Numerical dispersion compensation for Partial Coherence Interferometry and Optical Coherence Tomography

Physical compensation method for dispersion of multiple materials in swept source optical coherence tomography

An ophthalmic swept source-optical coherence tomography (SS-OCT) system based on a high-speed scanning laser at 1060 nm with a scanning rate of 100 KHz is constructed. Since the sample arm of the interferometer is comprised of multiple glass materials, the ensuing dispersion severely degrades imaging quality. In this article, second-order dispersion simulation analysis for various materials was performed first, and dispersion equilibrium was implemented utilizing physical compensation methods. After dispersion compensation, an imaging depth in air of 4.013 mm was achieved in model eye experiments, and signal-to-noise ratio was enhanced by 11.6%, with a value of 53.8 dB. In vivo imaging of the human retina was performed to demonstrate structurally distinguishable retinal images, characterized by an axial resolution improvement of 19.8%, with a value of 7.7 μm close to the theoretical value of 7.5 μm. The proposed physical dispersion compensation method enhances imaging performance in SS-OCT systems, enabling visualization of several low scattering mediums.

Live 4D-OCT denoising with self-supervised deep learning

By providing three-dimensional visualization of tissues and instruments at high resolution, live volumetric optical coherence tomography (4D-OCT) has the potential to revolutionize ophthalmic surgery. However, the necessary imaging speed is accompanied by increased noise levels. A high data rate and the requirement for minimal latency impose major limitations for real-time noise reduction. In this work, we propose a low complexity neural network for denoising, directly incorporated into the image reconstruction pipeline of a microscope-integrated 4D-OCT prototype with an A-scan rate of 1.2 MHz. For this purpose, we trained a blind-spot network on unpaired OCT images using a self-supervised learning approach. With an optimized U-Net, only a few milliseconds of additional latency were introduced. Simultaneously, these architectural adaptations improved the numerical denoising performance compared to the basic setup, outperforming non-local filtering algorithms. Layers and edges of anatomical structures in B-scans were better preserved than with Gaussian filtering despite comparable processing time. By comparing scenes with and without denoising employed, we show that neural networks can be used to improve visual appearance of volumetric renderings in real time. Enhancing the rendering quality is an important step for the clinical acceptance and translation of 4D-OCT as an intra-surgical guidance tool.

Wide-field sensorless adaptive optics swept-source optical coherence tomographic angiography in rodents

In this study, we present a sensorless adaptive optics swept-source optical coherence tomographic angiography (sAO-SS-OCTA) imaging system for mice. Real-time graphics processing unit (GPU)-based OCTA image acquisition and processing software were applied to guide wavefront correction using a deformable mirror based on signal strength index (SSI) from both OCT and OCTA images. High-resolution OCTA images with aberrations corrected and contrast enhanced were successfully acquired. Fifty-degree field of view high-resolution montaged OCTA images were also acquired.

ADC-Net: An Open-Source Deep Learning Network for Automated Dispersion Compensation in Optical Coherence Tomography

Chromatic dispersion is a common problem to degrade the system resolution in optical coherence tomography (OCT). This study is to develop a deep learning network for automated dispersion compensation (ADC-Net) in OCT. The ADC-Net is based on a modified UNet architecture which employs an encoder-decoder pipeline. The input section encompasses partially compensated OCT B-scans with individual retinal layers optimized. Corresponding output is a fully compensated OCT B-scan with all retinal layers optimized. Two numeric parameters, i.e., peak signal to noise ratio (PSNR) and structural similarity index metric computed at multiple scales (MS-SSIM), were used for objective assessment of the ADC-Net performance and optimal values of 29.95 ± 2.52 dB and 0.97 ± 0.014 were obtained respectively. Comparative analysis of training models, including single, three, five, seven and nine input channels were implemented. The mode with five-input channels was observed to be optimal for ADC-Net training to achieve robust dispersion compensation in OCT.

Intensity correlation OCT is a classical mimic of quantum OCT providing up to twofold resolution improvement

Quantum Optical Coherence Tomography (Q-OCT) uses quantum properties of light to provide several advantages over its classical counterpart, OCT: it achieves a twice better axial resolution with the same spectral bandwidth and it is immune to even orders of dispersion. Since these features are very sought-after in OCT imaging, many hardware and software techniques have been created to mimic the quantum behaviour of light and achieve these features using traditional OCT systems. The most recent, purely algorithmic scheme—an improved version of Intensity Correlation Spectral Domain OCT named ICA-SD-OCT—showed even-order dispersion cancellation and reduction of artefacts. The true capabilities of this method were unfortunately severely undermined, both in terms of its relation to Q-OCT and its main performance parameters. In this work, we provide experimental demonstrations as well as numerical and analytical arguments to show that ICA-SD-OCT is a true classical equivalent of Q-OCT, more specifically its Fourier domain version, and therefore it enables a true two-fold axial resolution improvement. We believe that clarification of all the misconceptions about this very promising algorithm will highlight the great value of this method for OCT and consequently lead to its practical applications for resolution- and quality-enhanced OCT imaging.

