found that Verticillium interacted with 17 bacterial genera, among which Terrabacter had the highest correlation with Verticillium. Furthermore, eight fungal and eight bacterial species were significantly correlated with V. dahliae. Collectively, this work aimed to study the interactions among V. dahliae, the soil microbiome, and plant hosts, and elucidate the relationship between crop rotation and soil microbiome, providing a new theoretical basis to screen the biological agents that may contribute to Verticillium wilt control.
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Affiliation(s)
- Hui Xi
- College of AgricultureShihezi UniversityShiheziChina
| | - Xuekun Zhang
- State Key Laboratory of Agricultural MicrobiologyHuazhong Agricultural UniversityWuhanChina
| | - Zheng Qu
- State Key Laboratory of Agricultural MicrobiologyHuazhong Agricultural UniversityWuhanChina
| | - Dingyi Yang
- National Key Laboratory of Crop Genetic ImprovementHuazhong Agricultural UniversityWuhanChina
| | - Muna Alariqi
- National Key Laboratory of Crop Genetic ImprovementHuazhong Agricultural UniversityWuhanChina
| | | | - Xinhui Nie
- College of AgricultureShihezi UniversityShiheziChina
| | - Longfu Zhu
- National Key Laboratory of Crop Genetic ImprovementHuazhong Agricultural UniversityWuhanChina
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20
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Ramakrishnan B, Maddela NR, Venkateswarlu K, Megharaj M. Organic farming: Does it contribute to contaminant-free produce and ensure food safety? THE SCIENCE OF THE TOTAL ENVIRONMENT 2021; 769:145079. [PMID: 33482543 DOI: 10.1016/j.scitotenv.2021.145079] [Citation(s) in RCA: 14] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/09/2020] [Revised: 01/06/2021] [Accepted: 01/06/2021] [Indexed: 06/12/2023]
Abstract
Organic farming for higher ecological and human health benefits has been adopted in about 186 countries, covering a total area of 71.5 Mha worldwide. Because of the associated practices, the flows of several environmental pollutants into the organic products threaten food safety and human health. The contaminants that occur at higher concentrations in organic produce include persistent organic pollutants (61.3-436.9 ng g-1 lamb meat, and 0.28 pg g-1-2.75 ng g-1 bovine meat), heavy metals (0.5-33.0 mg kg-1 lettuce), organochlorine pesticides (11-199 μg g-1 carrots), cyclodienes, hexachlorocyclohexanes, hexabromocyclododecane (2-3 times higher than in conventionally produced porcine meat), hexachlorobenzene (1.38-14.49 ng g-1 fat in milk), and non-brominated flame retardants (1.3-3.2 times higher than in conventional produce of greenhouse-grown tomato and cucumber). Moreover, some pollutants like per- and polyfluoroalkyl substances with a longer half-life (1.50-9.10 yrs) are reported to occur in several organic products. In fact, several legacy persistent organic pollutants are known for their significant trophic magnification in an urban terrestrial ecosystem. In addition, many plant functionalities are adversely affected in organic farming. Therefore, the long-term usage of organic products containing such pollutants poses a significant threat to human health. The major limitation in organic livestock production is the severe shortage of organic feed. Several variable standards and technical regulations set by the government and private agencies are the major obstacles in the global marketing of organic products. The present review critically addresses the impact of organic farming on hidden risks due to the use of composts as the amendment resources that enhance the phytoaccumulation and trophic transfer of pollutants, the functional diversity of the ecosystems, and poor harmonization among the policies and regulations in different countries for organic farming. The future directions of research have been suggested to mitigate unintended flows of pollutants into the organic products.
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Affiliation(s)
| | - Naga Raju Maddela
- Departamento de Ciencias Biológicas, Facultad de Ciencias de la Salud, Universidad Técnica de Manabí, Portoviejo 130105, Ecuador
| | - Kadiyala Venkateswarlu
- Formerly Department of Microbiology, Sri Krishnadevaraya University, Anantapuramu 515003, India
| | - Mallavarapu Megharaj
- Global Centre for Environmental Remediation (GCER), Cooperative Research Centre for Contamination Assessment and Remediation of the Environment (CRC CARE), Faculty of Science, The University of Newcastle, Callaghan, NSW 2308, Australia.
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21
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Levine M. Fluorescence-Based Sensing of Pesticides Using Supramolecular Chemistry. Front Chem 2021; 9:616815. [PMID: 33937184 PMCID: PMC8085505 DOI: 10.3389/fchem.2021.616815] [Citation(s) in RCA: 18] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/13/2020] [Accepted: 01/11/2021] [Indexed: 01/02/2023] Open
Abstract
The detection of pesticides in real-world environments is a high priority for a broad range of applications, including in areas of public health, environmental remediation, and agricultural sustainability. While many methods for pesticide detection currently exist, the use of supramolecular fluorescence-based methods has significant practical advantages. Herein, we will review the use of fluorescence-based pesticide detection methods, with a particular focus on supramolecular chemistry-based methods. Illustrative examples that show how such methods have achieved success in real-world environments are also included, as are areas highlighted for future research and development.
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Affiliation(s)
- Mindy Levine
- Ariel University, Department of Chemical Sciences, Ariel, Israel
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22
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Cai H, Tao N, Guo C. Systematic Investigation of the Effects of Macro-elements and Iron on Soybean Plant Response to Fusarium oxysporum Infection. THE PLANT PATHOLOGY JOURNAL 2020; 36:398-405. [PMID: 33082724 PMCID: PMC7542030 DOI: 10.5423/ppj.oa.04.2020.0069] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/20/2020] [Revised: 08/14/2020] [Accepted: 08/18/2020] [Indexed: 05/03/2023]
Abstract
Nutrient manipulation is a promising strategy for controlling plant diseases in sustainable agriculture. Although many studies have investigated the relationships between certain elements and plant diseases, few have comprehensively explored how differing mineral nutrition levels might affect plant-fungal pathogen interactions, namely plant susceptibility and resistance. Here, we systematically explored the effects of the seven mineral elements that plants require in the greatest amounts for normal development on the susceptibility of soybean plants (Glycine max) to Fusarium oxysporum infection in controlled greenhouse conditions. Nitrogen (N) negligibly affected plant susceptibility to infection in the range 4 to 24 mM for both tested soybean cultivars. At relatively high concentrations, phosphorus (P) increased plant susceptibility to infection, which led to severely reduced shoot and root dry weights. Potassium (K), calcium (Ca), magnesium (Mg), sulfur (S), and iron (Fe) induced plant resistance to infection as their concentrations were increased. For K and Ca, moderate concentrations had a positive effect on plant resistance to the pathogen, whereas relatively high doses of either element adversely affected plant growth and promoted disease symptoms. Further experiments were conducted, assessing disease suppression by selected combinations of macro-elements and Fe at screened concentrations, i.e., K (9 mM) plus Fe (0.2 mM), and S (4 mM) plus Fe (0.2 mM). The disease index was significantly reduced by the combination of K plus Fe. In conclusion, this systematic investigation of soybean plant responses to F. oxysporum infection provides a solid basis for future environmentally-friendly choices for application in soybean disease control programs.
