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For: Wu D, Raymond J, Wu M, Chatterji S, Ren Q, Graham JE, Bryant DA, Robb F, Colman A, Tallon LJ, Badger JH, Madupu R, Ward NL, Eisen JA. Complete genome sequence of the aerobic CO-oxidizing thermophile Thermomicrobium roseum. PLoS One 2009;4:e4207. [PMID: 19148287 PMCID: PMC2615216 DOI: 10.1371/journal.pone.0004207] [Citation(s) in RCA: 83] [Impact Index Per Article: 5.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/23/2008] [Accepted: 11/07/2008] [Indexed: 12/02/2022]  Open
Number Cited by Other Article(s)
1
Dawson RA, Fantom N, Martin-Pozas T, Aguila P, King GM, Hernández M. Carbon monoxide-oxidising Pseudomonadota on volcanic deposits. ENVIRONMENTAL MICROBIOME 2025;20:12. [PMID: 39865271 PMCID: PMC11771112 DOI: 10.1186/s40793-025-00672-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/30/2024] [Accepted: 01/11/2025] [Indexed: 01/28/2025]
2
Fantom N, Dawson RA, Prondvai E, Constant P, King GM, Schäfer H, Hernández M. Metabolism of CO and H2 by pioneer bacteria in volcanic soils and the phyllosphere. THE ISME JOURNAL 2025;19:wraf053. [PMID: 40089988 PMCID: PMC12021596 DOI: 10.1093/ismejo/wraf053] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/18/2024] [Revised: 03/10/2025] [Accepted: 03/14/2025] [Indexed: 03/18/2025]
3
Zayulina KS, Podosokorskaya OA, Klyukina AA, Panova TV, Novikov AA, Kublanov IV, Bonch-Osmolovskaya EA, Elcheninov AG. A Novel Species of the Genus Thermanaerothrix Isolated from a Kamchatka Hot Spring Possesses Hydrolytic Capabilities. Curr Microbiol 2024;81:293. [PMID: 39090416 DOI: 10.1007/s00284-024-03815-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/09/2024] [Accepted: 07/20/2024] [Indexed: 08/04/2024]
4
Aqel H, Farah H, Al-Hunaiti A. Ecological versatility and biotechnological promise: Comprehensive characterization of the isolated thermophilic Bacillus strains. PLoS One 2024;19:e0297217. [PMID: 38635692 PMCID: PMC11025799 DOI: 10.1371/journal.pone.0297217] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/26/2023] [Accepted: 12/29/2023] [Indexed: 04/20/2024]  Open
5
Demergasso C, Neilson JW, Tebes-Cayo C, Véliz R, Ayma D, Laubitz D, Barberán A, Chong-Díaz G, Maier RM. Hyperarid soil microbial community response to simulated rainfall. Front Microbiol 2023;14:1202266. [PMID: 37779711 PMCID: PMC10537920 DOI: 10.3389/fmicb.2023.1202266] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/07/2023] [Accepted: 07/31/2023] [Indexed: 10/03/2023]  Open
6
Kamada S, Wakabayashi R, Naganuma T. Phylogenetic Revisit to a Review on Predatory Bacteria. Microorganisms 2023;11:1673. [PMID: 37512846 PMCID: PMC10385382 DOI: 10.3390/microorganisms11071673] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/29/2023] [Revised: 06/22/2023] [Accepted: 06/26/2023] [Indexed: 07/30/2023]  Open
7
Huang Y, Li L, Yin X, Zhang T. Polycyclic aromatic hydrocarbon (PAH) biodegradation capacity revealed by a genome-function relationship approach. ENVIRONMENTAL MICROBIOME 2023;18:39. [PMID: 37122013 PMCID: PMC10150532 DOI: 10.1186/s40793-023-00497-7] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/12/2023] [Accepted: 04/26/2023] [Indexed: 05/03/2023]
8