Phase sensitive low-coherence interferometry using microwave photonics

We report on a low-coherence interferometer based on Microwave Photonics (MWP) which allows, for the first time to the best of our knowledge, stable determination of the interferogram's phase. The interferometer is built on suppressed carrier, double-sideband modulation, dispersive propagation in a chirped fiber Bragg grating, demodulation by electro-optical frequency down-conversion, and suitable signal processing techniques to account for modulation impairments. Taking as a reference a direct normalization of the link's microwave response, the system retrieves high-resolution interferograms, both in amplitude and phase and free from distortion induced by higher-order dispersion, in an optical path difference of 16.3 mm, surpassing previously reported values based on MWP implementations. We present representative applications targeted to the characterization of C-band sources and components, such as direct analysis of interferograms with 5.5 fs temporal resolution, Fourier-transform spectroscopy with 14 GHz spectral resolution, and optical low-coherence reflectrometry of the impulse response's amplitude of fiber Bragg gratings with 0.55 μm spatial resolution.

Kilohertz retinal FF-SS-OCT and flood imaging with hardware-based adaptive optics

A retinal imaging system was designed for full-field (FF) swept-source (SS) optical coherence tomography (OCT) with cellular resolution. The system incorporates a real-time adaptive optics (AO) subsystem and a very high-speed CMOS sensor, and is capable of acquiring volumetric images of the retina at rates up to 1 kHz. While digital aberration correction (DAC) is an attractive potential alternative to AO, it has not yet been shown to provide resolution allowing visualization of cones in the fovea, where early detection of functional deficits is most critical. Here we demonstrate that FF-SS-OCT with hardware AO permits resolution of foveal cones, imaged at eccentricities of 1° and 2°, with volume rates adequate to measure light-evoked changes in photoreceptors. With the reference arm blocked, the system can operate as a kilohertz AO flood illumination fundus camera with adjustable temporal coherence and is expected to allow measurement of light-evoked changes caused by common path interference in photoreceptor outer segments (OS). In this paper, we describe the system's optical design, characterize its performance, and demonstrate its ability to produce images of the human photoreceptor mosaic.

Fourier domain quantum optical coherence tomography

Quantum optical coherence tomography (Q-OCT) is the non-classical counterpart of optical coherence tomography (OCT), a high-resolution 3D imaging technique based on white-light interferometry. Because Q-OCT uses a source of frequency-entangled photon pairs, not only is the axial resolution not affected by dispersion mismatch in the interferometer but is also inherently improved by a factor of two. Unfortunately, practical applications of Q-OCT are hindered by image-scrambling artefacts and slow acquisition times. Here, we present a theoretical analysis of a novel approach that is free of these problems: Fourier domain Q-OCT (Fd-Q-OCT). Based on a photon pair coincidence detection as in the standard Q-OCT configuration, it also discerns each photon pair by their wavelength. We show that all the information about the internal structures of the object is encoded in the joint spectrum and can be easily retrieved through Fourier transformation. No depth scanning is required, making our technique potentially faster than standard Q-OCT. Finally, we show that the data available in the joint spectrum enables artefact removal and discuss prospective algorithms for doing so.

Wide-field Ophthalmic Space-Division Multiplexing Optical Coherence Tomography

High-speed ophthalmic optical coherence tomography systems are of interest because they allow rapid, motion-free, and wide-field retinal imaging. Space-division multiplexing optical coherence tomography (SDM-OCT) is a high-speed imaging technology which takes advantage of the long coherence length of microelectromechanical vertical cavity surface emitting laser (MEMs VCSEL) sources to multiplex multiple images along a single imaging depth. We demonstrate wide-field retinal OCT imaging, acquired at an effective A-scan rate of 800,000 A-scans/sec with volumetric images covering up to 12.5 mm × 7.4 mm on the retina acquired in less than 1 second. A clinical feasibility study was conducted to compare the ophthalmic SDM-OCT with commercial OCT systems, illustrating the high-speed capability of SDM-OCT in a clinical setting.

Dispersion correction for optical coherence tomography by the stepped detection algorithm in the fractional Fourier domain

Dispersion in optical coherence tomography (OCT) leads to a series of wavelength-dependent phase distortions, which cause degradation of axial resolution. Due to the lack of prior information or the complexity of an exhaustive search calculation, all-depth dispersion suppression can hardly be realized in practical cases, especially for high-speed processing and irregular-structure samples. This paper explores the understanding of the depth-dependent dispersion in the fractional Fourier domain (FRFD) and addresses a new method for dispersion correction based on the FRFD stepped detection algorithm that is able to adaptively compensate the dispersion at all depths of the sample. For the detection of each dispersion component, a coarse search followed by a localized fine search is presented in our algorithm to reduce the calculation complexity with high accuracy guaranteed. A signal separation method utilizing FRFD filtering is also designed to avoid the interference between the dispersion from different depths of the sample, which allows all-depth dispersion correction. The proposed algorithm is verified to be effective through the stratified media of ZnSe. The application of the proposed algorithm in OCT imaging of onion and human coronary artery also demonstrates the feasibility of our algorithm for dispersion correction in bio-tissues.