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Affiliation(s)
- Hongsheng Cai
- Key Laboratory of Molecular and Cytogenetics of Heilongjiang Province, College of Life Science and Technology, Harbin Normal University, Harbin 150025, China
- Co-corresponding authors. Hongsheng Cai, Phone) +86-451-88060576, E-mail) , Changhong Guo, Phone) +86-451-88060576, E-mail) , ORCID, Hongsheng Cai https://orcid.org/0000-0002-9968-8719
| | - Nan Tao
- Key Laboratory of Molecular and Cytogenetics of Heilongjiang Province, College of Life Science and Technology, Harbin Normal University, Harbin 150025, China
| | - Changhong Guo
- Key Laboratory of Molecular and Cytogenetics of Heilongjiang Province, College of Life Science and Technology, Harbin Normal University, Harbin 150025, China
- Co-corresponding authors. Hongsheng Cai, Phone) +86-451-88060576, E-mail) , Changhong Guo, Phone) +86-451-88060576, E-mail) , ORCID, Hongsheng Cai https://orcid.org/0000-0002-9968-8719
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23
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Panthapulakkal Narayanan S, Lung SC, Liao P, Lo C, Chye ML. The overexpression of OsACBP5 protects transgenic rice against necrotrophic, hemibiotrophic and biotrophic pathogens. Sci Rep 2020; 10:14918. [PMID: 32913218 PMCID: PMC7483469 DOI: 10.1038/s41598-020-71851-9] [Citation(s) in RCA: 13] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/31/2019] [Accepted: 08/20/2020] [Indexed: 02/07/2023] Open
Abstract
The most devastating diseases in rice (Oryza sativa) are sheath blight caused by the fungal necrotroph Rhizoctonia solani, rice blast by hemibiotrophic fungus Magnaporthe oryzae, and leaf blight by bacterial biotroph Xanthomonas oryzae (Xoo). It has been reported that the Class III acyl-CoA-binding proteins (ACBPs) such as those from dicots (Arabidopsis and grapevine) play a role in defence against biotrophic pathogens. Of the six Arabidopsis (Arabidopsis thaliana) ACBPs, AtACBP3 conferred protection in transgenic Arabidopsis against Pseudomonas syringae, but not the necrotrophic fungus, Botrytis cinerea. Similar to Arabidopsis, rice possesses six ACBPs, designated OsACBPs. The aims of this study were to test whether OsACBP5, the homologue of AtACBP3, can confer resistance against representative necrotrophic, hemibiotrophic and biotrophic phytopathogens and to understand the mechanisms in protection. Herein, when OsACBP5 was overexpressed in rice, the OsACBP5-overexpressing (OsACBP5-OE) lines exhibited enhanced disease resistance against representative necrotrophic (R. solani & Cercospora oryzae), hemibiotrophic (M. oryzae & Fusarium graminearum) and biotrophic (Xoo) phytopathogens. Progeny from a cross between OsACBP5-OE9 and the jasmonate (JA)-signalling deficient mutant were more susceptible than the wild type to infection by the necrotroph R. solani. In contrast, progeny from a cross between OsACBP5-OE9 and the salicylic acid (SA)-signalling deficient mutant was more susceptible to infection by the hemibiotroph M. oryzae and biotroph Xoo. Hence, enhanced resistance of OsACBP5-OEs against representative necrotrophs appears to be JA-dependent whilst that to (hemi)biotrophs is SA-mediated.
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Affiliation(s)
| | - Shiu-Cheung Lung
- School of Biological Sciences, The University of Hong Kong, Pokfulam Road, Pokfulam, Hong Kong, China
| | - Pan Liao
- School of Biological Sciences, The University of Hong Kong, Pokfulam Road, Pokfulam, Hong Kong, China
| | - Clive Lo
- School of Biological Sciences, The University of Hong Kong, Pokfulam Road, Pokfulam, Hong Kong, China
| | - Mee-Len Chye
- School of Biological Sciences, The University of Hong Kong, Pokfulam Road, Pokfulam, Hong Kong, China.
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Metagenomic profiling of the community structure, diversity, and nutrient pathways of bacterial endophytes in maize plant. Antonie van Leeuwenhoek 2020; 113:1559-1571. [PMID: 32803452 DOI: 10.1007/s10482-020-01463-w] [Citation(s) in RCA: 13] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/01/2020] [Accepted: 07/11/2020] [Indexed: 01/06/2023]
Abstract
This study investigated the diversity, structure and nutrient pathways of the root-associated bacterial endophytes of maize plant cultivated using different fertilizers to verify the claim that inorganic fertilizers have some toxic effects on plant microbiome and not are ecofriendly. Whole DNA was extracted from the roots of maize plants cultivated with organic fertilizer, inorganic fertilizer and maize planted without any fertilizer at different planting sites in an experimental field and sequenced using shotgun metagenomics. Our results using the Subsystem database revealed a total of 28 phyla and different nutrient pathways in all the samples. The major phyla observed were Firmicutes, Bacteroidetes, Actinobacteria, Proteobacteria, Acidobacteria, Chloroflexi, Verrucomicrobia, Tenericutes, Planctomycetes, Cyanobacteria, and Chlorobi. Bacteroidetes dominated maize from organic fertilizer sites, Firmicutes dominated the no fertilizers site while Proteobacteria dominated Inorganic fertilizer. The diversity analysis showed that the abundance of endophytic bacteria in all the sites is in the order organic fertilizer (FK) > no fertilizer (CK) > inorganic fertilizer (NK). Furthermore, the major nutrient cycling pathways identified are linked with nitrogen and phosphorus metabolism which were higher in FK samples. Going by the results obtained, this study suggests that organic fertilizer could be a boost to sustainable agricultural practices and should be encouraged. Also, a lot of novel endophytic bacteria groups were identified in maize. Mapping out strategies to isolate and purify this novel endophytic bacteria could help in promoting sustainable agriculture alongside biotechnological applications in future.
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Li Y, Liu Y, Yang D, Jin Q, Wu C, Cui J. Multifunctional molybdenum disulfide-copper nanocomposite that enhances the antibacterial activity, promotes rice growth and induces rice resistance. JOURNAL OF HAZARDOUS MATERIALS 2020; 394:122551. [PMID: 32272326 DOI: 10.1016/j.jhazmat.2020.122551] [Citation(s) in RCA: 12] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/11/2019] [Revised: 03/11/2020] [Accepted: 03/15/2020] [Indexed: 06/11/2023]
Abstract
Molybdenum disulfide sheets loaded with copper nanoparticles (MoS2-CuNPs) was prepared and its antibacterial activity against phytopathogen Xanthomonas oryzae pv. oryzae (Xoo) was investigated in vitro and in vivo for the first time. In a 2 h co-incubation, MoS2-CuNPs exhibited 19.2 times higher antibacterial activity against Xoo cells than a commercial copper bactericide (Kocide 3000). In the detached leaf experiment, the disease severity decreased from 86.25 % to 7.5 % in the MoS2-CuNPs treated rice leaves. The results further demonstrated that foliar application of MoS2-CuNPs could form a protective film and increase the density of trichome on the surface of rice leaves, finally prevent the infection of Xoo cells. This was probably due to the synergistic effect of MoS2-CuNPs. Additionally, foliar application of MoS2-CuNPs (4-32 μg/mL) increased obviously the content of Mo and chlorophyll (up 30.85 %), and then improved the growth of rice seedlings. Furthermore, the obtained MoS2-CuNPs could activate the activities of the antioxidant enzymes in rice, indicating higher resistance of rice under abiotic/biotic stresses. The multifunctional MoS2-CuNPs with superior antibacterial activity provided a promising alternative to the traditional antibacterial agents and had great potential in plant protection.
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Affiliation(s)
- Yadong Li
- Guangdong Key Laboratory of Integrated Agro-environmental Pollution Control and Management, Guangdong Institute of Eco-environmental Science & Technology, Guangzhou 510650, China; National-Regional Joint Engineering Research Center for Soil Pollution Control and Remediation in South China, Guangzhou 510650, China; Guangdong Provincial Engineering Technology Research Center for Optical Agriculture, College of Materials and Energy, South China Agricultural University, Guangzhou 510642, China
| | - Yingliang Liu
- Guangdong Provincial Engineering Technology Research Center for Optical Agriculture, College of Materials and Energy, South China Agricultural University, Guangzhou 510642, China
| | - Desong Yang
- College of Agriculture, Shihezi University, Shihezi 832000, Xinjiang, China; Engineering Research Center of Materials-Oriented Chemical Engineering of Xinjiang Bintuan, Shihezi University, Shihezi 832000, Xinjiang, China.
| | - Qian Jin
- Guangdong Key Laboratory of Integrated Agro-environmental Pollution Control and Management, Guangdong Institute of Eco-environmental Science & Technology, Guangzhou 510650, China; National-Regional Joint Engineering Research Center for Soil Pollution Control and Remediation in South China, Guangzhou 510650, China
| | - Cailan Wu
- College of Agriculture, Shihezi University, Shihezi 832000, Xinjiang, China; Engineering Research Center of Materials-Oriented Chemical Engineering of Xinjiang Bintuan, Shihezi University, Shihezi 832000, Xinjiang, China
| | - Jianghu Cui
- Guangdong Key Laboratory of Integrated Agro-environmental Pollution Control and Management, Guangdong Institute of Eco-environmental Science & Technology, Guangzhou 510650, China; National-Regional Joint Engineering Research Center for Soil Pollution Control and Remediation in South China, Guangzhou 510650, China.
