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For: Grant BJ, Gheorghe DM, Zheng W, Alonso M, Huber G, Dlugosz M, McCammon JA, Cross RA. Electrostatically biased binding of kinesin to microtubules. PLoS Biol 2011;9:e1001207. [PMID: 22140358 DOI: 10.1371/journal.pbio.1001207] [Citation(s) in RCA: 58] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/07/2011] [Accepted: 10/19/2011] [Indexed: 11/19/2022]  Open
Number Cited by Other Article(s)
1
Huang P, Chen G, Zhu Z, Wang S, Chen Z, Chai Y, Li W, Ou G. Phosphorylation-dependent regional motility of the ciliary kinesin OSM-3. J Cell Biol 2025;224:e202407152. [PMID: 40272473 PMCID: PMC12020746 DOI: 10.1083/jcb.202407152] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/02/2024] [Revised: 01/29/2025] [Accepted: 03/31/2025] [Indexed: 04/25/2025]  Open
2
ElSawy KM. Utility of Brownian dynamics simulations in chemistry and biology: A comprehensive review. Biochim Biophys Acta Gen Subj 2025;1869:130740. [PMID: 39694298 DOI: 10.1016/j.bbagen.2024.130740] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/04/2024] [Revised: 12/09/2024] [Accepted: 12/10/2024] [Indexed: 12/20/2024]
3
Sumiyoshi R, Yamagishi M, Furuta A, Nishizaka T, Furuta K, Cross RA, Yajima J. Tether-scanning the kinesin motor domain reveals a core mechanical action. Proc Natl Acad Sci U S A 2024;121:e2403739121. [PMID: 39012822 PMCID: PMC11287258 DOI: 10.1073/pnas.2403739121] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/22/2024] [Accepted: 06/17/2024] [Indexed: 07/18/2024]  Open
4
Rangan KJ, Reck-Peterson SL. RNA recoding in cephalopods tailors microtubule motor protein function. Cell 2023;186:2531-2543.e11. [PMID: 37295401 PMCID: PMC10467349 DOI: 10.1016/j.cell.2023.04.032] [Citation(s) in RCA: 20] [Impact Index Per Article: 10.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/10/2022] [Revised: 03/05/2023] [Accepted: 04/24/2023] [Indexed: 06/12/2023]
5
Zaniewski TM, Hancock WO. Positive charge in the K-loop of the kinesin-3 motor KIF1A regulates superprocessivity by enhancing microtubule affinity in the one-head-bound state. J Biol Chem 2023;299:102818. [PMID: 36549649 PMCID: PMC9871336 DOI: 10.1016/j.jbc.2022.102818] [Citation(s) in RCA: 8] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/22/2022] [Revised: 12/13/2022] [Accepted: 12/14/2022] [Indexed: 12/24/2022]  Open
6
Průša J, Cifra M. Electro-detachment of kinesin motor domain from microtubule in silico. Comput Struct Biotechnol J 2023;21:1349-1361. [PMID: 36814722 PMCID: PMC9939557 DOI: 10.1016/j.csbj.2023.01.018] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/27/2022] [Revised: 01/15/2023] [Accepted: 01/15/2023] [Indexed: 01/22/2023]  Open
7
Li Q, Ferrare JT, Silver J, Wilson JO, Arteaga-Castaneda L, Qiu W, Vershinin M, King SJ, Neuman KC, Xu J. Cholesterol in the cargo membrane amplifies tau inhibition of kinesin-1-based transport. Proc Natl Acad Sci U S A 2023;120:e2212507120. [PMID: 36626558 PMCID: PMC9934065 DOI: 10.1073/pnas.2212507120] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/23/2022] [Accepted: 12/08/2022] [Indexed: 01/11/2023]  Open
8
Anchoring geometry is a significant factor in determining the direction of kinesin-14 motility on microtubules. Sci Rep 2022;12:15417. [PMID: 36104376 PMCID: PMC9474454 DOI: 10.1038/s41598-022-19589-4] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/03/2022] [Accepted: 08/31/2022] [Indexed: 11/25/2022]  Open
9
Guo W, Sun S, Sanchez JE, Lopez-Hernandez AE, Ale TA, Chen J, Afrin T, Qiu W, Xie Y, Li L. Using a comprehensive approach to investigate the interaction between Kinesin-5/Eg5 and the microtubule. Comput Struct Biotechnol J 2022;20:4305-4314. [PMID: 36051882 PMCID: PMC9396395 DOI: 10.1016/j.csbj.2022.08.020] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/12/2022] [Revised: 08/01/2022] [Accepted: 08/08/2022] [Indexed: 01/02/2023]  Open
