1
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Gascon E, Goldy C, Lebecq A, Moulin S, Cerutti G, Bayle V, Gacon F, Bauer A, Fangain A, Azaïs R, Ali O, Caillaud MC. Conserved mechanical hallmark guides four-way junction avoidance during plant cytokinesis. Curr Biol 2025:S0960-9822(25)00510-X. [PMID: 40345197 DOI: 10.1016/j.cub.2025.04.046] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/26/2024] [Revised: 02/24/2025] [Accepted: 04/17/2025] [Indexed: 05/11/2025]
Abstract
When building an organ, adjacent cells coordinate to form topologically stable junctions by integrating mechanosensitive signaling pathways. Positioning the newly formed tricellular junction in walled multicellular organisms is critical, as cells cannot migrate. The cell division site must avoid existing cellular junctions to prevent unstable four-way junctions. The microtubule preprophase band (PPB) is a guideline for the plant cell's future cell division site. Yet, mutants impaired in PPB formation hardly display defects, suggesting the presence of an alternative mechanism. Here, we report the existence of a process that guides the cell division site close to an adjacent tricellular junction. This PPB-independent mechanism depends on the phosphoinositide phosphatase SUPPRESSION OF ACTIN 9 (SAC9): in the Arabidopsis mutant sac9-3, the cell plate abnormally attaches at two equidistant positions from an adjacent tricellular junction. Numerical simulations suggest that elastic energy accumulation at the subcellular level within walls, due to their rheological response to mechanical stresses, could act as positional cues revealing the positions of tricellular junctions. Moreover, perturbation of the root mechanical homeostasis results in four-way junction formation. This provides a scenario in which cells avoid four-way junction formation during cytokinesis through discrete subcellular mechanical hallmarks.
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Affiliation(s)
- Elsa Gascon
- Laboratoire Reproduction et Développement des Plantes (RDP), Université de Lyon, ENS de Lyon, UCB Lyon 1, CNRS, INRAE, Inria, 69342 Lyon, France
| | - Camila Goldy
- Laboratoire Reproduction et Développement des Plantes (RDP), Université de Lyon, ENS de Lyon, UCB Lyon 1, CNRS, INRAE, Inria, 69342 Lyon, France
| | - Alexis Lebecq
- Laboratoire Reproduction et Développement des Plantes (RDP), Université de Lyon, ENS de Lyon, UCB Lyon 1, CNRS, INRAE, Inria, 69342 Lyon, France; Department of Biology, Stanford University, Stanford, CA 94305, USA
| | - Samantha Moulin
- Laboratoire Reproduction et Développement des Plantes (RDP), Université de Lyon, ENS de Lyon, UCB Lyon 1, CNRS, INRAE, Inria, 69342 Lyon, France
| | - Guillaume Cerutti
- Laboratoire Reproduction et Développement des Plantes (RDP), Université de Lyon, ENS de Lyon, UCB Lyon 1, CNRS, INRAE, Inria, 69342 Lyon, France
| | - Vincent Bayle
- Laboratoire Reproduction et Développement des Plantes (RDP), Université de Lyon, ENS de Lyon, UCB Lyon 1, CNRS, INRAE, Inria, 69342 Lyon, France
| | - Florian Gacon
- Laboratoire Reproduction et Développement des Plantes (RDP), Université de Lyon, ENS de Lyon, UCB Lyon 1, CNRS, INRAE, Inria, 69342 Lyon, France
| | - Amelie Bauer
- Laboratoire Reproduction et Développement des Plantes (RDP), Université de Lyon, ENS de Lyon, UCB Lyon 1, CNRS, INRAE, Inria, 69342 Lyon, France; IRBV, Department of Biological Sciences, University of Montreal, Montreal, QC, Canada
| | - Aurélie Fangain
- Laboratoire Reproduction et Développement des Plantes (RDP), Université de Lyon, ENS de Lyon, UCB Lyon 1, CNRS, INRAE, Inria, 69342 Lyon, France
| | - Romain Azaïs
- Laboratoire Reproduction et Développement des Plantes (RDP), Université de Lyon, ENS de Lyon, UCB Lyon 1, CNRS, INRAE, Inria, 69342 Lyon, France
| | - Olivier Ali
- Laboratoire Reproduction et Développement des Plantes (RDP), Université de Lyon, ENS de Lyon, UCB Lyon 1, CNRS, INRAE, Inria, 69342 Lyon, France.
| | - Marie-Cécile Caillaud
- Laboratoire Reproduction et Développement des Plantes (RDP), Université de Lyon, ENS de Lyon, UCB Lyon 1, CNRS, INRAE, Inria, 69342 Lyon, France.
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2
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Tanaka S, Matsushita Y, Hanaki Y, Higaki T, Kamamoto N, Matsushita K, Higashiyama T, Fujimoto K, Ueda M. HD-ZIP IV genes are essential for embryo initial cell polarization and the radial axis formation in Arabidopsis. Curr Biol 2024; 34:4639-4649.e4. [PMID: 39303713 DOI: 10.1016/j.cub.2024.08.038] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/21/2024] [Revised: 08/02/2024] [Accepted: 08/21/2024] [Indexed: 09/22/2024]
Abstract
Plants develop along apical-basal and radial axes. In Arabidopsis thaliana, the radial axis becomes evident when the cells of the 8-cell proembryo divide periclinally, forming inner and outer cell layers. Although changes in cell polarity or morphology likely precede this oriented cell division, the initial events and the factors regulating radial axis formation remain elusive. Here, we report that three transcription factors belonging to the class IV homeodomain-leucine zipper (HD-ZIP IV) family redundantly regulate radial pattern formation: HOMEODOMAIN GLABROUS11 (HDG11), HDG12, and PROTODERMAL FACTOR2 (PDF2). The hdg11 hdg12 pdf2 triple mutant failed to undergo periclinal division at the 8-cell stage and cell differentiation along the radial axis. Live-cell imaging revealed that the mutant defect is already evident in the behavior of the embryo's initial cell (apical cell), which is generated by zygote division. In the wild type, the apical cell grows longitudinally and then radially, and its nucleus remains at the bottom of the cell, where the vertical cell plate emerges. By contrast, the mutant apical cell elongates longitudinally, and its nucleus releases from its basal position, resulting in a transverse division. Computer simulations based on the live-cell imaging data confirmed the importance of the geometric rule (the minimal plane principle and nucleus-passing principle) in determining the cell division plane. We propose that HDG11, HDG12, and PDF2 promote apical cell polarization, i.e., radial cell growth and basal nuclear retention, and set proper radial axis formation during embryogenesis.
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Affiliation(s)
- Sayuri Tanaka
- Division of Biological Science, Graduate School of Science, Nagoya University, Nagoya 464-8602, Japan
| | - Yuuki Matsushita
- Program of Mathematical and Life Sciences, Hiroshima University, 1-3-1 Kagamiyama, Higashi-Hiroshima 739-8526, Hiroshima, Japan; Simons Centre for the Study of Living Machines, National Centre for Biological Sciences, Bellary Road, Bangalore 560 065, Karnataka, India
| | - Yuga Hanaki
- Graduate School of Life Sciences, Tohoku University, Sendai 980-8578, Japan
| | - Takumi Higaki
- Faculty of Advanced Science and Technology, Kumamoto University, Kumamoto 860-8555, Japan; International Research Organization for Advanced Science and Technology, Kumamoto University, Kumamoto 860-8555, Japan
| | - Naoya Kamamoto
- Program of Mathematical and Life Sciences, Hiroshima University, 1-3-1 Kagamiyama, Higashi-Hiroshima 739-8526, Hiroshima, Japan
| | - Katsuyoshi Matsushita
- Program of Mathematical and Life Sciences, Hiroshima University, 1-3-1 Kagamiyama, Higashi-Hiroshima 739-8526, Hiroshima, Japan
| | - Tetsuya Higashiyama
- Division of Biological Science, Graduate School of Science, Nagoya University, Nagoya 464-8602, Japan; Department of Biological Sciences, Graduate School of Science University of Tokyo, Tokyo 113-0033, Japan; Institute of Transformative Bio-Molecules (ITbM), Nagoya University, Furo-cho, Chikusa-ku, Nagoya 464-8601, Aichi, Japan
| | - Koichi Fujimoto
- Program of Mathematical and Life Sciences, Hiroshima University, 1-3-1 Kagamiyama, Higashi-Hiroshima 739-8526, Hiroshima, Japan
| | - Minako Ueda
- Division of Biological Science, Graduate School of Science, Nagoya University, Nagoya 464-8602, Japan; Graduate School of Life Sciences, Tohoku University, Sendai 980-8578, Japan; Institute of Transformative Bio-Molecules (ITbM), Nagoya University, Furo-cho, Chikusa-ku, Nagoya 464-8601, Aichi, Japan; Suntory Rising Stars Encouragement Program in Life Sciences (SunRiSE), Kyoto 619-0284, Japan.