Back to Basics: A Simplified Improvement to Multiple Displacement Amplification for Microbial Single-Cell Genomics. Int J Mol Sci 2023;24:ijms24054270. [PMID: 36901710 PMCID: PMC10002425 DOI: 10.3390/ijms24054270] [Citation(s) in RCA: 10] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/31/2022] [Revised: 01/23/2023] [Accepted: 02/15/2023] [Indexed: 02/25/2023]  Open
9
Diessner EM, Takahashi GR, Martin RW, Butts CT. Comparative Modeling and Analysis of Extremophilic D-Ala-D-Ala Carboxypeptidases. Biomolecules 2023;13:328. [PMID: 36830697 PMCID: PMC9953012 DOI: 10.3390/biom13020328] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/10/2022] [Revised: 01/21/2023] [Accepted: 02/02/2023] [Indexed: 02/11/2023]  Open
10
Allioux M, Yvenou S, Merkel A, Cozannet M, Aubé J, Pommellec J, Le Romancer M, Lavastre V, Guillaume D, Alain K. A metagenomic insight into the microbiomes of geothermal springs in the Subantarctic Kerguelen Islands. Sci Rep 2022;12:22243. [PMID: 36564496 PMCID: PMC9789041 DOI: 10.1038/s41598-022-26299-4] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/05/2022] [Accepted: 12/13/2022] [Indexed: 12/24/2022]  Open
11
Su W, Han Q, Yang J, Yu Q, Wang S, Wang X, Qu J, Li H. Heavy rainfall accelerates the temporal turnover but decreases the deterministic processes of buried gravesoil bacterial communities. THE SCIENCE OF THE TOTAL ENVIRONMENT 2022;836:155732. [PMID: 35526627 DOI: 10.1016/j.scitotenv.2022.155732] [Citation(s) in RCA: 11] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/23/2022] [Revised: 05/01/2022] [Accepted: 05/02/2022] [Indexed: 06/14/2023]
12
Salwan R, Sharma V. Genomics of Prokaryotic Extremophiles to Unfold the Mystery of Survival in Extreme Environments. Microbiol Res 2022;264:127156. [DOI: 10.1016/j.micres.2022.127156] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/26/2022] [Revised: 07/30/2022] [Accepted: 07/31/2022] [Indexed: 11/26/2022]
13
Greening C, Grinter R. Microbial oxidation of atmospheric trace gases. Nat Rev Microbiol 2022;20:513-528. [PMID: 35414013 DOI: 10.1038/s41579-022-00724-x] [Citation(s) in RCA: 49] [Impact Index Per Article: 16.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 03/11/2022] [Indexed: 02/06/2023]
14
Wilson CK, King GM. Short-Term Exposure to Thermophilic Temperatures Facilitates CO Uptake by Thermophiles Maintained under Predominantly Mesophilic Conditions. Microorganisms 2022;10:656. [PMID: 35336231 PMCID: PMC8953250 DOI: 10.3390/microorganisms10030656] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/01/2022] [Revised: 03/02/2022] [Accepted: 03/10/2022] [Indexed: 01/27/2023]  Open
15
Stress Dependent Biofilm Formation and Bioactive Melanin Pigment Production by a Thermophilic Bacillus Species from Chilean Hot Spring. Polymers (Basel) 2022;14:polym14040680. [PMID: 35215592 PMCID: PMC8880475 DOI: 10.3390/polym14040680] [Citation(s) in RCA: 15] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/30/2022] [Revised: 02/05/2022] [Accepted: 02/07/2022] [Indexed: 12/02/2022]  Open
16
Gao Q, Shao J, Tang M, Xin Y, Zhang L. Promote the expression and corrected folding of an extremely stable N-demethylase by promoter reconstruction, native environment simulation and surface design. Int J Biol Macromol 2021;178:434-443. [PMID: 33647338 DOI: 10.1016/j.ijbiomac.2021.02.176] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/06/2020] [Revised: 02/01/2021] [Accepted: 02/23/2021] [Indexed: 01/10/2023]
17