10
Ahn SH, Huber GA, McCammon JA. Investigating Intrinsically Disordered Proteins With Brownian Dynamics. Front Mol Biosci 2022;9:898838. [PMID: 35755809 PMCID: PMC9213797 DOI: 10.3389/fmolb.2022.898838] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/17/2022] [Accepted: 05/17/2022] [Indexed: 11/30/2022]  Open
11
Pabbathi A, Coleman L, Godar S, Paul A, Garlapati A, Spencer M, Eller J, Alper JD. Long-range electrostatic interactions significantly modulate the affinity of dynein for microtubules. Biophys J 2022;121:1715-1726. [PMID: 35346642 PMCID: PMC9117880 DOI: 10.1016/j.bpj.2022.03.029] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/24/2021] [Revised: 01/13/2022] [Accepted: 03/24/2022] [Indexed: 11/02/2022]  Open
12
Gao M, Han Y, Zeng Y, Su Z, Huang Y. Introducing intrinsic disorder reduces electrostatic steering in protein-protein interactions. Biophys J 2021;120:2998-3007. [PMID: 34214536 DOI: 10.1016/j.bpj.2021.06.021] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/17/2020] [Revised: 04/03/2021] [Accepted: 06/17/2021] [Indexed: 02/05/2023]  Open
13
Maruyama Y, Sugawa M, Yamaguchi S, Davies T, Osaki T, Kobayashi T, Yamagishi M, Takeuchi S, Mishima M, Yajima J. CYK4 relaxes the bias in the off-axis motion by MKLP1 kinesin-6. Commun Biol 2021;4:180. [PMID: 33568771 PMCID: PMC7876049 DOI: 10.1038/s42003-021-01704-2] [Citation(s) in RCA: 16] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/09/2019] [Accepted: 01/14/2021] [Indexed: 12/18/2022]  Open
14
Biased Brownian Motion of KIF1A and the Role of Tubulin's C-Terminal Tail Studied by Molecular Dynamics Simulation. Int J Mol Sci 2021;22:ijms22041547. [PMID: 33557020 PMCID: PMC7913626 DOI: 10.3390/ijms22041547] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/06/2021] [Revised: 01/28/2021] [Accepted: 02/01/2021] [Indexed: 12/29/2022]  Open
15
Xian Y, Xie Y, Silva SM, Karki CB, Qiu W, Li L. StructureMan: A Structure Manipulation Tool to Study Large Scale Biomolecular Interactions. Front Mol Biosci 2021;7:627087. [PMID: 33505991 PMCID: PMC7831659 DOI: 10.3389/fmolb.2020.627087] [Citation(s) in RCA: 13] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/08/2020] [Accepted: 12/10/2020] [Indexed: 11/22/2022]  Open
16
Feizabadi MS, Alejilat RS, Duffy AB, Breslin JC, Akintola II. A Confirmation for the Positive Electric Charge of Bio-Molecular Motors through Utilizing a Novel Nano-Technology Approach In Vitro. Int J Mol Sci 2020;21:ijms21144935. [PMID: 32668620 PMCID: PMC7404192 DOI: 10.3390/ijms21144935] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/20/2020] [Revised: 07/07/2020] [Accepted: 07/08/2020] [Indexed: 11/22/2022]  Open
17
Průša J, Cifra M. Molecular dynamics simulation of the nanosecond pulsed electric field effect on kinesin nanomotor. Sci Rep 2019;9:19721. [PMID: 31873109 PMCID: PMC6928163 DOI: 10.1038/s41598-019-56052-3] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/17/2019] [Accepted: 11/18/2019] [Indexed: 12/23/2022]  Open
18
Sudhakar S, Jachowski TJ, Kittelberger M, Maqbool A, Hermsdorf GL, Abdosamadi MK, Schäffer E. Supported Solid Lipid Bilayers as a Platform for Single-Molecule Force Measurements. NANO LETTERS 2019;19:8877-8886. [PMID: 31746618 DOI: 10.1021/acs.nanolett.9b03761] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/10/2023]
19