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26
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Liu H, Chen J, Xia Z, An M, Wu Y. Effects of ε-poly-l-lysine on vegetative growth, pathogenicity and gene expression of Alternaria alternata infecting Nicotiana tabacum. PESTICIDE BIOCHEMISTRY AND PHYSIOLOGY 2020; 163:147-153. [PMID: 31973852 DOI: 10.1016/j.pestbp.2019.11.005] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/23/2019] [Revised: 11/04/2019] [Accepted: 11/06/2019] [Indexed: 06/10/2023]
Abstract
Microbial secondary metabolites produced by Streptomyces are applied to control plant diseases. ε-poly-l-lysine (ε-PL) is a non-toxic food preservative, but the potential application of ε-PL as a microbial fungicide in agriculture has rarely been reported. In this study, Alternaria alternata (A. alternata) was used to reveal the effect and mode of action for ε-PL on the plant pathogenic fungi. The results showed that ε-PL effectively inhibited necrotic-lesion development caused by A. alternata on tobacco. Mycelial growth was also significantly inhibited in vitro by 100 μg/ml ε-PL using in vitro analysis. Moreover, 25 μg/ml ε-PL inhibited spore germination and induced abnormal morphological development of A. alternata hyphae. To clarify the molecular-genetic antifungal mechanisms, we selected several crucial genes involved in the development and pathogenesis of A. alternata and studied their expression regulated by ε-PL. Results of real-time quantitative PCR showed that a mycelium morphology and pathogenic process related cyclic adenosine monophosphate protein (cAMP) dependent protein kinase A (PKA), Alternaria alternata cAMP-dependent protein kinase catalytic subunit (AAPK1) and the early infection-related glyceraldehyde-3-phosphate dehydrogenase (GAPDH) were down-regulated after ε-PL treatment. The results provide novel insights for the application of ε-PL in the control of plant diseases caused by A. alternata.
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Affiliation(s)
- He Liu
- College of Plant Protection, Shenyang Agricultural University, Shenyang 110866, Liaoning, China
| | - Jianguang Chen
- College of Plant Protection, Shenyang Agricultural University, Shenyang 110866, Liaoning, China
| | - Zihao Xia
- College of Plant Protection, Shenyang Agricultural University, Shenyang 110866, Liaoning, China
| | - Mengnan An
- College of Plant Protection, Shenyang Agricultural University, Shenyang 110866, Liaoning, China.
| | - Yuanhua Wu
- College of Plant Protection, Shenyang Agricultural University, Shenyang 110866, Liaoning, China.
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Fontana DC, Schmidt D, Kulczynski SM, Caron BO, Pretto MM, Mariotto AB, Santos JD, Holz E. Fungicidal potential of essential oils in control of Fusarium spp. and Sclerotinia sclerotiorum. ARQUIVOS DO INSTITUTO BIOLÓGICO 2020. [DOI: 10.1590/1808-1657000612019] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022] Open
Abstract
ABSTRACT The use of highly toxic pesticides to control soil pathogens, such as Fusarium spp. and Sclerotinia sclerotiorum has generated concern, due to the irreversible impacts caused on the environment, in addition to selecting resistant isolates. In this way, essential oils appear as an efficient alternative in control of diseases. Facing the problem of soil pathogens control and high antimicrobial fungicide that essential oils present, this work aimed to evaluate the in vitro fungicidal potential of essential oils in control of Fusarium spp. and S. sclerotiorum. A completely randomized design, factorial scheme 2×4×8 was used, with two isolates (Fusarium spp. and S. sclerotiorum), four essential oils (Aloysia citriodora, Cymbopogon winterianus, Lippia alba and Ocimum americanum), eight essential oil concentrations (0.0; 0.2; 0.4; 0.6; 0.8; 1.0; 1.2 and 1.4 ?L·mL-1), and ten replicates. The essential oils inhibited mycelial growth of the fungi in different concentrations, being their potential justified by the presence of antifungal chemical compounds. Essential oils of A. citriodora, C. winterianus, L. alba and O. americanum present high fungicidal potential, being viable alternatives for formulation of commercial products, boosting the pesticides industry.
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28
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Petit S, Muneret L, Carbonne B, Hannachi M, Ricci B, Rusch A, Lavigne C. Landscape-scale expansion of agroecology to enhance natural pest control: A systematic review. ADV ECOL RES 2020. [DOI: 10.1016/bs.aecr.2020.09.001] [Citation(s) in RCA: 16] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]
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29
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Abd-Elgawad MMM. Plant-Parasitic Nematodes and Their Biocontrol Agents: Current Status and Future Vistas. MANAGEMENT OF PHYTONEMATODES: RECENT ADVANCES AND FUTURE CHALLENGES 2020:171-203. [DOI: 10.1007/978-981-15-4087-5_8] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 09/01/2023]
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30
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Carranza CS, Aluffi ME, Benito N, Magnoli K, Barberis CL, Magnoli CE. Effect of in vitro glyphosate on Fusarium spp. growth and disease severity in maize. JOURNAL OF THE SCIENCE OF FOOD AND AGRICULTURE 2019; 99:5064-5072. [PMID: 30977147 DOI: 10.1002/jsfa.9749] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/11/2018] [Revised: 04/08/2019] [Accepted: 04/09/2019] [Indexed: 06/09/2023]
Abstract
BACKGROUND Glyphosate (GP) is one of the main pesticides used for maize production. Fusarium sp. is a fungal genus with several phytopathogenic species and toxigenic features. In this study, the culturable soil mycota was evaluated using the surface-spray method. The effect of GP on the growth parameters (growth rate and lag phase) of Fusarium spp. was also tested on solid media conditioned with different water activities. Finally, the GP effect on disease severity caused by Fusarium sp. in maize seedlings was studied. RESULTS The results showed that Fusarium species are frequently isolated from GP-exposed soils. The GP concentrations tested had a significant effect on F. graminearum, F. verticillioides and F. oxysporum growth parameters on solid media. The pathogenicity tests showed that the disease severity of the maize seedlings significantly increased with increasing GP concentrations. CONCLUSIONS This study showed that Fusarium species are frequently isolated from pesticide-exposed soils and the GP concentrations tested had a significant effect both on growth parameters and disease severity in maize. This study provides an approach to the effect of GP on Fusarium sp. growth and pathogenicity that reinforces the importance of evaluating all the factors that could affect feed and food production. © 2019 Society of Chemical Industry.