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3
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Melogno I, Takatani S, Llanos P, Goncalves C, Kodera C, Martin M, Lionnet C, Uyttewaal M, Pastuglia M, Trehin C, Bouchez D, Dumais J, Hamant O. A transient radial cortical microtubule array primes cell division in Arabidopsis. Proc Natl Acad Sci U S A 2024; 121:e2320470121. [PMID: 38990951 PMCID: PMC11260093 DOI: 10.1073/pnas.2320470121] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/21/2023] [Accepted: 05/23/2024] [Indexed: 07/13/2024] Open
Abstract
Although the formation of new walls during plant cell division tends to follow maximal tensile stress direction, analyses of individual cells over time reveal a much more variable behavior. The origin of such variability as well as the exact role of interphasic microtubule behavior before cell division have remained mysterious so far. To approach this question, we took advantage of the Arabidopsis stem, where the tensile stress pattern is both highly anisotropic and stable. Although cortical microtubules (CMTs) generally align with maximal tensile stress, we detected a specific time window, ca. 3 h before cell division, where cells form a radial pattern of CMTs. This microtubule array organization preceded preprophase band (PPB) formation, a transient CMT array predicting the position of the future division plane. It was observed under different growth conditions and was not related to cell geometry or polar auxin transport. Interestingly, this cortical radial pattern correlated with the well-documented increase of cytoplasmic microtubule accumulation before cell division. This radial organization was prolonged in cells of the trm678 mutant, where CMTs are unable to form a PPB. Whereas division plane orientation in trm678 is noisier, we found that cell division symmetry was in contrast less variable between daughter cells. We propose that this "radial step" reflects a trade-off in robustness for two essential cell division attributes: symmetry and orientation. This involves a "reset" stage in G2, where an increased cytoplasmic microtubule accumulation transiently disrupts CMT alignment with tissue stress.
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Affiliation(s)
- Isaty Melogno
- Laboratoire de Reproduction et Développement des Plantes, Université de Lyon, Ecole Normale Supérieure de Lyon, Université Claude Bernard Lyon 1, Institut national de recherche pour l’agriculture, l’alimentation et l’environnement (INRAE), CNRS, 69364Lyon Cedex 07, France
| | - Shogo Takatani
- Laboratoire de Reproduction et Développement des Plantes, Université de Lyon, Ecole Normale Supérieure de Lyon, Université Claude Bernard Lyon 1, Institut national de recherche pour l’agriculture, l’alimentation et l’environnement (INRAE), CNRS, 69364Lyon Cedex 07, France
- Department of Biological Science, Graduate School of Science, Nagoya University, Nagoya464-8602, Japan
| | - Paula Llanos
- Faculty of Engineering and Sciences, Universidad Adolfo Ibáñez, Viña del Mar2520000, Chile
| | - Coralie Goncalves
- Université Paris-Saclay, INRAE, AgroParisTech, Institute Jean-Pierre Bourgin for Plant Sciences (IJPB), Versailles78000, France
| | - Chie Kodera
- Université Paris-Saclay, INRAE, AgroParisTech, Institute Jean-Pierre Bourgin for Plant Sciences (IJPB), Versailles78000, France
| | - Marjolaine Martin
- Laboratoire de Reproduction et Développement des Plantes, Université de Lyon, Ecole Normale Supérieure de Lyon, Université Claude Bernard Lyon 1, Institut national de recherche pour l’agriculture, l’alimentation et l’environnement (INRAE), CNRS, 69364Lyon Cedex 07, France
| | - Claire Lionnet
- Laboratoire de Reproduction et Développement des Plantes, Université de Lyon, Ecole Normale Supérieure de Lyon, Université Claude Bernard Lyon 1, Institut national de recherche pour l’agriculture, l’alimentation et l’environnement (INRAE), CNRS, 69364Lyon Cedex 07, France
| | - Magalie Uyttewaal
- Université Paris-Saclay, INRAE, AgroParisTech, Institute Jean-Pierre Bourgin for Plant Sciences (IJPB), Versailles78000, France
| | - Martine Pastuglia
- Université Paris-Saclay, INRAE, AgroParisTech, Institute Jean-Pierre Bourgin for Plant Sciences (IJPB), Versailles78000, France
| | - Christophe Trehin
- Laboratoire de Reproduction et Développement des Plantes, Université de Lyon, Ecole Normale Supérieure de Lyon, Université Claude Bernard Lyon 1, Institut national de recherche pour l’agriculture, l’alimentation et l’environnement (INRAE), CNRS, 69364Lyon Cedex 07, France
| | - David Bouchez
- Université Paris-Saclay, INRAE, AgroParisTech, Institute Jean-Pierre Bourgin for Plant Sciences (IJPB), Versailles78000, France
| | - Jacques Dumais
- Faculty of Engineering and Sciences, Universidad Adolfo Ibáñez, Viña del Mar2520000, Chile
| | - Olivier Hamant
- Laboratoire de Reproduction et Développement des Plantes, Université de Lyon, Ecole Normale Supérieure de Lyon, Université Claude Bernard Lyon 1, Institut national de recherche pour l’agriculture, l’alimentation et l’environnement (INRAE), CNRS, 69364Lyon Cedex 07, France
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4
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Bouchez D, Uyttewaal M, Pastuglia M. Spatiotemporal regulation of plant cell division. CURRENT OPINION IN PLANT BIOLOGY 2024; 79:102530. [PMID: 38631088 DOI: 10.1016/j.pbi.2024.102530] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/12/2024] [Revised: 03/13/2024] [Accepted: 03/21/2024] [Indexed: 04/19/2024]
Abstract
Plant morphogenesis largely depends on the orientation and rate of cell division and elongation, and their coordination at all levels of organization. Despite recent progresses in the comprehension of pathways controlling division plane determination in plant cells, many pieces are missing to the puzzle. For example, we have a partial comprehension of formation, function and evolutionary significance of the preprophase band, a plant-specific cytoskeletal array involved in premitotic setup of the division plane, as well as the role of the nucleus and its connection to the preprophase band of microtubules. Likewise, several modeling studies point to a strong relationship between cell shape and division geometry, but the emergence of such geometric rules from the molecular and cellular pathways at play are still obscure. Yet, recent imaging technologies and genetic tools hold a lot of promise to tackle these challenges and to revisit old questions with unprecedented resolution in space and time.
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Affiliation(s)
- David Bouchez
- Université Paris-Saclay, INRAE, AgroParisTech, Institut Jean-Pierre Bourgin (IJPB), Versailles 78000, France.
| | - Magalie Uyttewaal
- Université Paris-Saclay, INRAE, AgroParisTech, Institut Jean-Pierre Bourgin (IJPB), Versailles 78000, France
| | - Martine Pastuglia
- Université Paris-Saclay, INRAE, AgroParisTech, Institut Jean-Pierre Bourgin (IJPB), Versailles 78000, France
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5
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Laruelle E, Palauqui JC, Andrey P, Trubuil A. TreeJ: an ImageJ plugin for interactive cell lineage reconstruction from static images. PLANT METHODS 2023; 19:128. [PMID: 37974271 PMCID: PMC10655406 DOI: 10.1186/s13007-023-01106-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/15/2022] [Accepted: 11/08/2023] [Indexed: 11/19/2023]
Abstract
BACKGROUND With the emergence of deep-learning methods, tools are needed to capture and standardize image annotations made by experimentalists. In developmental biology, cell lineages are generally reconstructed from time-lapse data. However, some tissues need to be fixed to be accessible or to improve the staining. In this case, classical software do not offer the possibility of generating any lineage. Because of their rigid cell walls, plants present the advantage of keeping traces of the cell division history over successive generations in the cell patterns. To record this information despite having only a static image, dedicated tools are required. RESULTS We developed an interface to assist users in the building and editing of a lineage tree from a 3D labeled image. Each cell within the tree can be tagged. From the created tree, cells of a sub-tree or cells sharing the same tag can be extracted. The tree can be exported in a format compatible with dedicated software for advanced graph visualization and manipulation. CONCLUSIONS The TreeJ plugin for ImageJ/Fiji allows the user to generate and manipulate a lineage tree structure. The tree is compatible with other software to analyze the tree organization at the graphical level and at the cell pattern level. The code source is available at https://github.com/L-EL/TreeJ .