Kawai S, Martinez JN, Lichtenberg M, Trampe E, Kühl M, Tank M, Haruta S, Nishihara A, Hanada S, Thiel V. In-Situ Metatranscriptomic Analyses Reveal the Metabolic Flexibility of the Thermophilic Anoxygenic Photosynthetic Bacterium Chloroflexus aggregans in a Hot Spring Cyanobacteria-Dominated Microbial Mat. Microorganisms 2021;9:microorganisms9030652. [PMID: 33801086 PMCID: PMC8004040 DOI: 10.3390/microorganisms9030652] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/28/2021] [Revised: 03/17/2021] [Accepted: 03/17/2021] [Indexed: 12/13/2022]  Open
18
Microbial single-cell omics: the crux of the matter. Appl Microbiol Biotechnol 2020;104:8209-8220. [PMID: 32845367 PMCID: PMC7471194 DOI: 10.1007/s00253-020-10844-0] [Citation(s) in RCA: 29] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/15/2020] [Revised: 08/08/2020] [Accepted: 08/17/2020] [Indexed: 01/10/2023]
19
Sheremet A, Jones GM, Jarett J, Bowers RM, Bedard I, Culham C, Eloe-Fadrosh EA, Ivanova N, Malmstrom RR, Grasby SE, Woyke T, Dunfield PF. Ecological and genomic analyses of candidate phylum WPS-2 bacteria in an unvegetated soil. Environ Microbiol 2020;22:3143-3157. [PMID: 32372527 DOI: 10.1111/1462-2920.15054] [Citation(s) in RCA: 27] [Impact Index Per Article: 5.4] [Reference Citation Analysis] [Abstract] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/26/2019] [Revised: 04/28/2020] [Accepted: 04/29/2020] [Indexed: 12/01/2022]
20
Kochetkova TV, Zayulina KS, Zhigarkov VS, Minaev NV, Chichkov BN, Novikov AA, Toshchakov SV, Elcheninov AG, Kublanov IV. Tepidiforma bonchosmolovskayae gen. nov., sp. nov., a moderately thermophilic Chloroflexi bacterium from a Chukotka hot spring (Arctic, Russia), representing a novel class, Tepidiformia, which includes the previously uncultivated lineage OLB14. Int J Syst Evol Microbiol 2020;70:1192-1202. [PMID: 31769750 DOI: 10.1099/ijsem.0.003902] [Citation(s) in RCA: 28] [Impact Index Per Article: 5.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]  Open
21
Knapik K, Becerra M, González-Siso MI. Microbial diversity analysis and screening for novel xylanase enzymes from the sediment of the Lobios Hot Spring in Spain. Sci Rep 2019;9:11195. [PMID: 31371784 PMCID: PMC6671963 DOI: 10.1038/s41598-019-47637-z] [Citation(s) in RCA: 26] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/28/2019] [Accepted: 07/11/2019] [Indexed: 01/28/2023]  Open
22
Atmospheric carbon monoxide oxidation is a widespread mechanism supporting microbial survival. ISME JOURNAL 2019;13:2868-2881. [PMID: 31358912 PMCID: PMC6794299 DOI: 10.1038/s41396-019-0479-8] [Citation(s) in RCA: 107] [Impact Index Per Article: 17.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 04/26/2019] [Revised: 06/22/2019] [Accepted: 06/28/2019] [Indexed: 11/09/2022]
23
Zheng Y, Saitou A, Wang CM, Toyoda A, Minakuchi Y, Sekiguchi Y, Ueda K, Takano H, Sakai Y, Abe K, Yokota A, Yabe S. Genome Features and Secondary Metabolites Biosynthetic Potential of the Class Ktedonobacteria. Front Microbiol 2019;10:893. [PMID: 31080444 PMCID: PMC6497799 DOI: 10.3389/fmicb.2019.00893] [Citation(s) in RCA: 42] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/18/2019] [Accepted: 04/08/2019] [Indexed: 12/30/2022]  Open
24
Two Chloroflexi classes independently evolved the ability to persist on atmospheric hydrogen and carbon monoxide. ISME JOURNAL 2019;13:1801-1813. [PMID: 30872805 PMCID: PMC6776052 DOI: 10.1038/s41396-019-0393-0] [Citation(s) in RCA: 90] [Impact Index Per Article: 15.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 10/30/2018] [Revised: 01/21/2019] [Accepted: 02/20/2019] [Indexed: 11/29/2022]