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Affiliation(s)
- Cecilia Soledad Carranza
- Departamento de Microbiología e Inmunología, Facultad de Ciencias Exactas, Físico, Químicas y Naturales, Universidad Nacional de Río Cuarto, Córdoba, Argentina
- Consejo Nacional de Investigaciones Científicas y Técnicas (CONICET), Ciudad Autónoma de Buenos Aires, Argentina
| | - Melisa Eglé Aluffi
- Departamento de Microbiología e Inmunología, Facultad de Ciencias Exactas, Físico, Químicas y Naturales, Universidad Nacional de Río Cuarto, Córdoba, Argentina
- Consejo Nacional de Investigaciones Científicas y Técnicas (CONICET), Ciudad Autónoma de Buenos Aires, Argentina
| | - Nicolás Benito
- Departamento de Microbiología e Inmunología, Facultad de Ciencias Exactas, Físico, Químicas y Naturales, Universidad Nacional de Río Cuarto, Córdoba, Argentina
- Fondo para la Investigación Científica y Tecnológica (FONCyT), Ciudad Autónoma de Buenos Aires, Argentina
| | - Karen Magnoli
- Departamento de Microbiología e Inmunología, Facultad de Ciencias Exactas, Físico, Químicas y Naturales, Universidad Nacional de Río Cuarto, Córdoba, Argentina
- Consejo Nacional de Investigaciones Científicas y Técnicas (CONICET), Ciudad Autónoma de Buenos Aires, Argentina
| | - Carla Lorena Barberis
- Departamento de Microbiología e Inmunología, Facultad de Ciencias Exactas, Físico, Químicas y Naturales, Universidad Nacional de Río Cuarto, Córdoba, Argentina
- Consejo Nacional de Investigaciones Científicas y Técnicas (CONICET), Ciudad Autónoma de Buenos Aires, Argentina
| | - Carina Elizabeth Magnoli
- Departamento de Microbiología e Inmunología, Facultad de Ciencias Exactas, Físico, Químicas y Naturales, Universidad Nacional de Río Cuarto, Córdoba, Argentina
- Consejo Nacional de Investigaciones Científicas y Técnicas (CONICET), Ciudad Autónoma de Buenos Aires, Argentina
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Abstract
Viral diseases provide a major challenge to twenty-first century agriculture worldwide. Climate change and human population pressures are driving rapid alterations in agricultural practices and cropping systems that favor destructive viral disease outbreaks. Such outbreaks are strikingly apparent in subsistence agriculture in food-insecure regions. Agricultural globalization and international trade are spreading viruses and their vectors to new geographical regions with unexpected consequences for food production and natural ecosystems. Due to the varying epidemiological characteristics of diverent viral pathosystems, there is no one-size-fits-all approach toward mitigating negative viral disease impacts on diverse agroecological production systems. Advances in scientific understanding of virus pathosystems, rapid technological innovation, innovative communication strategies, and global scientific networks provide opportunities to build epidemiologic intelligence of virus threats to crop production and global food security. A paradigm shift toward deploying integrated, smart, and eco-friendly strategies is required to advance virus disease management in diverse agricultural cropping systems.
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Affiliation(s)
- Roger A C Jones
- Institute of Agriculture, University of Western Australia, Crawley, Western Australia 6009, Australia; .,Department of Primary Industries and Regional Development, South Perth, Western Australia 6151, Australia
| | - Rayapati A Naidu
- Department of Plant Pathology, Irrigated Agriculture Research and Extension Center, Washington State University, Prosser, Washington 99350, USA;
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32
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Bevacqua D, Génard M, Lescourret F, Martinetti D, Vercambre G, Valsesia P, Mirás-Avalos JM. Coupling epidemiological and tree growth models to control fungal diseases spread in fruit orchards. Sci Rep 2019; 9:8519. [PMID: 31186487 PMCID: PMC6560096 DOI: 10.1038/s41598-019-44898-6] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/15/2018] [Accepted: 05/24/2019] [Indexed: 12/13/2022] Open
Abstract
Agronomic practices can alter plant susceptibility to diseases and represent a promising alternative to the use of pesticides. Yet, they also alter crop quality and quantity so that the evaluation of their efficacy is not straightforward. Here we couple a compartmental epidemiological model for brown rot diffusion in fruit orchards with a fruit-tree growth model explicitly considering the role of agronomic practices over fruit quality. The new modelling framework permits us to evaluate, in terms of quantity and quality of the fruit production, management scenarios characterized by different levels of regulated deficit irrigation and crop load. Our results suggest that a moderate water stress in the final weeks of fruit development and a moderate fruit load provide effective control on the brown rot spreading, and eventually guarantee monetary returns similar to those that would be obtained in the absence of the disease.
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Affiliation(s)
- Daniele Bevacqua
- UR 1115, Plantes et Systèmes de Culture Horticoles, Institut National de la Recherche Agronomique, Avignon, France.
| | - Michel Génard
- UR 1115, Plantes et Systèmes de Culture Horticoles, Institut National de la Recherche Agronomique, Avignon, France
| | - Françoise Lescourret
- UR 1115, Plantes et Systèmes de Culture Horticoles, Institut National de la Recherche Agronomique, Avignon, France
| | - Davide Martinetti
- UR 546, Bistatistique et Processus Spatiaux, Institut National de la Recherche Agronomique, Avignon, France
| | - Gilles Vercambre
- UR 1115, Plantes et Systèmes de Culture Horticoles, Institut National de la Recherche Agronomique, Avignon, France
| | - Pierre Valsesia
- UR 1115, Plantes et Systèmes de Culture Horticoles, Institut National de la Recherche Agronomique, Avignon, France
| | - Josè Manuel Mirás-Avalos
- UR 1115, Plantes et Systèmes de Culture Horticoles, Institut National de la Recherche Agronomique, Avignon, France
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Dennert F, Imperiali N, Staub C, Schneider J, Laessle T, Zhang T, Wittwer R, van der Heijden MGA, Smits THM, Schlaeppi K, Keel C, Maurhofer M. Conservation tillage and organic farming induce minor variations in Pseudomonas abundance, their antimicrobial function and soil disease resistance. FEMS Microbiol Ecol 2019; 94:4985836. [PMID: 29701793 DOI: 10.1093/femsec/fiy075] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/21/2018] [Accepted: 04/23/2018] [Indexed: 01/29/2023] Open
Abstract
Conservation tillage and organic farming are strategies used worldwide to preserve the stability and fertility of soils. While positive effects on soil structure have been extensively reported, the effects on specific root- and soil-associated microorganisms are less known. The aim of this study was to investigate how conservation tillage and organic farming influence the frequency and activity of plant-beneficial pseudomonads. Amplicon sequencing using the 16S rRNA gene revealed that Pseudomonas is among the most abundant bacterial taxa in the root microbiome of field-grown wheat, independent of agronomical practices. However, pseudomonads carrying genes required for the biosynthesis of specific antimicrobial compounds were enriched in samples from conventionally farmed plots without tillage. In contrast, disease resistance tests indicated that soil from conventional no tillage plots is less resistant to the soilborne pathogen Pythium ultimum compared to soil from organic reduced tillage plots, which exhibited the highest resistance of all compared cropping systems. Reporter strain-based gene expression assays did not reveal any differences in Pseudomonas antimicrobial gene expression between soils from different cropping systems. Our results suggest that plant-beneficial pseudomonads can be favoured by certain soil cropping systems, but soil resistance against plant diseases is likely determined by a multitude of biotic factors in addition to Pseudomonas.
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Affiliation(s)
- Francesca Dennert
- ETH Zürich, Plant Pathology, Institute of Integrative Biology, Universitätsstrasse 2, 8092 Zürich, Switzerland
| | - Nicola Imperiali
- University of Lausanne, Department of Fundamental Microbiology, Quartier UNIL-Sorge, CH-1015 Lausanne, Switzerland
| | - Cornelia Staub
- ETH Zürich, Plant Pathology, Institute of Integrative Biology, Universitätsstrasse 2, 8092 Zürich, Switzerland
| | - Jana Schneider
- ETH Zürich, Plant Pathology, Institute of Integrative Biology, Universitätsstrasse 2, 8092 Zürich, Switzerland
| | - Titouan Laessle
- University of Lausanne, Department of Fundamental Microbiology, Quartier UNIL-Sorge, CH-1015 Lausanne, Switzerland
| | - Tao Zhang
- Agroscope, Division of Agroecology and Environment, Reckenholzstrasse 191, CH-8046 Zürich, Switzerland.,Institute of Grassland Sciences, Northeast Normal University, Key Laboratory for Vegetation Ecology, Ministry of Education, 130024 Changchun, China
| | - Raphaël Wittwer
- Agroscope, Division of Agroecology and Environment, Reckenholzstrasse 191, CH-8046 Zürich, Switzerland
| | | | - Theo H M Smits
- Environmental Genomics and Systems Biology Research Group, Institute for Natural Resource Sciences, Zurich University of Applied Sciences (ZHAW), CH-8820 Wädenswil, Switzerland
| | - Klaus Schlaeppi
- Agroscope, Division of Agroecology and Environment, Reckenholzstrasse 191, CH-8046 Zürich, Switzerland
| | - Christoph Keel
- University of Lausanne, Department of Fundamental Microbiology, Quartier UNIL-Sorge, CH-1015 Lausanne, Switzerland
| | - Monika Maurhofer
- ETH Zürich, Plant Pathology, Institute of Integrative Biology, Universitätsstrasse 2, 8092 Zürich, Switzerland
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Kristl J, Sem V, Kristl M, Kramberger B, Lešnik M. Effects of integrated and organic pest management with copper and copper-free preparations on tomato (Lycopersicum esculentum Mill.) fruit yield, disease incidence and quality. Food Chem 2019; 278:342-349. [PMID: 30583381 DOI: 10.1016/j.foodchem.2018.11.079] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/20/2018] [Revised: 11/10/2018] [Accepted: 11/13/2018] [Indexed: 11/18/2022]
Abstract
The present study investigates the effect of exclusion of copper preparations from spray programs for disease control in integrated and organic tomato production systems on disease incidence, yield and fruit vitamin C, α-tocopherol and carotenoids content for Monroe, Optima and Paki cultivars. Open field trials were conducted in a randomized block system with four repetitions over two years. Treatment for plant disease control comprised four spraying programs, two within each production system. Yields were significantly affected by cultivar, pest management system and their interaction. Copper-free integrated and organic spraying programs were almost as effective in disease control as standard treatments which included copper preparations. The spraying program significantly affected the contents of vitamin C, α-tocopherol, phytoene, and β-carotene in fruits; however, the effect was cultivar related. The lycopene contents appeared to be unaffected by the spraying program or growing system.