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Affiliation(s)
- Elise Laruelle
- Université Paris-Saclay, INRAE, AgroParisTech, Institut Jean-Pierre Bourgin (IJPB), Route de Saint Cyr, 78000, Versailles, France.
- MaIAGE, INRAE, Université Paris-Saclay, Domaine de Vilvert, 78350, Jouy-en-josas, France.
- Sainsbury Laboratory, Cambridge University, Bateman Street, CB2 1LR, Cambridge, UK.
| | - Jean-Christophe Palauqui
- Université Paris-Saclay, INRAE, AgroParisTech, Institut Jean-Pierre Bourgin (IJPB), Route de Saint Cyr, 78000, Versailles, France
| | - Philippe Andrey
- Université Paris-Saclay, INRAE, AgroParisTech, Institut Jean-Pierre Bourgin (IJPB), Route de Saint Cyr, 78000, Versailles, France
| | - Alain Trubuil
- MaIAGE, INRAE, Université Paris-Saclay, Domaine de Vilvert, 78350, Jouy-en-josas, France
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6
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Theodorou I, Charrier B. The shift to 3D growth during embryogenesis of kelp species, atlas of cell division and differentiation of Saccharina latissima. Development 2023; 150:dev201519. [PMID: 37882832 PMCID: PMC10660787 DOI: 10.1242/dev.201519] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/08/2022] [Accepted: 09/12/2023] [Indexed: 10/27/2023]
Abstract
In most organisms, 3D growth takes place at the onset of embryogenesis. In some brown algae, 3D growth occurs later in development, when the organism consists of several hundred cells. We studied the cellular events that take place when 3D growth is established in the embryo of the brown alga Saccharina, a kelp species. Semi-thin sections, taken from where growth shifts from 2D to 3D, show that 3D growth first initiates from symmetrical cell division in the monolayered lamina, and then is enhanced through a series of asymmetrical cell divisions in a peripheral monolayer of cells called the meristoderm. Then, daughter cells rapidly differentiate into cortical and medullary cells, characterised by their position, size and shape. In essence, 3D growth in kelps is based on a series of differentiation steps that occur rapidly after the initiation of a bilayered lamina, followed by further growth of the established differentiated tissues. Our study depicts the cellular landscape necessary to study cell-fate programming in the context of a novel mode of 3D growth in an organism phylogenetically distant from plants and animals.
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Affiliation(s)
- Ioannis Theodorou
- Laboratory of Integrative Marine Models, Station Biologique de Roscoff, UMR8227, CNRS, Sorbonne University, Place Georges Teissier, 29680 Roscoff, France
- Plant Sciences Department, Faculty of Biosciences, Norwegian University of Life Sciences, NO-1432 Ås, Norway
| | - Bénédicte Charrier
- Laboratory of Integrative Marine Models, Station Biologique de Roscoff, UMR8227, CNRS, Sorbonne University, Place Georges Teissier, 29680 Roscoff, France
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7
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Marconi M, Wabnik K. Computer models of cell polarity establishment in plants. PLANT PHYSIOLOGY 2023; 193:42-53. [PMID: 37144853 PMCID: PMC10469401 DOI: 10.1093/plphys/kiad264] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/07/2023] [Revised: 03/30/2023] [Accepted: 04/14/2023] [Indexed: 05/06/2023]
Abstract
Plant development is a complex task, and many processes involve changes in the asymmetric subcellular distribution of cell components that strongly depend on cell polarity. Cell polarity regulates anisotropic growth and polar localization of membrane proteins and helps to identify the cell's position relative to its neighbors within an organ. Cell polarity is critical in a variety of plant developmental processes, including embryogenesis, cell division, and response to external stimuli. The most conspicuous downstream effect of cell polarity is the polar transport of the phytohormone auxin, which is the only known hormone transported in a polar fashion in and out of cells by specialized exporters and importers. The biological processes behind the establishment of cell polarity are still unknown, and researchers have proposed several models that have been tested using computer simulations. The evolution of computer models has progressed in tandem with scientific discoveries, which have highlighted the importance of genetic, chemical, and mechanical input in determining cell polarity and regulating polarity-dependent processes such as anisotropic growth, protein subcellular localization, and the development of organ shapes. The purpose of this review is to provide a comprehensive overview of the current understanding of computer models of cell polarity establishment in plants, focusing on the molecular and cellular mechanisms, the proteins involved, and the current state of the field.
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Affiliation(s)
- Marco Marconi
- Centro de Biotecnología y Genómica de Plantas, Universidad Politécnica de Madrid (UPM)-Instituto Nacional de Investigación Agraria y Alimentaria (INIA/CSIC), Campus de Montegancedo, Pozuelo de Alarcón, Madrid, Spain
| | - Krzysztof Wabnik
- Centro de Biotecnología y Genómica de Plantas, Universidad Politécnica de Madrid (UPM)-Instituto Nacional de Investigación Agraria y Alimentaria (INIA/CSIC), Campus de Montegancedo, Pozuelo de Alarcón, Madrid, Spain
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8
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Ashraf MA, Liu L, Facette MR. A polarized nuclear position specifies the correct division plane during maize stomatal development. PLANT PHYSIOLOGY 2023; 193:125-139. [PMID: 37300534 DOI: 10.1093/plphys/kiad329] [Citation(s) in RCA: 8] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/23/2022] [Revised: 04/25/2023] [Accepted: 05/10/2023] [Indexed: 06/12/2023]
Abstract
Asymmetric cell division generates different cell types and is a feature of development in multicellular organisms. Prior to asymmetric cell division, cell polarity is established. Maize (Zea mays) stomatal development serves as an excellent plant model system for asymmetric cell division, especially the asymmetric division of the subsidiary mother cell (SMC). In SMCs, the nucleus migrates to a polar location after the accumulation of polarly localized proteins but before the appearance of the preprophase band. We examined a mutant of an outer nuclear membrane protein that is part of the LINC (linker of nucleoskeleton and cytoskeleton) complex that localizes to the nuclear envelope in interphase cells. Previously, maize linc kash sine-like2 (mlks2) was observed to have abnormal stomata. We confirmed and identified the precise defects that lead to abnormal asymmetric divisions. Proteins that are polarly localized in SMCs prior to division polarized normally in mlks2. However, polar localization of the nucleus was sometimes impaired, even in cells that have otherwise normal polarity. This led to a misplaced preprophase band and atypical division planes. MLKS2 localized to mitotic structures; however, the structure of the preprophase band, spindle, and phragmoplast appeared normal in mlks2. Time-lapse imaging revealed that mlks2 has defects in premitotic nuclear migration toward the polarized site and unstable position at the division site after formation of the preprophase band. Overall, our results show that nuclear envelope proteins promote premitotic nuclear migration and stable nuclear position and that the position of the nucleus influences division plane establishment in asymmetrically dividing cells.
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Affiliation(s)
- M Arif Ashraf
- Department of Biology, University of Massachusetts Amherst, Amherst, MA 01003, USA
| | - Le Liu
- Department of Biology, University of Massachusetts Amherst, Amherst, MA 01003, USA
- Plant Biology Program, University of Massachusetts Amherst, Amherst, MA 01003, USA
| | - Michelle R Facette
- Department of Biology, University of Massachusetts Amherst, Amherst, MA 01003, USA
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9
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Uyehara AN, Rasmussen CG. Redundant mechanisms in division plane positioning. Eur J Cell Biol 2023; 102:151308. [PMID: 36921356 DOI: 10.1016/j.ejcb.2023.151308] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/26/2023] [Revised: 03/05/2023] [Accepted: 03/11/2023] [Indexed: 03/18/2023] Open
Abstract
Redundancies in plant cell division contribute to the maintenance of proper division plane orientation. Here we highlight three types of redundancy: 1) Temporal redundancy, or correction of earlier defects that results in proper final positioning, 2) Genetic redundancy, or functional compensation by homologous genes, and 3) Synthetic redundancy, or redundancy within or between pathways that contribute to proper division plane orientation. Understanding the types of redundant mechanisms involved provides insight into current models of division plane orientation and opens up new avenues for exploration.
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Affiliation(s)
- Aimee N Uyehara
- Department of Botany and Plant Sciences, Center for Plant Cell Biology, University of California, Riverside, USA
| | - Carolyn G Rasmussen
- Department of Botany and Plant Sciences, Center for Plant Cell Biology, University of California, Riverside, USA.