High-spatial-resolution deep tissue imaging with spectral-domain optical coherence microscopy in the 1700-nm spectral band

We present three-dimensional (3-D) high-resolution spectral-domain optical coherence microscopy (SD-OCM) by using a supercontinuum (SC) fiber laser source with 300-nm spectral bandwidth (full-width at half-maximum) in the 1700-nm spectral band. By using low-coherence interferometry with SC light and a confocal detection scheme, we realized lateral and axial resolutions of 3.4 and 3.8  μm in tissue (n  =  1.38), respectively. This is, to the best of our knowledge, the highest 3-D spatial resolution reported among those of Fourier-domain optical coherence imaging techniques in the 1700-nm spectral band. In our SD-OCM, to enhance the imaging depth, a full-range method was implemented, which suppressed the formation of a coherent ghost image and allowed us to set the zero-delay position inside the samples. We demonstrated the 3-D high-resolution imaging capability of 1700-nm SD-OCM through the measurement of an interference signal from a mirror surface and imaging of a single 200-nm polystyrene bead and a pig thyroid gland. Deep tissue imaging at a depth of up to 1.8 mm was also demonstrated. This is the first demonstration of 3-D high-resolution SD-OCM in the 1700-nm spectral band.

Fiber-based polarization-sensitive optical coherence tomography of a minimalistic system configuration

We present a very simple method of constructing a polarization-sensitive optical coherence tomography (PS-OCT) system. An ordinary fiber-based swept-source OCT system was reconfigured for PS-OCT by adding a long section of polarization-maintaining fiber in the sample arm. Two polarization modes of a large group-delay difference formed spatially distinguished polarization channels. The depth-encoded information on the polarization states was retrieved by an amplitude-based analysis. We found that our method provides an economic scheme of PS-OCT. It demonstrates that an ordinary OCT system can be easily reconfigured for PS-OCT imaging if it has sufficient margins in the imaging range.

Fiber-optic transmission and networking: the previous 20 and the next 20 years [Invited]

Celebrating the 20^th anniversary of Optics Express, this paper reviews the evolution of optical fiber communication systems, and through a look at the previous 20 years attempts to extrapolate fiber-optic technology needs and potential solution paths over the coming 20 years. Well aware that 20-year extrapolations are inherently associated with great uncertainties, we still hope that taking a significantly longer-term view than most texts in this field will provide the reader with a broader perspective and will encourage the much needed out-of-the-box thinking to solve the very significant technology scaling problems ahead of us. Focusing on the optical transport and switching layer, we cover aspects of large-scale spatial multiplexing, massive opto-electronic arrays and holistic optics-electronics-DSP integration, as well as optical node architectures for switching and multiplexing of spatial and spectral superchannels.

Optical coherence tomography in Optics Express [Invited]

Optical coherence tomography (OCT) is one of the most successful technologies in the history of biomedical optics. Optics Express played an important role in communicating groundbreaking technological achievements in the field of OCT, and, conversely, OCT papers are among the most frequently cited papers published in Optics Express. On the occasion of the 20th anniversary of the journal, this review analyzes the reasons for the success of OCT papers in Optics Express and discusses possible motivations for researchers to submit some of their best OCT papers to the journal.

Deep brain optical coherence tomography angiography in mice: in vivo, noninvasive imaging of hippocampal formation

The hippocampus is associated with memory and navigation, and the rodent hippocampus provides a useful model system for studying neurophysiology such as neural plasticity. Vascular changes at this site are closely related to brain diseases, such as Alzheimer's disease, dementia, and epilepsy. Vascular imaging around the hippocampus in mice may help to further elucidate the mechanisms underlying these diseases. Optical coherence tomography angiography (OCTA) is an emerging technology that can provide label-free blood flow information. As the hippocampus is a deep structure in the mouse brain, direct in vivo visualisation of the vascular network using OCTA and other microscopic imaging modalities has been challenging. Imaging of blood vessels in the hippocampus has been performed using multiphoton microscopy; however, labelling with fluorescence probes is necessary when using this technique. Here, we report the use of label-free and noninvasive microvascular imaging in the hippocampal formation of mice using a 1.7-μm swept-source OCT system. The imaging results demonstrate that the proposed system can visualise blood flow at different locations of the hippocampus corresponding with deep brain areas.