25
Soluble expression of Thermomicrobium roseum sarcosine oxidase and characterization of N-demethylation activity. MOLECULAR CATALYSIS 2019. [DOI: 10.1016/j.mcat.2018.12.021] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
26
Campbell IJ, Bennett GN, Silberg JJ. Evolutionary Relationships Between Low Potential Ferredoxin and Flavodoxin Electron Carriers. FRONTIERS IN ENERGY RESEARCH 2019;7:10.3389/fenrg.2019.00079. [PMID: 32095484 PMCID: PMC7039249 DOI: 10.3389/fenrg.2019.00079] [Citation(s) in RCA: 32] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/08/2023]
27
Robb FT, Techtmann SM. Life on the fringe: microbial adaptation to growth on carbon monoxide. F1000Res 2018;7. [PMID: 30647903 PMCID: PMC6317499 DOI: 10.12688/f1000research.16059.1] [Citation(s) in RCA: 31] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Accepted: 12/19/2018] [Indexed: 12/27/2022]  Open
28
Engqvist MKM. Correlating enzyme annotations with a large set of microbial growth temperatures reveals metabolic adaptations to growth at diverse temperatures. BMC Microbiol 2018;18:177. [PMID: 30400856 PMCID: PMC6219164 DOI: 10.1186/s12866-018-1320-7] [Citation(s) in RCA: 47] [Impact Index Per Article: 6.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/06/2018] [Accepted: 10/16/2018] [Indexed: 12/15/2022]  Open
29
Tomazini A, Lal S, Munir R, Stott M, Henrissat B, Polikarpov I, Sparling R, Levin DB. Analysis of carbohydrate-active enzymes in Thermogemmatispora sp. strain T81 reveals carbohydrate degradation ability. Can J Microbiol 2018;64:992-1003. [PMID: 30338698 DOI: 10.1139/cjm-2018-0336] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
30
Mehrshad M, Salcher MM, Okazaki Y, Nakano SI, Šimek K, Andrei AS, Ghai R. Hidden in plain sight-highly abundant and diverse planktonic freshwater Chloroflexi. MICROBIOME 2018;6:176. [PMID: 30285851 PMCID: PMC6169038 DOI: 10.1186/s40168-018-0563-8] [Citation(s) in RCA: 72] [Impact Index Per Article: 10.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/22/2018] [Accepted: 09/21/2018] [Indexed: 05/19/2023]
31
Chuzel L, Ganatra MB, Rapp E, Henrissat B, Taron CH. Functional metagenomics identifies an exosialidase with an inverting catalytic mechanism that defines a new glycoside hydrolase family (GH156). J Biol Chem 2018;293:18138-18150. [PMID: 30249617 PMCID: PMC6254351 DOI: 10.1074/jbc.ra118.003302] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/06/2018] [Revised: 09/11/2018] [Indexed: 12/24/2022]  Open
32
Mehrshad M, Rodriguez-Valera F, Amoozegar MA, López-García P, Ghai R. The enigmatic SAR202 cluster up close: shedding light on a globally distributed dark ocean lineage involved in sulfur cycling. THE ISME JOURNAL 2018;12:655-668. [PMID: 29208946 PMCID: PMC5864207 DOI: 10.1038/s41396-017-0009-5] [Citation(s) in RCA: 63] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 01/09/2017] [Revised: 06/21/2017] [Accepted: 07/24/2017] [Indexed: 11/09/2022]
33
Sokolova TG, Yakimov MM, Chernyh NA, Lun’kova EY, Kostrikina NA, Taranov EA, Lebedinskii AV, Bonch-Osmolovskaya EA. Aerobic carbon monoxide oxidation in the course of growth of a hyperthermophilic archaeon, Sulfolobus sp. ETSY. Microbiology (Reading) 2017. [DOI: 10.1134/s0026261717050174] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]  Open