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10
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Ishikawa M, Fujiwara A, Kosetsu K, Horiuchi Y, Kamamoto N, Umakawa N, Tamada Y, Zhang L, Matsushita K, Palfalvi G, Nishiyama T, Kitasaki S, Masuda Y, Shiroza Y, Kitagawa M, Nakamura T, Cui H, Hiwatashi Y, Kabeya Y, Shigenobu S, Aoyama T, Kato K, Murata T, Fujimoto K, Benfey PN, Hasebe M, Kofuji R. GRAS transcription factors regulate cell division planes in moss overriding the default rule. Proc Natl Acad Sci U S A 2023; 120:e2210632120. [PMID: 36669117 PMCID: PMC9942845 DOI: 10.1073/pnas.2210632120] [Citation(s) in RCA: 10] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/22/2022] [Accepted: 11/30/2022] [Indexed: 01/22/2023] Open
Abstract
Plant cells are surrounded by a cell wall and do not migrate, which makes the regulation of cell division orientation crucial for development. Regulatory mechanisms controlling cell division orientation may have contributed to the evolution of body organization in land plants. The GRAS family of transcription factors was transferred horizontally from soil bacteria to an algal common ancestor of land plants. SHORTROOT (SHR) and SCARECROW (SCR) genes in this family regulate formative periclinal cell divisions in the roots of flowering plants, but their roles in nonflowering plants and their evolution have not been studied in relation to body organization. Here, we show that SHR cell autonomously inhibits formative periclinal cell divisions indispensable for leaf vein formation in the moss Physcomitrium patens, and SHR expression is positively and negatively regulated by SCR and the GRAS member LATERAL SUPPRESSOR, respectively. While precursor cells of a leaf vein lacking SHR usually follow the geometry rule of dividing along the division plane with the minimum surface area, SHR overrides this rule and forces cells to divide nonpericlinally. Together, these results imply that these bacterially derived GRAS transcription factors were involved in the establishment of the genetic regulatory networks modulating cell division orientation in the common ancestor of land plants and were later adapted to function in flowering plant and moss lineages for their specific body organizations.
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Affiliation(s)
- Masaki Ishikawa
- Division of Evolutionary Biology, National Institute for Basic Biology, Okazaki444-8585, Japan
- Department of Basic Biology, The Graduate School for Advanced Studies (SOKENDAI), Okazaki444-8585, Japan
| | - Ayaka Fujiwara
- Graduate School of Natural Science and Technology, Kanazawa University, Kanazawa920-1192, Japan
| | - Ken Kosetsu
- Division of Evolutionary Biology, National Institute for Basic Biology, Okazaki444-8585, Japan
- Department of Basic Biology, The Graduate School for Advanced Studies (SOKENDAI), Okazaki444-8585, Japan
| | - Yuta Horiuchi
- Division of Evolutionary Biology, National Institute for Basic Biology, Okazaki444-8585, Japan
- Department of Basic Biology, The Graduate School for Advanced Studies (SOKENDAI), Okazaki444-8585, Japan
| | - Naoya Kamamoto
- Department of Biological Sciences, Graduate School of Science, Osaka University, Toyonaka560-0043, Japan
| | - Naoyuki Umakawa
- Graduate School of Natural Science and Technology, Kanazawa University, Kanazawa920-1192, Japan
| | - Yosuke Tamada
- Division of Evolutionary Biology, National Institute for Basic Biology, Okazaki444-8585, Japan
- Department of Basic Biology, The Graduate School for Advanced Studies (SOKENDAI), Okazaki444-8585, Japan
- School of Engineering, Utsunomiya University, Utsunomiya321-8585, Japan
| | - Liechi Zhang
- Division of Evolutionary Biology, National Institute for Basic Biology, Okazaki444-8585, Japan
- Department of Basic Biology, The Graduate School for Advanced Studies (SOKENDAI), Okazaki444-8585, Japan
| | - Katsuyoshi Matsushita
- Department of Biological Sciences, Graduate School of Science, Osaka University, Toyonaka560-0043, Japan
| | - Gergo Palfalvi
- Division of Evolutionary Biology, National Institute for Basic Biology, Okazaki444-8585, Japan
- Department of Basic Biology, The Graduate School for Advanced Studies (SOKENDAI), Okazaki444-8585, Japan
| | - Tomoaki Nishiyama
- Division of Integrated Omics Research, Research Center for Experimental Modeling of Human Disease, Kanazawa University, Kanazawa920-0934, Japan
| | - Sota Kitasaki
- Graduate School of Natural Science and Technology, Kanazawa University, Kanazawa920-1192, Japan
| | - Yuri Masuda
- Department of Biology, Kanazawa University, Kanazawa920-1192, Japan
| | - Yoshiki Shiroza
- Graduate School of Natural Science and Technology, Kanazawa University, Kanazawa920-1192, Japan
| | | | - Toru Nakamura
- Graduate School of Natural Science and Technology, Kanazawa University, Kanazawa920-1192, Japan
| | - Hongchang Cui
- Department of Biology, Duke University, Durham, NC27516
- HHMI, Duke University, Durham, NC27516
- Department of Biological Science, Florida State University, Tallahassee, FL32306-4295
| | - Yuji Hiwatashi
- Division of Evolutionary Biology, National Institute for Basic Biology, Okazaki444-8585, Japan
- Department of Basic Biology, The Graduate School for Advanced Studies (SOKENDAI), Okazaki444-8585, Japan
- School of Food Industrial Sciences, Miyagi University, Sendai982-0215, Japan
| | - Yukiko Kabeya
- Division of Evolutionary Biology, National Institute for Basic Biology, Okazaki444-8585, Japan
| | - Shuji Shigenobu
- Division of Evolutionary Biology, National Institute for Basic Biology, Okazaki444-8585, Japan
- Department of Basic Biology, The Graduate School for Advanced Studies (SOKENDAI), Okazaki444-8585, Japan
| | - Tsuyoshi Aoyama
- Division of Evolutionary Biology, National Institute for Basic Biology, Okazaki444-8585, Japan
| | - Kagayaki Kato
- Bioimage Informatics Group, Exploratory Research Center on Life and Living Systems (ExCELLS), National Institutes of Natural Sciences, Okazaki444-8585, Japan
- Interdisciplinary Research Unit, National Institute for Basic Biology, Okazaki444-8585, Japan
| | - Takashi Murata
- Division of Evolutionary Biology, National Institute for Basic Biology, Okazaki444-8585, Japan
- Department of Basic Biology, The Graduate School for Advanced Studies (SOKENDAI), Okazaki444-8585, Japan
- Department of Applied Bioscience, Kanagawa Institute of Technology, Atsugi243-0292, Japan
| | - Koichi Fujimoto
- Department of Biological Sciences, Graduate School of Science, Osaka University, Toyonaka560-0043, Japan
| | - Philip N. Benfey
- Department of Biological Science, Florida State University, Tallahassee, FL32306-4295
| | - Mitsuyasu Hasebe
- Division of Evolutionary Biology, National Institute for Basic Biology, Okazaki444-8585, Japan
- Department of Basic Biology, The Graduate School for Advanced Studies (SOKENDAI), Okazaki444-8585, Japan
| | - Rumiko Kofuji
- Graduate School of Natural Science and Technology, Kanazawa University, Kanazawa920-1192, Japan
- Department of Biology, Kanazawa University, Kanazawa920-1192, Japan
- Faculty of Biological Science and Technology, Institute of Science and Engineering, Kanazawa University, Kanazawa920-1192, Japan
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11
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Chen P, Levy DL. Regulation of organelle size and organization during development. Semin Cell Dev Biol 2023; 133:53-64. [PMID: 35148938 PMCID: PMC9357868 DOI: 10.1016/j.semcdb.2022.02.002] [Citation(s) in RCA: 13] [Impact Index Per Article: 6.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/15/2021] [Revised: 01/20/2022] [Accepted: 02/01/2022] [Indexed: 12/11/2022]
Abstract
During early embryogenesis, as cells divide in the developing embryo, the size of intracellular organelles generally decreases to scale with the decrease in overall cell size. Organelle size scaling is thought to be important to establish and maintain proper cellular function, and defective scaling may lead to impaired development and disease. However, how the cell regulates organelle size and organization are largely unanswered questions. In this review, we summarize the process of size scaling at both the cell and organelle levels and discuss recently discovered mechanisms that regulate this process during early embryogenesis. In addition, we describe how some recently developed techniques and Xenopus as an animal model can be used to investigate the underlying mechanisms of size regulation and to uncover the significance of proper organelle size scaling and organization.