All-depth dispersion cancellation in spectral domain optical coherence tomography using numerical intensity correlations

In ultra-high resolution (UHR-) optical coherence tomography (OCT) group velocity dispersion (GVD) must be corrected for in order to approach the theoretical resolution limit. One approach promises not only compensation, but complete annihilation of even order dispersion effects, and that at all sample depths. This approach has hitherto been demonstrated with an experimentally demanding ‘balanced detection’ configuration based on using two detectors. We demonstrate intensity correlation (IC) OCT using a conventional spectral domain (SD) UHR-OCT system with a single detector. IC-SD-OCT configurations exhibit cross term ghost images and a reduced axial range, half of that of conventional SD-OCT. We demonstrate that both shortcomings can be removed by applying a generic artefact reduction algorithm and using analytic interferograms. We show the superiority of IC-SD-OCT compared to conventional SD-OCT by showing how IC-SD-OCT is able to image spatial structures behind a strongly dispersive silicon wafer. Finally, we question the resolution enhancement of \documentclass[12pt]{minimal} \usepackage{amsmath} \usepackage{wasysym} \usepackage{amsfonts} \usepackage{amssymb} \usepackage{amsbsy} \usepackage{mathrsfs} \usepackage{upgreek} \setlength{\oddsidemargin}{-69pt} \begin{document}$$\sqrt{2}$$\end{document}2 that IC-SD-OCT is often believed to have compared to SD-OCT. We show that this is simply the effect of squaring the reflectivity profile as a natural result of processing the product of two intensity spectra instead of a single spectrum.

A handheld microscope integrating photoacoustic microscopy and optical coherence tomography

The combination of optical resolution photoacoustic microscopy (ORPAM) and optical coherence tomography (OCT) is capable of providing complementary imaging contrasts. Unfortunately, the miniaturization of ORPAM remains a major challenge in the development of a handheld dual-modality imaging microscope with OCT. Here, we report the design and evaluation of an integrated ORPAM and OCT imaging probe using a two-dimensional MEMS (micro-electro-mechanical-system)-based optical scanner. This microscope, weighting 35.4 g, has an ultracompact size of 65×30×18 mm³, and an effective imaging area of 2×2 mm². The experimental lateral resolutions are 3.7 μm (ORPAM) and 5.6 μm (OCT), and the axial resolutions are measured as 120 μm (ORPAM) and 7.3 μm (OCT). Besides phantom and animal experiments, we carried out oral imaging of a healthy volunteer to show the clinical feasibility of this technique.

Axial resolution and signal-to-noise ratio in deep-tissue imaging with 1.7-μm high-resolution optical coherence tomography with an ultrabroadband laser source

We investigated the axial resolution and signal-to-noise ratio (SNR) characteristics in deep-tissue imaging by 1.7-μm optical coherence tomography (OCT) with the axial resolution of 4.3  μm in tissue. Because 1.7-μm OCT requires a light source with a spectral width of more than 300 nm full-width at half maximum to achieve such high resolution, the axial resolution in the tissue might be degraded by spectral distortion and chromatic dispersion mismatching between the sample and reference arms. In addition, degradation of the axial resolution would also lead to reduced SNR. Here, we quantitatively evaluated the degradation of the axial resolution and the resulting decrease in SNR by measuring interference signals through a lipid mixture serving as a turbid tissue phantom with large scattering and absorption coefficients. Although the axial resolution was reduced by a factor of ∼6 after passing through a 2-mm-thick tissue phantom, our result clearly showed that compensation of the dispersion mismatching allowed us to achieve an axial resolution of 4.3  μm in tissue and improve the SNR by ∼5  dB compared with the case where dispersion mismatching was not compensated. This improvement was also confirmed in the observation of a hamster’s cheek pouch in a buffer solution.

Depth-dependent dispersion compensation for full-depth OCT image

A depth-dependent dispersion compensation algorithm for enhancing the image quality of the Fourier-domain optical coherence tomography (OCT) is presented. The dispersion related with depth in the sample is considered. Using the iterative method, an analytical formula for compensating the depth-dependent dispersion in the sample is obtained. We apply depth-dependent dispersion compensation algorithm to process the phantom images and in vivo images. Using sharpness metric based on variation coefficient to compare the results processed with different dispersion compensation algorithms, we find that the depth-dependent dispersion compensation algorithm can improve image quality at full depth.

Depth-encoded optical coherence elastography for simultaneous volumetric imaging of two tissue faces

Depth-encoded optical coherence elastography (OCE) enables simultaneous acquisition of two three-dimensional (3D) elastograms from opposite sides of a sample. By the choice of suitable path-length differences in each of two interferometers, the detected carrier frequencies are separated, allowing depth-ranging from each interferometer to be performed simultaneously using a single spectrometer. We demonstrate depth-encoded OCE on a silicone phantom and a freshly excised sample of mouse liver. This technique minimizes the required spectral detection hardware and halves the total scan time. Depth-encoded OCE may expedite clinical translation in time-sensitive applications requiring rapid 3D imaging of multiple tissue surfaces, such as tumor margin assessment in breast-conserving surgery.

Computational optical coherence tomography [Invited]

Optical coherence tomography (OCT) has become an important imaging modality with numerous biomedical applications. Challenges in high-speed, high-resolution, volumetric OCT imaging include managing dispersion, the trade-off between transverse resolution and depth-of-field, and correcting optical aberrations that are present in both the system and sample. Physics-based computational imaging techniques have proven to provide solutions to these limitations. This review aims to outline these computational imaging techniques within a general mathematical framework, summarize the historical progress, highlight the state-of-the-art achievements, and discuss the present challenges.