34
Ferla MP, Brewster JL, Hall KR, Evans GB, Patrick WM. Primordial‐like enzymes from bacteria with reduced genomes. Mol Microbiol 2017. [DOI: 10.1111/mmi.13737] [Citation(s) in RCA: 26] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/31/2023]
35
Tripathi BM, Moroenyane I, Sherman C, Lee YK, Adams JM, Steinberger Y. Trends in Taxonomic and Functional Composition of Soil Microbiome Along a Precipitation Gradient in Israel. MICROBIAL ECOLOGY 2017;74:168-176. [PMID: 28074247 DOI: 10.1007/s00248-017-0931-0] [Citation(s) in RCA: 22] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/11/2016] [Accepted: 01/02/2017] [Indexed: 06/06/2023]
36
A manganese catalase from Thermomicrobium roseum with peroxidase and catecholase activity. Extremophiles 2016;21:201-210. [DOI: 10.1007/s00792-016-0896-9] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/29/2016] [Accepted: 11/18/2016] [Indexed: 01/12/2023]
37
Thiel V, Wood JM, Olsen MT, Tank M, Klatt CG, Ward DM, Bryant DA. The Dark Side of the Mushroom Spring Microbial Mat: Life in the Shadow of Chlorophototrophs. I. Microbial Diversity Based on 16S rRNA Gene Amplicons and Metagenomic Sequencing. Front Microbiol 2016;7:919. [PMID: 27379049 PMCID: PMC4911352 DOI: 10.3389/fmicb.2016.00919] [Citation(s) in RCA: 79] [Impact Index Per Article: 8.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/07/2016] [Accepted: 05/27/2016] [Indexed: 11/13/2022]  Open
38
Chen F, Yang Y, Ma Y, Hou H, Zhang S, Ma J. Effects of CO2 leakage on soil bacterial communities from simulated CO2-EOR areas. ENVIRONMENTAL SCIENCE. PROCESSES & IMPACTS 2016;18:547-554. [PMID: 27056285 DOI: 10.1039/c5em00571j] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/05/2023]
39
Gagliano AL, Tagliavia M, D'Alessandro W, Franzetti A, Parello F, Quatrini P. So close, so different: geothermal flux shapes divergent soil microbial communities at neighbouring sites. GEOBIOLOGY 2016;14:150-162. [PMID: 26560641 DOI: 10.1111/gbi.12167] [Citation(s) in RCA: 27] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/22/2015] [Accepted: 10/01/2015] [Indexed: 06/05/2023]
40
Enhancement of soluble expression of codon-optimized Thermomicrobium roseum sarcosine oxidase in Escherichia coli via chaperone co-expression. J Biotechnol 2015;218:75-84. [PMID: 26626227 DOI: 10.1016/j.jbiotec.2015.11.018] [Citation(s) in RCA: 21] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/09/2015] [Revised: 11/18/2015] [Accepted: 11/23/2015] [Indexed: 12/30/2022]
41
Houghton KM, Morgan XC, Lagutin K, MacKenzie AD, Vyssotskii M, Mitchell KA, McDonald IR, Morgan HW, Power JF, Moreau JW, Hanssen E, Stott MB. Thermorudis pharmacophila sp. nov., a novel member of the class Thermomicrobia isolated from geothermal soil, and emended descriptions of Thermomicrobium roseum, Thermomicrobium carboxidum, Thermorudis peleae and Sphaerobacter thermophilus. Int J Syst Evol Microbiol 2015;65:4479-4487. [PMID: 26374291 DOI: 10.1099/ijsem.0.000598] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]  Open
42
Coutinho FH, Meirelles PM, Moreira APB, Paranhos RP, Dutilh BE, Thompson FL. Niche distribution and influence of environmental parameters in marine microbial communities: a systematic review. PeerJ 2015;3:e1008. [PMID: 26157601 PMCID: PMC4476133 DOI: 10.7717/peerj.1008] [Citation(s) in RCA: 24] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/06/2014] [Accepted: 05/19/2015] [Indexed: 12/14/2022]  Open