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Affiliation(s)
- Pan Chen
- Institute of Biochemistry and Molecular Biology, School of Medicine, Ningbo University, Ningbo, Zhejiang 315211, China.
| | - Daniel L Levy
- Department of Molecular Biology, University of Wyoming, Laramie, WY 82071, USA.
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12
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Laruelle E, Belcram K, Trubuil A, Palauqui JC, Andrey P. Large-scale analysis and computer modeling reveal hidden regularities behind variability of cell division patterns in Arabidopsis thaliana embryogenesis. eLife 2022; 11:79224. [DOI: 10.7554/elife.79224] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/04/2022] [Accepted: 11/07/2022] [Indexed: 11/30/2022] Open
Abstract
Noise plays a major role in cellular processes and in the development of tissues and organs. Several studies have examined the origin, the integration or the accommodation of noise in gene expression, cell growth and elaboration of organ shape. By contrast, much less is known about variability in cell division plane positioning, its origin and links with cell geometry, and its impact on tissue organization. Taking advantage of the first-stereotyped-then-variable division patterns in the embryo of the model plant Arabidopsis thaliana, we combined 3D imaging and quantitative cell shape and cell lineage analysis together with mathematical and computer modeling to perform a large-scale, systematic analysis of variability in division plane orientation. Our results reveal that, paradoxically, variability in cell division patterns of Arabidopsis embryos is accompanied by a progressive reduction of heterogeneity in cell shape topology. The paradox is solved by showing that variability operates within a reduced repertoire of possible division plane orientations that is related to cell geometry. We show that in several domains of the embryo, a recently proposed geometrical division rule recapitulates observed variable patterns, suggesting that variable patterns emerge from deterministic principles operating in a variable geometrical context. Our work highlights the importance of emerging patterns in the plant embryo under iterated division principles, but also reveal domains where deviations between rule predictions and experimental observations point to additional regulatory mechanisms.
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Affiliation(s)
- Elise Laruelle
- Université Paris-Saclay, INRAE, AgroParisTech, Institut Jean-Pierre Bourgin
- Université Paris-Saclay, INRAE, MaIAGE
| | - Katia Belcram
- Université Paris-Saclay, INRAE, AgroParisTech, Institut Jean-Pierre Bourgin
| | | | | | - Philippe Andrey
- Université Paris-Saclay, INRAE, AgroParisTech, Institut Jean-Pierre Bourgin
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13
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Mills AM, Rasmussen CG. Defects in division plane positioning in the root meristematic zone affect cell organization in the differentiation zone. J Cell Sci 2022; 135:jcs260127. [PMID: 36074053 PMCID: PMC9658997 DOI: 10.1242/jcs.260127] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/19/2022] [Accepted: 09/01/2022] [Indexed: 11/20/2022] Open
Abstract
Cell-division-plane orientation is critical for plant and animal development and growth. TANGLED1 (TAN1) and AUXIN-INDUCED IN ROOT CULTURES 9 (AIR9) are division-site-localized microtubule-binding proteins required for division-plane positioning. The single mutants tan1 and air9 of Arabidopsis thaliana have minor or no noticeable phenotypes, but the tan1 air9 double mutant has synthetic phenotypes including stunted growth, misoriented divisions and aberrant cell-file rotation in the root differentiation zone. These data suggest that TAN1 plays a role in non-dividing cells. To determine whether TAN1 is required in elongating and differentiating cells in the tan1 air9 double mutant, we limited its expression to actively dividing cells using the G2/M-specific promoter of the syntaxin KNOLLE (pKN:TAN1-YFP). Unexpectedly, in addition to rescuing division-plane defects, expression of pKN:TAN1-YFP rescued root growth and cell file rotation defects in the root-differentiation zone in tan1 air9 double mutants. This suggests that defects that occur in the meristematic zone later affect the organization of elongating and differentiating cells.
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Affiliation(s)
| | - Carolyn G. Rasmussen
- Graduate Group in Biochemistry and Molecular Biology
- Department of Botany and Plant Sciences, Center for Plant Cell Biology, Institute of Integrative Genome Biology, University of California, Riverside, CA 92521, USA
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14
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Yoshida S, Weijers D. Quantitative analysis of 3D cellular geometry and modeling of the Arabidopsis embryo. J Microsc 2022; 287:107-113. [PMID: 35759505 DOI: 10.1111/jmi.13130] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/15/2022] [Revised: 06/17/2022] [Accepted: 06/22/2022] [Indexed: 11/30/2022]
Abstract
As many multicellular organisms, land plants start their life as a single cell, which forms an embryo. Embryo morphology is relatively simple, yet comprises basic tissues and organs, as well as stem cells that sustain post-embryonic development. Being condensed in both time and space, early plant embryogenesis offers an excellent window to study general principles of plant development. However, it has been technically challenging to obtain high spatial microscopic resolution, or to perform live imaging, that would enable an in-depth investigation. Recent advances in sample preparation and microscopy now allow studying the detailed cellular morphology of plant embryos in 3D. When coupled to quantitative image analysis and computational modeling, this allows resolving the temporal and spatial interactions between cellular patterning and genetic networks. In this review, we discuss examples of interdisciplinary studies that showcase the potential of the early plant embryo for revealing principles underlying plant development. This article is protected by copyright. All rights reserved.
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Affiliation(s)
- Saiko Yoshida
- Department of Comparative Development and Genetics, Max Planck Institute for Plant Breeding Research, Carl-von-Linné-Weg 10, Köln, D-50829, Germany
| | - Dolf Weijers
- Laboratory of Biochemistry, Wageningen University
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15
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Yi P, Goshima G. Division site determination during asymmetric cell division in plants. THE PLANT CELL 2022; 34:2120-2139. [PMID: 35201345 PMCID: PMC9134084 DOI: 10.1093/plcell/koac069] [Citation(s) in RCA: 12] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/15/2021] [Accepted: 02/20/2022] [Indexed: 05/19/2023]
Abstract
During development, both animals and plants exploit asymmetric cell division (ACD) to increase tissue complexity, a process that usually generates cells dissimilar in size, morphology, and fate. Plants lack the key regulators that control ACD in animals. Instead, plants have evolved two unique cytoskeletal structures to tackle this problem: the preprophase band (PPB) and phragmoplast. The assembly of the PPB and phragmoplast and their contributions to division plane orientation have been extensively studied. However, how the division plane is positioned off the cell center during asymmetric division is poorly understood. Over the past 20 years, emerging evidence points to a critical role for polarly localized membrane proteins in this process. Although many of these proteins are species- or cell type specific, and the molecular mechanism underlying division asymmetry is not fully understood, common features such as morphological changes in cells, cytoskeletal dynamics, and nuclear positioning have been observed. In this review, we provide updates on polarity establishment and nuclear positioning during ACD in plants. Together with previous findings about symmetrically dividing cells and the emerging roles of developmental cues, we aim to offer evolutionary insight into a common framework for asymmetric division-site determination and highlight directions for future work.
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Affiliation(s)
- Peishan Yi
- Key Laboratory of Bio-Resource and Eco-Environment of Ministry of Education, College of Life Sciences, Sichuan University, Chengdu, Sichuan 610065, China
| | - Gohta Goshima
- Sugashima Marine Biological Laboratory, Graduate School of Science, Nagoya University, Toba 517-0004, Japan
- Division of Biological Science, Graduate School of Science, Nagoya University, Nagoya Aichi 464-8602, Japan
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16
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Sablowski R, Gutierrez C. Cycling in a crowd: Coordination of plant cell division, growth, and cell fate. THE PLANT CELL 2022; 34:193-208. [PMID: 34498091 PMCID: PMC8774096 DOI: 10.1093/plcell/koab222] [Citation(s) in RCA: 38] [Impact Index Per Article: 12.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 06/02/2021] [Accepted: 08/31/2021] [Indexed: 05/25/2023]
Abstract
The reiterative organogenesis that drives plant growth relies on the constant production of new cells, which remain encased by interconnected cell walls. For these reasons, plant morphogenesis strictly depends on the rate and orientation of both cell division and cell growth. Important progress has been made in recent years in understanding how cell cycle progression and the orientation of cell divisions are coordinated with cell and organ growth and with the acquisition of specialized cell fates. We review basic concepts and players in plant cell cycle and division, and then focus on their links to growth-related cues, such as metabolic state, cell size, cell geometry, and cell mechanics, and on how cell cycle progression and cell division are linked to specific cell fates. The retinoblastoma pathway has emerged as a major player in the coordination of the cell cycle with both growth and cell identity, while microtubule dynamics are central in the coordination of oriented cell divisions. Future challenges include clarifying feedbacks between growth and cell cycle progression, revealing the molecular basis of cell division orientation in response to mechanical and chemical signals, and probing the links between cell fate changes and chromatin dynamics during the cell cycle.