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Affiliation(s)
- Janja Kristl
- University of Maribor, Faculty of Agriculture and Life Sciences, Pivola 10, 2311 Hoce, Slovenia.
| | - Vilma Sem
- University of Maribor, Faculty of Agriculture and Life Sciences, Pivola 10, 2311 Hoce, Slovenia
| | - Matjaž Kristl
- University of Maribor, Faculty of Chemistry and Chemical Engineering, Smetanova ulica 17, 2000 Maribor, Slovenia
| | - Branko Kramberger
- University of Maribor, Faculty of Agriculture and Life Sciences, Pivola 10, 2311 Hoce, Slovenia
| | - Mario Lešnik
- University of Maribor, Faculty of Agriculture and Life Sciences, Pivola 10, 2311 Hoce, Slovenia
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35
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Gao P, Nan ZB, Christensen MJ, Barbetti MJ, Duan TY, Liu QT, Meng FJ, Huang JF. Factors Influencing Rust (Melampsora apocyni) Intensity on Cultivated and Wild Apocynum venetum in Altay Prefecture, China. PHYTOPATHOLOGY 2019; 109:593-606. [PMID: 30307801 DOI: 10.1094/phyto-04-18-0145-r] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/08/2023]
Abstract
Rust (Melampsora apocyni) on Apocynum venetum is the major constraint to the commercial development of this medicinal herb. To determine the factors influencing rust intensity (maximum disease index [DImax]), rust was investigated from 2011 to 2015 in both cultivated and wild A. venetum plants. Partial least squares path modeling (PLS-PM) was used to analyze the paths and extent of the factors related to pathogen, environment, and host that affect rust intensity. DImax exhibited considerable variations across years and study sites, with variations linked to various factors fostering disease development. PLS-PM explained 80.0 and 70.1% of variations in DImax in cultivated and wild plants, respectively. Precipitation was the key factor determining DImax in both cultivated and wild plants (path coefficient [PC] = 0.313 and 0.544, respectively). In addition, the topsoil water content in cultivated plants and the total vegetation coverage in wild plants were also critical determinants of DImax via their effects on the microclimatic factor (contribution coefficients [CC] = 0.681 and 0.989, respectively; PC = 0.831 and 0.231, respectively). In both cultivated and wild plants, host factors were mainly dominated by A. venetum density (CC = 0.989 and 0.894, respectively), and their effect on DImax via the microclimatic factor (PC = 0.841 and 0.862, respectively) exceeded that via the inoculum factor (PC = 0.705 and 0.130, respectively). However, the indirect effects led to DImax variation, while the dilution effect on host (CC = 0.154) from weed in wild plants led to the indirect effect size in wild plants of 0.200, which was lower than -0.699 in cultivated plants.
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Affiliation(s)
- P Gao
- 1 State Key Laboratory of Grassland Agro-Ecosystems, Lanzhou University, Lanzhou 730020, P. R. China
- 2 College of Animal Science and Veterinary Medicine, Shanxi Agricultural University, Taigu, Shanxi Province 030801, P. R. China
| | - Z B Nan
- 1 State Key Laboratory of Grassland Agro-Ecosystems, Lanzhou University, Lanzhou 730020, P. R. China
- 3 Key Laboratory of Grassland Livestock Industry Innovation, Ministry of Agriculture, Lanzhou University
- 4 College of Pastoral Agricultural Science and Technology, Lanzhou University
| | - M J Christensen
- 1 State Key Laboratory of Grassland Agro-Ecosystems, Lanzhou University, Lanzhou 730020, P. R. China
- 4 College of Pastoral Agricultural Science and Technology, Lanzhou University
| | - M J Barbetti
- 5 School of Agriculture and Environment and the UWA Institute of Agriculture, Faculty of Science, The University of Western Australia, Crawley, WA 6009, Australia; and
| | - T Y Duan
- 1 State Key Laboratory of Grassland Agro-Ecosystems, Lanzhou University, Lanzhou 730020, P. R. China
- 3 Key Laboratory of Grassland Livestock Industry Innovation, Ministry of Agriculture, Lanzhou University
- 4 College of Pastoral Agricultural Science and Technology, Lanzhou University
| | - Q T Liu
- 6 Altay Gaubau Tea Co., Ltd., Altay 836500, P. R. China
| | - F J Meng
- 6 Altay Gaubau Tea Co., Ltd., Altay 836500, P. R. China
| | - J F Huang
- 6 Altay Gaubau Tea Co., Ltd., Altay 836500, P. R. China
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36
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Li H, Cai X, Gong J, Xu T, Ding GC, Li J. Long-Term Organic Farming Manipulated Rhizospheric Microbiome and Bacillus Antagonism Against Pepper Blight ( Phytophthora capsici). Front Microbiol 2019; 10:342. [PMID: 30873141 PMCID: PMC6401385 DOI: 10.3389/fmicb.2019.00342] [Citation(s) in RCA: 29] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/02/2018] [Accepted: 02/08/2019] [Indexed: 12/12/2022] Open
Abstract
Soil-borne diseases are often less severe in organic farms, possibly because of the recruitment of beneficial microorganisms by crops. Here, the suppressiveness of organic, integrated, and conventionally managed soils to pepper blight (Phytophthora capsici) was studied in growth chamber experiments. Disease incidence was 41.3 and 34.1% lower in the soil from an organic farming system than in either the soil from the integrated or from the conventional farming systems, respectively. Beta-diversity of rhizospheric microbial communities differed among treatments, with enrichment of Bacillus, Sporosarcina, Acidobacteria Gp5, Gp6, Gp22, and Ignavibacterium by the organic soil. Cultivation-dependent analysis indicated that 50.3% of in vitro antagonists of P. capsici isolated from the rhizosphere of healthy peppers were affiliated to Bacillus. An integration of in vitro antagonists and bacterial diversity analyses indicated that Bacillus antagonists were higher in the rhizosphere of pepper treated by the organic soil. A microbial consortium of 18 in vitro Bacillus antagonists significantly increased the suppressiveness of soil from the integrated farming system against pepper blight. Overall, the soil microbiome under the long-term organic farming system was more suppressive to pepper blight, possibly owing to Bacillus antagonism in the rhizosphere. This study provided insights into microbiome management for disease suppression under greenhouse conditions.
