1
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Liebe S, Niediek J, Pals M, Reber TP, Faber J, Boström J, Elger CE, Macke JH, Mormann F. Phase of firing does not reflect temporal order in sequence memory of humans and recurrent neural networks. Nat Neurosci 2025; 28:873-882. [PMID: 40128390 PMCID: PMC11976290 DOI: 10.1038/s41593-025-01893-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/24/2023] [Accepted: 01/15/2025] [Indexed: 03/26/2025]
Abstract
The temporal order of a sequence of events has been thought to be reflected in the ordered firing of neurons at different phases of theta oscillations. Here we assess this by measuring single neuron activity (1,420 neurons) and local field potentials (921 channels) in the medial temporal lobe of 16 patients with epilepsy performing a working-memory task for temporal order. During memory maintenance, we observe theta oscillations, preferential firing of single neurons to theta phase and a close relationship between phase of firing and item position. However, the firing order did not match item order. Training recurrent neural networks to perform an analogous task, we also show the generation of theta oscillations, theta phase-dependent firing related to item position and, again, no match between firing and item order. Rather, our results suggest a mechanistic link between phase order, stimulus timing and oscillation frequency. In both biological and artificial neural networks, we provide evidence supporting the role of phase of firing in working-memory processing.
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Grants
- This work was supported by the German Research Foundation (DFG): SPP 2241 (PN 520287829), Germany’s Excellence Strategy (EXC-Number 2064/1)
- German Research Foundation (DFG): SFB 1089 (PN 227953431), Germany’s Excellence Strategy (EXC-Number 2064/1, PN 390727645); and the German Federal Ministry of Education and Research (BMBF) through the Tübingen AI Center, FKZ: 01IS18039 and DeepHumanVision, FKZ: 031L0197B-C.
- This work was supported by the German Research Foundation (DFG): MO 930/4-2 (PN 212842712), MO 930/15/1 (PN 545587701), SFB 1089 (PN 227953431), Germany’s Excellence Strategy (EXC-Number 2064/1, PN 390727645); and the German Federal Ministry of Education and Research (BMBF) through the Tübingen AI Center, FKZ: 01IS18039 and DeepHumanVision, FKZ: 031L0197B-C.
- This work was supported by the German Research Foundation (DFG) SFB 1089, SFB 1233 (PN 276693517), SPP 2205, the Volkswagen Foundation: 86 507; the NRW network program iBehave;
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Affiliation(s)
- Stefanie Liebe
- Department of Epileptology, University of Bonn Medical Center, Bonn, Germany.
- University Hospital Tübingen, Department of Neurology and Epileptology, Tübingen, Germany.
| | - Johannes Niediek
- Department of Epileptology, University of Bonn Medical Center, Bonn, Germany
- Machine Learning Group, Technische Universität Berlin, Berlin, Germany
| | - Matthijs Pals
- Machine Learning in Science, Excellence Cluster Machine Learning, Tübingen University, Tübingen, Germany
- Tübingen AI Center, Tübingen, Germany
| | - Thomas P Reber
- Department of Epileptology, University of Bonn Medical Center, Bonn, Germany
- Faculty of Psychology, UniDistance Suisse, Brig, Switzerland
| | - Jennifer Faber
- Department of Epileptology, University of Bonn Medical Center, Bonn, Germany
- Department of Neurology, University of Bonn Medical Center, Bonn, Germany
| | - Jan Boström
- Department of Neurosurgery, University of Bonn Medical Center, Bonn, Germany
| | - Christian E Elger
- Department of Epileptology, University of Bonn Medical Center, Bonn, Germany
| | - Jakob H Macke
- Machine Learning in Science, Excellence Cluster Machine Learning, Tübingen University, Tübingen, Germany
- Tübingen AI Center, Tübingen, Germany
- Max Planck Institute for Intelligent Systems, Tübingen, Germany
| | - Florian Mormann
- Department of Epileptology, University of Bonn Medical Center, Bonn, Germany.
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2
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Kutter EF, Dehnen G, Borger V, Surges R, Nieder A, Mormann F. Single-neuron representation of nonsymbolic and symbolic number zero in the human medial temporal lobe. Curr Biol 2024; 34:4794-4802.e3. [PMID: 39321795 DOI: 10.1016/j.cub.2024.08.041] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/19/2024] [Revised: 08/06/2024] [Accepted: 08/22/2024] [Indexed: 09/27/2024]
Abstract
The number zero holds a special status among numbers, indispensable for developing a comprehensive number theory.1,2,3,4 Despite its importance in mathematics, the neuronal foundation of zero in the human brain is unknown. We conducted single-neuron recordings in neurosurgical patients5,6,7 while they made judgments involving nonsymbolic number representations (dot numerosity), including the empty set, and symbolic numbers (Arabic numerals), including numeral zero. Neurons showed responsiveness to either the empty set or numeral zero, but not both. Neuronal activity to zero in both nonsymbolic and symbolic formats exhibited a numerical distance effect, indicating that zero representations are integrated together with countable numerosities and positive integers at the low end of the number line.8,9 A boundary in neuronal coding existed between the nonsymbolic empty set and small numerosities, correlating with the relative difficulty in discriminating numerosity zero behaviorally. Conversely, no such boundary was found for symbolic zero activity, suggesting that symbolic representations integrate zero with other numerals along the number line, reconciling its outlier role. The status of zero as a special nonsymbolic numerical quantity is reflected in the activity of neurons in the human brain, which seems to serve as a scaffold for more advanced representations of zero as a symbolic number.
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Affiliation(s)
- Esther F Kutter
- Department of Epileptology, University of Bonn Medical Center, Venusberg-Campus 1, 53127 Bonn, Germany; Animal Physiology, Institute of Neurobiology, University of Tübingen, 72076 Tübingen, Germany
| | - Gert Dehnen
- Department of Epileptology, University of Bonn Medical Center, Venusberg-Campus 1, 53127 Bonn, Germany
| | - Valeri Borger
- Department of Neurosurgery, University of Bonn Medical Center, Venusberg-Campus 1, 53127 Bonn, Germany
| | - Rainer Surges
- Department of Epileptology, University of Bonn Medical Center, Venusberg-Campus 1, 53127 Bonn, Germany
| | - Andreas Nieder
- Animal Physiology, Institute of Neurobiology, University of Tübingen, 72076 Tübingen, Germany.
| | - Florian Mormann
- Department of Epileptology, University of Bonn Medical Center, Venusberg-Campus 1, 53127 Bonn, Germany.
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3
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Lamsam L, Gu B, Liang M, Sun G, Khan KJ, Sheth KN, Hirsch LJ, Pittenger C, Kaye AP, Krystal JH, Damisah EC. The human claustrum tracks slow waves during sleep. Nat Commun 2024; 15:8964. [PMID: 39419999 PMCID: PMC11487173 DOI: 10.1038/s41467-024-53477-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/19/2024] [Accepted: 10/11/2024] [Indexed: 10/19/2024] Open
Abstract
Slow waves are a distinguishing feature of non-rapid-eye-movement (NREM) sleep, an evolutionarily conserved process critical for brain function. Non-human studies suggest that the claustrum, a small subcortical nucleus, coordinates slow waves. We show that, in contrast to neurons from other brain regions, claustrum neurons in the human brain increase their spiking activity and track slow waves during NREM sleep, suggesting that the claustrum plays a role in coordinating human sleep architecture.
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Affiliation(s)
- Layton Lamsam
- Department of Neurosurgery, Yale School of Medicine, Yale University, New Haven, CT, USA
| | - Brett Gu
- Department of Neurosurgery, Yale School of Medicine, Yale University, New Haven, CT, USA
| | - Mingli Liang
- Department of Neurosurgery, Yale School of Medicine, Yale University, New Haven, CT, USA
| | - George Sun
- Department of Neurosurgery, Yale School of Medicine, Yale University, New Haven, CT, USA
| | - Kamren J Khan
- Department of Neurosurgery, Yale School of Medicine, Yale University, New Haven, CT, USA
| | - Kevin N Sheth
- Department of Neurosurgery, Yale School of Medicine, Yale University, New Haven, CT, USA
- Department of Neurology, Yale School of Medicine, Yale University, New Haven, CT, USA
| | - Lawrence J Hirsch
- Department of Neurology, Yale School of Medicine, Yale University, New Haven, CT, USA
- Department of Neurology, Yale School of Medicine, Comprehensive Epilepsy Center, Yale University, New Haven, CT, USA
| | - Christopher Pittenger
- Department of Psychiatry, Yale School of Medicine, Yale University, New Haven, CT, USA
- Wu Tsai Institute, Yale University, New Haven, CT, USA
- Department of Psychology, Yale University, New Haven, CT, USA
- Child Study Center, Yale School of Medicine, Yale University, New Haven, CT, USA
- Center for Brain and Mind Health, Yale University, New Haven, CT, USA
| | - Alfred P Kaye
- Department of Psychiatry, Yale School of Medicine, Yale University, New Haven, CT, USA
- Wu Tsai Institute, Yale University, New Haven, CT, USA
- Clinical Neurosciences Division, VA National Center for PTSD, West Haven, CT, USA
| | - John H Krystal
- Department of Psychiatry, Yale School of Medicine, Yale University, New Haven, CT, USA
- Wu Tsai Institute, Yale University, New Haven, CT, USA
- Department of Psychology, Yale University, New Haven, CT, USA
- Clinical Neurosciences Division, VA National Center for PTSD, West Haven, CT, USA
- Department of Neuroscience, Yale School of Medicine, Yale University, New Haven, CT, USA
| | - Eyiyemisi C Damisah
- Department of Neurosurgery, Yale School of Medicine, Yale University, New Haven, CT, USA.
- Wu Tsai Institute, Yale University, New Haven, CT, USA.
- Center for Brain and Mind Health, Yale University, New Haven, CT, USA.
- Department of Neuroscience, Yale School of Medicine, Yale University, New Haven, CT, USA.
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4
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Kehl MS, Mackay S, Ohla K, Schneider M, Borger V, Surges R, Spehr M, Mormann F. Single-neuron representations of odours in the human brain. Nature 2024; 634:626-634. [PMID: 39385026 PMCID: PMC11485236 DOI: 10.1038/s41586-024-08016-5] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/27/2023] [Accepted: 09/04/2024] [Indexed: 10/11/2024]
Abstract
Olfaction is a fundamental sensory modality that guides animal and human behaviour1,2. However, the underlying neural processes of human olfaction are still poorly understood at the fundamental-that is, the single-neuron-level. Here we report recordings of single-neuron activity in the piriform cortex and medial temporal lobe in awake humans performing an odour rating and identification task. We identified odour-modulated neurons within the piriform cortex, amygdala, entorhinal cortex and hippocampus. In each of these regions, neuronal firing accurately encodes odour identity. Notably, repeated odour presentations reduce response firing rates, demonstrating central repetition suppression and habituation. Different medial temporal lobe regions have distinct roles in odour processing, with amygdala neurons encoding subjective odour valence, and hippocampal neurons predicting behavioural odour identification performance. Whereas piriform neurons preferably encode chemical odour identity, hippocampal activity reflects subjective odour perception. Critically, we identify that piriform cortex neurons reliably encode odour-related images, supporting a multimodal role of the human piriform cortex. We also observe marked cross-modal coding of both odours and images, especially in the amygdala and piriform cortex. Moreover, we identify neurons that respond to semantically coherent odour and image information, demonstrating conceptual coding schemes in olfaction. Our results bridge the long-standing gap between animal models and non-invasive human studies and advance our understanding of odour processing in the human brain by identifying neuronal odour-coding principles, regional functional differences and cross-modal integration.
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Affiliation(s)
- Marcel S Kehl
- Department of Epileptology, University Hospital Bonn, Bonn, Germany
- Department of Experimental Psychology, University of Oxford, Oxford, UK
| | - Sina Mackay
- Department of Epileptology, University Hospital Bonn, Bonn, Germany
| | - Kathrin Ohla
- Science & Research, dsm-firmenich, Satigny, Switzerland
| | | | - Valeri Borger
- Department of Neurosurgery, University Hospital Bonn, Bonn, Germany
| | - Rainer Surges
- Department of Epileptology, University Hospital Bonn, Bonn, Germany
| | - Marc Spehr
- Department of Chemosensation, Institute for Biology II, RWTH Aachen University, Aachen, Germany.
| | - Florian Mormann
- Department of Epileptology, University Hospital Bonn, Bonn, Germany.
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5
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Mackay S, Reber TP, Bausch M, Boström J, Elger CE, Mormann F. Concept and location neurons in the human brain provide the 'what' and 'where' in memory formation. Nat Commun 2024; 15:7926. [PMID: 39256373 PMCID: PMC11387663 DOI: 10.1038/s41467-024-52295-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/08/2021] [Accepted: 08/29/2024] [Indexed: 09/12/2024] Open
Abstract
Our brains create new memories by capturing the 'who/what', 'where' and 'when' of everyday experiences. On a neuronal level, mechanisms facilitating a successful transfer into episodic memory are still unclear. We investigated this by measuring single neuron activity in the human medial temporal lobe during encoding of item-location associations. While previous research has found predictive effects in population activity in human MTL structures, we could attribute such effects to two specialized sub-groups of neurons: concept cells in the hippocampus, amygdala and entorhinal cortex (EC), and a second group of parahippocampal location-selective neurons. In both item- and location-selective populations, firing rates were significantly higher during successfully encoded trials. These findings are in line with theories of hippocampal indexing, since selective index neurons may act as pointers to neocortical representations. Overall, activation of distinct populations of neurons could directly support the connection of the 'what' and 'where' of episodic memory.
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Affiliation(s)
- Sina Mackay
- Department of Epileptology, University Hospital Bonn, Bonn, Germany
| | - Thomas P Reber
- Department of Epileptology, University Hospital Bonn, Bonn, Germany
- Faculty of Psychology, UniDistance Suisse, Brig, Switzerland
| | - Marcel Bausch
- Department of Epileptology, University Hospital Bonn, Bonn, Germany
| | - Jan Boström
- Department of Neurosurgery, University Hospital Bonn, Bonn, Germany
| | | | - Florian Mormann
- Department of Epileptology, University Hospital Bonn, Bonn, Germany.