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Affiliation(s)
| | - Crisanto Gutierrez
- Centro de Biología Molecular Severo Ochoa, CSIC-UAM, Nicolas Cabrera 1, Cantoblanco, 28049 Madrid, Spain
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17
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Vaddepalli P, de Zeeuw T, Strauss S, Bürstenbinder K, Liao CY, Ramalho JJ, Smith RS, Weijers D. Auxin-dependent control of cytoskeleton and cell shape regulates division orientation in the Arabidopsis embryo. Curr Biol 2021; 31:4946-4955.e4. [PMID: 34610273 PMCID: PMC8612740 DOI: 10.1016/j.cub.2021.09.019] [Citation(s) in RCA: 18] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/09/2021] [Revised: 07/22/2021] [Accepted: 09/07/2021] [Indexed: 11/25/2022]
Abstract
Premitotic control of cell division orientation is critical for plant development, as cell walls prevent extensive cell remodeling or migration. While many divisions are proliferative and add cells to existing tissues, some divisions are formative and generate new tissue layers or growth axes. Such formative divisions are often asymmetric in nature, producing daughters with different fates. We have previously shown that, in the Arabidopsis thaliana embryo, developmental asymmetry is correlated with geometric asymmetry, creating daughter cells of unequal volume. Such divisions are generated by division planes that deviate from a default “minimal surface area” rule. Inhibition of auxin response leads to reversal to this default, yet the mechanisms underlying division plane choice in the embryo have been unclear. Here, we show that auxin-dependent division plane control involves alterations in cell geometry, but not in cell polarity axis or nuclear position. Through transcriptome profiling, we find that auxin regulates genes controlling cell wall and cytoskeleton properties. We confirm the involvement of microtubule (MT)-binding proteins in embryo division control. Organization of both MT and actin cytoskeleton depends on auxin response, and genetically controlled MT or actin depolymerization in embryos leads to disruption of asymmetric divisions, including reversion to the default. Our work shows how auxin-dependent control of MT and actin cytoskeleton properties interacts with cell geometry to generate asymmetric divisions during the earliest steps in plant development. Auxin responses regulate directional cell expansion in Arabidopsis embryos Cell shape and division orientation are tightly coupled Transcriptome analysis identifies MT-associated IQD proteins in division control Cytoskeletal dynamics control division orientation
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Affiliation(s)
- Prasad Vaddepalli
- Laboratory of Biochemistry, Wageningen University, Stippeneng 4, 6708 Wageningen, the Netherlands.
| | - Thijs de Zeeuw
- Laboratory of Biochemistry, Wageningen University, Stippeneng 4, 6708 Wageningen, the Netherlands
| | - Sören Strauss
- Department of Comparative Development and Genetics, Max Planck Institute for Plant Breeding Research, Carl-von-Linne-Weg 10, Cologne, Germany
| | - Katharina Bürstenbinder
- Department of Molecular Signal Processing, Leibniz Institute of Plant Biochemistry, Weinberg 3, Halle (Saale), Germany
| | - Che-Yang Liao
- Laboratory of Biochemistry, Wageningen University, Stippeneng 4, 6708 Wageningen, the Netherlands
| | - João Jacob Ramalho
- Laboratory of Biochemistry, Wageningen University, Stippeneng 4, 6708 Wageningen, the Netherlands
| | - Richard S Smith
- Department of Comparative Development and Genetics, Max Planck Institute for Plant Breeding Research, Carl-von-Linne-Weg 10, Cologne, Germany; John Innes Centre, Norwich Research Park, Norwich NR4 7UH, UK
| | - Dolf Weijers
- Laboratory of Biochemistry, Wageningen University, Stippeneng 4, 6708 Wageningen, the Netherlands.
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18
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Li Z, Sela A, Fridman Y, Garstka L, Höfte H, Savaldi-Goldstein S, Wolf S. Optimal BR signalling is required for adequate cell wall orientation in the Arabidopsis root meristem. Development 2021; 148:273348. [PMID: 34739031 PMCID: PMC8627601 DOI: 10.1242/dev.199504] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/05/2021] [Accepted: 10/04/2021] [Indexed: 11/20/2022]
Abstract
Plant brassinosteroid hormones (BRs) regulate growth in part through altering the properties of the cell wall, the extracellular matrix of plant cells. Conversely, feedback signalling from the wall connects the state of cell wall homeostasis to the BR receptor complex and modulates BR activity. Here, we report that both pectin-triggered cell wall signalling and impaired BR signalling result in altered cell wall orientation in the Arabidopsis root meristem. Furthermore, both depletion of endogenous BRs and exogenous supply of BRs triggered these defects. Cell wall signalling-induced alterations in the orientation of newly placed walls appear to occur late during cytokinesis, after initial positioning of the cortical division zone. Tissue-specific perturbations of BR signalling revealed that the cellular malfunction is unrelated to previously described whole organ growth defects. Thus, tissue type separates the pleiotropic effects of cell wall/BR signals and highlights their importance during cell wall placement. Summary: Both increased and reduced BR signalling strength results in altered cell wall orientation in the Arabidopsis root, uncoupled from whole-root growth control.
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Affiliation(s)
- Zhenni Li
- Department of Cell Biology, Centre for Organismal Studies Heidelberg, Heidelberg University, Im Neuenheimer Feld 230, 69120 Heidelberg, Germany
| | - Ayala Sela
- Plant Biology Laboratory, Technion-Israel Institute of Technology, Haifa 3200003, Israel
| | - Yulia Fridman
- Plant Biology Laboratory, Technion-Israel Institute of Technology, Haifa 3200003, Israel
| | - Lucía Garstka
- Department of Cell Biology, Centre for Organismal Studies Heidelberg, Heidelberg University, Im Neuenheimer Feld 230, 69120 Heidelberg, Germany
| | - Herman Höfte
- Department of Development, Signalling, and Modelling, Institut Jean-Pierre Bourgin, INRA, AgroParisTech, CNRS, Université Paris-Saclay, 78000 Versailles, France
| | | | - Sebastian Wolf
- Department of Cell Biology, Centre for Organismal Studies Heidelberg, Heidelberg University, Im Neuenheimer Feld 230, 69120 Heidelberg, Germany.,Department of Plant Biochemistry, Centre for Plant Molecular Biology (ZMBP), Eberhard Karls University, D-72076 Tübingen, Germany
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19
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Studying Cell Division Plane Positioning in Early-Stage Embryos. Methods Mol Biol 2021. [PMID: 34705238 DOI: 10.1007/978-1-0716-1744-1_9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register]
Abstract
Unraveling the mechanisms that govern division plane orientation is a major challenge to understand plant development. In this respect, the Arabidopsis early embryo is a model system of choice since embryogenesis is relatively simple and cell division planes orientation is highly predictable. Here we present an integrated set of protocols to study 3D cell division patterns in early-stage Arabidopsis embryos that combine both cellular and sub-cellular localization of selected protein markers with spatial organization of cells, cytoskeleton, and nuclei.
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20
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Marconi M, Wabnik K. Shaping the Organ: A Biologist Guide to Quantitative Models of Plant Morphogenesis. FRONTIERS IN PLANT SCIENCE 2021; 12:746183. [PMID: 34675952 PMCID: PMC8523991 DOI: 10.3389/fpls.2021.746183] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 07/23/2021] [Accepted: 09/09/2021] [Indexed: 06/13/2023]
Abstract
Organ morphogenesis is the process of shape acquisition initiated with a small reservoir of undifferentiated cells. In plants, morphogenesis is a complex endeavor that comprises a large number of interacting elements, including mechanical stimuli, biochemical signaling, and genetic prerequisites. Because of the large body of data being produced by modern laboratories, solving this complexity requires the application of computational techniques and analyses. In the last two decades, computational models combined with wet-lab experiments have advanced our understanding of plant organ morphogenesis. Here, we provide a comprehensive review of the most important achievements in the field of computational plant morphodynamics. We present a brief history from the earliest attempts to describe plant forms using algorithmic pattern generation to the evolution of quantitative cell-based models fueled by increasing computational power. We then provide an overview of the most common types of "digital plant" paradigms, and demonstrate how models benefit from diverse techniques used to describe cell growth mechanics. Finally, we highlight the development of computational frameworks designed to resolve organ shape complexity through integration of mechanical, biochemical, and genetic cues into a quantitative standardized and user-friendly environment.