Dispersion analysis and measurement of potassium tantalate niobate crystals by broadband optical interferometers

Electro-optic crystals, such as potassium tantalate niobate [KTa_1-xNb_xO₃(KTN)], are enabling materials for many optical devices. Their utility in broadband applications heavily depends on their dispersion property. To this end, an analysis of dispersion mismatch in broadband optical interferometers is first presented. Then a method utilizing polynomial phase fitting to measure the dispersion property of materials composing the arms of an interferometer is introduced. As a demonstration, an interferometry system based on optical coherence tomography (OCT) was built, where, for the first time, the group velocity dispersion of a KTN crystal around 1310 nm was measured and numerically compensated for OCT imaging. Several advantages over a widely used method in OCT, which is based on metric functions, are discussed. The results show the fitting method can provide a more reliable measurement with reduced computation complexity.

Common-path optical coherence tomography using a microelectromechanical-system-based endoscopic probe

This paper presents a common-path (CP) swept-source optical coherence tomography (SSOCT) system based on a special endoscopic probe design with an in-line internal reflection as the reference and a two-axis electrothermal microelectromechanical system mirror for image scanning. The rear surface of a gradient reflective index (GRIN) lens inside the probe is set as the reference reflection plane. The length of the GRIN lens is optimized to eliminate the artifacts in SSOCT images successfully. Doppler OCT is also demonstrated based on the CP endoscopic probe. The diameter of the probe is only 2.5 mm, so it can be easily inserted into the biopsy channel of traditional endoscopes to access human internal organs for in vivo diagnoses.

Classical realization of dispersion-canceled, artifact-free, and background-free optical coherence tomography

Quantum-optical coherence tomography (Q-OCT) provides a dispersion-canceled axial-imaging method, but its practical use is limited by the weakness of the light source and by artifacts in the images. A recent study using chirped-pulse interferometry (CPI) has demonstrated dispersion-canceled and artifact-free OCT with a classical system; however, unwanted background signals still remain after removing the artifacts. Here, we propose a classical optical method that realizes dispersion-canceled, artifact-free, and background-free OCT. We employ a time-reversed system for Q-OCT with transform-limited input laser pulses to achieve dispersion-canceled OCT with a classical system. We have also introduced a subtraction method to remove artifacts and background signals. With these methods, we experimentally demonstrated dispersion-canceled, artifact-free, and background-free axial imaging of a coverglass and cross-sectional imaging of the surface of a coin.

Experimental Demonstration of Spectral Intensity Optical Coherence Tomography

We demonstrate experimentally spectral-domain intensity optical coherence tomography using a Mach-Zehnder interferometer with balanced detection. We show that the technique allows for a point spread function with reduced full-width at half maximum compared to conventional optical coherence tomography. The method further provides benefits similar to those of chirped-pulse interferometry in terms of dispersion cancellation but only requires a broadband incoherent source and standard detectors. The measurements are in excellent agreement with the theoretical predictions. Finally, we propose an approach that enables the elimination of potential artefacts arising from multiple interfaces.

Image contrast reduction mechanism in full-field optical coherence tomography

Correct interpretation of image contrast obtained with full-field optical coherence tomography (FFOCT) technique is required for accurate medical diagnosis applications. In this work, first, the characteristics of microscopic structures of tissue that generate the contrast in en-face tomographic image obtained with FFOCT are discussed. Then an overview is given of the parameters that affect image contrast. Finally, the contrast correction factor for correct image interpretation and the contrast limits to practical FFOCT systems are outlined.

Transmission optical coherence tomography based measurement of optical material properties

We present transmission optical coherence tomography (transmission OCT) as a versatile tool to measure optical material properties of turbid media. The transmission OCT signal is described in detail and it is demonstrated how the group refractive index (n(g)), group velocity dispersion (GVD) and optical attenuation can be determined from this signal. We experimentally validate the refractive index properties of glasses, liquids and glucose water solutions in terms of n(g) and GVD. Measurements of scattering coefficients are determined using transmission OCT for suspensions of silica particles. Quantitative agreement is obtained with a dependent scattering model, both for the average as well as the wavenumber resolved optical attenuation coefficient. Good agreement is observed between our measurements and literature values.

Co-localized confocal Raman spectroscopy and optical coherence tomography (CRS-OCT) for depth-resolved analyte detection in tissue

We report the development of a combined confocal Raman spectroscopy (CRS) and optical coherence tomography (OCT) instrument (CRS-OCT) capable of measuring analytes in targeted biological tissues with sub-100-micron spatial resolution. The OCT subsystem was used to measure depth-resolved tissue morphology and guide the acquisition of chemically-specific Raman spectra. To demonstrate its utility, the instrument was used to accurately measure depth-resolved, physiologically-relevant concentrations of Tenofovir, a microbicide drug used to prevent the sexual transmission of HIV, in ex vivo tissue samples.