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6
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Fetterhoff D, Costa M, Hellerstedt R, Johannessen R, Imbach L, Sarnthein J, Strange BA. Neuronal population representation of human emotional memory. Cell Rep 2024; 43:114071. [PMID: 38592973 PMCID: PMC11063625 DOI: 10.1016/j.celrep.2024.114071] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/13/2023] [Revised: 03/07/2024] [Accepted: 03/21/2024] [Indexed: 04/11/2024] Open
Abstract
Understanding how emotional processing modulates learning and memory is crucial for the treatment of neuropsychiatric disorders characterized by emotional memory dysfunction. We investigate how human medial temporal lobe (MTL) neurons support emotional memory by recording spiking activity from the hippocampus, amygdala, and entorhinal cortex during encoding and recognition sessions of an emotional memory task in patients with pharmaco-resistant epilepsy. Our findings reveal distinct representations for both remembered compared to forgotten and emotional compared to neutral scenes in single units and MTL population spiking activity. Additionally, we demonstrate that a distributed network of human MTL neurons exhibiting mixed selectivity on a single-unit level collectively processes emotion and memory as a network, with a small percentage of neurons responding conjointly to emotion and memory. Analyzing spiking activity enables a detailed understanding of the neurophysiological mechanisms underlying emotional memory and could provide insights into how emotion alters memory during healthy and maladaptive learning.
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Affiliation(s)
- Dustin Fetterhoff
- Laboratory for Clinical Neuroscience, Center for Biomedical Technology, Universidad Politécnica de Madrid, IdISSC, Madrid, Spain.
| | - Manuela Costa
- Laboratory for Clinical Neuroscience, Center for Biomedical Technology, Universidad Politécnica de Madrid, IdISSC, Madrid, Spain
| | - Robin Hellerstedt
- Laboratory for Clinical Neuroscience, Center for Biomedical Technology, Universidad Politécnica de Madrid, IdISSC, Madrid, Spain
| | - Rebecca Johannessen
- Swiss Epilepsy Center, Klinik Lengg, Zurich, Switzerland; Department of Psychology, University of Zurich, Switzerland
| | - Lukas Imbach
- Swiss Epilepsy Center, Klinik Lengg, Zurich, Switzerland; Neuroscience Center Zurich, University of Zurich and ETH Zurich, Zurich, Switzerland
| | - Johannes Sarnthein
- Neuroscience Center Zurich, University of Zurich and ETH Zurich, Zurich, Switzerland; Department of Neurosurgery, University Hospital Zurich, University of Zurich, Zurich, Switzerland
| | - Bryan A Strange
- Laboratory for Clinical Neuroscience, Center for Biomedical Technology, Universidad Politécnica de Madrid, IdISSC, Madrid, Spain; Reina Sofia Centre for Alzheimer's Research, Madrid, Spain
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7
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Blanpain LT, Cole ER, Chen E, Park JK, Walelign MY, Gross RE, Cabaniss BT, Willie JT, Singer AC. Multisensory flicker modulates widespread brain networks and reduces interictal epileptiform discharges. Nat Commun 2024; 15:3156. [PMID: 38605017 PMCID: PMC11009358 DOI: 10.1038/s41467-024-47263-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/25/2023] [Accepted: 03/26/2024] [Indexed: 04/13/2024] Open
Abstract
Modulating brain oscillations has strong therapeutic potential. Interventions that both non-invasively modulate deep brain structures and are practical for chronic daily home use are desirable for a variety of therapeutic applications. Repetitive audio-visual stimulation, or sensory flicker, is an accessible approach that modulates hippocampus in mice, but its effects in humans are poorly defined. We therefore quantified the neurophysiological effects of flicker with high spatiotemporal resolution in patients with focal epilepsy who underwent intracranial seizure monitoring. In this interventional trial (NCT04188834) with a cross-over design, subjects underwent different frequencies of flicker stimulation in the same recording session with the effect of sensory flicker exposure on local field potential (LFP) power and interictal epileptiform discharges (IEDs) as primary and secondary outcomes, respectively. Flicker focally modulated local field potentials in expected canonical sensory cortices but also in the medial temporal lobe and prefrontal cortex, likely via resonance of stimulated long-range circuits. Moreover, flicker decreased interictal epileptiform discharges, a pathological biomarker of epilepsy and degenerative diseases, most strongly in regions where potentials were flicker-modulated, especially the visual cortex and medial temporal lobe. This trial met the scientific goal and is now closed. Our findings reveal how multi-sensory stimulation may modulate cortical structures to mitigate pathological activity in humans.
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Affiliation(s)
- Lou T Blanpain
- Department of Neurosurgery, Emory University School of Medicine, Atlanta, GA, USA
- Neuroscience Graduate Program, Graduate Division of Biological and Biomedical Sciences, Emory University, Atlanta, GA, USA
- Coulter Department of Biomedical Engineering, Georgia Institute of Technology & Emory University, Atlanta, GA, USA
| | - Eric R Cole
- Department of Neurosurgery, Emory University School of Medicine, Atlanta, GA, USA
- Coulter Department of Biomedical Engineering, Georgia Institute of Technology & Emory University, Atlanta, GA, USA
| | - Emily Chen
- Department of Neurosurgery, Emory University School of Medicine, Atlanta, GA, USA
| | - James K Park
- Department of Neurosurgery, Emory University School of Medicine, Atlanta, GA, USA
| | - Michael Y Walelign
- Department of Electrical and Computer Engineering, Georgia Institute of Technology, Atlanta, GA, USA
| | - Robert E Gross
- Department of Neurosurgery, Emory University School of Medicine, Atlanta, GA, USA
- Departments of Neurosurgery and Neuroscience and Cell Biology, Rutgers Robert Wood Johnson Medical School, New Brunswick and New Jersey Medical School, Newark, NJ, USA
| | - Brian T Cabaniss
- Department of Neurology, Emory University School of Medicine, Atlanta, GA, USA
| | - Jon T Willie
- Departments of Neurological Surgery, Neurology, Psychiatry, and Biomedical Engineering, Washington University, St. Louis, MO, USA.
| | - Annabelle C Singer
- Neuroscience Graduate Program, Graduate Division of Biological and Biomedical Sciences, Emory University, Atlanta, GA, USA.
- Coulter Department of Biomedical Engineering, Georgia Institute of Technology & Emory University, Atlanta, GA, USA.
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8
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Steinmetz PN. Simulation of background neuronal activity and noise in human intracranial microwire recordings. J Neurosci Methods 2024; 402:110017. [PMID: 38036184 DOI: 10.1016/j.jneumeth.2023.110017] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/22/2023] [Revised: 10/30/2023] [Accepted: 11/18/2023] [Indexed: 12/02/2023]
Abstract
BACKGROUND Human intracranial microwire recordings allow measurement of neuronal activity in human subjects at a fine temporal and spatial scale. The recorded extracellular potentials represent a mixture of action potentials from nearby neurons, local field potentials, and other noise sources. Signal processing of these recordings is used to separate the activity of putative single neurons from other background and noise. To better understand the separation of single neuron activity, one approach is to simulate the signals produced by neurons firing action potentials combined with background activity and noise. NEW METHOD This paper characterizes the background activity and noise in human intracranial microwire recordings and presents an accurate and efficient method of simulation using an infinite impulse response filter to color white noise. RESULTS AND COMPARISON This method reproduces the power spectral density of the background activity and noise over a frequency range of 1-5000 Hz and is over 200 times faster than previously used methods. It thus facilitates large scale studies of variation of noise sources, field potentials, and processing parameters. It performs equivalently in terms of spike sorting to simulation using white noise. Another advantage is that the simulated signals are known to arise from a pseudorandom number generator and cannot be the result of detecting simulated background spiking activity. CONCLUSIONS This approach provides a rapid and accurate method of simulating background noise and neural activity in human intracranial microwire recordings. It is suitable for use in large scale simulations to study spike sorting in this type of recording.
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9
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Lamsam L, Liang M, Gu B, Sun G, Hirsch LJ, Pittenger C, Kaye AP, Krystal JH, Damisah EC. The human claustrum tracks slow waves during sleep. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2024:2024.01.29.577851. [PMID: 38352615 PMCID: PMC10862750 DOI: 10.1101/2024.01.29.577851] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/23/2024]
Abstract
Slow waves are a distinguishing feature of non-rapid-eye-movement (NREM) sleep, an evolutionarily conserved process critical for brain function. Non-human studies posit that the claustrum, a small subcortical nucleus, coordinates slow waves. We recorded claustrum neurons in humans during sleep. In contrast to neurons from other brain regions, claustrum neurons increased their activity and tracked slow waves during NREM sleep suggesting that the claustrum plays a role in human sleep architecture.
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10
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Kutter EF, Dehnen G, Borger V, Surges R, Mormann F, Nieder A. Distinct neuronal representation of small and large numbers in the human medial temporal lobe. Nat Hum Behav 2023; 7:1998-2007. [PMID: 37783890 DOI: 10.1038/s41562-023-01709-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/12/2023] [Accepted: 08/31/2023] [Indexed: 10/04/2023]
Abstract
Whether small numerical quantities are represented by a special subitizing system that is distinct from a large-number estimation system has been debated for over a century. Here we show that two separate neural mechanisms underlie the representation of small and large numbers. We performed single neuron recordings in the medial temporal lobe of neurosurgical patients judging numbers. We found a boundary in neuronal coding around number 4 that correlates with the behavioural transition from subitizing to estimation. In the subitizing range, neurons showed superior tuning selectivity accompanied by suppression effects suggestive of surround inhibition as a selectivity-increasing mechanism. In contrast, tuning selectivity decreased with increasing numbers beyond 4, characterizing a ratio-dependent number estimation system. The two systems with the coding boundary separating them were also indicated using decoding and clustering analyses. The identified small-number subitizing system could be linked to attention and working memory that show comparable capacity limitations.
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Affiliation(s)
- Esther F Kutter
- Department of Epileptology, University of Bonn Medical Center, Bonn, Germany
- Animal Physiology, Institute of Neurobiology, University of Tübingen, Tübingen, Germany
| | - Gert Dehnen
- Department of Epileptology, University of Bonn Medical Center, Bonn, Germany
| | - Valeri Borger
- Department of Neurosurgery, University of Bonn Medical Center, Bonn, Germany
| | - Rainer Surges
- Department of Epileptology, University of Bonn Medical Center, Bonn, Germany
| | - Florian Mormann
- Department of Epileptology, University of Bonn Medical Center, Bonn, Germany.
| | - Andreas Nieder
- Animal Physiology, Institute of Neurobiology, University of Tübingen, Tübingen, Germany.
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11
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Kolibius LD, Roux F, Parish G, Ter Wal M, Van Der Plas M, Chelvarajah R, Sawlani V, Rollings DT, Lang JD, Gollwitzer S, Walther K, Hopfengärtner R, Kreiselmeyer G, Hamer H, Staresina BP, Wimber M, Bowman H, Hanslmayr S. Hippocampal neurons code individual episodic memories in humans. Nat Hum Behav 2023; 7:1968-1979. [PMID: 37798368 PMCID: PMC10663153 DOI: 10.1038/s41562-023-01706-6] [Citation(s) in RCA: 17] [Impact Index Per Article: 8.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/01/2022] [Accepted: 08/23/2023] [Indexed: 10/07/2023]
Abstract
The hippocampus is an essential hub for episodic memory processing. However, how human hippocampal single neurons code multi-element associations remains unknown. In particular, it is debated whether each hippocampal neuron represents an invariant element within an episode or whether single neurons bind together all the elements of a discrete episodic memory. Here we provide evidence for the latter hypothesis. Using single-neuron recordings from a total of 30 participants, we show that individual neurons, which we term episode-specific neurons, code discrete episodic memories using either a rate code or a temporal firing code. These neurons were observed exclusively in the hippocampus. Importantly, these episode-specific neurons do not reflect the coding of a particular element in the episode (that is, concept or time). Instead, they code for the conjunction of the different elements that make up the episode.
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Affiliation(s)
- Luca D Kolibius
- Department of Biomedical Engineering, Columbia University, New York, NY, USA.
- Centre for Cognitive Neuroimaging, School of Psychology and Neuroscience, University of Glasgow, Glasgow, UK.
- Centre for Human Brain Health, School of Psychology, University of Birmingham, Birmingham, UK.
| | - Frederic Roux
- Centre for Human Brain Health, School of Psychology, University of Birmingham, Birmingham, UK
| | - George Parish
- Centre for Human Brain Health, School of Psychology, University of Birmingham, Birmingham, UK
| | - Marije Ter Wal
- Centre for Human Brain Health, School of Psychology, University of Birmingham, Birmingham, UK
| | - Mircea Van Der Plas
- Centre for Cognitive Neuroimaging, School of Psychology and Neuroscience, University of Glasgow, Glasgow, UK
- Centre for Human Brain Health, School of Psychology, University of Birmingham, Birmingham, UK
| | - Ramesh Chelvarajah
- Centre for Human Brain Health, School of Psychology, University of Birmingham, Birmingham, UK
- Complex Epilepsy and Surgery Service, Neurosciences Centre, Queen Elizabeth Hospital Birmingham, Birmingham, UK
| | - Vijay Sawlani
- Complex Epilepsy and Surgery Service, Neurosciences Centre, Queen Elizabeth Hospital Birmingham, Birmingham, UK
| | - David T Rollings
- Complex Epilepsy and Surgery Service, Neurosciences Centre, Queen Elizabeth Hospital Birmingham, Birmingham, UK
| | - Johannes D Lang
- Epilepsy Center, Department of Neurology, University Hospital Erlangen, Friedrich-Alexander-Universität Erlangen-Nürnberg, Erlangen, Germany
| | - Stephanie Gollwitzer
- Epilepsy Center, Department of Neurology, University Hospital Erlangen, Friedrich-Alexander-Universität Erlangen-Nürnberg, Erlangen, Germany
| | - Katrin Walther
- Epilepsy Center, Department of Neurology, University Hospital Erlangen, Friedrich-Alexander-Universität Erlangen-Nürnberg, Erlangen, Germany
| | - Rüdiger Hopfengärtner
- Epilepsy Center, Department of Neurology, University Hospital Erlangen, Friedrich-Alexander-Universität Erlangen-Nürnberg, Erlangen, Germany
| | - Gernot Kreiselmeyer
- Epilepsy Center, Department of Neurology, University Hospital Erlangen, Friedrich-Alexander-Universität Erlangen-Nürnberg, Erlangen, Germany
| | - Hajo Hamer
- Epilepsy Center, Department of Neurology, University Hospital Erlangen, Friedrich-Alexander-Universität Erlangen-Nürnberg, Erlangen, Germany
| | - Bernhard P Staresina
- Department of Experimental Psychology, University of Oxford, Oxford, UK
- Oxford Centre for Human Brain Activity, Wellcome Centre for Integrative Neuroimaging, Department of Psychiatry, University of Oxford, Oxford, UK
| | - Maria Wimber
- Centre for Cognitive Neuroimaging, School of Psychology and Neuroscience, University of Glasgow, Glasgow, UK
- Centre for Human Brain Health, School of Psychology, University of Birmingham, Birmingham, UK
| | - Howard Bowman
- Centre for Human Brain Health, School of Psychology, University of Birmingham, Birmingham, UK
- Centre for Cognitive Neuroscience and Cognitive Systems and the School of Computing, University of Kent, Canterbury, UK
| | - Simon Hanslmayr
- Centre for Cognitive Neuroimaging, School of Psychology and Neuroscience, University of Glasgow, Glasgow, UK.