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Affiliation(s)
| | - Krzysztof Wabnik
- Centro de Biotecnología y Genómica de Plantas, Universidad Politécnica de Madrid (UPM) - Instituto Nacional de Investigación y Tecnología Agraria y Alimentaria (INIA), Pozuelo de Alarcón (Madrid), Spain
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21
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Robinson S. Mechanobiology of cell division in plant growth. THE NEW PHYTOLOGIST 2021; 231:559-564. [PMID: 33774836 DOI: 10.1111/nph.17369] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/13/2020] [Accepted: 03/10/2021] [Indexed: 06/12/2023]
Abstract
Cell division in plants is particularly important as cells cannot rearrange. It therefore determines the arrangement of cells (topology) and their size and shape (geometry). Cell division reduces mechanical stress locally by producing smaller cells and alters mechanical properties by reinforcing the mechanical wall network, both of which can alter overall tissue morphology. Division orientation is often regarded as following geometric rules, however recent work has suggested that divisions align with the direction of maximal tensile stress. Mechanical stress has already been shown to feed into many processes of development including those that alter mechanical properties. Such an alignment may enable cell division to selectively reinforce the cell wall network in the direction of maximal tensile stress. Therefore there exists potential feedback between cell division, mechanical stress and growth. Improving our understanding of this topic will help to shed light on the debated role of cell division in organ scale growth.
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Affiliation(s)
- Sarah Robinson
- Sainsbury Laboratory, Cambridge University, Bateman St., Cambridge, CB2 1LR, UK
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22
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Autran D, Bassel GW, Chae E, Ezer D, Ferjani A, Fleck C, Hamant O, Hartmann FP, Jiao Y, Johnston IG, Kwiatkowska D, Lim BL, Mahönen AP, Morris RJ, Mulder BM, Nakayama N, Sozzani R, Strader LC, ten Tusscher K, Ueda M, Wolf S. What is quantitative plant biology? QUANTITATIVE PLANT BIOLOGY 2021; 2:e10. [PMID: 37077212 PMCID: PMC10095877 DOI: 10.1017/qpb.2021.8] [Citation(s) in RCA: 13] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 11/03/2020] [Revised: 04/07/2021] [Accepted: 04/07/2021] [Indexed: 05/03/2023]
Abstract
Quantitative plant biology is an interdisciplinary field that builds on a long history of biomathematics and biophysics. Today, thanks to high spatiotemporal resolution tools and computational modelling, it sets a new standard in plant science. Acquired data, whether molecular, geometric or mechanical, are quantified, statistically assessed and integrated at multiple scales and across fields. They feed testable predictions that, in turn, guide further experimental tests. Quantitative features such as variability, noise, robustness, delays or feedback loops are included to account for the inner dynamics of plants and their interactions with the environment. Here, we present the main features of this ongoing revolution, through new questions around signalling networks, tissue topology, shape plasticity, biomechanics, bioenergetics, ecology and engineering. In the end, quantitative plant biology allows us to question and better understand our interactions with plants. In turn, this field opens the door to transdisciplinary projects with the society, notably through citizen science.
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Affiliation(s)
- Daphné Autran
- DIADE, University of Montpellier, IRD, CIRAD, Montpellier, France
| | - George W. Bassel
- School of Life Sciences, University of Warwick, Coventry, United Kingdom
| | - Eunyoung Chae
- Department of Biological Sciences, National University of Singapore, Singapore, Singapore
| | - Daphne Ezer
- The Alan Turing Institute, London, United Kingdom
- Department of Statistics, University of Warwick, Coventry, United Kingdom
- Department of Biology, University of York, York, United Kingdom
| | - Ali Ferjani
- Department of Biology, Tokyo Gakugei University, Tokyo, Japan
| | - Christian Fleck
- Freiburg Center for Data Analysis and Modeling (FDM), University of Freiburg, Breisgau, Germany
| | - Olivier Hamant
- Laboratoire de Reproduction et Développement des Plantes, École normale supérieure (ENS) de Lyon, Université Claude Bernard Lyon (UCBL), Lyon, France
- Institut national de recherche pour l’agriculture, l’alimentation et l’environnement (INRAE), CNRS, Université de Lyon, Lyon, France
| | | | - Yuling Jiao
- State Key Laboratory of Plant Genomics and National Center for Plant Gene Research (Beijing), Institute of Genetics and Developmental Biology, The Innovative Academy of Seed Design, Chinese Academy of Sciences, Beijing, China
- University of Chinese Academy of Sciences, Beijing, China
| | | | - Dorota Kwiatkowska
- Institute of Biology, Biotechnology and Environment Protection, Faculty of Natural Sciences, University of Silesia in Katowice, Katowice, Poland
| | - Boon L. Lim
- School of Biological Sciences, University of Hong Kong, Hong Kong, China
| | - Ari Pekka Mahönen
- Institute of Biotechnology, HiLIFE, University of Helsinki, Helsinki, Finland
- Organismal and Evolutionary Biology Research Programme, Faculty of Biological and Environmental Sciences, University of Helsinki, Helsinki, Finland
- Viikki Plant Science Centre, University of Helsinki, Helsinki, Finland
| | - Richard J. Morris
- Computational and Systems Biology, John Innes Centre, Norwich, United Kingdom
| | - Bela M. Mulder
- Department of Living Matter, Institute AMOLF, Amsterdam, The Netherlands
| | - Naomi Nakayama
- Department of Bioengineering, Imperial College London, London, United Kingdom
| | - Ross Sozzani
- Department of Plant and Microbial Biology, North Carolina State University, Raleigh, North CarolinaUSA
| | - Lucia C. Strader
- Department of Biology, Duke University, Durham, North Carolina, USA
- NSF Science and Technology Center for Engineering Mechanobiology, Department of Biology, Washington University in St. Louis, St. Louis, MissouriUSA
| | - Kirsten ten Tusscher
- Theoretical Biology, Department of Biology, Utrecht University, Utrecht, The Netherlands
| | - Minako Ueda
- Graduate School of Life Sciences, Tohoku University, Sendai, Japan
| | - Sebastian Wolf
- Centre for Organismal Studies (COS) Heidelberg, Heidelberg University, Heidelberg, Germany
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Harnvanichvech Y, Gorelova V, Sprakel J, Weijers D. The Arabidopsis embryo as a quantifiable model for studying pattern formation. QUANTITATIVE PLANT BIOLOGY 2021; 2:e3. [PMID: 37077211 PMCID: PMC10095805 DOI: 10.1017/qpb.2021.3] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 11/02/2020] [Revised: 02/15/2021] [Accepted: 02/21/2021] [Indexed: 05/03/2023]
Abstract
Phenotypic diversity of flowering plants stems from common basic features of the plant body pattern with well-defined body axes, organs and tissue organisation. Cell division and cell specification are the two processes that underlie the formation of a body pattern. As plant cells are encased into their cellulosic walls, directional cell division through precise positioning of division plane is crucial for shaping plant morphology. Since many plant cells are pluripotent, their fate establishment is influenced by their cellular environment through cell-to-cell signaling. Recent studies show that apart from biochemical regulation, these two processes are also influenced by cell and tissue morphology and operate under mechanical control. Finding a proper model system that allows dissecting the relationship between these aspects is the key to our understanding of pattern establishment. In this review, we present the Arabidopsis embryo as a simple, yet comprehensive model of pattern formation compatible with high-throughput quantitative assays.
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Affiliation(s)
- Yosapol Harnvanichvech
- Physical Chemistry and Soft Matter, Wageningen University, Wageningen, The Netherlands
- Laboratory of Biochemistry, Wageningen University, Wageningen, The Netherlands
| | - Vera Gorelova
- Laboratory of Biochemistry, Wageningen University, Wageningen, The Netherlands
| | - Joris Sprakel
- Physical Chemistry and Soft Matter, Wageningen University, Wageningen, The Netherlands
| | - Dolf Weijers
- Laboratory of Biochemistry, Wageningen University, Wageningen, The Netherlands
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24
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Véron E, Vernoux T, Coudert Y. Phyllotaxis from a Single Apical Cell. TRENDS IN PLANT SCIENCE 2021; 26:124-131. [PMID: 33097400 DOI: 10.1016/j.tplants.2020.09.014] [Citation(s) in RCA: 18] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/22/2020] [Revised: 09/21/2020] [Accepted: 09/25/2020] [Indexed: 05/27/2023]
Abstract
Phyllotaxis, the geometry of leaf arrangement around stems, determines plant architecture. Molecular interactions coordinating the formation of phyllotactic patterns have mainly been studied in multicellular shoot apical meristems of flowering plants. Phyllotaxis evolved independently in the major land plant lineages. In mosses, it arises from a single apical cell, raising the question of how asymmetric divisions of a single-celled meristem create phyllotactic patterns and whether associated genetic processes are shared across lineages. We present an overview of the mechanisms governing shoot apical cell specification and activity in the model moss, Physcomitrium patens, and argue that similar molecular regulatory modules have been deployed repeatedly across evolution to operate at different scales and drive apical function in convergent shoot forms.