Shi XX, Guo SK, Wang PY, Chen H, Xie P. All-atom molecular dynamics simulations reveal how kinesin transits from one-head-bound to two-heads-bound state. Proteins 2019;88:545-557. [PMID: 31589786 DOI: 10.1002/prot.25833] [Citation(s) in RCA: 20] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/18/2019] [Revised: 08/19/2019] [Accepted: 09/17/2019] [Indexed: 12/15/2022]
20
Structural basis for power stroke vs. Brownian ratchet mechanisms of motor proteins. Proc Natl Acad Sci U S A 2019;116:19777-19785. [PMID: 31506355 DOI: 10.1073/pnas.1818589116] [Citation(s) in RCA: 77] [Impact Index Per Article: 12.8] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/08/2023]  Open
21
Tubulin response to intense nanosecond-scale electric field in molecular dynamics simulation. Sci Rep 2019;9:10477. [PMID: 31324834 PMCID: PMC6642143 DOI: 10.1038/s41598-019-46636-4] [Citation(s) in RCA: 40] [Impact Index Per Article: 6.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/12/2019] [Accepted: 06/18/2019] [Indexed: 12/12/2022]  Open
22
Ilan Y. Randomness in microtubule dynamics: an error that requires correction or an inherent plasticity required for normal cellular function? Cell Biol Int 2019;43:739-748. [DOI: 10.1002/cbin.11157] [Citation(s) in RCA: 51] [Impact Index Per Article: 8.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/12/2019] [Accepted: 04/28/2019] [Indexed: 01/01/2023]
23
Kuffel A, Szałachowska M. The significance of the properties of water for the working cycle of the kinesin molecular motor. J Chem Phys 2018;148:235101. [DOI: 10.1063/1.5020208] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022]  Open
24
Parsing the roles of neck-linker docking and tethered head diffusion in the stepping dynamics of kinesin. Proc Natl Acad Sci U S A 2017;114:E9838-E9845. [PMID: 29087307 DOI: 10.1073/pnas.1706014114] [Citation(s) in RCA: 28] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/28/2022]  Open
25
Kinesin rotates unidirectionally and generates torque while walking on microtubules. Proc Natl Acad Sci U S A 2017;114:10894-10899. [PMID: 28973906 DOI: 10.1073/pnas.1706985114] [Citation(s) in RCA: 52] [Impact Index Per Article: 6.5] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/06/2023]  Open
26
Li L, Jia Z, Peng Y, Godar S, Getov I, Teng S, Alper J, Alexov E. Forces and Disease: Electrostatic force differences caused by mutations in kinesin motor domains can distinguish between disease-causing and non-disease-causing mutations. Sci Rep 2017;7:8237. [PMID: 28811629 PMCID: PMC5557957 DOI: 10.1038/s41598-017-08419-7] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/28/2017] [Accepted: 07/10/2017] [Indexed: 01/09/2023]  Open
27
Ulasov IV, Foster H, Butters M, Yoon JG, Ozawa T, Nicolaides T, Figueroa X, Hothi P, Prados M, Butters J, Cobbs C. Precision knockdown of EGFR gene expression using radio frequency electromagnetic energy. J Neurooncol 2017;133:257-264. [PMID: 28434113 DOI: 10.1007/s11060-017-2440-x] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/19/2016] [Accepted: 04/15/2017] [Indexed: 10/19/2022]
28
Li L, Alper J, Alexov E. Cytoplasmic dynein binding, run length, and velocity are guided by long-range electrostatic interactions. Sci Rep 2016;6:31523. [PMID: 27531742 PMCID: PMC4987762 DOI: 10.1038/srep31523] [Citation(s) in RCA: 32] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/01/2016] [Accepted: 07/21/2016] [Indexed: 12/23/2022]  Open
29
Scarabelli G, Soppina V, Yao XQ, Atherton J, Moores CA, Verhey KJ, Grant BJ. Mapping the Processivity Determinants of the Kinesin-3 Motor Domain. Biophys J 2016;109:1537-40. [PMID: 26488644 PMCID: PMC4624112 DOI: 10.1016/j.bpj.2015.08.027] [Citation(s) in RCA: 21] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/22/2015] [Revised: 08/17/2015] [Accepted: 08/20/2015] [Indexed: 12/27/2022]  Open