- Centre for Human Brain Health, School of Psychology, University of Birmingham, Birmingham, UK.
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12
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Staresina BP, Niediek J, Borger V, Surges R, Mormann F. How coupled slow oscillations, spindles and ripples coordinate neuronal processing and communication during human sleep. Nat Neurosci 2023; 26:1429-1437. [PMID: 37429914 PMCID: PMC10400429 DOI: 10.1038/s41593-023-01381-w] [Citation(s) in RCA: 37] [Impact Index Per Article: 18.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/11/2023] [Accepted: 06/13/2023] [Indexed: 07/12/2023]
Abstract
Learning and plasticity rely on fine-tuned regulation of neuronal circuits during offline periods. An unresolved puzzle is how the sleeping brain, in the absence of external stimulation or conscious effort, coordinates neuronal firing rates (FRs) and communication within and across circuits to support synaptic and systems consolidation. Using intracranial electroencephalography combined with multiunit activity recordings from the human hippocampus and surrounding medial temporal lobe (MTL) areas, we show that, governed by slow oscillation (SO) up-states, sleep spindles set a timeframe for ripples to occur. This sequential coupling leads to a stepwise increase in (1) neuronal FRs, (2) short-latency cross-correlations among local neuronal assemblies and (3) cross-regional MTL interactions. Triggered by SOs and spindles, ripples thus establish optimal conditions for spike-timing-dependent plasticity and systems consolidation. These results unveil how the sequential coupling of specific sleep rhythms orchestrates neuronal processing and communication during human sleep.
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Affiliation(s)
- Bernhard P Staresina
- Department of Experimental Psychology, University of Oxford, Oxford, UK.
- Oxford Centre for Human Brain Activity, Wellcome Centre for Integrative Neuroimaging, Department of Psychiatry, University of Oxford, Oxford, UK.
| | - Johannes Niediek
- Department of Epileptology, University of Bonn Medical Center, Bonn, Germany
- Edmond and Lily Safra Center for Brain Sciences, The Hebrew University of Jerusalem, Jerusalem, Israel
| | - Valeri Borger
- Department of Neurosurgery, University of Bonn Medical Center, Bonn, Germany
| | - Rainer Surges
- Department of Epileptology, University of Bonn Medical Center, Bonn, Germany
| | - Florian Mormann
- Department of Epileptology, University of Bonn Medical Center, Bonn, Germany
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13
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Reber TP, Mackay S, Bausch M, Kehl MS, Borger V, Surges R, Mormann F. Single-neuron mechanisms of neural adaptation in the human temporal lobe. Nat Commun 2023; 14:2496. [PMID: 37120437 PMCID: PMC10148801 DOI: 10.1038/s41467-023-38190-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/16/2021] [Accepted: 04/13/2023] [Indexed: 05/01/2023] Open
Abstract
A central function of the human brain is to adapt to new situations based on past experience. Adaptation is reflected behaviorally by shorter reaction times to repeating or similar stimuli, and neurophysiologically by reduced neural activity in bulk-tissue measurements with fMRI or EEG. Several potential single-neuron mechanisms have been hypothesized to cause this reduction of activity at the macroscopic level. We here explore these mechanisms using an adaptation paradigm with visual stimuli bearing abstract semantic similarity. We recorded intracranial EEG (iEEG) simultaneously with spiking activity of single neurons in the medial temporal lobes of 25 neurosurgical patients. Recording from 4917 single neurons, we demonstrate that reduced event-related potentials in the macroscopic iEEG signal are associated with a sharpening of single-neuron tuning curves in the amygdala, but with an overall reduction of single-neuron activity in the hippocampus, entorhinal cortex, and parahippocampal cortex, consistent with fatiguing in these areas.
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Affiliation(s)
- Thomas P Reber
- Faculty of Psychology, UniDistance Suisse, Brig, Switzerland.
- Department of Epileptology, University of Bonn Medical Centre, Bonn, Germany.
| | - Sina Mackay
- Department of Epileptology, University of Bonn Medical Centre, Bonn, Germany
| | - Marcel Bausch
- Department of Epileptology, University of Bonn Medical Centre, Bonn, Germany
| | - Marcel S Kehl
- Department of Epileptology, University of Bonn Medical Centre, Bonn, Germany
| | - Valeri Borger
- Department of Neurosurgery, University of Bonn Medical Centre, Bonn, Germany
| | - Rainer Surges
- Department of Epileptology, University of Bonn Medical Centre, Bonn, Germany
| | - Florian Mormann
- Department of Epileptology, University of Bonn Medical Centre, Bonn, Germany
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14
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Blanpain LT, Chen E, Park J, Walelign MY, Gross RE, Cabaniss BT, Willie JT, Singer AC. Multisensory Flicker Modulates Widespread Brain Networks and Reduces Interictal Epileptiform Discharges in Humans. MEDRXIV : THE PREPRINT SERVER FOR HEALTH SCIENCES 2023:2023.03.14.23286691. [PMID: 36993248 PMCID: PMC10055448 DOI: 10.1101/2023.03.14.23286691] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Indexed: 06/19/2023]
Abstract
Modulating brain oscillations has strong therapeutic potential. However, commonly used non-invasive interventions such as transcranial magnetic or direct current stimulation have limited effects on deeper cortical structures like the medial temporal lobe. Repetitive audio-visual stimulation, or sensory flicker, modulates such structures in mice but little is known about its effects in humans. Using high spatiotemporal resolution, we mapped and quantified the neurophysiological effects of sensory flicker in human subjects undergoing presurgical intracranial seizure monitoring. We found that flicker modulates both local field potential and single neurons in higher cognitive regions, including the medial temporal lobe and prefrontal cortex, and that local field potential modulation is likely mediated via resonance of involved circuits. We then assessed how flicker affects pathological neural activity, specifically interictal epileptiform discharges, a biomarker of epilepsy also implicated in Alzheimer's and other diseases. In our patient population with focal seizure onsets, sensory flicker decreased the rate interictal epileptiform discharges. Our findings support the use of sensory flicker to modulate deeper cortical structures and mitigate pathological activity in humans.
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Affiliation(s)
- Lou T. Blanpain
- Department of Neurosurgery, Emory University School of Medicine, Atlanta, GA, USA
- Neuroscience Graduate Program, Graduate Division of Biological and Biomedical Sciences, Emory University, Atlanta, GA, USA
- Coulter Department of Biomedical Engineering, Georgia Institute of Technology & Emory University, Atlanta, GA, USA
| | - Emily. Chen
- Department of Neurosurgery, Emory University School of Medicine, Atlanta, GA, USA
| | - James Park
- Department of Neurosurgery, Emory University School of Medicine, Atlanta, GA, USA
| | - Michael Y. Walelign
- Department of Electrical and Computer Engineering, Georgia Institute of Technology, Atlanta, GA, USA
| | - Robert E. Gross
- Department of Neurosurgery, Emory University School of Medicine, Atlanta, GA, USA
| | - Brian T. Cabaniss
- Department of Neurology, Emory University School of Medicine, Atlanta, GA, USA
| | - Jon T. Willie
- Department of Neurosurgery, Washington University, St. Louis, MO, USA
| | - Annabelle C. Singer
- Neuroscience Graduate Program, Graduate Division of Biological and Biomedical Sciences, Emory University, Atlanta, GA, USA
- Coulter Department of Biomedical Engineering, Georgia Institute of Technology & Emory University, Atlanta, GA, USA
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15
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Umbach G, Tan R, Jacobs J, Pfeiffer BE, Lega B. Flexibility of functional neuronal assemblies supports human memory. Nat Commun 2022; 13:6162. [PMID: 36257934 PMCID: PMC9579146 DOI: 10.1038/s41467-022-33587-0] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/01/2021] [Accepted: 09/22/2022] [Indexed: 12/24/2022] Open
Abstract
Episodic memories, or consciously accessible memories of unique events, represent a key aspect of human cognition. Evidence from rodent models suggests that the neural representation of these complex memories requires cooperative firing of groups of neurons on short time scales, organized by gamma oscillations. These co-firing groups, termed "neuronal assemblies," represent a fundamental neurophysiological unit supporting memory. Using microelectrode data from neurosurgical patients, we identify neuronal assemblies in the human MTL and show that they exhibit consistent organization in their firing pattern based on gamma phase information. We connect these properties to memory performance across recording sessions. Finally, we describe how human neuronal assemblies flexibly adjust over longer time scales. Our findings provide key evidence linking assemblies to human episodic memory for the first time.
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Affiliation(s)
- Gray Umbach
- Department of Neurological Surgery, University of California San Francisco, San Francisco, CA, 94143, USA
| | - Ryan Tan
- Department of Neurological Surgery, University of Texas Southwestern, Dallas, TX, 75235, USA
| | - Joshua Jacobs
- Department of Biomedical Engineering, Columbia University, New York, NY, 10027, USA
| | - Brad E Pfeiffer
- Department of Neuroscience, University of Texas Southwestern, Dallas, TX, 75235, USA
| | - Bradley Lega
- Department of Neurological Surgery, University of Texas Southwestern, Dallas, TX, 75235, USA.
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16
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Yoo HB, Umbach G, Lega B. Episodic boundary cells in human medial temporal lobe during the free recall task. Hippocampus 2022; 32:481-487. [PMID: 35579307 PMCID: PMC10682840 DOI: 10.1002/hipo.23421] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/02/2021] [Revised: 03/31/2022] [Accepted: 04/25/2022] [Indexed: 11/11/2022]
Abstract
A necessary condition for forming episodic memories is the construction of specific episodes demarcated from other episodes in space and time. Evidence from studies of episodic memory formation using rodent models suggest that the medial temporal lobe (MTL) supports the representation of boundary information. Building on recent work using human microelectrode recordings as well, we hypothesized of human MTL neurons with firing rates sensitive to episodic boundary information. We identified 27 episodic boundary neurons out of 736 single neurons recorded across 27 subjects. Firing of these neurons increased at the beginning and end of mnemonically relevant episodes in the free recall task. We distinguish episodic boundary neurons from a population of ramping neurons (n = 58), which are time-sensitive neurons whose activity provides complementary information during episodic representation. Episodic boundary neurons exhibited a U-shaped activity pattern demonstrating increased activity after both beginning and end boundaries of encoding and retrieval epochs. We also describe evidence that the firing of boundary neurons within episodic boundaries is organized by hippocampal theta oscillations, using spike-field coherence metrics.
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Affiliation(s)
- Hye Bin Yoo
- Department of Neurological Surgery, University of Texas Southwestern, Dallas, Texas, USA
| | - Gray Umbach
- Department of Neurological Surgery, University of Texas Southwestern, Dallas, Texas, USA
| | - Bradley Lega
- Department of Neurological Surgery, University of Texas Southwestern, Dallas, Texas, USA
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17
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Boran E, Hilfiker P, Stieglitz L, Sarnthein J, Klaver P. Persistent neuronal firing in the medial temporal lobe supports performance and workload of visual working memory in humans. Neuroimage 2022; 254:119123. [PMID: 35321857 DOI: 10.1016/j.neuroimage.2022.119123] [Citation(s) in RCA: 10] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/14/2021] [Revised: 03/18/2022] [Accepted: 03/19/2022] [Indexed: 11/25/2022] Open
Abstract
The involvement of the medial temporal lobe (MTL) in working memory is controversially discussed. Recent findings suggest that persistent neural firing in the hippocampus during maintenance in verbal working memory is associated with workload. Here, we recorded single neuron firing in 13 epilepsy patients (7 male) while they performed a visual working memory task. The number of coloured squares in the stimulus set determined the workload of the trial. Performance was almost perfect for low workload (1 and 2 squares) and dropped at high workload (4 and 6 squares), suggesting that high workload exceeded working memory capacity. We identified maintenance neurons in MTL neurons that showed persistent firing during the maintenance period. More maintenance neurons were found in the hippocampus for trials with correct compared to incorrect performance. Maintenance neurons increased and decreased firing in the hippocampus and increased firing in the entorhinal cortex for high compared to low workload. Population firing predicted workload particularly during the maintenance period. Prediction accuracy of workload based on single-trial activity during maintenance was strongest for neurons in the entorhinal cortex and hippocampus. The data suggest that persistent neural firing in the MTL reflects a domain-general process of maintenance supporting performance and workload of multiple items in working memory below and beyond working memory capacity. Persistent neural firing during maintenance in the entorhinal cortex may be associated with its preference to process visual-spatial arrays.
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Affiliation(s)
- Ece Boran
- Department of Neurosurgery, University Hospital Zurich (USZ), University of Zurich, 8091 Zurich, Switzerland
| | | | - Lennart Stieglitz
- Department of Neurosurgery, University Hospital Zurich (USZ), University of Zurich, 8091 Zurich, Switzerland
| | - Johannes Sarnthein
- Department of Neurosurgery, University Hospital Zurich (USZ), University of Zurich, 8091 Zurich, Switzerland; Neuroscience Center Zurich, ETH Zurich, 8057 Zurich, Switzerland.
| | - Peter Klaver
- University of Teacher Education in Special Needs, 8050 Zurich, Switzerland; Institute of Psychology, University of Zurich, 8050 Zurich, Switzerland; School of Psychology, University of Surrey, GU2 7XH Guildford, UK.