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Dick JM. Average oxidation state of carbon in proteins. J R Soc Interface 2015;11:20131095. [PMID: 25165594 DOI: 10.1098/rsif.2013.1095] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/11/2023]  Open
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Urbieta MS, Donati ER, Chan KG, Shahar S, Sin LL, Goh KM. Thermophiles in the genomic era: Biodiversity, science, and applications. Biotechnol Adv 2015;33:633-47. [PMID: 25911946 DOI: 10.1016/j.biotechadv.2015.04.007] [Citation(s) in RCA: 85] [Impact Index Per Article: 8.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/17/2014] [Revised: 12/18/2014] [Accepted: 04/14/2015] [Indexed: 01/30/2023]
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Tebo BM, Davis RE, Anitori RP, Connell LB, Schiffman P, Staudigel H. Microbial communities in dark oligotrophic volcanic ice cave ecosystems of Mt. Erebus, Antarctica. Front Microbiol 2015;6:179. [PMID: 25814983 PMCID: PMC4356161 DOI: 10.3389/fmicb.2015.00179] [Citation(s) in RCA: 59] [Impact Index Per Article: 5.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/09/2014] [Accepted: 02/19/2015] [Indexed: 01/15/2023]  Open
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Genome Sequence of a Sulfate-Reducing Thermophilic Bacterium, Thermodesulfobacterium commune DSM 2178T (Phylum Thermodesulfobacteria). GENOME ANNOUNCEMENTS 2015;3:3/1/e01490-14. [PMID: 25635017 PMCID: PMC4319511 DOI: 10.1128/genomea.01490-14] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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Barton HA, Giarrizzo JG, Suarez P, Robertson CE, Broering MJ, Banks ED, Vaishampayan PA, Venkateswaran K. Microbial diversity in a Venezuelan orthoquartzite cave is dominated by the Chloroflexi (Class Ktedonobacterales) and Thaumarchaeota Group I.1c. Front Microbiol 2014;5:615. [PMID: 25505450 PMCID: PMC4244709 DOI: 10.3389/fmicb.2014.00615] [Citation(s) in RCA: 53] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/01/2014] [Accepted: 10/28/2014] [Indexed: 01/10/2023]  Open
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King CE, King GM. Thermomicrobium carboxidum sp. nov., and Thermorudis peleae gen. nov., sp. nov., carbon monoxide-oxidizing bacteria isolated from geothermally heated biofilms. Int J Syst Evol Microbiol 2014;64:2586-2592. [PMID: 24814334 DOI: 10.1099/ijs.0.060327-0] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]  Open
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Genomic analysis of Chthonomonas calidirosea, the first sequenced isolate of the phylum Armatimonadetes. ISME JOURNAL 2014;8:1522-33. [PMID: 24477196 DOI: 10.1038/ismej.2013.251] [Citation(s) in RCA: 29] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/05/2013] [Revised: 12/08/2013] [Accepted: 12/11/2013] [Indexed: 02/08/2023]
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The quest for a unified view of bacterial land colonization. ISME JOURNAL 2014;8:1358-69. [PMID: 24451209 PMCID: PMC4069389 DOI: 10.1038/ismej.2013.247] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 06/24/2013] [Revised: 11/15/2013] [Accepted: 12/12/2013] [Indexed: 12/13/2022]
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