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Affiliation(s)
- Huixiu Li
- College of Resources and Environmental Sciences, China Agricultural University, Beijing, China
| | - Xiaoxu Cai
- College of Resources and Environmental Sciences, China Agricultural University, Beijing, China
| | - Jingyang Gong
- College of Resources and Environmental Sciences, China Agricultural University, Beijing, China
| | - Ting Xu
- College of Resources and Environmental Sciences, China Agricultural University, Beijing, China
| | - Guo-chun Ding
- College of Resources and Environmental Sciences, China Agricultural University, Beijing, China
- Beijing Key Laboratory of Biodiversity and Organic Farming, Beijing, China
| | - Ji Li
- College of Resources and Environmental Sciences, China Agricultural University, Beijing, China
- Beijing Key Laboratory of Biodiversity and Organic Farming, Beijing, China
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Wang MY, Wang F, Hao GF, Yang GF. FungiPAD: A Free Web Tool for Compound Property Evaluation and Fungicide-Likeness Analysis. JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY 2019; 67:1823-1830. [PMID: 30677302 DOI: 10.1021/acs.jafc.8b06596] [Citation(s) in RCA: 35] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/09/2023]
Abstract
The increasing prevalence of fungal diseases, continual development of resistance, and stringent environmental regulations have revealed an urgent need to develop more selective, safer, resistance-breaking, and cost-effective fungicides. However, most new fungicidal lead compounds fail in their late stages of development as a result of poor solubility or permeability, meaning that they have suboptimal physicochemical properties. Hence, the exploration of advanced technologies for compound "fungicide-likeness" assessment might overcome these obstacles and bring more chemical entities to market. FungiPAD ( http://chemyang.ccnu.edu.cn/ccb/database/FungiPAD/ ) is a free platform employed to predict physicochemical properties, bioavailability, and fungicide-likeness swiftly and powerfully using comprehensive approaches, such as physicochemical radars and qualitative and quantitative analyses. This platform contains data for over 16 000 physicochemical descriptors and the results of 2200 qualitative and 1100 quantitative analyses of marketed fungicides and provides comprehensive fungicide-likeness analysis for different compounds. The user-friendly interface facilitates interpretation and manipulation by non-computational scientists in support of fungicide discovery.
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Affiliation(s)
| | | | - Ge-Fei Hao
- State Key Laboratory Breeding Base of Green Pesticide and Agricultural Bioengineering, Key Laboratory of Green Pesticide and Agricultural Bioengineering, Ministry of Education, Research and Development Center for Fine Chemicals , Guizhou University , Guiyang , Guizhou 550025 , People's Republic of China
| | - Guang-Fu Yang
- Collaborative Innovation Center of Chemical Science and Engineering , Tianjin 300072 , People's Republic of China
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Culturable endophytic fungal communities associated with plants in organic and conventional farming systems and their effects on plant growth. Sci Rep 2019; 9:1669. [PMID: 30737459 PMCID: PMC6368545 DOI: 10.1038/s41598-018-38230-x] [Citation(s) in RCA: 34] [Impact Index Per Article: 6.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/18/2018] [Accepted: 12/16/2018] [Indexed: 01/03/2023] Open
Abstract
As compared to organic farming system, conventional farming system relies on higher inputs of synthetic agrochemicals, which may reduce the abundance, diversity, and beneficial effects of plant endophytic fungal communities. This study compares the diversity and abundance of culturable endophytic fungal communities associated with four plant species –corn, tomato, pepper, and watermelon grown in separate organic and conventional fields. In all, 740 fungal isolates were identified, of which 550 were from the organic fields and 190 from the conventional ones. These fungal isolates were grouped into eight orders and 22 species, with the two most abundant species being Trichoderma sp. and Pichia guilliermondi. The fungal species diversity and abundance were both significantly higher in the organic than in the conventional fields. All the isolated endophytic fungi improved tomato plants’ shoot growth and biomass significantly, as compared with the water control. Six fungal isolates also exhibited activity that enhanced tomato fruit yields. These results suggest that these endophytic fungi might be a considerable boost to sustainable agricultural production, while also reducing the agricultural application of chemicals and thus benefiting the environment and human health.
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Shi W, Li M, Wei G, Tian R, Li C, Wang B, Lin R, Shi C, Chi X, Zhou B, Gao Z. The occurrence of potato common scab correlates with the community composition and function of the geocaulosphere soil microbiome. MICROBIOME 2019; 7:14. [PMID: 30709420 PMCID: PMC6359780 DOI: 10.1186/s40168-019-0629-2] [Citation(s) in RCA: 85] [Impact Index Per Article: 17.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/14/2018] [Accepted: 01/17/2019] [Indexed: 05/17/2023]
Abstract
BACKGROUND Soil microorganisms can mediate the occurrence of plant diseases. Potato common scab (CS) is a refractory disease caused by pathogenic Streptomyces that occurs worldwide, but little is known about the interactions between CS and the soil microbiome. In this study, four soil-root system compartments (geocaulosphere soil (GS), rhizosphere soil (RS), root-zone soil (ZS), and furrow soil (FS)) were analyzed for potato plants with naturally high (H) and low (L) scab severity levels. We aimed to determine the composition and putative function of the soil microbiome associated with potato CS. RESULTS The copy numbers of the scab phytotoxin biosynthetic gene txtAB and the bacterial 16S rRNA gene as well as the diversity and composition of each of the four soil-root system compartments were examined; GS was the only compartment that exhibited significant differences between the H and L groups. Compared to the H group, the L group exhibited a lower txtAB gene copy number, lower bacterial 16S copy number, higher diversity, higher co-occurrence network complexity, and higher community function similarity within the GS microbiome. The community composition and function of the GS samples were further revealed by shotgun metagenomic sequencing. Variovorax, Stenotrophomonas, and Agrobacterium were the most abundant genera that were significantly and positively correlated with the scab severity level, estimated absolute abundance (EAA) of pathogenic Streptomyces, and txtAB gene copy number. In contrast, Geobacillus, Curtobacterium, and unclassified Geodermatophilaceae were significantly negatively correlated with these three parameters. Compared to the function profiles in the L group, several genes involved in "ABC transporters," the "bacterial secretion system," "quorum sensing (QS)," "nitrogen metabolism," and some metabolism by cytochrome P450 were enriched in the H group. In contrast, some antibiotic biosynthesis pathways were enriched in the L group. Based on the differences in community composition and function, a simple model was proposed to explain the putative relationships between the soil microbiome and CS occurrence. CONCLUSIONS The GS microbiome was closely associated with CS severity in the soil-root system, and the occurrence of CS was accompanied by changes in community composition and function. The differential functions provide new clues to elucidate the mechanism underlying the interaction between CS occurrence and the soil microbiome, and varying community compositions provide novel insights into CS occurrence.
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Affiliation(s)
- Wencong Shi
- State Key Laboratory of Crop Biology, Shandong Agricultural University, Tai'an, 271018, China
- College of Life Sciences, Shandong Agricultural University, Tai'an, 271018, China
| | - Mingcong Li
- State Key Laboratory of Crop Biology, Shandong Agricultural University, Tai'an, 271018, China
- College of Life Sciences, Shandong Agricultural University, Tai'an, 271018, China
| | - Guangshan Wei
- Key Laboratory of Marine Genetic Resources, Third Institute of Oceanography, SOA, Xiamen, 361005, China
- South China Sea Resource Exploitation and Protection Collaborative Innovation Center (SCS-REPIC), Sun Yat-Sen University, Guangzhou, 510275, China
| | - Renmao Tian
- Department of Botany and Microbiology, Institute for Environmental Genomics, University of Oklahoma, Norman, USA
| | - Cuiping Li
- State Key Laboratory of Crop Biology, Shandong Agricultural University, Tai'an, 271018, China
- College of Life Sciences, Shandong Agricultural University, Tai'an, 271018, China
| | - Bing Wang
- College of Life Sciences, Shandong Agricultural University, Tai'an, 271018, China
- National Engineering Laboratory for Efficient Utilization of Soil and Fertilizer Resources, Tai'an, 271018, China
| | - Rongshan Lin
- College of Life Sciences, Shandong Agricultural University, Tai'an, 271018, China
- National Engineering Laboratory for Efficient Utilization of Soil and Fertilizer Resources, Tai'an, 271018, China
| | - Chunyu Shi
- State Key Laboratory of Crop Biology, Shandong Agricultural University, Tai'an, 271018, China
- College of Agronomy, Shandong Agricultural University, Tai'an, 271018, China
| | - Xiuli Chi
- Plant Protection Station, Jiaozhou Agricultural Bureau, Qingdao, 266300, China
| | - Bo Zhou
- College of Life Sciences, Shandong Agricultural University, Tai'an, 271018, China.