30
Meli M, Sustarsic M, Craggs TD, Kapanidis AN, Colombo G. DNA Polymerase Conformational Dynamics and the Role of Fidelity-Conferring Residues: Insights from Computational Simulations. Front Mol Biosci 2016;3:20. [PMID: 27303671 PMCID: PMC4882331 DOI: 10.3389/fmolb.2016.00020] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/16/2016] [Accepted: 05/10/2016] [Indexed: 12/11/2022]  Open
31
Multiscale method for modeling binding phenomena involving large objects: application to kinesin motor domains motion along microtubules. Sci Rep 2016;6:23249. [PMID: 26988596 PMCID: PMC4796874 DOI: 10.1038/srep23249] [Citation(s) in RCA: 23] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/09/2015] [Accepted: 03/03/2016] [Indexed: 11/30/2022]  Open
32
Schneider R, Korten T, Walter WJ, Diez S. Kinesin-1 motors can circumvent permanent roadblocks by side-shifting to neighboring protofilaments. Biophys J 2016;108:2249-57. [PMID: 25954882 DOI: 10.1016/j.bpj.2015.03.048] [Citation(s) in RCA: 47] [Impact Index Per Article: 5.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/12/2014] [Revised: 02/11/2015] [Accepted: 03/19/2015] [Indexed: 12/21/2022]  Open
33
Minoura I, Takazaki H, Ayukawa R, Saruta C, Hachikubo Y, Uchimura S, Hida T, Kamiguchi H, Shimogori T, Muto E. Reversal of axonal growth defects in an extraocular fibrosis model by engineering the kinesin-microtubule interface. Nat Commun 2016;7:10058. [PMID: 26775887 PMCID: PMC4735607 DOI: 10.1038/ncomms10058] [Citation(s) in RCA: 27] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/26/2014] [Accepted: 10/28/2015] [Indexed: 12/22/2022]  Open
34
Das M, Basu G. Protein-protein association rates captured in a single geometric parameter. Proteins 2015;83:1557-62. [DOI: 10.1002/prot.24860] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/01/2015] [Revised: 06/04/2015] [Accepted: 07/02/2015] [Indexed: 02/05/2023]
35
Lee PL, Ohlson MB, Pfeffer SR. Rab6 regulation of the kinesin family KIF1C motor domain contributes to Golgi tethering. eLife 2015;4. [PMID: 25821985 PMCID: PMC4405695 DOI: 10.7554/elife.06029] [Citation(s) in RCA: 51] [Impact Index Per Article: 5.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/11/2014] [Accepted: 03/29/2015] [Indexed: 12/26/2022]  Open
36
Bouxsein NF, Bachand GD. Single Filament Behavior of Microtubules in the Presence of Added Divalent Counterions. Biomacromolecules 2014;15:3696-705. [DOI: 10.1021/bm500988r] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
37
Pang X, Zhou HX. Distinct mechanisms of a phosphotyrosyl peptide binding to two SH2 domains. JOURNAL OF THEORETICAL & COMPUTATIONAL CHEMISTRY 2014;13:1440003. [DOI: 10.1142/s0219633614400033] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/15/2023]
38
Soppina V, Verhey KJ. The family-specific K-loop influences the microtubule on-rate but not the superprocessivity of kinesin-3 motors. Mol Biol Cell 2014;25:2161-70. [PMID: 24850887 PMCID: PMC4091829 DOI: 10.1091/mbc.e14-01-0696] [Citation(s) in RCA: 45] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Abstract] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]  Open
39
Cross RA, McAinsh A. Prime movers: the mechanochemistry of mitotic kinesins. Nat Rev Mol Cell Biol 2014;15:257-71. [PMID: 24651543 DOI: 10.1038/nrm3768] [Citation(s) in RCA: 140] [Impact Index Per Article: 12.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
40
Microtubule shuttles on kinesin-coated glass micro-wire tracks. Biomed Microdevices 2014;16:501-8. [DOI: 10.1007/s10544-014-9852-6] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/25/2022]
41