Extraction of linear anisotropic parameters using optical coherence tomography and hybrid Mueller matrix formalism

A method is proposed for extracting the linear birefringence (LB) and linear dichroism (LD) properties of an anisotropic optical sample using reflection-mode optical coherence tomography (OCT) and a hybrid Mueller matrix formalism. To ensure the accuracy of the extracted parameter values, a method is proposed for calibrating and compensating the polarization distortion effect induced by the beam splitters in the OCT system using a composite quarter-waveplate / half-waveplate / quarter-waveplate structure. The validity of the proposed method is confirmed by extracting the LB and LD properties of a quarter-wave plate and a defective polarizer. To the best of the authors' knowledge, the method proposed in this study represents the first reported attempt to utilize an inverse Mueller matrix formalism and a reflection-mode OCT structure to extract the LB and LD parameters of optically anisotropic samples.

Dispersion compensation in Fourier domain optical coherence tomography

In this work, we propose a numerical technique to compensate for errors due to dispersion effects in Fourier domain optical coherence tomography. The proposed technique corrects for errors in depth measurements and resolution loss due to dispersion. The results show that, by using this technique, errors in thickness measurement are reduced from about 5% to less than 0.1% depending on the sample length and the amount of dispersion. Also, an improvement in the resolution from about 50 μm to less than 10 μm is demonstrated.

Automated assessment of the remineralization of artificial enamel lesions with polarization-sensitive optical coherence tomography

Accurate measurement of the highly mineralized transparent surface layer that forms on caries lesions is important for diagnosis of the lesion activity because chemical intervention can slow or reverse the caries process via remineralization. Previous in-vitro and in-vivo studies have demonstrated that polarization-sensitive optical coherence tomography (PS-OCT) can nondestructively image the subsurface lesion structure and the highly mineralized transparent surface zone of caries lesions. The purpose of this study was to develop an approach to automatically process 3-dimensional PS-OCT images and to accurately assess the remineralization process in simulated enamel lesions. Artificial enamel lesions were prepared on twenty bovine enamel blocks using two models to produce varying degree of demineralization and remineralization. The thickness of the transparent surface layer and the integrated reflectivity of the subsurface lesion were measured using PS-OCT. The automated transparent surface layer detection algorithm was able to successfully detect the transparent surface layers with high sensitivity ( = 0.92) and high specificity ( = 0.97). The estimated thickness of the transparent surface layer showed a strong correlation with polarized light microscopy (PLM) measurements of all regions (R(2) = 0.90). The integrated reflectivity, ΔR, and the integrated mineral loss, ΔZ, showed a moderate correlation (R(2) = 0.32). This study demonstrates that PS-OCT can automatically measure the changes in artificial enamel lesion structure and severity upon exposure to remineralization solutions.

Radio-frequency low-coherence interferometry

A method for retrieving low-coherence interferograms, based on the use of a microwave photonics filter, is proposed and demonstrated. The method is equivalent to the double-interferometer technique, with the scanning interferometer replaced by an analog fiber-optics link and the visibility recorded as the amplitude of its radio-frequency (RF) response. As a low-coherence interferometry system, it shows a decrease of resolution induced by the fiber's third-order dispersion (β3). As a displacement sensor, it provides highly linear and slope-scalable readouts of the interferometer's optical path difference in terms of RF, even in the presence of third-order dispersion. In a proof-of-concept experiment, we demonstrate 20-μm displacement readouts using C-band EDFA sources and standard single-mode fiber.

Intensity-interferometric spectral-domain optical coherence tomography with dispersion cancellation

We describe a technique for cancelling group-velocity dispersion in spectral-domain (SD) optical coherence tomography (OCT) based on classical intensity correlations. As a classical analogue of quantum OCT, a Hong-Ou-Mandel interferometer is combined with a conventional SD-OCT setup, and correlations between different spectral intensities are calculated. It is shown theoretically that a simple computational procedure used in SD-OCT enables scanless cross-sectional imaging with both dispersion cancellation and a factor-of-√2 resolution enhancement. The method involves no ultrafast detectors and works with common light sources.

Design of a Swept-Source, Anatomical OCT System for Pediatric Bronchoscopy

We describe the design and performance of a long coherence length, swept-source anatomical OCT (aOCT) system for pediatric airway imaging. A fiber-optic catheter is designed to be accommodated by a small-bore bronchoscope, and is scanned distally in a helical scan pattern to provide aOCT during bronchoscopy. We discuss particular challenges associated with the need for large imaging range, low SNR roll-off, and small catheter diameter. We present 3-D visualizations of airway phantoms and discuss optimization of the airway surface geometry obtained by aOCT. Accurate reconstruction of airway geometry will enable predictive modeling of patients suffering from airway obstruction.