- National Engineering Laboratory for Efficient Utilization of Soil and Fertilizer Resources, Tai'an, 271018, China.
| | - Zheng Gao
- State Key Laboratory of Crop Biology, Shandong Agricultural University, Tai'an, 271018, China.
- College of Life Sciences, Shandong Agricultural University, Tai'an, 271018, China.
- Department of Botany and Microbiology, Institute for Environmental Genomics, University of Oklahoma, Norman, USA.
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Bonanomi G, Lorito M, Vinale F, Woo SL. Organic Amendments, Beneficial Microbes, and Soil Microbiota: Toward a Unified Framework for Disease Suppression. ANNUAL REVIEW OF PHYTOPATHOLOGY 2018; 56:1-20. [PMID: 29768137 DOI: 10.1146/annurev-phyto-080615-100046] [Citation(s) in RCA: 91] [Impact Index Per Article: 15.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/20/2023]
Abstract
Organic amendments (OAs) and soilborne biocontrol agents or beneficial microbes (BMs) have been extensively studied and applied worldwide in most agriculturally important plant species. However, poor integration of research and technical approaches has limited the development of effective disease management practices based on the combination of these two bio-based strategies. Insights into the importance of the plant-associated microbiome for crop productivity, which can be modified or modulated by introducing OAs and/or BMs, are providing novel opportunities to achieve the goal of long-term disease control. This review discusses novel ways of functionally characterizing OAs and how they may be used to promote the effect of added biocontrol agents and/or beneficial soil microbiota to support natural suppressiveness of plant pathogens.
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Affiliation(s)
- Giuliano Bonanomi
- Department of Agricultural Sciences, University of Naples Federico II, 80055 Portici (NA), Italy;
- Task Force on Microbiome Studies, University of Naples Federico II, 80131 Napoli (NA), Italy
| | - Matteo Lorito
- Department of Agricultural Sciences, University of Naples Federico II, 80055 Portici (NA), Italy;
- Institute for Sustainable Plant Protection, National Research Council (IPSP-CNR), 80055 Portici (NA), Italy
- Task Force on Microbiome Studies, University of Naples Federico II, 80131 Napoli (NA), Italy
| | - Francesco Vinale
- Department of Agricultural Sciences, University of Naples Federico II, 80055 Portici (NA), Italy;
- Institute for Sustainable Plant Protection, National Research Council (IPSP-CNR), 80055 Portici (NA), Italy
| | - Sheridan L Woo
- Institute for Sustainable Plant Protection, National Research Council (IPSP-CNR), 80055 Portici (NA), Italy
- Department of Pharmacy, University of Naples Federico II, 80131 Napoli (NA), Italy
- Task Force on Microbiome Studies, University of Naples Federico II, 80131 Napoli (NA), Italy
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Nuñez AMP, Rodríguez GAA, Monteiro FP, Faria AF, Silva JCP, Monteiro ACA, Carvalho CV, Gomes LAA, Souza RM, de Souza JT, Medeiros FHV. Bio-based products control black rot (Xanthomonas campestris pv. campestris) and increase the nutraceutical and antioxidant components in kale. Sci Rep 2018; 8:10199. [PMID: 29977077 PMCID: PMC6033922 DOI: 10.1038/s41598-018-28086-6] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/11/2018] [Accepted: 06/13/2018] [Indexed: 11/18/2022] Open
Abstract
Black rot of crucifers, (Xanthomonas campestris pv. campestris) is the principal yield-limiting and destructive pathogen of cruciferous crop worldwide. In order to validate a bio-based control alternative for this disease, whey, lime sulfur, biofertilizer, Bordeaux mixture or raw milk were applied to kale (Brassica oleracea var. acephala) plants. The disease control was achieved by most of the tested products. Milk-based products (raw milk and whey) and biofertilizer reduced the severity by 44 and 56% in the field. Antioxidants, crude fibber, crude protein and lipid contents and kale yield were verified in the five treatments on the leaves with and without X. campestris pv. campestris inoculation. In the absence of the pathogen (non-inoculated), lime sulfur and Bordeaux mixture improved plant nutritional value compared to organic treatments, nevertheless milk-based products and biofertilizer improved the evaluated variables more than the control. However, on leaves inoculated with X. campestris pv. campestris raw milk increased antioxidant activity, crude protein and fiber contents, whereas biofertilizer increased kale yield, lipid and antioxidant contents. Milk-based products and biofertilizer were further evaluated in greenhouse trials to determinate the activity of defense-related enzymes and lignin content. Biofertilizer treatment resulted in increased phenylalanine ammonia lyase, catalase, peroxidase activities and lignin content. Hence, the application of milk-based products and biofertilizer are promising to control black rot of crucifers and also improves food quality by boosting nutritional values and antioxidant activity.
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Affiliation(s)
- Andrés M P Nuñez
- Department of Plant Pathology, Universidade Federal de Lavras, 37200-000, Lavras, Minas Gerais, Brazil
| | - Gabriel A A Rodríguez
- Department of Plant Pathology, Universidade Federal de Lavras, 37200-000, Lavras, Minas Gerais, Brazil.,Universidad de San Carlos, Avenida 11, Guatemala, 01012, Guatemala
| | - Fernando P Monteiro
- Department of Plant Pathology, Universidade Federal de Lavras, 37200-000, Lavras, Minas Gerais, Brazil
| | - Amanda F Faria
- Department of Plant Pathology, Universidade Federal de Lavras, 37200-000, Lavras, Minas Gerais, Brazil
| | - Julio C P Silva
- Department of Plant Pathology, Universidade Federal de Lavras, 37200-000, Lavras, Minas Gerais, Brazil
| | - Ana C A Monteiro
- Department of Plant Pathology, Universidade Federal de Lavras, 37200-000, Lavras, Minas Gerais, Brazil
| | - Carolina V Carvalho
- Department of Nutrition, Universidade, Federal de Lavras, 37200-000, Lavras, Minas Gerais, Brazil
| | - Luiz A A Gomes
- Department of Agriculture, Universidade Federal de Lavras, 37200-000, Lavras, Minas Gerais, Brazil
| | - Ricardo M Souza
- Department of Plant Pathology, Universidade Federal de Lavras, 37200-000, Lavras, Minas Gerais, Brazil
| | - Jorge T de Souza
- Department of Plant Pathology, Universidade Federal de Lavras, 37200-000, Lavras, Minas Gerais, Brazil
| | - Flávio H V Medeiros
- Department of Plant Pathology, Universidade Federal de Lavras, 37200-000, Lavras, Minas Gerais, Brazil.
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A Sustainable Agricultural Future Relies on the Transition to Organic Agroecological Pest Management. SUSTAINABILITY 2018. [DOI: 10.3390/su10062023] [Citation(s) in RCA: 36] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/01/2023]
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43
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Cao Y, Gao Y, Qi Y, Li J. Biochar-enhanced composts reduce the potential leaching of nutrients and heavy metals and suppress plant-parasitic nematodes in excessively fertilized cucumber soils. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2018; 25:7589-7599. [PMID: 29282668 DOI: 10.1007/s11356-017-1061-4] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/21/2017] [Accepted: 12/18/2017] [Indexed: 05/22/2023]
Abstract
Excessive fertilization is a common agricultural practice that has largely reduced soil nutrient retention capacity and led to nutrient leaching in China. To reduce nutrient leaching, in this study, we evaluated the application of biochar, compost, and biochar-compost on soil properties, leaching water quality, and cucumber plant growth in soils with different nutrient levels. In general, the concentrations of nutrients and heavy metals in leaching water were higher under high-nutrient conditions than under low-nutrient conditions. Both biochar and compost efficiently enhanced soil cation exchange capacity (CEC), water holding capacity (WHC), and microbial biomass carbon (MBC), nitrogen (MBN), and phosphorus (MBP), reduced the potential leaching of nutrients and heavy metals, and improved plant growth. The efficiency of biochar and compost in soil CEC, WHC, MBC, MBN, and MBP and plant growth was enhanced when applied jointly. In addition, biochar and biochar-enhanced compost efficiently suppressed plant-parasitic nematode infestation in a soil with high levels of both N and P. Our results suggest that biochar-enhanced compost can reduce the potential environmental risks in excessively fertilized vegetable soils.