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Affiliation(s)
- Elsa Véron
- Laboratoire Reproduction et Développement des Plantes, Université de Lyon, ENS de Lyon, UCB Lyon 1, CNRS, INRA, INRIA, Lyon 69007, France
| | - Teva Vernoux
- Laboratoire Reproduction et Développement des Plantes, Université de Lyon, ENS de Lyon, UCB Lyon 1, CNRS, INRA, INRIA, Lyon 69007, France.
| | - Yoan Coudert
- Laboratoire Reproduction et Développement des Plantes, Université de Lyon, ENS de Lyon, UCB Lyon 1, CNRS, INRA, INRIA, Lyon 69007, France.
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25
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Serra L, Robinson S. Plant cell divisions: variations from the shortest symmetric path. Biochem Soc Trans 2020; 48:2743-2752. [PMID: 33336690 PMCID: PMC7752081 DOI: 10.1042/bst20200529] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/13/2020] [Revised: 11/13/2020] [Accepted: 11/17/2020] [Indexed: 02/08/2023]
Abstract
In plants, the spatial arrangement of cells within tissues and organs is a direct consequence of the positioning of the new cell walls during cell division. Since the nineteenth century, scientists have proposed rules to explain the orientation of plant cell divisions. Most of these rules predict the new wall will follow the shortest path passing through the cell centroid halving the cell into two equal volumes. However, in some developmental contexts, divisions deviate significantly from this rule. In these situations, mechanical stress, hormonal signalling, or cell polarity have been described to influence the division path. Here we discuss the mechanism and subcellular structure required to define the cell division placement then we provide an overview of the situations where division deviates from the shortest symmetric path.
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Affiliation(s)
- Léo Serra
- The Sainsbury Laboratory, University of Cambridge, Cambridge CB2 1LR, U.K
| | - Sarah Robinson
- The Sainsbury Laboratory, University of Cambridge, Cambridge CB2 1LR, U.K
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26
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Chen H, Qian W, Good MC. Integrating cellular dimensions with cell differentiation during early development. Curr Opin Cell Biol 2020; 67:109-117. [PMID: 33152556 DOI: 10.1016/j.ceb.2020.08.004] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/27/2020] [Revised: 07/14/2020] [Accepted: 08/03/2020] [Indexed: 11/25/2022]
Abstract
Early embryo development is characterized by alteration of cellular dimensions and fating of blastomeres. An emerging concept is that cell size and shape drive cellular differentiation during early embryogenesis in a variety of model organisms. In this review, we summarize recent advances that elucidate the contribution of the physical dimensions of a cell to major embryonic transitions and cell fate specification in vivo. We also highlight techniques and newly evolving methods for manipulating the sizes and shapes of cells and whole embryos in situ and ex vivo. Finally, we provide an outlook for addressing fundamental questions in the field and more broadly uncovering how changes to cell size control decision making in a variety of biological contexts.
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Affiliation(s)
- Hui Chen
- Department of Cell and Developmental Biology, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA
| | - Wenchao Qian
- Department of Cell and Developmental Biology, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA
| | - Matthew C Good
- Department of Cell and Developmental Biology, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA; Department of Bioengineering, School of Engineering and Applied Science, University of Pennsylvania, Philadelphia, PA 19104, USA.
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27
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Opposing, Polarity-Driven Nuclear Migrations Underpin Asymmetric Divisions to Pattern Arabidopsis Stomata. Curr Biol 2020; 30:4467-4475.e4. [PMID: 32946753 DOI: 10.1016/j.cub.2020.08.100] [Citation(s) in RCA: 24] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/12/2020] [Revised: 08/13/2020] [Accepted: 08/27/2020] [Indexed: 11/20/2022]
Abstract
Multicellular development depends on generating and precisely positioning distinct cell types within tissues. During leaf development, pores in the epidermis called stomata are spaced at least one cell apart for optimal gas exchange. This pattern is primarily driven by iterative asymmetric cell divisions (ACDs) in stomatal progenitors, which generate most of the cells in the tissue. A plasma membrane-associated polarity crescent defined by BREAKING OF ASYMMETRY IN THE STOMATAL LINEAGE (BASL) and BREVIS RADIX family (BRXf) proteins is required for asymmetric divisions and proper stomatal pattern, but the cellular mechanisms that orient ACDs remain unclear. Here, utilizing long-term, quantitative time-lapse microscopy, we identified two oppositely oriented nuclear migrations that precede and succeed ACD during epidermal patterning. The pre- and post-division migrations are dependent on microtubules and actin, respectively, and the polarity crescent is the unifying landmark that is both necessary and sufficient to orient both nuclear migrations. We identified a specific and essential role for MYOXI-I in controlling post-ACD nuclear migration. Loss of MYOXI-I decreases stomatal density, owing to an inability to accurately orient a specific subset of ACDs. Taken together, our analyses revealed successive and polarity-driven nuclear migrations that regulate ACD orientation in the Arabidopsis stomatal lineage.
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28
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Kondratenko SI, Pasternak TP, Samovol OP, Mogilna OM, Sergienko OV. Modeling of asymmetric division of somatic cell in protoplasts culture of higher plants. REGULATORY MECHANISMS IN BIOSYSTEMS 2020. [DOI: 10.15421/022038] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/05/2022] Open
Abstract
The key result of the work is the selection of factors for the cultivation of protoplasts of higher plants in vitro, which allowed induction of asymmetrical cell division during the first cell cycle phase. Gibberellin has been proved to be one of the main cofactors of asymmetric division of plant cells. The objects of research were plants of the following cultivars aseptically grown in hormone-free MS medium: tobacco (Nicotiana tabacum L.), SR-1 line; Arabidopsis thaliana var. columbia (L.) Heynh; potato (Solanum tuberosum L.), Zarevo cultivar; cultivated white head cabbage (Brassica oleraceae var. capitata L.) of the following varieties: Kharkivska zymnia, Ukrainska osin, Yaroslavna, Lika, Lesya, Bilosnizhka, Dithmarscher Früher, Iyunskarannya; rape (Brassica napus L.) of Shpat cultivar; winter radish (Raphanus sativus L.) of Odessa-5 cultivar. In experiments with mesophilic and hypocotyl protoplasts of the above-mentioned plant species it has been proved that short-term osmotic stress within 16–18 hours being combined with subsequent introduction of high doses of gibberellin GK3 (1 mg/L) into the modified liquid nutrient media TM and SW led to the occurrence of pronounced morphological traits of cytodifferentiation already at the initial stages of the development of mitotically active cells in a number of higher plants. Meanwhile, in all analyzed species, there was observed the division of the initial genetically homogeneous population of mitotically active cells into two types of asymmetric division: by the type of division of the mother cell into smaller daughter cells and by the type of the first asymmetric division of the zygotic embryo in planta. In this case, the first type of asymmetric division occurred during unusual cytomorphism of the mother cells: a pronounced heart-shaped form even before the first division, which is inherent in the morphology of somatic plant embryo in vitro at the heart-shaped stage. A particular study of the effect of osmotic stress influencing protoplasts of various cultivars of white cabbage, isolated from hypocotyls of 7–9 day etiolated seedlings, revealed quite a typical consistent pattern: the acquisition and maintenance of the axis of symmetry in growing microcolonies occurred without extra exogenous gibberellin (GK3), which was added to the nutrient medium earlier. While analyzing the effect of growth regulators on the formation of microcolonies with traits of structural organization, the conclusion was made regarding the commonality of the revealed morphogenetic reactions of cells within the culture of protoplasts of higher plants in vitro with similar reactions studied earlier on other plants, both in vitro and in planta. Modeling of asymmetric cell division in protoplast culture in vitro has become possible by carrying out a balanced selection of growth regulators as well as their coordinated application through time along with changes in osmotic pressure of a nutrient medium.
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29
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Evolution, Initiation, and Diversity in Early Plant Embryogenesis. Dev Cell 2019; 50:533-543. [DOI: 10.1016/j.devcel.2019.07.011] [Citation(s) in RCA: 24] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/24/2019] [Revised: 06/07/2019] [Accepted: 07/07/2019] [Indexed: 11/22/2022]
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