Guide-star-based computational adaptive optics for broadband interferometric tomography

We present a method for the numerical correction of optical aberrations based on indirect sensing of the scattered wavefront from point-like scatterers ("guide stars") within a three-dimensional broadband interferometric tomogram. This method enables the correction of high-order monochromatic and chromatic aberrations utilizing guide stars that are revealed after numerical compensation of defocus and low-order aberrations of the optical system. Guide-star-based aberration correction in a silicone phantom with sparse sub-resolution-sized scatterers demonstrates improvement of resolution and signal-to-noise ratio over a large isotome. Results in highly scattering muscle tissue showed improved resolution of fine structure over an extended volume. Guide-star-based computational adaptive optics expands upon the use of image metrics for numerically optimizing the aberration correction in broadband interferometric tomography, and is analogous to phase-conjugation and time-reversal methods for focusing in turbid media.

Dispersion compensation in Fourier domain optical coherence tomography using the fractional Fourier transform

We address numerical dispersion compensation based on the use of the fractional Fourier transform (FrFT). The FrFT provides a new fundamental perspective on the nature and role of group-velocity dispersion in Fourier domain OCT. The dispersion induced by a 26 mm long water cell was compensated for a spectral bandwidth of 110 nm, allowing the theoretical axial resolution in air of 3.6 μm to be recovered from the dispersion degraded point spread function. Additionally, we present a new approach for depth dependent dispersion compensation based on numerical simulations. Finally, we show how the optimized fractional Fourier transform order parameter can be used to extract the group velocity dispersion coefficient of a material.

Method for improving the resolution and accuracy against birefringence dispersion in distributed polarization cross-talk measurements

We present a novel method for improving the spatial resolution and amplitude accuracy of distributed polarization cross-talk measurements in a polarization maintaining (PM) fiber against its birefringence dispersion. We show that the broadening of measured polarization cross-talk peaks caused by birefringence dispersion can be restored by simply multiplying the measurement data with a compensation function. The birefringence dispersion variable in the function can be obtained by finding the widths of measured cross-talk envelopes at known distances along the fiber. We demonstrate that this method can effectively improve spatial resolution and amplitude accuracy of the space-resolved polarization cross-talk measurements of long PM fibers.

Design and validation of an angle-resolved low-coherence interferometry fiber probe for in vivo clinical measurements of depth-resolved nuclear morphology

We present a novel Fourier-domain angle-resolved low-coherence interferometry (a /LCI) fiber probe designed for in vivo clinical application in gastrointestinal endoscopy. The a/LCI technique measures the depth-resolved angular scattering distribution to determine the size distribution and optical density of cell nuclei for assessing the health of epithelial tissues. Clinical application is enabled by an endoscopic fiber-optic probe that employs a 2.3-m-long coherent fiber bundle and is compatible with the standard 2.8-mm-diam biopsy channel of a gastroscope. The probe allows for real-time data acquisition by collecting the scattering from multiple angles in parallel, enabled by the Fourier domain approach. The performance of the probe is characterized through measurement of critical parameters. The depth-resolved sizing capability of the system is demonstrated using single- and double-layer microsphere phantoms with subwavelength sizing precision and accuracy achieved. Initial results from a clinical feasibility test are also presented to show in vivo application in the human esophagus.

Highly reproducible swept-source, dispersion-encoded full-range biometry and imaging of the mouse eye

We report a high-speed, dispersion-encoded, full-range (DEFR) swept-source optical coherence tomography system for in vivo ocular imaging and biometry of small animals. The fast DEFR algorithm removes the depth ambiguity, gives access to objects located at the zero delay position, and doubles the sampling depth to 2x5.0 mm (at -101 to -71 dB sensitivity) in a single scan using 2048 samples/depth scan 0.43 nm line width of a light source operating at 1056 nm with 70 nm tuning range. The acquisition speed (frames of 512 depth scans in 18.3 ms) permits precise on-line monitoring during positioning and provides cross-sectional views of the mouse eye. Preliminary studies demonstrate high-throughput, reproducible assessment of multiple biometric features (e.g., day-to-day reproducibility of axial length measurement +/-5.3 microm) that is insensitive to eye motion sufficient for long-term monitoring.

Optical coherence tomography - development, principles, applications

This paper presents a review of the development of optical coherence tomography (OCT), its principles and important applications. Basic OCT systems are described and the physical foundations of OCT signal properties and signal recording systems are reviewed. Recent examples of OCT applications in ophthalmology, cardiology, gastroenterology and dermatology outline the relevance of this advanced imaging modality in the medical field.

Resolution-enhanced optical coherence tomography based on classical intensity interferometry

We propose a fourth-order interference scheme for optical coherence tomography operating with broadband incoherent (or quasi-incoherent) light. It is shown that using this proposal, an axial resolution improvement by a factor of sqrt 2 and a better sensitivity for weakly reflecting samples are obtained than with the standard second-order correlation scheme. From a practical perspective, we suggest the use of broadband Q-switched pulses and performing ultrafast intensity correlation with a nonlinear crystal. The global performance of our proposal is illustrated by means of numerical simulations.