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18
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Lehongre K, Lambrecq V, Whitmarsh S, Frazzini V, Cousyn L, Soleil D, Fernandez-Vidal S, Mathon B, Houot M, Lemarechal JD, Clemenceau S, Hasboun D, Adam C, Navarro V. Long-term deep intracerebral microelectrode recordings in patients with drug-resistant epilepsy: proposed guidelines based on 10-year experience. Neuroimage 2022; 254:119116. [PMID: 35318150 DOI: 10.1016/j.neuroimage.2022.119116] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/26/2021] [Revised: 02/23/2022] [Accepted: 03/15/2022] [Indexed: 02/08/2023] Open
Abstract
PURPOSE Human neuronal activity, recorded in vivo from microelectrodes, may offer valuable insights into physiological mechanisms underlying human cognition and pathophysiological mechanisms of brain diseases, in particular epilepsy. Continuous and long-term recordings are necessary to monitor non predictable pathological and physiological activities like seizures or sleep. Because of their high impedance, microelectrodes are more sensitive to noise than macroelectrodes. Low noise levels are crucial to detect action potentials from background noise, and to further isolate single neuron activities. Therefore, long-term recordings of multi-unit activity remains a challenge. We shared here our experience with microelectrode recordings and our efforts to reduce noise levels in order to improve signal quality. We also provided detailed technical guidelines for the connection, recording, imaging and signal analysis of microelectrode recordings. RESULTS During the last 10 years, we implanted 122 bundles of Behnke-Fried hybrid macro-microelectrodes, in 56 patients with pharmacoresistant focal epilepsy. Microbundles were implanted in the temporal lobe (74%), as well as frontal (15%), parietal (6%) and occipital (5%) lobes. Low noise levels depended on our technical setup. The noise reduction was mainly obtained after electrical insulation of the patient's recording room and the use of a reinforced microelectrode model, reaching median root mean square values of 5.8 µV. Seventy percent of the bundles could record multi-units activities (MUA), on around 3 out of 8 wires per bundle and for an average of 12 days. Seizures were recorded by microelectrodes in 91% of patients, when recorded continuously, and MUA were recorded during seizures for 75 % of the patients after the insulation of the room. Technical guidelines are proposed for (i) electrode tails manipulation and protection during surgical bandage and connection to both clinical and research amplifiers, (ii) electrical insulation of the patient's recording room and shielding, (iii) data acquisition and storage, and (iv) single-units activities analysis. CONCLUSIONS We progressively improved our recording setup and are now able to record (i) microelectrode signals with low noise level up to 3 weeks duration, and (ii) MUA from an increased number of wires . We built a step by step procedure from electrode trajectory planning to recordings. All these delicate steps are essential for continuous long-term recording of units in order to advance in our understanding of both the pathophysiology of ictogenesis and the neuronal coding of cognitive and physiological functions.
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Affiliation(s)
- Katia Lehongre
- Sorbonne Université, Paris Brain Institute - Institut du Cerveau, ICM, INSERM, CNRS, APHP, Pitié-Salpêtrière Hospital, Paris France
| | - Virginie Lambrecq
- Sorbonne Université, Paris Brain Institute - Institut du Cerveau, ICM, INSERM, CNRS, APHP, Pitié-Salpêtrière Hospital, Paris France; AP-HP, Département de Neurophysiologie, Hôpital Pitié-Salpêtrière, DMU Neurosciences, Paris, France; AP-HP, Epilepsy Unit, Pitié-Salpêtrière Hospital, DMU Neurosciences, Paris, France
| | - Stephen Whitmarsh
- Sorbonne Université, Paris Brain Institute - Institut du Cerveau, ICM, INSERM, CNRS, APHP, Pitié-Salpêtrière Hospital, Paris France
| | - Valerio Frazzini
- Sorbonne Université, Paris Brain Institute - Institut du Cerveau, ICM, INSERM, CNRS, APHP, Pitié-Salpêtrière Hospital, Paris France; AP-HP, Département de Neurophysiologie, Hôpital Pitié-Salpêtrière, DMU Neurosciences, Paris, France; AP-HP, Epilepsy Unit, Pitié-Salpêtrière Hospital, DMU Neurosciences, Paris, France
| | - Louis Cousyn
- Sorbonne Université, Paris Brain Institute - Institut du Cerveau, ICM, INSERM, CNRS, APHP, Pitié-Salpêtrière Hospital, Paris France; AP-HP, Epilepsy Unit, Pitié-Salpêtrière Hospital, DMU Neurosciences, Paris, France
| | - Daniel Soleil
- Bureau d'Etudes CEMS, 801 Route d'Eyguieres, 13 560 Senas, France
| | - Sara Fernandez-Vidal
- Sorbonne Université, Paris Brain Institute - Institut du Cerveau, ICM, INSERM, CNRS, APHP, Pitié-Salpêtrière Hospital, Paris France
| | - Bertrand Mathon
- Sorbonne Université, Paris Brain Institute - Institut du Cerveau, ICM, INSERM, CNRS, APHP, Pitié-Salpêtrière Hospital, Paris France; AP-HP, Service de Neurochirurgie, Hôpital Pitié-Salpêtrière, Paris, France
| | - Marion Houot
- Centre of Excellence of Neurodegenerative Disease (CoEN), AP-HP, Pitié-Salpêtrière Hospital, Paris, France; Institute of Memory and Alzheimer's Disease (IM2A), Department of Neurology, AP-HP, Pitié-Salpêtrière Hospital, Paris, France.; Clinical Investigation Centre, Institut du Cerveau et de la Moelle épinière (ICM), Pitié-Salpêtrière Hospital Paris, France
| | - Jean-Didier Lemarechal
- Sorbonne Université, Paris Brain Institute - Institut du Cerveau, ICM, INSERM, CNRS, APHP, Pitié-Salpêtrière Hospital, Paris France; Institut de Neurosciences des Systèmes, Aix-Marseille Université, Marseille, France
| | | | - Dominique Hasboun
- Sorbonne Université, Paris Brain Institute - Institut du Cerveau, ICM, INSERM, CNRS, APHP, Pitié-Salpêtrière Hospital, Paris France; AP-HP, Service de Neuroradiologie, Pitié-Salpêtrière Hospital, Paris, France
| | - Claude Adam
- AP-HP, Epilepsy Unit, Pitié-Salpêtrière Hospital, DMU Neurosciences, Paris, France
| | - Vincent Navarro
- Sorbonne Université, Paris Brain Institute - Institut du Cerveau, ICM, INSERM, CNRS, APHP, Pitié-Salpêtrière Hospital, Paris France; AP-HP, Département de Neurophysiologie, Hôpital Pitié-Salpêtrière, DMU Neurosciences, Paris, France; AP-HP, Epilepsy Unit, Pitié-Salpêtrière Hospital, DMU Neurosciences, Paris, France; AP-HP, Center of Reference for Rare Epilepsies, Pitié-Salpêtrière Hospital, Paris, France.
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19
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Kutter EF, Boström J, Elger CE, Nieder A, Mormann F. Neuronal codes for arithmetic rule processing in the human brain. Curr Biol 2022; 32:1275-1284.e4. [DOI: 10.1016/j.cub.2022.01.054] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/04/2020] [Revised: 12/20/2021] [Accepted: 01/20/2022] [Indexed: 11/25/2022]
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20
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Roux F, Parish G, Chelvarajah R, Rollings DT, Sawlani V, Hamer H, Gollwitzer S, Kreiselmeyer G, ter Wal MJ, Kolibius L, Staresina BP, Wimber M, Self MW, Hanslmayr S. Oscillations support short latency co-firing of neurons during human episodic memory formation. eLife 2022; 11:78109. [PMID: 36448671 PMCID: PMC9731574 DOI: 10.7554/elife.78109] [Citation(s) in RCA: 13] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/23/2022] [Accepted: 11/29/2022] [Indexed: 12/05/2022] Open
Abstract
Theta and gamma oscillations in the medial temporal lobe are suggested to play a critical role for human memory formation via establishing synchrony in neural assemblies. Arguably, such synchrony facilitates efficient information transfer between neurons and enhances synaptic plasticity, both of which benefit episodic memory formation. However, to date little evidence exists from humans that would provide direct evidence for such a specific role of theta and gamma oscillations for episodic memory formation. Here, we investigate how oscillations shape the temporal structure of neural firing during memory formation in the medial temporal lobe. We measured neural firing and local field potentials in human epilepsy patients via micro-wire electrode recordings to analyze whether brain oscillations are related to co-incidences of firing between neurons during successful and unsuccessful encoding of episodic memories. The results show that phase-coupling of neurons to faster theta and gamma oscillations correlates with co-firing at short latencies (~20-30 ms) and occurs during successful memory formation. Phase-coupling at slower oscillations in these same frequency bands, in contrast, correlates with longer co-firing latencies and occurs during memory failure. Thus, our findings suggest that neural oscillations play a role for the synchronization of neural firing in the medial temporal lobe during the encoding of episodic memories.
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Affiliation(s)
- Frédéric Roux
- School of Psychology, Centre for Human Brain Health, University of BirminghamBirminghamUnited Kingdom
| | - George Parish
- School of Psychology, Centre for Human Brain Health, University of BirminghamBirminghamUnited Kingdom
| | - Ramesh Chelvarajah
- School of Psychology, Centre for Human Brain Health, University of BirminghamBirminghamUnited Kingdom,Complex Epilepsy and Surgery Service, Neuroscience Department, Queen Elizabeth Hospital BirminghamBirminghamUnited Kingdom
| | - David T Rollings
- Complex Epilepsy and Surgery Service, Neuroscience Department, Queen Elizabeth Hospital BirminghamBirminghamUnited Kingdom
| | - Vijay Sawlani
- School of Psychology, Centre for Human Brain Health, University of BirminghamBirminghamUnited Kingdom,Complex Epilepsy and Surgery Service, Neuroscience Department, Queen Elizabeth Hospital BirminghamBirminghamUnited Kingdom
| | - Hajo Hamer
- Epilepsy Center, Department of Neurology, University Hospital ErlangenErlangenGermany
| | - Stephanie Gollwitzer
- Epilepsy Center, Department of Neurology, University Hospital ErlangenErlangenGermany
| | - Gernot Kreiselmeyer
- Epilepsy Center, Department of Neurology, University Hospital ErlangenErlangenGermany
| | - Marije J ter Wal
- School of Psychology, Centre for Human Brain Health, University of BirminghamBirminghamUnited Kingdom
| | - Luca Kolibius
- School of Psychology and Neuroscience, Centre for Cognitive Neuroimaging, University of GlasgowGlasgowUnited Kingdom
| | - Bernhard P Staresina
- School of Psychology, Centre for Human Brain Health, University of BirminghamBirminghamUnited Kingdom,Department of Experimental Psychology, University of OxfordOxfordUnited Kingdom
| | - Maria Wimber
- School of Psychology, Centre for Human Brain Health, University of BirminghamBirminghamUnited Kingdom,School of Psychology and Neuroscience, Centre for Cognitive Neuroimaging, University of GlasgowGlasgowUnited Kingdom
| | - Matthew W Self
- Department of Vision and Cognition, Netherlands Institute for Neuroscience, an institute of the Royal Netherlands Academy of Art and SciencesAmsterdamNetherlands
| | - Simon Hanslmayr
- School of Psychology, Centre for Human Brain Health, University of BirminghamBirminghamUnited Kingdom,School of Psychology and Neuroscience, Centre for Cognitive Neuroimaging, University of GlasgowGlasgowUnited Kingdom
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21
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Yoo HB, Umbach G, Lega B. Neurons in the human medial temporal lobe track multiple temporal contexts during episodic memory processing. Neuroimage 2021; 245:118689. [PMID: 34742943 PMCID: PMC8802214 DOI: 10.1016/j.neuroimage.2021.118689] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/02/2021] [Revised: 10/23/2021] [Accepted: 10/28/2021] [Indexed: 01/04/2023] Open
Abstract
Episodic memory requires associating items with temporal context, a process for which the medial temporal lobe (MTL) is critical. This study uses recordings from 27 human subjects who were undergoing surgical intervention for intractable epilepsy. These same data were also utilized in Umbach et al. (2020). We identify 103 memory-sensitive neurons in the hippocampus and entorhinal cortex, whose firing rates predicted successful episodic memory encoding as subjects performed a verbal free recall task. These neurons exhibit important properties. First, as predicted from the temporal context model, they demonstrate reinstatement of firing patterns observed during encoding at the time of retrieval. The magnitude of reinstatement predicted the tendency of subjects to cluster retrieved memory items according to input serial position. Also, we found that spiking activity of these neurons was locked to the phase of hippocampal theta oscillations, but that the mean phase of spiking shifted between memory encoding versus retrieval. This unique observation is consistent with predictions of the “Separate Phases at Encoding And Retrieval (SPEAR)” model. Together, the properties we identify for memory-sensitive neurons characterize direct electrophysiological mechanisms for the representation of contextual information in the human MTL.
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Affiliation(s)
- Hye Bin Yoo
- Department of Neurological Surgery, University of Texas Southwestern, Dallas, TX 75390, USA
| | - Gray Umbach
- Department of Neurological Surgery, University of Texas Southwestern, Dallas, TX 75390, USA
| | - Bradley Lega
- Department of Neurological Surgery, University of Texas Southwestern, Dallas, TX 75390, USA.