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Affiliation(s)
- Yune Cao
- College of Agriculture, Ningxia University, 489 Helanshan Xilu, Yinchuan, 750021, China.
| | - Yanming Gao
- College of Agriculture, Ningxia University, 489 Helanshan Xilu, Yinchuan, 750021, China
| | - Yanbin Qi
- College of Resources and Environment, North West Agriculture and Forestry University, 3 Taicheng Lu, Yangling, 712100, China
| | - Jianshe Li
- College of Agriculture, Ningxia University, 489 Helanshan Xilu, Yinchuan, 750021, China
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Van Bruggen AHC, He MM, Shin K, Mai V, Jeong KC, Finckh MR, Morris JG. Environmental and health effects of the herbicide glyphosate. THE SCIENCE OF THE TOTAL ENVIRONMENT 2018; 616-617:255-268. [PMID: 29117584 DOI: 10.1016/j.scitotenv.2017.10.309] [Citation(s) in RCA: 387] [Impact Index Per Article: 64.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/07/2017] [Revised: 10/29/2017] [Accepted: 10/29/2017] [Indexed: 05/28/2023]
Abstract
The herbicide glyphosate, N-(phosphonomethyl) glycine, has been used extensively in the past 40years, under the assumption that side effects were minimal. However, in recent years, concerns have increased worldwide about the potential wide ranging direct and indirect health effects of the large scale use of glyphosate. In 2015, the World Health Organization reclassified glyphosate as probably carcinogenic to humans. A detailed overview is given of the scientific literature on the movement and residues of glyphosate and its breakdown product aminomethyl phosphonic acid (AMPA) in soil and water, their toxicity to macro- and microorganisms, their effects on microbial compositions and potential indirect effects on plant, animal and human health. Although the acute toxic effects of glyphosate and AMPA on mammals are low, there are animal data raising the possibility of health effects associated with chronic, ultra-low doses related to accumulation of these compounds in the environment. Intensive glyphosate use has led to the selection of glyphosate-resistant weeds and microorganisms. Shifts in microbial compositions due to selective pressure by glyphosate may have contributed to the proliferation of plant and animal pathogens. Research on a link between glyphosate and antibiotic resistance is still scarce but we hypothesize that the selection pressure for glyphosate-resistance in bacteria could lead to shifts in microbiome composition and increases in antibiotic resistance to clinically important antimicrobial agents. We recommend interdisciplinary research on the associations between low level chronic glyphosate exposure, distortions in microbial communities, expansion of antibiotic resistance and the emergence of animal, human and plant diseases. Independent research is needed to revisit the tolerance thresholds for glyphosate residues in water, food and animal feed taking all possible health risks into account.
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Affiliation(s)
- A H C Van Bruggen
- Emerging Pathogens Institute, University of Florida, Gainesville, FL 32611, USA; Department of Plant Pathology, IFAS, University of Florida, Gainesville, FL 32610, USA.
| | - M M He
- Emerging Pathogens Institute, University of Florida, Gainesville, FL 32611, USA; Department of Life and Environment Science, Hangzhou Normal University, Zhejiang 310036, China
| | - K Shin
- Emerging Pathogens Institute, University of Florida, Gainesville, FL 32611, USA; Department of Plant Pathology, IFAS, University of Florida, Gainesville, FL 32610, USA
| | - V Mai
- Emerging Pathogens Institute, University of Florida, Gainesville, FL 32611, USA
| | - K C Jeong
- Emerging Pathogens Institute, University of Florida, Gainesville, FL 32611, USA
| | - M R Finckh
- Faculty of Organic Agricultural Sciences, Ecological Plant Protection, University of Kassel, 37213 Witzenhausen, Germany
| | - J G Morris
- Emerging Pathogens Institute, University of Florida, Gainesville, FL 32611, USA; Department of Medicine, College of Medicine, University of Florida, Gainesville, FL 32610, USA
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Sekine R, Marzouk E, Khaksar M, Scheckel KG, Stegemeier JP, Lowry GV, Donner E, Lombi E. Aging of Dissolved Copper and Copper-based Nanoparticles in Five Different Soils: Short-term Kinetics vs. Long-term Fate. JOURNAL OF ENVIRONMENTAL QUALITY 2017; 46:1198-1205. [PMID: 29293823 PMCID: PMC5868742 DOI: 10.2134/jeq2016.12.0485] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/12/2023]
Abstract
With the growing availability and use of copper-based nanomaterials (Cu-NMs), there is increasing concern regarding their release and potential impact on the environment. In this study, the short-term (≤5 d) aging profile and the long-term (135 d) speciation of dissolved Cu, copper oxide, and copper sulfide nanoparticles (CuO-NPs and CuS-NPs) were investigated in five different soils using X-ray absorption spectroscopy. Soil pH was found to strongly influence the short-term chemistry of the Cu-NMs added at 100 mg kg above background. Low pH soils promoted rapid dissolution of CuO-NPs that effectively aligned their behavior to that of dissolved Cu within 3 d. In higher pH soils, CuO-NPs persisted longer due to slower dissolution in the soil and resulted in contrasting short-term speciation compared with dissolved Cu, which formed copper hydroxides and carbonates that were reflective of the soil chemistry. Organic matter appeared to slow the dissolution process, but in the long term, the speciation of Cu added as dissolved Cu, CuO-NPs, and CuS-NPs were found to be same for each soil. The results imply that, in the short term, Cu-NMs may exhibit unique behavior in alkaline soils compared with their conventional forms (e.g., in the event of an adverse leaching event), but in the long term (≥135 d), their fates are dictated by the soil properties, are independent of the initial Cu form, and are likely to present minimal risk of nanospecific Cu-NM impact in the soil environment for the concentration studied here.
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Affiliation(s)
- Ryo Sekine
- Future Industries Institute, University of South Australia, Building X, Mawson Lakes Campus, SA 5095, Australia
- Centre for Ecology and Hydrology, Maclean Building, Benson Lane, Crowmarsh Gifford, Wallingford, Oxfordshire, OX10 8BB, United Kingdom
| | - Ezzat Marzouk
- Future Industries Institute, University of South Australia, Building X, Mawson Lakes Campus, SA 5095, Australia
- Division of Soil and Water Sciences, Faculty of Environmental Agricultural Sciences, Arish University, North Sinai 45516, Egypt
| | - Maryam Khaksar
- Future Industries Institute, University of South Australia, Building X, Mawson Lakes Campus, SA 5095, Australia
| | - Kirk G. Scheckel
- National Risk Management Research Laboratory, US Environmental Protection Agency, 5995 Centre Hill Avenue, Cincinnati, Ohio 45224, USA
| | - John P. Stegemeier
- Department of Civil and Environmental Engineering, Carnegie Mellon University, 119 Porter Hall, 5000 Forbes Avenue, Pittsburgh, PA, 15213, USA
| | - Gregory. V. Lowry
- Department of Civil and Environmental Engineering, Carnegie Mellon University, 119 Porter Hall, 5000 Forbes Avenue, Pittsburgh, PA, 15213, USA
| | - Erica Donner
- Future Industries Institute, University of South Australia, Building X, Mawson Lakes Campus, SA 5095, Australia
| | - Enzo Lombi
- Future Industries Institute, University of South Australia, Building X, Mawson Lakes Campus, SA 5095, Australia
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Agroecology and Ecological Intensification. A Discussion from a Metabolic Point of View. SUSTAINABILITY 2017. [DOI: 10.3390/su9010086] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
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47
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Concepts and Strategies of Organic Plant Breeding in Light of Novel Breeding Techniques. SUSTAINABILITY 2016. [DOI: 10.3390/su9010018] [Citation(s) in RCA: 27] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/20/2023]
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