Dispersion encoded full range frequency domain optical coherence tomography

We propose an iterative algorithm that exploits the dispersion mismatch between reference and sample arm in frequency-domain optical coherence tomography (FD-OCT) to effectively cancel complex conjugate mirror terms in individual A-scans and thereby generate full range tomograms. The resulting scheme, termed dispersion encoded full range (DEFR) OCT, allows distinguishing real structures from complex conjugate mirror artifacts. Even though DEFR-OCT has higher post-processing complexity than conventional FD-OCT, acquisition speed is not compromised since no additional A-scans need to be measured, thereby rendering this technique robust against phase fluctuations. The algorithm uses numerical dispersion compensation and exhibits similar resolution as standard processing. The residual leakage of mirror terms is further reduced by incorporating additional knowledge such as the power spectrum of the light source. The suppression ratio of mirror signals is more than 50 dB and thus comparable to complex FD-OCT techniques which use multiple A-scans.

Laser applications and system considerations in ocular imaging

We review laser applications for primarily in vivo ocular imaging techniques, describing their constraints based on biological tissue properties, safety, and the performance of the imaging system. We discuss the need for cost effective sources with practical wavelength tuning capabilities for spectral studies. Techniques to probe the pathological changes of layers beneath the highly scattering retina and diagnose the onset of various eye diseases are described. The recent development of several optical coherence tomography based systems for functional ocular imaging is reviewed, as well as linear and nonlinear ocular imaging techniques performed with ultrafast lasers, emphasizing recent source developments and methods to enhance imaging contrast.

Dispersion properties of grating-based rapid scanning optical delay lines

The signal expression measured by an OCT system is derived, which reveals the possibility of tissue dispersion compensation by introducing the required amount of dispersion in the reference arm and may be implemented by incorporating the grating- based rapid scanning optical delay (RSOD) lines in the reference arm of OCT. The more accurate expressions for the group-delay dispersion (GDD) and the second-order GDD are derived for the grating-based RSOD lines. A comparison of our results with previous ones is done, which shows that when only the GDD is of concern, the previously reported results are accurate. However, when it becomes necessary to take the effect of the second-order GDD into account, the more accurate formula must be used. The obtained results may be of great importance for maximizing the imaging properties of OCT in tissue imaging.

Retinal nerve fiber layer thickness map determined from optical coherence tomography images

We introduce a method to determine the retinal nerve fiber layer (RNFL) thickness in OCT images based on anisotropic noise suppression and deformable splines. Spectral-Domain Optical Coherence Tomography (SDOCT) data was acquired at 29 kHz A-line rate with a depth resolution of 2.6 mum and a depth range of 1.6 mm. Areas of 9.6x6.4 mm2 and 6.4x6.4 mm2 were acquired in approximately 6 seconds. The deformable spline algorithm determined the vitreous-RNFL and RNFL-ganglion cell/inner plexiform layer boundary, respectively, based on changes in the reflectivity, resulting in a quantitative estimation of the RNFL thickness. The thickness map was combined with an integrated reflectance map of the retina and a typical OCT movie to facilitate clinical interpretation of the OCT data. Large area maps of RNFL thickness will permit better longitudinal evaluation of RNFL thinning in glaucoma.

Dispersion control with a Fourier-domain optical delay line in a fiber-optic imaging interferometer

Recently, Fourier-domain (FD) optical delay lines (ODLs) were introduced for high-speed scanning and dispersion compensation in imaging interferometry. We investigate the effect of first- and second-order dispersion on the photocurrent signal associated with an optical coherence imaging system implemented with a single-mode fiber, a superluminescent diode centered at 950 nm +/- 35 nm, a FD ODL, a mirror, and a layered LiTAO3 that has suitable dispersion characteristics to model a skin specimen. We present a practical and useful method to minimize the effect of dispersion through the interferometer and the specimen combined, as well as to quantify the results using two general metrics for resolution. Theoretical and associated experimental results show that, under the optimum solution, the maximum broadening of the point-spread function through a 1-mm-deep specimen is limited to 57% of its original rms width value (i.e., 8.1 microm optimal, 12.7 microm at maximum broadening) compared with approximately 110% when compensation is performed without the specimen taken into account.

Optical coherence tomography: Technology and applications for neuroimaging

Optical coherence tomography (OCT) is an emerging imaging technology with applications in biology, medicine, and materials investigations. Attractive features include high cellular-level resolution, real-time acquisition rates, and spectroscopic feature extraction in a compact noninvasive instrument. OCT can perform "optical biopsies" of tissue, producing images approaching the resolution of histology without having to resect and histologically process tissue specimens for characterization and diagnosis. This article will review several of the current technological developments in OCT. To illustrate the potential of this technology for neuroimaging, applications for imaging neural development, the neural retina, tumors of the central nervous system, and the microsurgical repair of peripheral nerves will be presented. This technology offers a potential investigative tool for addressing many of the present challenges in neuroimaging.