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22
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Concept neurons in the human medial temporal lobe flexibly represent abstract relations between concepts. Nat Commun 2021; 12:6164. [PMID: 34697305 PMCID: PMC8545952 DOI: 10.1038/s41467-021-26327-3] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/15/2020] [Accepted: 09/28/2021] [Indexed: 11/09/2022] Open
Abstract
Concept neurons in the medial temporal lobe respond to semantic features of presented stimuli. Analyzing 61 concept neurons recorded from twelve patients who underwent surgery to treat epilepsy, we show that firing patterns of concept neurons encode relations between concepts during a picture comparison task. Thirty-three of these responded to non-preferred stimuli with a delayed but well-defined onset whenever the task required a comparison to a response-eliciting concept, but not otherwise. Supporting recent theories of working memory, concept neurons increased firing whenever attention was directed towards this concept and could be reactivated after complete activity silence. Population cross-correlations of pairs of concept neurons exhibited order-dependent asymmetric peaks specifically when their response-eliciting concepts were to be compared. Our data are consistent with synaptic mechanisms that support reinstatement of concepts and their relations after activity silence, flexibly induced through task-specific sequential activation. This way arbitrary contents of experience could become interconnected in both working and long-term memory. It is unclear how distinct concepts are processed in the brain. Here, the authors recorded from concept cells in human subjects with epilepsy and found that a subset of concept cells responded to non-preferred concepts if those non-preferred concepts required comparison to a preferred concept.
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Qasim SE, Fried I, Jacobs J. Phase precession in the human hippocampus and entorhinal cortex. Cell 2021; 184:3242-3255.e10. [PMID: 33979655 PMCID: PMC8195854 DOI: 10.1016/j.cell.2021.04.017] [Citation(s) in RCA: 62] [Impact Index Per Article: 15.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/08/2020] [Revised: 02/18/2021] [Accepted: 04/09/2021] [Indexed: 12/11/2022]
Abstract
Knowing where we are, where we have been, and where we are going is critical to many behaviors, including navigation and memory. One potential neuronal mechanism underlying this ability is phase precession, in which spatially tuned neurons represent sequences of positions by activating at progressively earlier phases of local network theta oscillations. Based on studies in rodents, researchers have hypothesized that phase precession may be a general neural pattern for representing sequential events for learning and memory. By recording human single-neuron activity during spatial navigation, we show that spatially tuned neurons in the human hippocampus and entorhinal cortex exhibit phase precession. Furthermore, beyond the neural representation of locations, we show evidence for phase precession related to specific goal states. Our findings thus extend theta phase precession to humans and suggest that this phenomenon has a broad functional role for the neural representation of both spatial and non-spatial information.
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Affiliation(s)
- Salman E Qasim
- Department of Biomedical Engineering, Columbia University, New York, NY 10027, USA
| | - Itzhak Fried
- Department of Neurological Surgery, University of California, Los Angeles, Los Angeles, CA 90095, USA
| | - Joshua Jacobs
- Department of Biomedical Engineering, Columbia University, New York, NY 10027, USA.
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24
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Duplicate Detection of Spike Events: A Relevant Problem in Human Single-Unit Recordings. Brain Sci 2021; 11:brainsci11060761. [PMID: 34201115 PMCID: PMC8228483 DOI: 10.3390/brainsci11060761] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/26/2021] [Revised: 05/29/2021] [Accepted: 06/01/2021] [Indexed: 11/21/2022] Open
Abstract
Single-unit recordings in the brain of behaving human subjects provide a unique opportunity to advance our understanding of neural mechanisms of cognition. These recordings are exclusively performed in medical centers during diagnostic or therapeutic procedures. The presence of medical instruments along with other aspects of the hospital environment limit the control of electrical noise compared to animal laboratory environments. Here, we highlight the problem of an increased occurrence of simultaneous spike events on different recording channels in human single-unit recordings. Most of these simultaneous events were detected in clusters previously labeled as artifacts and showed similar waveforms. These events may result from common external noise sources or from different micro-electrodes recording activity from the same neuron. To address the problem of duplicate recorded events, we introduce an open-source algorithm to identify these artificial spike events based on their synchronicity and waveform similarity. Applying our method to a comprehensive dataset of human single-unit recordings, we demonstrate that our algorithm can substantially increase the data quality of these recordings. Given our findings, we argue that future studies of single-unit activity recorded under noisy conditions should employ algorithms of this kind to improve data quality.
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25
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Derner M, Chaieb L, Dehnen G, Reber TP, Borger V, Surges R, Staresina BP, Mormann F, Fell J. Auditory Beat Stimulation Modulates Memory-Related Single-Neuron Activity in the Human Medial Temporal Lobe. Brain Sci 2021; 11:brainsci11030364. [PMID: 33809386 PMCID: PMC8000797 DOI: 10.3390/brainsci11030364] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/04/2020] [Revised: 02/26/2021] [Accepted: 03/10/2021] [Indexed: 11/17/2022] Open
Abstract
Auditory beats are amplitude-modulated signals (monaural beats) or signals that subjectively cause the perception of an amplitude modulation (binaural beats). We investigated the effects of monaural and binaural 5 Hz beat stimulation on neural activity and memory performance in neurosurgical patients performing an associative recognition task. Previously, we had reported that these beat stimulation conditions modulated memory performance in opposite directions. Here, we analyzed data from a patient subgroup, in which microwires were implanted in the amygdala, hippocampus, entorhinal cortex and parahippocampal cortex. We identified neurons responding with firing rate changes to binaural versus monaural 5 Hz beat stimulation. In these neurons, we correlated the differences in firing rates for binaural versus monaural beats to the memory-related differences for remembered versus forgotten items and associations. In the left hemisphere, we detected statistically significant negative correlations between firing rate differences for binaural versus monaural beats and remembered versus forgotten items/associations. Importantly, such negative correlations were also observed between beat stimulation-related firing rate differences in the pre-stimulus window and memory-related firing rate differences in the post-stimulus windows. In line with concepts of homeostatic plasticity, our findings suggest that beat stimulation is linked to memory performance via shifting baseline firing levels.
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Affiliation(s)
- Marlene Derner
- Department of Epileptology, Venusberg-Campus 1, University Hospital Bonn, 53127 Bonn, Germany; (M.D.); (L.C.); (G.D.); (T.P.R.); (R.S.); (F.M.)
| | - Leila Chaieb
- Department of Epileptology, Venusberg-Campus 1, University Hospital Bonn, 53127 Bonn, Germany; (M.D.); (L.C.); (G.D.); (T.P.R.); (R.S.); (F.M.)
| | - Gert Dehnen
- Department of Epileptology, Venusberg-Campus 1, University Hospital Bonn, 53127 Bonn, Germany; (M.D.); (L.C.); (G.D.); (T.P.R.); (R.S.); (F.M.)
| | - Thomas P. Reber
- Department of Epileptology, Venusberg-Campus 1, University Hospital Bonn, 53127 Bonn, Germany; (M.D.); (L.C.); (G.D.); (T.P.R.); (R.S.); (F.M.)
- Faculty of Psychology, Swiss Distance University Institute, Ueberlandstr. 12, 3900 Brig, Switzerland
| | - Valeri Borger
- Department of Neurosurgery, Venusberg-Campus 1, University Hospital Bonn, 53127 Bonn, Germany;
| | - Rainer Surges
- Department of Epileptology, Venusberg-Campus 1, University Hospital Bonn, 53127 Bonn, Germany; (M.D.); (L.C.); (G.D.); (T.P.R.); (R.S.); (F.M.)
| | - Bernhard P. Staresina
- Centre for Human Brain Health, School of Psychology, University of Birmingham, Birmingham B15 2TT, UK;
| | - Florian Mormann
- Department of Epileptology, Venusberg-Campus 1, University Hospital Bonn, 53127 Bonn, Germany; (M.D.); (L.C.); (G.D.); (T.P.R.); (R.S.); (F.M.)
| | - Juergen Fell
- Department of Epileptology, Venusberg-Campus 1, University Hospital Bonn, 53127 Bonn, Germany; (M.D.); (L.C.); (G.D.); (T.P.R.); (R.S.); (F.M.)
- Correspondence:
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26
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Hagemann A, Wilting J, Samimizad B, Mormann F, Priesemann V. Assessing criticality in pre-seizure single-neuron activity of human epileptic cortex. PLoS Comput Biol 2021; 17:e1008773. [PMID: 33684101 PMCID: PMC7971851 DOI: 10.1371/journal.pcbi.1008773] [Citation(s) in RCA: 16] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/07/2020] [Revised: 03/18/2021] [Accepted: 02/04/2021] [Indexed: 11/18/2022] Open
Abstract
Epileptic seizures are characterized by abnormal and excessive neural activity, where cortical network dynamics seem to become unstable. However, most of the time, during seizure-free periods, cortex of epilepsy patients shows perfectly stable dynamics. This raises the question of how recurring instability can arise in the light of this stable default state. In this work, we examine two potential scenarios of seizure generation: (i) epileptic cortical areas might generally operate closer to instability, which would make epilepsy patients generally more susceptible to seizures, or (ii) epileptic cortical areas might drift systematically towards instability before seizure onset. We analyzed single-unit spike recordings from both the epileptogenic (focal) and the nonfocal cortical hemispheres of 20 epilepsy patients. We quantified the distance to instability in the framework of criticality, using a novel estimator, which enables an unbiased inference from a small set of recorded neurons. Surprisingly, we found no evidence for either scenario: Neither did focal areas generally operate closer to instability, nor were seizures preceded by a drift towards instability. In fact, our results from both pre-seizure and seizure-free intervals suggest that despite epilepsy, human cortex operates in the stable, slightly subcritical regime, just like cortex of other healthy mammalians.
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Affiliation(s)
- Annika Hagemann
- Max-Planck-Institute for Dynamics and Self-Organization, Göttingen, Germany
| | - Jens Wilting
- Max-Planck-Institute for Dynamics and Self-Organization, Göttingen, Germany
| | - Bita Samimizad
- Department of Epileptology, University of Bonn Medical Centre, Bonn, Germany
| | - Florian Mormann
- Department of Epileptology, University of Bonn Medical Centre, Bonn, Germany
| | - Viola Priesemann
- Max-Planck-Institute for Dynamics and Self-Organization, Göttingen, Germany
- Bernstein Center for Computational Neuroscience (BCCN) Göttingen, Germany
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27
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Dataset of spiking and LFP activity invasively recorded in the human amygdala during aversive dynamic stimuli. Sci Data 2021; 8:9. [PMID: 33446665 PMCID: PMC7809031 DOI: 10.1038/s41597-020-00790-x] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/08/2020] [Accepted: 12/01/2020] [Indexed: 11/08/2022] Open
Abstract
We present an electrophysiological dataset collected from the amygdalae of nine participants attending a visual dynamic stimulation of emotional aversive content. The participants were patients affected by epilepsy who underwent preoperative invasive monitoring in the mesial temporal lobe. Participants were presented with dynamic visual sequences of fearful faces (aversive condition), interleaved with sequences of neutral landscapes (neutral condition). The dataset contains the simultaneous recording of intracranial EEG (iEEG) and neuronal spike times and waveforms, and localization information for iEEG electrodes. Participant characteristics and trial information are provided. We technically validated this dataset and provide here the spike sorting quality metrics and the spectra of iEEG signals. This dataset allows the investigation of amygdalar response to dynamic aversive stimuli at multiple spatial scales, from the macroscopic EEG to the neuronal firing in the human brain.
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28
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Face-Selective Units in Human Ventral Temporal Cortex Reactivate during Free Recall. J Neurosci 2021; 41:3386-3399. [PMID: 33431634 DOI: 10.1523/jneurosci.2918-19.2020] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/01/2019] [Revised: 08/15/2020] [Accepted: 09/08/2020] [Indexed: 12/31/2022] Open
Abstract
Research in functional neuroimaging has suggested that category-selective regions of visual cortex, including the ventral temporal cortex (VTC), can be reactivated endogenously through imagery and recall. Face representation in the monkey face-patch system has been well studied and is an attractive domain in which to explore these processes in humans. The VTCs of 8 human subjects (4 female) undergoing invasive monitoring for epilepsy surgery were implanted with microelectrodes. Most (26 of 33) category-selective units showed specificity for face stimuli. Different face exemplars evoked consistent and discriminable responses in the population of units sampled. During free recall, face-selective units preferentially reactivated in the absence of visual stimulation during a 2 s window preceding face recall events. Furthermore, we show that in at least 1 subject, the identity of the recalled face could be predicted by comparing activity preceding recall events to activity evoked by visual stimulation. We show that face-selective units in the human VTC are reactivated endogenously, and present initial evidence that consistent representations of individual face exemplars are specifically reactivated in this manner.SIGNIFICANCE STATEMENT The role of "top-down" endogenous reactivation of native representations in higher sensory areas is poorly understood in humans. We conducted the first detailed single-unit survey of ventral temporal cortex (VTC) in human subjects, showing that, similarly to nonhuman primates, humans encode different faces using different rate codes. Then, we demonstrated that, when subjects recalled and imagined a given face, VTC neurons reactivated with the same rate codes as when subjects initially viewed that face. This suggests that the VTC units not only carry durable representations of faces, but that those representations can be endogenously reactivated via "top-down" mechanisms.
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29
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Identification and quantification of neuronal ensembles in optical imaging experiments. J Neurosci Methods 2020; 351:109046. [PMID: 33359231 DOI: 10.1016/j.jneumeth.2020.109046] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/01/2020] [Revised: 12/12/2020] [Accepted: 12/15/2020] [Indexed: 12/30/2022]
Abstract
Recent technical advances in molecular biology and optical imaging have made it possible to record from up to thousands of densely packed neurons in superficial and deep brain regions in vivo, with cellular subtype specificity and high spatiotemporal fidelity. Such optical neurotechnologies are enabling increasingly fine-scaled studies of neuronal circuits and reliably co-active groups of neurons, so-called ensembles. Neuronal ensembles are thought to constitute the basic functional building blocks of brain systems, potentially exhibiting collective computational properties. While the technical framework of in vivo optical imaging and quantification of neuronal activity follows certain widely held standards, analytical methods for study of neuronal co-activity and ensembles lack consensus and are highly varied across the field. Here we provide a comprehensive step-by-step overview of theoretical, experimental, and analytical considerations for the identification and quantification of neuronal ensemble dynamics in high-resolution in vivo optical imaging studies.