AvrBsT acetylates Arabidopsis ACIP1, a protein that associates with microtubules and is required for immunity. PLoS Pathog 2014;10:e1003952. [PMID: 24586161 PMCID: PMC3930583 DOI: 10.1371/journal.ppat.1003952] [Citation(s) in RCA: 76] [Impact Index Per Article: 6.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/16/2013] [Accepted: 01/10/2014] [Indexed: 11/19/2022]  Open
42
Geng YZ, Liu SX, Ji Q, Yan S. Mechanical amplification mechanism of kinesin's β-domain. Arch Biochem Biophys 2013;543:10-4. [PMID: 24374282 DOI: 10.1016/j.abb.2013.12.017] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/31/2013] [Revised: 12/10/2013] [Accepted: 12/18/2013] [Indexed: 10/25/2022]
43
Zhou HX, Bates PA. Modeling protein association mechanisms and kinetics. Curr Opin Struct Biol 2013;23:887-93. [PMID: 23850142 PMCID: PMC3844007 DOI: 10.1016/j.sbi.2013.06.014] [Citation(s) in RCA: 70] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/03/2013] [Revised: 06/19/2013] [Accepted: 06/19/2013] [Indexed: 11/21/2022]
44
Alper JD, Tovar M, Howard J. Displacement-weighted velocity analysis of gliding assays reveals that Chlamydomonas axonemal dynein preferentially moves conspecific microtubules. Biophys J 2013;104:1989-98. [PMID: 23663842 DOI: 10.1016/j.bpj.2013.03.041] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/16/2013] [Revised: 03/12/2013] [Accepted: 03/20/2013] [Indexed: 10/26/2022]  Open
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Mapping the structural and dynamical features of multiple p53 DNA binding domains: insights into loop 1 intrinsic dynamics. PLoS One 2013;8:e80221. [PMID: 24324553 PMCID: PMC3855832 DOI: 10.1371/journal.pone.0080221] [Citation(s) in RCA: 42] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/11/2013] [Accepted: 09/30/2013] [Indexed: 11/19/2022]  Open
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Mapping the structural and dynamical features of kinesin motor domains. PLoS Comput Biol 2013;9:e1003329. [PMID: 24244137 PMCID: PMC3820509 DOI: 10.1371/journal.pcbi.1003329] [Citation(s) in RCA: 36] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/10/2013] [Accepted: 09/24/2013] [Indexed: 11/20/2022]  Open
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A second tubulin binding site on the kinesin-13 motor head domain is important during mitosis. PLoS One 2013;8:e73075. [PMID: 24015286 PMCID: PMC3755979 DOI: 10.1371/journal.pone.0073075] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/24/2013] [Accepted: 07/15/2013] [Indexed: 01/03/2023]  Open
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Tarhan MC, Orazov Y, Yokokawa R, Karsten SL, Fujita H. Biosensing MAPs as "roadblocks": kinesin-based functional analysis of tau protein isoforms and mutants using suspended microtubules (sMTs). LAB ON A CHIP 2013;13:3217-3224. [PMID: 23778963 DOI: 10.1039/c3lc50151e] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/02/2023]
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Golubeva N, Imparato A. Maximum power operation of interacting molecular motors. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2013;88:012114. [PMID: 23944421 DOI: 10.1103/physreve.88.012114] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/21/2013] [Indexed: 06/02/2023]
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Kanada R, Kuwata T, Kenzaki H, Takada S. Structure-based molecular simulations reveal the enhancement of biased Brownian motions in single-headed kinesin. PLoS Comput Biol 2013;9:e1002907. [PMID: 23459019 PMCID: PMC3572960 DOI: 10.1371/journal.pcbi.1002907] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/26/2012] [Accepted: 12/17/2012] [Indexed: 11/17/2022]  Open
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