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30
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Abstract
The organization of temporal information is critical for the encoding and retrieval of episodic memories. In the rodent hippocampus and entorhinal cortex, evidence accumulated over the last decade suggests that populations of "time cells" in the hippocampus encode temporal information. We identify time cells in humans using intracranial microelectrode recordings obtained from 27 human epilepsy patients who performed an episodic memory task. We show that time cell activity predicts the temporal organization of retrieved memory items. We also uncover evidence of ramping cell activity in humans, which represents a complementary type of temporal information. These findings establish a cellular mechanism for the representation of temporal information in the human brain needed to form episodic memories.
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31
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Martínez CGB, Niediek J, Mormann F, Andrzejak RG. Seizure Onset Zone Lateralization Using a Non-linear Analysis of Micro vs. Macro Electroencephalographic Recordings During Seizure-Free Stages of the Sleep-Wake Cycle From Epilepsy Patients. Front Neurol 2020; 11:553885. [PMID: 33041993 PMCID: PMC7527464 DOI: 10.3389/fneur.2020.553885] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/20/2020] [Accepted: 08/12/2020] [Indexed: 11/23/2022] Open
Abstract
The application of non-linear signal analysis techniques to biomedical data is key to improve our knowledge about complex physiological and pathological processes. In particular, the use of non-linear techniques to study electroencephalographic (EEG) recordings can provide an advanced characterization of brain dynamics. In epilepsy these dynamics are altered at different spatial scales of neuronal organization. We therefore apply non-linear signal analysis to EEG recordings from epilepsy patients derived with intracranial hybrid electrodes, which are composed of classical macro contacts and micro wires. Thereby, these electrodes record EEG at two different spatial scales. Our aim is to test the degree to which the analysis of the EEG recorded at these different scales allows us to characterize the neuronal dynamics affected by epilepsy. For this purpose, we retrospectively analyzed long-term recordings performed during five nights in three patients during which no seizures took place. As a benchmark we used the accuracy with which this analysis allows determining the hemisphere that contains the seizure onset zone, which is the brain area where clinical seizures originate. We applied the surrogate-corrected non-linear predictability score (ψ), a non-linear signal analysis technique which was shown previously to be useful for the lateralization of the seizure onset zone from classical intracranial EEG macro contact recordings. Higher values of ψ were found predominantly for signals recorded from the hemisphere containing the seizure onset zone as compared to signals recorded from the opposite hemisphere. These differences were found not only for the EEG signals recorded with macro contacts, but also for those recorded with micro wires. In conclusion, the information obtained from the analysis of classical macro EEG contacts can be complemented by the one of micro wire EEG recordings. This combined approach may therefore help to further improve the degree to which quantitative EEG analysis can contribute to the diagnostics in epilepsy patients.
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Affiliation(s)
- Cristina G B Martínez
- Department of Communication and Information Technologies, Universitat Pompeu Fabra, Barcelona, Spain
| | - Johannes Niediek
- Edmond and Lily Safra Center for Brain Sciences, The Hebrew University of Jerusalem, Jerusalem, Israel
| | - Florian Mormann
- Department of Epileptology, University of Bonn, Bonn, Germany
| | - Ralph G Andrzejak
- Department of Communication and Information Technologies, Universitat Pompeu Fabra, Barcelona, Spain
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32
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Unruh-Pinheiro A, Hill MR, Weber B, Boström J, Elger CE, Mormann F. Single-Neuron Correlates of Decision Confidence in the Human Medial Temporal Lobe. Curr Biol 2020; 30:4722-4732.e5. [PMID: 33035483 DOI: 10.1016/j.cub.2020.09.021] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/25/2020] [Revised: 07/17/2020] [Accepted: 09/07/2020] [Indexed: 12/26/2022]
Abstract
The human medial temporal lobe (MTL) has been suggested to play a role in valuation. However, little is known about its role in binary decisions and metacognition. We performed two decision-making tasks while recording from neurons in the human MTL. During a break, subjects consumed their preferred food item to satiation and subsequently repeated both tasks. We identified both a persistent and a transient modulation of the neural activity. Two independent subpopulations of neurons showed a persistent correlation of their firing rates with either decision confidence or reaction times. Importantly, the changes in confidence and reaction time between experimental sets were accompanied by a correlated change in the neural activity, and this correlation lasted as long as it was relevant for the behavioral task. Previous studies have suggested a transient modulation of the neural activity in the human MTL correlated with subjective value. However, in our study, neither subjective value nor unsigned value could explain this transient activity better than the nutritional features of the stimuli, calling into question the role of the human MTL in valuation.
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Affiliation(s)
- Alexander Unruh-Pinheiro
- Department of Epileptology, University of Bonn Medical Center, Venusberg-Campus 1, 53127 Bonn, Germany
| | - Michael R Hill
- Department of Epileptology, University of Bonn Medical Center, Venusberg-Campus 1, 53127 Bonn, Germany
| | - Bernd Weber
- Department of Epileptology, University of Bonn Medical Center, Venusberg-Campus 1, 53127 Bonn, Germany; Center for Economics and Neuroscience, University of Bonn, Venusberg-Campus 1, 53127 Bonn, Germany
| | - Jan Boström
- Department of Neurosurgery, University of Bonn Medical Center, Venusberg-Campus 1, 53127 Bonn, Germany
| | - Christian E Elger
- Department of Epileptology, University of Bonn Medical Center, Venusberg-Campus 1, 53127 Bonn, Germany
| | - Florian Mormann
- Department of Epileptology, University of Bonn Medical Center, Venusberg-Campus 1, 53127 Bonn, Germany.
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33
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Bröhl T, Rings T, Lehnertz K. Von Interaktionen zu Interaktionsnetzwerken: Zeitabhängige
funktionelle Netzwerke am Beispiel der Epilepsie. KLIN NEUROPHYSIOL 2020. [DOI: 10.1055/a-1195-9190] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
Abstract
ZusammenfassungDas menschliche Gehirn ist ein komplexes Netzwerk aus interagierenden
nichtstationären Subsystemen (Netzwerk von Netzwerken), deren
komplizierte räumlich-zeitliche Dynamiken bis heute nur unzureichend
verstanden sind. Dabei versprechen aktuelle Entwicklungen im Bereich der
Zeitreihenanalyse sowie der Theorie komplexer Netzwerke neue und verbesserte
Einblicke in die Dynamiken von Hirnnetzwerken auf verschiedenen
räumlich-zeitlichen Skalen. Wir geben einen Überblick
über diese Entwicklungen und besprechen am Beispiel
zeitabhängiger epileptischer Hirnnetzwerke Fortschritte im
Verständnis von Hirndynamiken, die über multiple Skalen
hinweg variieren.
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Affiliation(s)
- Timo Bröhl
- Klinik und Poliklinik für Epileptologie,
Universitätsklinikum Bonn, Bonn
- Helmholtz Institut für Strahlen- und Kernphysik,
Bonn
| | - Thorsten Rings
- Klinik und Poliklinik für Epileptologie,
Universitätsklinikum Bonn, Bonn
- Helmholtz Institut für Strahlen- und Kernphysik,
Bonn
| | - Klaus Lehnertz
- Klinik und Poliklinik für Epileptologie,
Universitätsklinikum Bonn, Bonn
- Helmholtz Institut für Strahlen- und Kernphysik,
Bonn
- Interdisziplinäres Zentrum für komplexe Systeme,
Bonn
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34
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Derner M, Dehnen G, Chaieb L, Reber TP, Borger V, Surges R, Staresina BP, Mormann F, Fell J. Patterns of single-neuron activity during associative recognition memory in the human medial temporal lobe. Neuroimage 2020; 221:117214. [PMID: 32755669 DOI: 10.1016/j.neuroimage.2020.117214] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/17/2020] [Revised: 07/23/2020] [Accepted: 07/27/2020] [Indexed: 10/23/2022] Open
Abstract
Electrophysiological activity in medial temporal lobe (MTL) structures is pivotal for declarative long-term memory. Single-neuron and microcircuit findings capitalizing on human microwire recordings from the medial temporal lobe are still fragmentary. In particular, it is an open question whether identical or different groups of neurons participate in different memory functions. Here, we investigated category-specific responses in the human MTL based on single-neuron recordings in presurgical epilepsy patients performing an associative long-term memory task. Additionally, auditory beat stimuli were presented during encoding and retrieval to modulate memory performance. We describe the proportion of neurons in amygdala, entorhinal cortex, hippocampus and parahippocampal cortex belonging to different response classes. These entail neurons coding stimulus-familiarity, neurons coding successful item memory, and neurons coding associated source memory, as well as the overlap between these classes. As major results we demonstrate that neurons responding to stimulus familiarity (old/new effect) can be identified in the MTL even when using previously known rather than entirely novel stimulus material (words). We observed a significant overlap between familiarity-related neurons and neurons coding item retrieval (remembered/forgotten effect). The largest fraction of familiarity-related neurons was found in the parahippocampal cortex, and a considerable fraction of all parahippocampal neurons was related to successful item retrieval. Neurons related to successful source retrieval were different from the neurons coding the associated information. Most importantly, there was no overlap between neurons coding item memory and those coding associated source memory strongly suggesting that these functions are facilitated by different sets of neurons.
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Affiliation(s)
- M Derner
- Department of Epileptology, University Hospital Bonn, Venusberg-Campus 1, 53127 Bonn, Germany
| | - G Dehnen
- Department of Epileptology, University Hospital Bonn, Venusberg-Campus 1, 53127 Bonn, Germany
| | - L Chaieb
- Department of Epileptology, University Hospital Bonn, Venusberg-Campus 1, 53127 Bonn, Germany
| | - T P Reber
- Department of Epileptology, University Hospital Bonn, Venusberg-Campus 1, 53127 Bonn, Germany; Faculty of Psychology, Swiss Distance University Institute, Ueberlandstr. 12, 3900 Brig, Switzerland
| | - V Borger
- Department of Neurosurgery, University Hospital Bonn, Venusberg-Campus 1, 53127 Bonn, Germany
| | - R Surges
- Department of Epileptology, University Hospital Bonn, Venusberg-Campus 1, 53127 Bonn, Germany
| | - B P Staresina
- School of Psychology & Centre for Human Brain Health, University of Birmingham, Birmingham, B15 2TT, United Kingdom
| | - F Mormann
- Department of Epileptology, University Hospital Bonn, Venusberg-Campus 1, 53127 Bonn, Germany
| | - J Fell
- Department of Epileptology, University Hospital Bonn, Venusberg-Campus 1, 53127 Bonn, Germany.
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35
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Veerabhadrappa R, Ul Hassan M, Zhang J, Bhatti A. Compatibility Evaluation of Clustering Algorithms for Contemporary Extracellular Neural Spike Sorting. Front Syst Neurosci 2020; 14:34. [PMID: 32714155 PMCID: PMC7340107 DOI: 10.3389/fnsys.2020.00034] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/05/2020] [Accepted: 05/14/2020] [Indexed: 01/20/2023] Open
Abstract
Deciphering useful information from electrophysiological data recorded from the brain, in-vivo or in-vitro, is dependent on the capability to analyse spike patterns efficiently and accurately. The spike analysis mechanisms are heavily reliant on the clustering algorithms that enable separation of spike trends based on their spatio-temporal behaviors. Literature review report several clustering algorithms over decades focused on different applications. Although spike analysis algorithms employ only a small subset of clustering algorithms, however, not much work has been reported on the compliance and suitability of such clustering algorithms for spike analysis. In our study, we have attempted to comment on the suitability of available clustering algorithms and performance capacity when exposed to spike analysis. In this regard, the study reports a compatibility evaluation on algorithms previously employed in spike sorting as well as the algorithms yet to be investigated for application in sorting neural spikes. The performance of the algorithms is compared in terms of their accuracy, confusion matrix and accepted validation indices. Three data sets comprising of easy, difficult, and real spike similarity with known ground-truth are chosen for assessment, ensuring a uniform testbed. The procedure also employs two feature-sets, principal component analysis and wavelets. The report also presents a statistical score scheme to evaluate the performance individually and overall. The open nature of the data sets, the clustering algorithms and the evaluation criteria make the proposed evaluation framework widely accessible to the research community. We believe that the study presents a reference guide for emerging neuroscientists to select the most suitable algorithms for their spike analysis requirements.
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Affiliation(s)
- Rakesh Veerabhadrappa
- Institute for Intelligent Systems Research and Innovation, Deakin University, Melbourne, VIC, Australia
| | - Masood Ul Hassan
- Institute for Intelligent Systems Research and Innovation, Deakin University, Melbourne, VIC, Australia
| | - James Zhang
- Institute for Intelligent Systems Research and Innovation, Deakin University, Melbourne, VIC, Australia
| | - Asim Bhatti
- Institute for Intelligent Systems Research and Innovation, Deakin University, Melbourne, VIC, Australia
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36
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Steinmetz PN. Estimates of distributed coding of visual objects by single neurons in the human brain depend on which spike sorting technique is used. J Neural Eng 2020; 17:026030. [PMID: 31951220 DOI: 10.1088/1741-2552/ab6cb8] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
Abstract
OBJECTIVE To determine whether the estimated fraction and degree of distribution of visual responsive neurons in human intracranial microwire recordings depends upon the spike sorting method used. APPROACH A large dataset of human intracranial microwire recordings from four brain areas was sorted into single unit activity (SUA) and multiunit activity (MUA) using 4 spike sorting methods previously applied to this type of recording. The responses were examined for visual responses to 33 objects which were presented. MAIN RESULTS The 4 spike sorting techniques examined here yielded fractions of responsive SUA varying from 8% in the left anterior cingulate cortex to 27% in the right amgdala. The fraction of responsive SUA and MUA depended on the type of spike sorting being used as well as brain area and side being recorded from. Agreement between spike sorting techniques was low (0.04-0.16 on the 0-1 AMIall scale). SIGNIFICANCE Prior estimates of the fraction of single neurons in the human medial temporal lobe coding semantic memory of visual objects have yielded fractions ranging from 0.04% by very strict response criteria to 47% by other criteria. A variety of explanations of these differences have been posited, including differences in the type of memory being tested, differences in visual stimuli, as well as technical differences such as spike sorting techniques. This study shows the dependence of the reported fraction of neurons encoding visual objects on the spike sorting technique employed and confirms a distributed representation of visual objects by single neurons in the human brain. Both the variation in the responsive fractions with spike sorting technique and low levels of agreement between techniques highlight the need for better understanding of the signals being extracted in human intracranial microwire recordings.
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Fedele T, Tzovara A, Steiger B, Hilfiker P, Grunwald T, Stieglitz L, Jokeit H, Sarnthein J. The relation between neuronal firing, local field potentials and hemodynamic activity in the human amygdala in response to aversive dynamic visual stimuli. Neuroimage 2020; 213:116705. [PMID: 32165266 DOI: 10.1016/j.neuroimage.2020.116705] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/06/2019] [Revised: 02/11/2020] [Accepted: 03/03/2020] [Indexed: 10/24/2022] Open
Abstract
The amygdala is a central part of networks of brain regions underlying perception and cognition, in particular related to processing of emotionally salient stimuli. Invasive electrophysiological and hemodynamic measurements are commonly used to evaluate functions of the human amygdala, but a comprehensive understanding of their relation is still lacking. Here, we aimed at investigating the link between fast and slow frequency amygdalar oscillations, neuronal firing and hemodynamic responses. To this aim, we recorded intracranial electroencephalography (iEEG), hemodynamic responses and single neuron activity from the amygdala of patients with epilepsy. Patients were presented with dynamic visual sequences of fearful faces (aversive condition), interleaved with sequences of neutral landscapes (neutral condition). Comparing responses to aversive versus neutral stimuli across participants, we observed enhanced high gamma power (HGP, >60 Hz) during the first 2 s of aversive sequence viewing, and reduced delta power (1-4 Hz) lasting up to 18 s. In 5 participants with implanted microwires, neuronal firing rates were enhanced following aversive stimuli, and exhibited positive correlation with HGP and hemodynamic responses. Our results show that high gamma power, neuronal firing and BOLD responses from the human amygdala are co-modulated. Our findings provide, for the first time, a comprehensive investigation of amygdalar responses to aversive stimuli, ranging from single-neuron spikes to local field potentials and hemodynamic responses.
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Affiliation(s)
- Tommaso Fedele
- National Research University Higher School of Economics, Moscow, Russian Federation.
| | - Athina Tzovara
- Institute for Computer Science, University of Bern, Switzerland
| | | | | | | | - Lennart Stieglitz
- Klinik für Neurochirurgie, UniversitätsSpital Zürich und Universität Zürich, Zurich, Switzerland
| | - Hennric Jokeit
- Schweizerische Epilepsie-Klinik, Zurich, Switzerland; Zentrum für Neurowissenschaften Zürich, Switzerland
| | - Johannes Sarnthein
- Klinik für Neurochirurgie, UniversitätsSpital Zürich und Universität Zürich, Zurich, Switzerland; Zentrum für Neurowissenschaften Zürich, Switzerland.
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Boran E, Fedele T, Steiner A, Hilfiker P, Stieglitz L, Grunwald T, Sarnthein J. Dataset of human medial temporal lobe neurons, scalp and intracranial EEG during a verbal working memory task. Sci Data 2020; 7:30. [PMID: 31964868 PMCID: PMC6972902 DOI: 10.1038/s41597-020-0364-3] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/16/2019] [Accepted: 12/23/2019] [Indexed: 11/09/2022] Open
Abstract
We present an electrophysiological dataset recorded from nine subjects during a verbal working memory task. Subjects were epilepsy patients undergoing intracranial monitoring for the localization of epileptic seizures. Subjects performed a modified Sternberg task in which the encoding of memory items, maintenance, and recall were temporally separated. The dataset includes simultaneously recorded scalp EEG with the 10-20 system, intracranial EEG (iEEG) recorded with depth electrodes, waveforms and spike times of neurons recorded in the medial temporal lobe, and localization information on the depth electrodes. Subject characteristics and information on each trial (set size, match/mismatch, correct/incorrect, response, and response time) are given. For technical validation of data, we provide spike sorting quality metrics and the spectra of iEEG and scalp EEG signals. This dataset enables the investigation of working memory by providing simultaneous scalp EEG and iEEG recordings, which can be used for connectivity analysis, along with hard-to-obtain neuronal recordings from humans.
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Affiliation(s)
- Ece Boran
- Klinik für Neurochirurgie, UniversitätsSpital und Universität Zürich, 8091, Zürich, Switzerland
| | - Tommaso Fedele
- Klinik für Neurochirurgie, UniversitätsSpital und Universität Zürich, 8091, Zürich, Switzerland
- Neuroscience Center Zurich, ETH Zürich, Zürich, Switzerland
- Institute for Cognitive Neuroscience, National Research University Higher School of Economics, Moscow, Russian Federation
| | - Adrian Steiner
- Klinik für Neurochirurgie, UniversitätsSpital und Universität Zürich, 8091, Zürich, Switzerland
| | - Peter Hilfiker
- Schweizerisches Epilepsie-Zentrum, 8008, Zürich, Switzerland
| | - Lennart Stieglitz
- Klinik für Neurochirurgie, UniversitätsSpital und Universität Zürich, 8091, Zürich, Switzerland
| | - Thomas Grunwald
- Schweizerisches Epilepsie-Zentrum, 8008, Zürich, Switzerland
- Klinik für Neurologie, UniversitätsSpital Zürich, 8091, Zürich, Switzerland
| | - Johannes Sarnthein
- Klinik für Neurochirurgie, UniversitätsSpital und Universität Zürich, 8091, Zürich, Switzerland.
- Neuroscience Center Zurich, ETH Zürich, Zürich, Switzerland.
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Tsitsiklis M, Miller J, Qasim SE, Inman CS, Gross RE, Willie JT, Smith EH, Sheth SA, Schevon CA, Sperling MR, Sharan A, Stein JM, Jacobs J. Single-Neuron Representations of Spatial Targets in Humans. Curr Biol 2020; 30:245-253.e4. [PMID: 31902728 PMCID: PMC6981010 DOI: 10.1016/j.cub.2019.11.048] [Citation(s) in RCA: 41] [Impact Index Per Article: 8.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/16/2019] [Revised: 10/10/2019] [Accepted: 11/15/2019] [Indexed: 12/14/2022]
Abstract
The hippocampus and surrounding medial-temporal-lobe (MTL) structures are critical for both memory and spatial navigation, but we do not fully understand the neuronal representations used to support these behaviors. Much research has examined how the MTL neurally represents spatial information, such as with "place cells" that represent an animal's current location or "head-direction cells" that code for an animal's current heading. In addition to behaviors that require an animal to attend to the current spatial location, navigating to remote destinations is a common part of daily life. To examine the neural basis of these behaviors, we recorded single-neuron activity from neurosurgical patients playing Treasure Hunt, a virtual-reality spatial-memory task. By analyzing how the activity of these neurons related to behavior in Treasure Hunt, we found that the firing rates of many MTL neurons during navigation significantly changed depending on the position of the current spatial target. In addition, we observed neurons whose firing rates during navigation were tuned to specific heading directions in the environment, and others whose activity changed depending on the timing within the trial. By showing that neurons in our task represent remote locations rather than the subject's own position, our results suggest that the human MTL can represent remote spatial information according to task demands.
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Affiliation(s)
- Melina Tsitsiklis
- Doctoral Program in Neurobiology and Behavior, Columbia University, New York, NY 10027, USA
| | - Jonathan Miller
- Department of Biomedical Engineering, Columbia University, New York, NY 10027, USA
| | - Salman E Qasim
- Department of Biomedical Engineering, Columbia University, New York, NY 10027, USA
| | - Cory S Inman
- Department of Neurosurgery, Emory University School of Medicine, Atlanta, GA 30322, USA
| | - Robert E Gross
- Department of Neurosurgery, Emory University School of Medicine, Atlanta, GA 30322, USA
| | - Jon T Willie
- Department of Neurosurgery, Emory University School of Medicine, Atlanta, GA 30322, USA
| | - Elliot H Smith
- Department of Neurosurgery, University of Utah, Salt Lake City, UT 84112, USA
| | - Sameer A Sheth
- Department of Neurosurgery, Baylor College of Medicine, Houston, TX 77030, USA
| | - Catherine A Schevon
- Department of Neurology, Columbia University Medical Center, New York, NY 10032, USA
| | - Michael R Sperling
- Department of Neurology, Thomas Jefferson University, Philadelphia, PA 19107, USA
| | - Ashwini Sharan
- Department of Neurosurgery, Thomas Jefferson University, Philadelphia, PA 19107, USA
| | - Joel M Stein
- Department of Radiology, Hospital of the University of Pennsylvania, Philadelphia, PA 19104, USA
| | - Joshua Jacobs
- Department of Biomedical Engineering, Columbia University, New York, NY 10027, USA.
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Heelan C, Lee J, O’Shea R, Lynch L, Brandman DM, Truccolo W, Nurmikko AV. Decoding speech from spike-based neural population recordings in secondary auditory cortex of non-human primates. Commun Biol 2019; 2:466. [PMID: 31840111 PMCID: PMC6906475 DOI: 10.1038/s42003-019-0707-9] [Citation(s) in RCA: 19] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/07/2019] [Accepted: 11/15/2019] [Indexed: 11/21/2022] Open
Abstract
Direct electronic communication with sensory areas of the neocortex is a challenging ambition for brain-computer interfaces. Here, we report the first successful neural decoding of English words with high intelligibility from intracortical spike-based neural population activity recorded from the secondary auditory cortex of macaques. We acquired 96-channel full-broadband population recordings using intracortical microelectrode arrays in the rostral and caudal parabelt regions of the superior temporal gyrus (STG). We leveraged a new neural processing toolkit to investigate the choice of decoding algorithm, neural preprocessing, audio representation, channel count, and array location on neural decoding performance. The presented spike-based machine learning neural decoding approach may further be useful in informing future encoding strategies to deliver direct auditory percepts to the brain as specific patterns of microstimulation.
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Affiliation(s)
- Christopher Heelan
- School of Engineering, Brown University, Providence, RI USA
- Connexon Systems, Providence, RI USA
| | - Jihun Lee
- School of Engineering, Brown University, Providence, RI USA
| | - Ronan O’Shea
- School of Engineering, Brown University, Providence, RI USA
| | - Laurie Lynch
- School of Engineering, Brown University, Providence, RI USA
| | - David M. Brandman
- Department of Surgery (Neurosurgery), Dalhousie University, Halifax, Nova Scotia Canada
| | - Wilson Truccolo
- Department of Neuroscience, Brown University, Providence, RI USA
- Carney Institute for Brain Science, Brown University, Providence, RI USA
| | - Arto V. Nurmikko
- School of Engineering, Brown University, Providence, RI USA
- Carney Institute for Brain Science, Brown University, Providence, RI USA
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41
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Mahallati S, Bezdek JC, Popovic MR, Valiante TA. Cluster tendency assessment in neuronal spike data. PLoS One 2019; 14:e0224547. [PMID: 31714913 PMCID: PMC6850537 DOI: 10.1371/journal.pone.0224547] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/04/2019] [Accepted: 10/16/2019] [Indexed: 02/05/2023] Open
Abstract
Sorting spikes from extracellular recording into clusters associated with distinct single units (putative neurons) is a fundamental step in analyzing neuronal populations. Such spike sorting is intrinsically unsupervised, as the number of neurons are not known a priori. Therefor, any spike sorting is an unsupervised learning problem that requires either of the two approaches: specification of a fixed value k for the number of clusters to seek, or generation of candidate partitions for several possible values of c, followed by selection of a best candidate based on various post-clustering validation criteria. In this paper, we investigate the first approach and evaluate the utility of several methods for providing lower dimensional visualization of the cluster structure and on subsequent spike clustering. We also introduce a visualization technique called improved visual assessment of cluster tendency (iVAT) to estimate possible cluster structures in data without the need for dimensionality reduction. Experimental results are conducted on two datasets with ground truth labels. In data with a relatively small number of clusters, iVAT is beneficial in estimating the number of clusters to inform the initialization of clustering algorithms. With larger numbers of clusters, iVAT gives a useful estimate of the coarse cluster structure but sometimes fails to indicate the presumptive number of clusters. We show that noise associated with recording extracellular neuronal potentials can disrupt computational clustering schemes, highlighting the benefit of probabilistic clustering models. Our results show that t-Distributed Stochastic Neighbor Embedding (t-SNE) provides representations of the data that yield more accurate visualization of potential cluster structure to inform the clustering stage. Moreover, The clusters obtained using t-SNE features were more reliable than the clusters obtained using the other methods, which indicates that t-SNE can potentially be used for both visualization and to extract features to be used by any clustering algorithm.
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Affiliation(s)
- Sara Mahallati
- Institute of Biomaterials and Biomedical Engineering, University of Toronto, Toronto, Canada
- KITE Research Institute, University Health Network, Toronto, Canada
- Krembil Research Institute, University Health Network, Toronto, Canada
- CRANIA, University Health Network and University of Toronto, Toronto, Canada
| | - James C. Bezdek
- Computer Science and Information Systems Departments, University of Melbourne, Melbourne, Australia
| | - Milos R. Popovic
- Institute of Biomaterials and Biomedical Engineering, University of Toronto, Toronto, Canada
- KITE Research Institute, University Health Network, Toronto, Canada
- CRANIA, University Health Network and University of Toronto, Toronto, Canada
| | - Taufik A. Valiante
- Institute of Biomaterials and Biomedical Engineering, University of Toronto, Toronto, Canada
- Krembil Research Institute, University Health Network, Toronto, Canada
- Division of Neurosurgery, University of Toronto, Toronto, Canada
- CRANIA, University Health Network and University of Toronto, Toronto, Canada
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42
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Memory retrieval modulates spatial tuning of single neurons in the human entorhinal cortex. Nat Neurosci 2019; 22:2078-2086. [PMID: 31712776 PMCID: PMC6897360 DOI: 10.1038/s41593-019-0523-z] [Citation(s) in RCA: 27] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/17/2018] [Accepted: 09/23/2019] [Indexed: 01/18/2023]
Abstract
The medial temporal lobe is critical for both spatial navigation and memory. Although single neurons in the medial temporal lobe activate to represent locations in the environment during navigation, how this spatial tuning relates to memory for events involving those locations remains unclear. We examined memory-related changes in spatial tuning by recording single-neuron activity from neurosurgical patients performing a virtual-reality object-location memory task. We identified 'memory-trace cells' with activity that was spatially tuned to the retrieved location of the specific object that participants were cued to remember. Memory-trace cells in the entorhinal cortex, in particular, encoded discriminable representations of different memories through a memory-specific rate code. These findings indicate that single neurons in the human entorhinal cortex change their spatial tuning to target relevant memories for retrieval.
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43
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Plugging in to Human Memory: Advantages, Challenges, and Insights from Human Single-Neuron Recordings. Cell 2019; 179:1015-1032. [DOI: 10.1016/j.cell.2019.10.016] [Citation(s) in RCA: 28] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/05/2019] [Revised: 09/26/2019] [Accepted: 10/18/2019] [Indexed: 11/23/2022]
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44
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Schevon CA, Tobochnik S, Eissa T, Merricks E, Gill B, Parrish RR, Bateman LM, McKhann GM, Emerson RG, Trevelyan AJ. Multiscale recordings reveal the dynamic spatial structure of human seizures. Neurobiol Dis 2019; 127:303-311. [PMID: 30898669 PMCID: PMC6588430 DOI: 10.1016/j.nbd.2019.03.015] [Citation(s) in RCA: 34] [Impact Index Per Article: 5.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/09/2019] [Revised: 03/11/2019] [Accepted: 03/15/2019] [Indexed: 02/07/2023] Open
Abstract
The cellular activity underlying human focal seizures, and its relationship to key signatures in the EEG recordings used for therapeutic purposes, has not been well characterized despite many years of investigation both in laboratory and clinical settings. The increasing use of microelectrodes in epilepsy surgery patients has made it possible to apply principles derived from laboratory research to the problem of mapping the spatiotemporal structure of human focal seizures, and characterizing the corresponding EEG signatures. In this review, we describe results from human microelectrode studies, discuss some data interpretation pitfalls, and explain the current understanding of the key mechanisms of ictogenesis and seizure spread.
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Affiliation(s)
- Catherine A Schevon
- Department of Neurology, Columbia University Medical Center, New York, NY, USA.
| | - Steven Tobochnik
- Department of Neurology, Columbia University Medical Center, New York, NY, USA
| | - Tahra Eissa
- Department of Applied Mathematics, University of Colorado at Boulder, Boulder, CO, USA
| | - Edward Merricks
- Department of Neurology, Columbia University Medical Center, New York, NY, USA
| | - Brian Gill
- Department of Neurological Surgery, Columbia University Medical Center, New York, NY, USA
| | - R Ryley Parrish
- Institute for Aging, Newcastle University, Newcastle-Upon-Tyne, UK
| | - Lisa M Bateman
- Department of Neurology, Columbia University Medical Center, New York, NY, USA
| | - Guy M McKhann
- Department of Neurological Surgery, Columbia University Medical Center, New York, NY, USA
| | - Ronald G Emerson
- Department of Neurology, Weill Cornell Medical Center, New York, NY, USA
| | - Andrew J Trevelyan
- Department of Neurology, Columbia University Medical Center, New York, NY, USA; Institute for Aging, Newcastle University, Newcastle-Upon-Tyne, UK
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45
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Representation of abstract semantic knowledge in populations of human single neurons in the medial temporal lobe. PLoS Biol 2019; 17:e3000290. [PMID: 31158216 PMCID: PMC6564037 DOI: 10.1371/journal.pbio.3000290] [Citation(s) in RCA: 29] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/18/2018] [Revised: 06/13/2019] [Accepted: 05/10/2019] [Indexed: 11/23/2022] Open
Abstract
Sensory experience elicits complex activity patterns throughout the neocortex. Projections from the neocortex converge onto the medial temporal lobe (MTL), in which distributed neocortical firing patterns are distilled into sparse representations. The precise nature of these neuronal representations is still unknown. Here, we show that population activity patterns in the MTL are governed by high levels of semantic abstraction. We recorded human single-unit activity in the MTL (4,917 units, 25 patients) while subjects viewed 100 images grouped into 10 semantic categories of 10 exemplars each. High levels of semantic abstraction were indicated by representational similarity analyses (RSAs) of patterns elicited by individual stimuli. Moreover, pattern classifiers trained to decode semantic categories generalised successfully to unseen exemplars, and classifiers trained to decode exemplar identity more often confused exemplars of the same versus different categories. Semantic abstraction and generalisation may thus be key to efficiently distill the essence of an experience into sparse representations in the human MTL. Although semantic abstraction is efficient and may facilitate generalisation of knowledge to novel situations, it comes at the cost of a loss of detail and may be central to the generation of false memories. Single-neuron representations of stimuli in the human medial temporal lobe at the population level are governed by highly abstract semantic principles, but the attendant efficiency and potential for generalization comes at the cost of confusion between related stimuli. What is the neuronal code for sensory experience in the human medial temporal lobe (MTL)? Single-cell electrophysiology in the awake human brain during chronic, invasive epilepsy monitoring has previously revealed the existence of so-called concept cells. These cells have been found to increase their firing rate in response to, for example, the famous tennis player ‘Roger Federer’, whether his name is spoken by a computer voice or a picture of him is presented on a computer screen. These neurons thus seem to encode the semantic content of a stimulus, regardless of the sensory modality through which it is delivered. Previous work has predominantly focused on individual neurons that were selected based on their strong response to a particular stimulus using rather conservative statistical criteria. Those studies stressed that concept cells encode a single, concrete concept in an all-or-nothing fashion. Here, we analysed the neuronal code on the level of the entire population of neurons without any preselection. We conducted representational similarity analyses (RSAs) and pattern classification analyses of firing patterns evoked by visual stimuli (for example, a picture of an apple) that could be grouped into semantic categories on multiple levels of abstraction (‘fruit’, ‘food’, ‘natural things’). We found that neuronal activation patterns contain information on higher levels of categorical abstraction rather than just the level of individual exemplars. On the one hand, the neuronal code in the human MTL thus seems well suited to generalise semantic knowledge to new situations; on the other hand, it could also be responsible for the generation of false memories.
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46
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Inhibition and oscillations in the human brain tissue in vitro. Neurobiol Dis 2019; 125:198-210. [DOI: 10.1016/j.nbd.2019.02.006] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/31/2018] [Revised: 12/22/2018] [Accepted: 02/07/2019] [Indexed: 01/22/2023] Open
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Boran E, Fedele T, Klaver P, Hilfiker P, Stieglitz L, Grunwald T, Sarnthein J. Persistent hippocampal neural firing and hippocampal-cortical coupling predict verbal working memory load. SCIENCE ADVANCES 2019; 5:eaav3687. [PMID: 30944858 PMCID: PMC6436923 DOI: 10.1126/sciadv.aav3687] [Citation(s) in RCA: 68] [Impact Index Per Article: 11.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/10/2018] [Accepted: 02/06/2019] [Indexed: 05/02/2023]
Abstract
The maintenance of items in working memory relies on persistent neural activity in a widespread network of brain areas. To investigate the influence of load on working memory, we asked human subjects to maintain sets of letters in memory while we recorded single neurons and intracranial encephalography (EEG) in the medial temporal lobe and scalp EEG. Along the periods of a trial, hippocampal neural firing differentiated between success and error trials during stimulus encoding, predicted workload during memory maintenance, and predicted the subjects' behavior during retrieval. During maintenance, neuronal firing was synchronized with intracranial hippocampal EEG. On the network level, synchronization between hippocampal and scalp EEG in the theta-alpha frequency range showed workload dependent oscillatory coupling between hippocampus and cortex. Thus, we found that persistent neural activity in the hippocampus participated in working memory processing that is specific to memory maintenance, load sensitive and synchronized to the cortex.
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Affiliation(s)
- Ece Boran
- Klinik für Neurochirurgie, UniversitätsSpital und Universität Zürich, 8091 Zürich, Switzerland
| | - Tommaso Fedele
- Klinik für Neurochirurgie, UniversitätsSpital und Universität Zürich, 8091 Zürich, Switzerland
- Zentrum für Neurowissenschaften Zürich, ETH Zürich, Zürich, Switzerland
- Institute for Cognitive Neuroscience, National Research University Higher School of Economics, Russian Federation
| | - Peter Klaver
- Zentrum für Neurowissenschaften Zürich, ETH Zürich, Zürich, Switzerland
- School of Psychology, University of Surrey, Surrey GU2 7XH, UK
- University of Applied Sciences in Special Needs Education, 8050 Zürich, Switzerland
| | - Peter Hilfiker
- Schweizerisches Epilepsie-Zentrum, 8008 Zürich, Switzerland
| | - Lennart Stieglitz
- Klinik für Neurochirurgie, UniversitätsSpital und Universität Zürich, 8091 Zürich, Switzerland
| | - Thomas Grunwald
- Schweizerisches Epilepsie-Zentrum, 8008 Zürich, Switzerland
- Klinik für Neurologie, UniversitätsSpital Zürich, 8091 Zürich, Switzerland
| | - Johannes Sarnthein
- Klinik für Neurochirurgie, UniversitätsSpital und Universität Zürich, 8091 Zürich, Switzerland
- Zentrum für Neurowissenschaften Zürich, ETH Zürich, Zürich, Switzerland
- Corresponding author.
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48
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Kutter EF, Bostroem J, Elger CE, Mormann F, Nieder A. Single Neurons in the Human Brain Encode Numbers. Neuron 2018; 100:753-761.e4. [DOI: 10.1016/j.neuron.2018.08.036] [Citation(s) in RCA: 42] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/09/2018] [Revised: 06/19/2018] [Accepted: 08/24/2018] [Indexed: 01/29/2023]
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49
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Chaure FJ, Rey HG, Quian Quiroga R. A novel and fully automatic spike-sorting implementation with variable number of features. J Neurophysiol 2018; 120:1859-1871. [PMID: 29995603 PMCID: PMC6230803 DOI: 10.1152/jn.00339.2018] [Citation(s) in RCA: 117] [Impact Index Per Article: 16.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/25/2018] [Revised: 07/06/2018] [Accepted: 07/09/2018] [Indexed: 11/22/2022] Open
Abstract
The most widely used spike-sorting algorithms are semiautomatic in practice, requiring manual tuning of the automatic solution to achieve good performance. In this work, we propose a new fully automatic spike-sorting algorithm that can capture multiple clusters of different sizes and densities. In addition, we introduce an improved feature selection method, by using a variable number of wavelet coefficients, based on the degree of non-Gaussianity of their distributions. We evaluated the performance of the proposed algorithm with real and simulated data. With real data from single-channel recordings, in ~95% of the cases the new algorithm replicated, in an unsupervised way, the solutions obtained by expert sorters, who manually optimized the solution of a previous semiautomatic algorithm. This was done while maintaining a low number of false positives. With simulated data from single-channel and tetrode recordings, the new algorithm was able to correctly detect many more neurons compared with previous implementations and also compared with recently introduced algorithms, while significantly reducing the number of false positives. In addition, the proposed algorithm showed good performance when tested with real tetrode recordings. NEW & NOTEWORTHY We propose a new fully automatic spike-sorting algorithm, including several steps that allow the selection of multiple clusters of different sizes and densities. Moreover, it defines the dimensionality of the feature space in an unsupervised way. We evaluated the performance of the algorithm with real and simulated data, from both single-channel and tetrode recordings. The proposed algorithm was able to outperform manual sorting from experts and other recent unsupervised algorithms.
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Affiliation(s)
- Fernando J Chaure
- Centre for Systems Neuroscience, University of Leicester , Leicester , United Kingdom
- Instituto de Ingeniería Biomédica, UBA, Buenos Aires , Argentina
- Estudios de Neurociencias y Sistemas Complejos (ENYS), CONICET - Hospital El Cruce - UNAJ, Florencio Varela, Argentina
- Instituto de Biología Celular y Neurociencias "Prof. E. De Robertis", Facultad de Medicina, UBA, Buenos Aires , Argentina
| | - Hernan G Rey
- Centre for Systems Neuroscience, University of Leicester , Leicester , United Kingdom
| | - Rodrigo Quian Quiroga
- Centre for Systems Neuroscience, University of Leicester , Leicester , United Kingdom
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50
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Knieling S, Niediek J, Kutter E, Bostroem J, Elger CE, Mormann F. An online adaptive screening procedure for selective neuronal responses. J Neurosci Methods 2017; 291:36-42. [PMID: 28826654 DOI: 10.1016/j.jneumeth.2017.08.002] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/09/2017] [Revised: 08/01/2017] [Accepted: 08/02/2017] [Indexed: 11/30/2022]
Abstract
BACKGROUND A common problem in neurophysiology is to identify stimuli that elicit neuronal responses in a given brain region. Particularly in situations where electrode positions are fixed, this can be a time-consuming task that requires presentation of a large number of stimuli. Such a screening for response-eliciting stimuli is employed, e.g., as a standard procedure to identify 'concept cells' in the human medial temporal lobe. NEW METHOD Our new method evaluates neuronal responses to stimuli online during a screening session, which allows us to successively exclude stimuli that do not evoke a response. Using this method, we can screen a larger number of stimuli which in turn increases the chances of finding responsive neurons and renders time-consuming offline analysis unnecessary. RESULTS Our method enabled us to present 30% more stimuli in the same period of time with additional presentations of the most promising candidate stimuli. Our online method ran smoothly on a standard computer and network. COMPARISON WITH AN EXISTING METHOD To analyze how our online screening procedure performs in comparison to an established offline method, we used the Wave_Clus software package. We did not observe any major drawbacks in our method, but a much higher efficiency and analysis speed. CONCLUSIONS By transitioning from a traditional offline screening procedure to our new online method, we substantially increased the number of visual stimuli presented in a given time period. This allows to identify more response-eliciting stimuli, which forms the basis to better address a great number of questions in cognitive neuroscience.
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Affiliation(s)
- S Knieling
- Dept. of Epileptology, University of Bonn, Germany
| | - J Niediek
- Dept. of Epileptology, University of Bonn, Germany
| | - E Kutter
- Dept. of Epileptology, University of Bonn, Germany
| | - J Bostroem
- Dept. of Neurosurgery, University of Bonn, Germany
| | - C E Elger
- Dept. of Epileptology, University of Bonn, Germany
| | - F Mormann
- Dept. of Epileptology, University of Bonn, Germany.
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